Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 100 of 325
Found at i:32203093 original size:3 final size:3
Alignment explanation
Indices: 32203085--32203125 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
32203075 GGATGTTAAC
*
32203085 GAT GAT GAT GGT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
32203126 GCACCCTCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.32, C:0.00, G:0.37, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:32206313 original size:37 final size:37
Alignment explanation
Indices: 32206250--32206361 Score: 99
Period size: 37 Copynumber: 3.1 Consensus size: 37
32206240 ATTCCAAAAA
*
32206250 TAATATTATTTTAATAGTTTAATATTAAATTAA-ATT
1 TAATATTATCTTAATAGTTTAATATTAAATTAATATT
* *
32206286 TAATACTTATCTTAATAGTATT-TTATTAATTTAATATT
1 TAATA-TTATCTTAATAGT-TTAATATTAAATTAATATT
* * *
32206324 AAAGTGATTATCTTAATA--TTAA-ATTAATTTAATGTT
1 TAA-T-ATTATCTTAATAGTTTAATATTAAATTAATATT
32206360 TA
1 TA
32206362 TCTTGTAGTT
Statistics
Matches: 63, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
36 21 0.33
37 22 0.35
38 7 0.11
39 12 0.19
40 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.52
Consensus pattern (37 bp):
TAATATTATCTTAATAGTTTAATATTAAATTAATATT
Found at i:32206427 original size:62 final size:58
Alignment explanation
Indices: 32206336--32206451 Score: 160
Period size: 59 Copynumber: 1.9 Consensus size: 58
32206326 AGTGATTATC
* * * *
32206336 TTAATATTAAATTAATTTAATGTTTATCTTGTAGTTAAATATTTTATTATTTTAATAAGAT
1 TTAATATTAAATTAATCTAATATTTATCTTG-A--TAAATATTATATTAATTTAATAAGAT
32206397 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAA-TTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
32206452 TTTAAGTGAT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
59 20 0.40
61 12 0.24
62 18 0.36
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.53
Consensus pattern (58 bp):
TTAATATTAAATTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAAGAT
Found at i:32211880 original size:16 final size:16
Alignment explanation
Indices: 32211849--32211887 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
32211839 CTTCTTTTAG
*
32211849 TTGTTT-TAATTTTCT
1 TTGTTTCTAAATTTCT
32211864 TTGTTTCTAAATTTCT
1 TTGTTTCTAAATTTCT
32211880 TTGTTTCT
1 TTGTTTCT
32211888 TCTTTCAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.13, C:0.10, G:0.08, T:0.69
Consensus pattern (16 bp):
TTGTTTCTAAATTTCT
Found at i:32220496 original size:18 final size:17
Alignment explanation
Indices: 32220453--32220498 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
32220443 AGGTAAGGAA
32220453 AATA-AAATA-AAATAT
1 AATAGAAATATAAATAT
* *
32220468 ATTAGATATATAAATAT
1 AATAGAAATATAAATAT
32220485 AATAGTAAATATAA
1 AATAG-AAATATAA
32220499 TAATGTTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
15 3 0.12
16 4 0.17
17 10 0.42
18 7 0.29
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (17 bp):
AATAGAAATATAAATAT
Found at i:32220579 original size:3 final size:3
Alignment explanation
Indices: 32220571--32220870 Score: 117
Period size: 3 Copynumber: 98.3 Consensus size: 3
32220561 AATATTTATA
* * * *
32220571 AAT AAT AAT AGT AAT -GT AAT AAT AAT AAT AAT ATT AAGT -AT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
* * * *
32220615 -AT AAAT AAT ATGT ACAT AAC AGT AAT AAT AAT AAGT AAC AAT AAT AAT
1 AAT -AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
* *
32220663 AAT AAT -AT AGA- AATT CAA- AA- AAGT AA- ACCT AAT -AT AAT GAT
1 AAT AAT AAT A-AT AA-T -AAT AAT AA-T AAT A-AT AAT AAT AAT AAT
* * * *
32220704 ATT AA- AAT AA- AAT -AT ACACT AAT ATT TAT AAAT AAT AAT AGT AA-
1 AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT -AAT AAT AAT AAT AAT
* * *
32220748 ATAT AAT AAT AAT AAT ACT AAT ACT AAT AAT AAT AAT GAT AAT AAT
1 A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
32220794 AAT AAT ATT AAGT -AT AGT -AT AAAT AAT ATAT ACAT AAC AGT AAT AATT
1 AAT AAT AAT AA-T AAT AAT AAT -AAT AAT A-AT A-AT AAT AAT AAT AA-T
*
32220842 AAT AAGT AAC AAT AAT AAT AAT AAT AAT A
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT A
32220871 TAGAAATTTA
Statistics
Matches: 219, Mismatches: 46, Indels: 64
0.67 0.14 0.19
Matches are distributed among these distances:
2 22 0.10
3 159 0.73
4 34 0.16
5 4 0.02
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:32220659 original size:19 final size:19
Alignment explanation
Indices: 32220631--32220667 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
32220621 AATATGTACA
*
32220631 TAACAGTAATAATAATAAG
1 TAACAATAATAATAATAAG
32220650 TAACAATAATAATAATAA
1 TAACAATAATAATAATAA
32220668 TATAGAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (19 bp):
TAACAATAATAATAATAAG
Found at i:32220928 original size:16 final size:16
Alignment explanation
Indices: 32220895--32220927 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32220885 ACCTAAACAT
*
32220895 AATATAATAATATTAA
1 AATAAAATAATATTAA
32220911 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
32220926 AA
1 AA
32220928 AATACTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:32223021 original size:72 final size:72
Alignment explanation
Indices: 32222812--32223338 Score: 527
Period size: 72 Copynumber: 7.1 Consensus size: 72
32222802 ATAAATTAAG
* ** * * ** ** *
32222812 AAACAAAAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
*
32222877 TTTTTTTTGA
66 ---ATTTTGA
* * * * * **
32222887 AAGATAGAAATTGAAAATTCCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATGAG
1 AA-ACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAG
*
32222951 TTGATTTTTGA
62 TTGAATTTTGA
* * *
32222962 AAACATAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
32223027 ATTTTGA
66 ATTTTGA
* * * * ** *
32223034 AAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
*
32223099 TTTTTTTTTTTGAA
66 ------ATTTTG-A
* * * * *
32223113 AAATAGAAATTGAAAATACATCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
32223178 ATTTTGA
66 ATTTTGA
* * *
32223185 AAACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA
1 AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
32223250 ATTTTGA
66 ATTTTGA
* * *
32223257 AAATAGAAA-TAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTG
1 AAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
32223321 AATTTTGA
65 AATTTTGA
*
32223329 AAATAGAAAT
1 AAACAGAAAT
32223339 AAAAATATCA
Statistics
Matches: 386, Mismatches: 52, Indels: 30
0.82 0.11 0.06
Matches are distributed among these distances:
71 5 0.01
72 231 0.60
73 5 0.01
74 18 0.05
75 11 0.03
76 16 0.04
78 41 0.11
79 59 0.15
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (72 bp):
AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
ATTTTGA
Found at i:32223158 original size:151 final size:144
Alignment explanation
Indices: 32222826--32223338 Score: 570
Period size: 151 Copynumber: 3.5 Consensus size: 144
32222816 AAAAATTGCC
* ** * * *
32222826 AATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTTTGAAAGA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA---ATTTTGAAA-A
* *
32222891 TAGAAATTGAAAATT-CCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATGAGTTG
61 CAGAAATTG-AAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
32222954 ATTTTTGAAAACAT--AAATTGAA
122 ATTTTTGAAAA-ATAGAAATTGAA
* * *
32222976 AATACCTCAACGTGTCTTGAGGTTCAACTCATTACTCGCAATATGAGTTGAATTTTGAAAATAGA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCATT-CTCGCAATATGAGTTGAATTTTGAAAACAGA
*
32223041 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTT
65 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA------T
32223106 TTTTGAAAAATAGAAATTGAA
124 TTTTGAAAAATAGAAATTGAA
* * *
32223127 AATACATCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATCTGAGTTGAATTTTGAAAACAGA
1 AATACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAATTTTGAAAACAGA
* * * ** * *
32223192 AATTGAAATTACCTCAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAATTTTG-
65 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
*
32223256 AAAATAGAAA-TAAA
130 AAAATAGAAATTGAA
* * *
32223270 AATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGTTGAATTTTGAAAATAG
1 AA-TACCTCAGCGTGTCTTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGAATTTTGAAAACAG
32223335 AAAT
64 AAAT
32223339 AAAAATATCA
Statistics
Matches: 319, Mismatches: 31, Indels: 32
0.84 0.08 0.08
Matches are distributed among these distances:
143 7 0.02
144 105 0.33
145 10 0.03
146 17 0.05
147 8 0.03
149 3 0.01
150 52 0.16
151 115 0.36
152 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (144 bp):
AATACCTCAGCGTGTCTTGAGGCTCAACTCATTCTCGCAATATGAGTTGAATTTTGAAAACAGAA
ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA
AAATAGAAATTGAA
Found at i:32223217 original size:223 final size:220
Alignment explanation
Indices: 32222579--32223318 Score: 839
Period size: 223 Copynumber: 3.3 Consensus size: 220
32222569 GCAGAAATTG
* * * *
32222579 GAAAACAGAAATTGAAAA-TACCTCAGCGTGCCCTGACGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAATAGAAA-TAAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * **
32222643 TGA---TTTTTGAAAAATAGAAATTGAAATTACCTCAGCGCGT-CCAGAGGCTCAACTCACCTCT
65 CGATTTTTTTTGAAAAATAGAAATTGAAAATACATCAGCATGTACC-GAGGCTCAACTCACCTCT
* * *
32222704 CGC-A-ATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCA
129 CGCAATATGAGTTGA--ATTTTGAAA-ACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCA
* **
32222767 ACTCATTTCTTGCAATATGAGTTGAATTTT
191 ACTCATTACTCACAATATGAGTTGAATTTT
* * *
32222797 GAAACATAAATTAAGAAACAAAAATTGCCAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCT
1 G----A-AAA-T-AGAAATAAAAA-T-----TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* * * * *
32222862 CGCATTATGAGTTGATTTTTTTTGAAAGATAGAAATTGAAAATTCCTCAGCATGTGAACCGAGGC
53 CGCAATATGAGTCGATTTTTTTTGAAAAATAGAAATTGAAAATACATCAGCATGT--ACCGAGGC
* * *
32222927 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACATAAATTGAAAATACCTCAACGTGTC
116 TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACATGTC
* *
32222992 TTGAGGTTCAACTCATTACTCGCAATATGAGTTGAATTTT
181 TTGAGGCTCAACTCATTACTCACAATATGAGTTGAATTTT
**
32223032 GAAAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
1 GAAAATAGAAATAAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
* **
32223097 GATTTTTTTTTTTGAAAAATAGAAATTGAAAATACATCAGCATGT-CTTGAGGCTCAACTCATTT
66 GA---TTTTTTTTGAAAAATAGAAATTGAAAATACATCAGCATGTAC-CGAGGCTCAACTCACCT
* *
32223161 CTCGCAATCTGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACATGTCTTGAGGCTCAA
127 CTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAA
*
32223226 CTCATTTCTCACAATATGAGTTGAATTTT
192 CTCATTACTCACAATATGAGTTGAATTTT
* * ** *
32223255 GAAAATAGAAATAAAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGTAATATGAGT
1 GAAAATAGAAATAAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
32223319 TGAATTTTGA
Statistics
Matches: 451, Mismatches: 45, Indels: 47
0.83 0.08 0.09
Matches are distributed among these distances:
218 1 0.00
222 47 0.10
223 160 0.35
224 4 0.01
225 42 0.09
227 1 0.00
228 8 0.02
229 1 0.00
230 3 0.01
231 47 0.10
234 32 0.07
235 63 0.14
236 30 0.07
237 3 0.01
238 9 0.02
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (220 bp):
GAAAATAGAAATAAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTC
GATTTTTTTTGAAAAATAGAAATTGAAAATACATCAGCATGTACCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCA
TTACTCACAATATGAGTTGAATTTT
Found at i:32235374 original size:16 final size:15
Alignment explanation
Indices: 32235351--32235387 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
32235341 AGTAATGTTA
*
32235351 AAATATATATAATAT
1 AAATATATATAAAAT
32235366 AATATATATATAAAAT
1 AA-ATATATATAAAAT
32235382 AAATAT
1 AAATAT
32235388 TGAAAAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
AAATATATATAAAAT
Found at i:32235721 original size:9 final size:9
Alignment explanation
Indices: 32235700--32235733 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
32235690 AAATATAATA
*
32235700 AATAATAAT
1 AATAATAAC
32235709 AATAATAAC
1 AATAATAAC
*
32235718 AATAATAGC
1 AATAATAAC
32235727 AATAATA
1 AATAATA
32235734 GTAAAAATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (9 bp):
AATAATAAC
Found at i:32235902 original size:3 final size:3
Alignment explanation
Indices: 32235894--32236184 Score: 117
Period size: 3 Copynumber: 95.3 Consensus size: 3
32235884 AATATTTATA
* * *
32235894 AAT AAT AAT AGT AAT -GT AAT AAT AAT AAT AAT AAT ATT AAGT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
* * * * *
32235938 AGT -AT AAAT AAT ATGT ACAT AAC AGT AAT AAT AAT AAGT AAC AAT AAT
1 AAT AAT -AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
32235986 AAT AAT AAT -AT AGA- AATT CAA- AA- AAGT AA- ACAT AAT -AT AAT
1 AAT AAT AAT AAT A-AT AA-T -AAT AAT AA-T AAT A-AT AAT AAT AAT
* * * * *
32236027 GAT ATT AA- AAT AA- AAT -AT ACACT AAT ATT TAT AAAT AAT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT A-A-T AAT AAT AAT -AAT AAT AAT AAT
* * *
32236072 AA- ATAT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAA AAT AAT ATT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
32236117 AAGT -AT AGT -AT AAAT AAT ATAT ACAT AAC AGT AAT AATT AAT AAGT
1 AA-T AAT AAT AAT -AAT AAT A-AT A-AT AAT AAT AAT AA-T AAT AA-T
*
32236163 AAC AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT A
32236185 TAGAAATTCA
Statistics
Matches: 214, Mismatches: 42, Indels: 64
0.67 0.13 0.20
Matches are distributed among these distances:
2 22 0.10
3 154 0.72
4 34 0.16
5 4 0.02
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:32236154 original size:20 final size:21
Alignment explanation
Indices: 32236129--32236182 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
32236119 GTATAGTATA
*
32236129 AATAATAT-ATACA-TAACAGT
1 AATAATATAATA-AGTAACAAT
32236149 AATAAT-TAATAAGTAACAAT
1 AATAATATAATAAGTAACAAT
32236169 AATAATAATAATAA
1 AATAAT-ATAATAA
32236183 TATAGAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
19 2 0.07
20 21 0.72
22 6 0.21
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.30
Consensus pattern (21 bp):
AATAATATAATAAGTAACAAT
Found at i:32236242 original size:16 final size:16
Alignment explanation
Indices: 32236209--32236241 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32236199 AACTAAACAT
*
32236209 AATATAATAATATTAA
1 AATAAAATAATATTAA
32236225 AATAAAATAAT-TTAA
1 AATAAAATAATATTAA
32236240 AA
1 AA
32236242 AATACTATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AATAAAATAATATTAA
Found at i:32243199 original size:36 final size:37
Alignment explanation
Indices: 32243129--32243200 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 37
32243119 CGGTACTCTA
* *
32243129 TGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCAT
1 TGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCAT
*
32243166 TGGTGTGTAGGGATGGGT-GGTCGATTTTATCCCCA
1 TGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCA
32243201 CATAATGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
36 16 0.50
37 16 0.50
ACGTcount: A:0.14, C:0.12, G:0.36, T:0.38
Consensus pattern (37 bp):
TGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCAT
Found at i:32243210 original size:37 final size:37
Alignment explanation
Indices: 32243132--32243219 Score: 88
Period size: 37 Copynumber: 2.4 Consensus size: 37
32243122 TACTCTATGG
* * * **
32243132 TGTGTAGGGTTGGATGGGTTGATTTTATCCCCATTGG
1 TGTGTAGGGATGGATGGGTCGATTTTATCCCCAATAA
*
32243169 TGTGTAGGGATGGGT-GGTCGATTTTATCCCCACATAA
1 TGTGTAGGGATGGATGGGTCGATTTTATCCCCA-ATAA
* *
32243206 TGTGTCGGGTTGGA
1 TGTGTAGGGATGGA
32243220 CGGAGTTGGT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
36 16 0.39
37 25 0.61
ACGTcount: A:0.16, C:0.12, G:0.35, T:0.36
Consensus pattern (37 bp):
TGTGTAGGGATGGATGGGTCGATTTTATCCCCAATAA
Found at i:32257225 original size:24 final size:24
Alignment explanation
Indices: 32257213--32257286 Score: 81
Period size: 24 Copynumber: 3.4 Consensus size: 24
32257203 ATCTTATTTT
32257213 TTAT-TTATTTATATAATTATTCA
1 TTATATTATTTATATAATTATTCA
* *
32257236 TTATATTATTTATATTATTATACA
1 TTATATTATTTATATAATTATTCA
32257260 -T-T-TTATTTATA-AATT-TT-A
1 TTATATTATTTATATAATTATTCA
32257278 TTATATTAT
1 TTATATTAT
32257287 ATATTTTACT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
18 1 0.02
19 2 0.05
20 4 0.09
21 13 0.30
22 1 0.02
23 5 0.12
24 17 0.40
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (24 bp):
TTATATTATTTATATAATTATTCA
Found at i:32257264 original size:17 final size:15
Alignment explanation
Indices: 32257216--32257294 Score: 60
Period size: 17 Copynumber: 5.3 Consensus size: 15
32257206 TTATTTTTTA
32257216 TTTATTTA-TATAA-
1 TTTATTTATTATAAT
* *
32257229 -TTATTCATTATATT
1 TTTATTTATTATAAT
32257243 ATTTATATTATTATACAT
1 -TTTAT-TTATTATA-AT
32257261 TTTATTTA-TA-AAT
1 TTTATTTATTATAAT
32257274 TTTATTATATTATATAT
1 TTTATT-TATTATA-AT
32257291 TTTA
1 TTTA
32257295 CTACGTACAT
Statistics
Matches: 52, Mismatches: 4, Indels: 16
0.72 0.06 0.22
Matches are distributed among these distances:
12 6 0.12
13 12 0.23
14 3 0.06
15 4 0.08
16 8 0.15
17 18 0.35
18 1 0.02
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTATTTATTATAAT
Found at i:32257286 original size:21 final size:22
Alignment explanation
Indices: 32257213--32257286 Score: 75
Period size: 21 Copynumber: 3.4 Consensus size: 22
32257203 ATCTTATTTT
32257213 TTAT-TTATTTATATAATTATTCA
1 TTATATTATTTATA-AATTATT-A
32257236 TTATATTATTTAT--ATTATTA
1 TTATATTATTTATAAATTATTA
* *
32257256 TACATTTTATTTATAAATT-TTA
1 T-TATATTATTTATAAATTATTA
32257278 TTATATTAT
1 TTATATTAT
32257287 ATATTTTACT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
20 2 0.05
21 22 0.51
22 4 0.09
23 7 0.16
24 8 0.19
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (22 bp):
TTATATTATTTATAAATTATTA
Found at i:32264139 original size:96 final size:96
Alignment explanation
Indices: 32263964--32264152 Score: 290
Period size: 96 Copynumber: 2.0 Consensus size: 96
32263954 TGTCCGAGGA
* * *
32263964 AGTCTTTCATAGATGGGAACGATGGAGTAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGA
1 AGTCTGTCATAGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGA
* * *
32264029 AACGCTGAAGCCAAGAGGGTAAAGAGGAACT
66 AACGCCGAACCCAAGAGGGCAAAGAGGAACT
* *
32264060 AGTCTGTCATTGAAGGGAATGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGA
1 AGTCTGTCATAGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG-
32264125 AAAC-CCGAACCCAAGAGGGCAAAGAGGA
65 AAACGCCGAACCCAAGAGGGCAAAGAGGA
32264153 GCAAAAGAAG
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
96 80 0.95
97 4 0.05
ACGTcount: A:0.36, C:0.17, G:0.33, T:0.14
Consensus pattern (96 bp):
AGTCTGTCATAGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGGA
AACGCCGAACCCAAGAGGGCAAAGAGGAACT
Found at i:32266933 original size:96 final size:96
Alignment explanation
Indices: 32266775--32266949 Score: 262
Period size: 96 Copynumber: 1.8 Consensus size: 96
32266765 TGCCATCGAT
** *
32266775 GGGAACGATGGAGTTGACAAGGAGCCCAAGAAGCTTAGTTCAAACAAGGGAAACACTAAAGCCAA
1 GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTAGTTCAAACAAAGGAAACACTAAAGCCAA
32266840 GAAGGCAAAGAGGAACAAGTCTATCATCGGA
66 GAAGGCAAAGAGGAACAAGTCTATCATCGGA
* * * *
32266871 GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAAGGAAA-AGCTGAAGCCA
1 GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTAGTTCAAACAAAGGAAACA-CTAAAGCCA
*
32266935 AGAGGGCAAAGAGGA
65 AGAAGGCAAAGAGGA
32266950 GTAAAAAGAA
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
95 1 0.01
96 69 0.99
ACGTcount: A:0.41, C:0.17, G:0.32, T:0.10
Consensus pattern (96 bp):
GGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTAGTTCAAACAAAGGAAACACTAAAGCCAA
GAAGGCAAAGAGGAACAAGTCTATCATCGGA
Found at i:32268805 original size:96 final size:96
Alignment explanation
Indices: 32268648--32268822 Score: 287
Period size: 96 Copynumber: 1.8 Consensus size: 96
32268638 TGTCATCGAT
* * * * *
32268648 GGGAACGATGGAGTAGACAATGAGCCCAAGAAGCTTTGTTCGAGCAAGGGAAACGCTGAAGCAAA
1 GGGAACGATGGAGTAGACAATGAGCCCAAGAAACTTGGTTCAAGCAAGGGAAAAGCCGAAGCAAA
32268713 AAGGGCAAAGAGGAACAAGTCTGTCACCAAA
66 AAGGGCAAAGAGGAACAAGTCTGTCACCAAA
*
32268744 GGGAACGATGGAGTAGACAATGAGCCCAAGAAACTTGGTTCAAGCAAGGGAAAAGCCGAAGCCAA
1 GGGAACGATGGAGTAGACAATGAGCCCAAGAAACTTGGTTCAAGCAAGGGAAAAGCCGAAGCAAA
*
32268809 GAGGGCAAAGAGGA
66 AAGGGCAAAGAGGA
32268823 GCAAAAAGAA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 72 1.00
ACGTcount: A:0.40, C:0.17, G:0.32, T:0.11
Consensus pattern (96 bp):
GGGAACGATGGAGTAGACAATGAGCCCAAGAAACTTGGTTCAAGCAAGGGAAAAGCCGAAGCAAA
AAGGGCAAAGAGGAACAAGTCTGTCACCAAA
Found at i:32276098 original size:15 final size:15
Alignment explanation
Indices: 32276078--32276108 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32276068 TAGAGTAAAA
32276078 GGTGTCAGCTAGGCG
1 GGTGTCAGCTAGGCG
*
32276093 GGTGTCAGGTAGGCG
1 GGTGTCAGCTAGGCG
32276108 G
1 G
32276109 CACCAATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.16, G:0.52, T:0.19
Consensus pattern (15 bp):
GGTGTCAGCTAGGCG
Found at i:32276131 original size:27 final size:27
Alignment explanation
Indices: 32276093--32276167 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
32276083 CAGCTAGGCG
32276093 GGTGTCAGGTAGGCGGCACCAATGAAA
1 GGTGTCAGGTAGGCGGCACCAATGAAA
*
32276120 GGTGTCAGGTAGGCGGCACCAATGAAG
1 GGTGTCAGGTAGGCGGCACCAATGAAA
* * *
32276147 GGTGTTAAGTAGGCGACACCA
1 GGTGTCAGGTAGGCGGCACCA
32276168 GTTGTGCCTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.28, C:0.19, G:0.37, T:0.16
Consensus pattern (27 bp):
GGTGTCAGGTAGGCGGCACCAATGAAA
Found at i:32276453 original size:61 final size:61
Alignment explanation
Indices: 32276376--32276507 Score: 255
Period size: 61 Copynumber: 2.2 Consensus size: 61
32276366 TATATAGTTT
*
32276376 GTTTAGTGTTATTTTTATGTTTTGGTTTAAAGTTATTTTGTTTATTGTGATTTGTTAGTAA
1 GTTTTGTGTTATTTTTATGTTTTGGTTTAAAGTTATTTTGTTTATTGTGATTTGTTAGTAA
32276437 GTTTTGTGTTATTTTTATGTTTTGGTTTAAAGTTATTTTGTTTATTGTGATTTGTTAGTAA
1 GTTTTGTGTTATTTTTATGTTTTGGTTTAAAGTTATTTTGTTTATTGTGATTTGTTAGTAA
32276498 GTTTTGTGTT
1 GTTTTGTGTT
32276508 TAGATTATTG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 70 1.00
ACGTcount: A:0.17, C:0.00, G:0.20, T:0.62
Consensus pattern (61 bp):
GTTTTGTGTTATTTTTATGTTTTGGTTTAAAGTTATTTTGTTTATTGTGATTTGTTAGTAA
Found at i:32279483 original size:64 final size:64
Alignment explanation
Indices: 32279377--32279526 Score: 266
Period size: 64 Copynumber: 2.4 Consensus size: 64
32279367 TGAGCTTATG
* *
32279377 TAATTTATATAA-AAAATTTATATTACAAAGTTTGTTCTAATTAGATTATGGTTGTAATGTATT
1 TAATTTATATAACAAAATTTATATTACAAAGTTGGTTCCAATTAGATTATGGTTGTAATGTATT
*
32279440 TAGTTTATATAACAAAATTTATATTACAAAGTTGGTTCCAATTAGATTATGGTTGTAATGTATT
1 TAATTTATATAACAAAATTTATATTACAAAGTTGGTTCCAATTAGATTATGGTTGTAATGTATT
32279504 TAATTTATATAACAAAATTTATA
1 TAATTTATATAACAAAATTTATA
32279527 CTATAAAACT
Statistics
Matches: 82, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
63 11 0.13
64 71 0.87
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.45
Consensus pattern (64 bp):
TAATTTATATAACAAAATTTATATTACAAAGTTGGTTCCAATTAGATTATGGTTGTAATGTATT
Found at i:32279957 original size:33 final size:33
Alignment explanation
Indices: 32279911--32279990 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
32279901 AGGAGTACCA
* * * **
32279911 TACTACGGCGGATACGACCTAGGAGAAGTGAAG
1 TACTGCGGTGGATACGACCCAAAAGAAGTGAAG
32279944 TACTGCGGTGGATACGACCCAAAAGAAGTGAAG
1 TACTGCGGTGGATACGACCCAAAAGAAGTGAAG
*
32279977 TACTGCGATGGATA
1 TACTGCGGTGGATA
32279991 TGGGCCGAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.17
Consensus pattern (33 bp):
TACTGCGGTGGATACGACCCAAAAGAAGTGAAG
Found at i:32280038 original size:33 final size:32
Alignment explanation
Indices: 32280001--32280109 Score: 85
Period size: 33 Copynumber: 3.3 Consensus size: 32
32279991 TGGGCCGAGG
32280001 GGAGTGTTGTAATGCGATGGATACAGGCTAGGA
1 GGAGTGTTGTAATGCGATGGATACAGGC-AGGA
* * * * * * *
32280034 GGAGTGCTATACTGTGGTGGATACGGGCCGGA
1 GGAGTGTTGTAATGCGATGGATACAGGCAGGA
* * * *
32280066 GGAGTGTTGTACTG-TAGTGGATACTAGCCGGGA
1 GGAGTGTTGTAATGCGA-TGGATAC-AGGCAGGA
32280099 GGAGTGTTGTA
1 GGAGTGTTGTA
32280110 CTACAGTGGA
Statistics
Matches: 60, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
32 22 0.37
33 38 0.63
ACGTcount: A:0.22, C:0.11, G:0.41, T:0.26
Consensus pattern (32 bp):
GGAGTGTTGTAATGCGATGGATACAGGCAGGA
Found at i:32280110 original size:33 final size:32
Alignment explanation
Indices: 32280031--32280122 Score: 112
Period size: 32 Copynumber: 2.8 Consensus size: 32
32280021 ATACAGGCTA
* * * *
32280031 GGAGGAGTGCTATACTGTGGTGGATACGGGCC
1 GGAGGAGTGTTGTACTGTAGTGGATACGAGCC
*
32280063 GGAGGAGTGTTGTACTGTAGTGGATACTAGCC
1 GGAGGAGTGTTGTACTGTAGTGGATACGAGCC
**
32280095 GGGAGGAGTGTTGTACTACAGTGGATAC
1 -GGAGGAGTGTTGTACTGTAGTGGATAC
32280123 AACCCAACGA
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
32 27 0.52
33 25 0.48
ACGTcount: A:0.22, C:0.13, G:0.40, T:0.25
Consensus pattern (32 bp):
GGAGGAGTGTTGTACTGTAGTGGATACGAGCC
Found at i:32281715 original size:33 final size:33
Alignment explanation
Indices: 32281673--32281765 Score: 125
Period size: 33 Copynumber: 2.8 Consensus size: 33
32281663 CTTTGGGTAG
*
32281673 TATCCACCGCAGTACAACACTCCTCCCGGCCCA
1 TATCCACCGCAGTACAGCACTCCTCCCGGCCCA
* * * *
32281706 TATCCACCGCAGTATAGTACTTCTCCCGGCCCG
1 TATCCACCGCAGTACAGCACTCCTCCCGGCCCA
*
32281739 TATCCACCGCATTACAGCACTCC-CCCG
1 TATCCACCGCAGTACAGCACTCCTCCCG
32281766 ACCTGTATCC
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
32 4 0.08
33 47 0.92
ACGTcount: A:0.22, C:0.45, G:0.14, T:0.19
Consensus pattern (33 bp):
TATCCACCGCAGTACAGCACTCCTCCCGGCCCA
Found at i:32282257 original size:69 final size:64
Alignment explanation
Indices: 32282196--32282352 Score: 210
Period size: 64 Copynumber: 2.5 Consensus size: 64
32282186 CAAACTTAGT
* * *
32282196 TTTATACTATAAATTATGTTATATAAATTAAATATATTACAACCATAACCTAATTGGAACAAAC
1 TTTATAATATAAATTATGTTATATAAATTAAACACATTACAACCATAACCTAATTGGAACAAAC
* * *
32282260 TTTATAATATAAATTTTGTTATATAAATTAAACACATTACAACCATAATCTAATTGGAA-AAAA
1 TTTATAATATAAATTATGTTATATAAATTAAACACATTACAACCATAACCTAATTGGAACAAAC
* * *
32282323 TATTGTAATATAACTT-TTTTATATAAATTA
1 T-TTATAATATAAATTATGTTATATAAATTA
32282353 CATAAGCTCA
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
63 17 0.20
64 66 0.80
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.39
Consensus pattern (64 bp):
TTTATAATATAAATTATGTTATATAAATTAAACACATTACAACCATAACCTAATTGGAACAAAC
Found at i:32282833 original size:46 final size:46
Alignment explanation
Indices: 32282766--32282858 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
32282756 GTTTCAGAGA
32282766 TAAACTCCATAAGACCTAGGTGGTATACCGGGTCAATGACCGATGG
1 TAAACTCCATAAGACCTAGGTGGTATACCGGGTCAATGACCGATGG
*
32282812 TAAACTCCATAGGACCTAGGTGGTATACCGGGTCAATGACCGATGG
1 TAAACTCCATAAGACCTAGGTGGTATACCGGGTCAATGACCGATGG
32282858 T
1 T
32282859 CTTCGTAACT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.23
Consensus pattern (46 bp):
TAAACTCCATAAGACCTAGGTGGTATACCGGGTCAATGACCGATGG
Found at i:32283794 original size:22 final size:22
Alignment explanation
Indices: 32283766--32283811 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
32283756 CTTTTTCCCG
32283766 GTTGTAGTTGGTCATCCGGGCT
1 GTTGTAGTTGGTCATCCGGGCT
*
32283788 GTTGTAGTTGGTCATTCGGGCT
1 GTTGTAGTTGGTCATCCGGGCT
32283810 GT
1 GT
32283812 AATAAAGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.09, C:0.15, G:0.37, T:0.39
Consensus pattern (22 bp):
GTTGTAGTTGGTCATCCGGGCT
Found at i:32284943 original size:12 final size:12
Alignment explanation
Indices: 32284926--32284952 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32284916 TTGATATCCT
32284926 TCTCCCACAACG
1 TCTCCCACAACG
32284938 TCTCCCACAACG
1 TCTCCCACAACG
32284950 TCT
1 TCT
32284953 AACAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.22
Consensus pattern (12 bp):
TCTCCCACAACG
Found at i:32285242 original size:27 final size:27
Alignment explanation
Indices: 32285210--32285261 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
32285200 AAAATAGTCT
*
32285210 ATTTCTAACAATATAAAATTTATTTTC
1 ATTTCTAACAATATAAAATATATTTTC
* *
32285237 ATTTCTAATAATATCAAATATATTT
1 ATTTCTAACAATATAAAATATATTT
32285262 AAAAAATTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (27 bp):
ATTTCTAACAATATAAAATATATTTTC
Found at i:32285853 original size:2 final size:2
Alignment explanation
Indices: 32285846--32286461 Score: 315
Period size: 2 Copynumber: 323.0 Consensus size: 2
32285836 AAAACCAGAA
* * * *
32285846 AG AG AG AG AG AG AG AG AG GG AG CG AG A- AG -G GG AG AG AA AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * *
32285886 AG CG AG AG AG AG AG AG AG AG -G GG GG AG A- ATG AG AG GG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A-G AG AG AG AG AG
* * * *
32285927 CG AG A- AA AG -G AG AG CA- AG AG GG AG AG AG CG AG AG -G AG AG
1 AG AG AG AG AG AG AG AG -AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * *
32285966 AG AG GG GG AG AG AG AG AG AG AG GG AA AG AG GG TG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * *
32286008 GG AG AG AG AG -G AG -G AG -G AA AG GG AG AG GG AG AG AA AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * *
32286047 -G AG -G AG AG TG AG GG AA AG GG AG AG -G A- AG AG GG AG AG -G
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * *
32286084 AG AG GG AG AG GG GG AG AG AG AG AG AG AG AA AG AG AG GG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * *
32286126 GG AG CG AG AG A- AG GG AG AG -G AG AG AG AG AG AG AG AG AG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * * *
32286166 AG A- AG -G AG AG GG AG GG AG AG GG AG GG AG AG GG AG AG GG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * *
32286206 AG AG AG AG AG AA AG AG AG GG AG AG GG AG CG AG AG A- AG -G GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* *
32286246 AG AG AG AG AG AG AG AG AG AG AG AG AG GG AG A- AG -G AG AG GG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * * *
32286286 AG -G GG AG AG AG AG GG AG AG CG AG AG GG GG AG GG GG AG -G A-
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * ** * *
32286325 AG AG CG AG AG AG GG AG AG AG CT AG AG AG GG AG AG AG AG GG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * *
32286367 AG GG AG GG AG AG GG AG AG AG AG AG AG AG AG AG AG -G GG GG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* * * * * *
32286408 AA AG -G GG A- AG AG GG AG AT AG AG AA AG CG AG AG A- AG -G AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
32286446 AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG
32286462 TGAGTGAGTG
Statistics
Matches: 452, Mismatches: 128, Indels: 68
0.70 0.20 0.10
Matches are distributed among these distances:
1 32 0.07
2 418 0.92
3 2 0.00
ACGTcount: A:0.41, C:0.02, G:0.57, T:0.01
Consensus pattern (2 bp):
AG
Found at i:32291956 original size:17 final size:17
Alignment explanation
Indices: 32291908--32291970 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 17
32291898 CCCACAGAAT
*
32291908 ATTTTTTTAT-TTTTTA
1 ATTTTTTTGTATTTTTA
32291924 ATTTTTTTCGTA-TTTT-
1 ATTTTTTT-GTATTTTTA
32291940 ATTTTTTTGTACTTTTTCA
1 ATTTTTTTGTA-TTTTT-A
32291959 ATCATTTTTTGT
1 AT--TTTTTTGT
32291971 GGGAAATTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
15 3 0.08
16 16 0.42
17 9 0.24
19 2 0.05
21 8 0.21
ACGTcount: A:0.16, C:0.06, G:0.05, T:0.73
Consensus pattern (17 bp):
ATTTTTTTGTATTTTTA
Found at i:32292350 original size:13 final size:14
Alignment explanation
Indices: 32292310--32292350 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
32292300 ATCCAAGTCC
* *
32292310 AATAAAACAATTAA
1 AATAAAATAACTAA
32292324 AAT-AAATAACTAA
1 AATAAAATAACTAA
32292337 AATAAAATAA-TAA
1 AATAAAATAACTAA
32292350 A
1 A
32292351 TCAAAGATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 15 0.62
14 9 0.38
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (14 bp):
AATAAAATAACTAA
Found at i:32295969 original size:11 final size:11
Alignment explanation
Indices: 32295953--32296013 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
32295943 ATAATCAAAT
32295953 GAAAGAAAAAA
1 GAAAGAAAAAA
* *
32295964 GAAAGAGAATA
1 GAAAGAAAAAA
* **
32295975 GAAACAAAACT
1 GAAAGAAAAAA
*
32295986 GAAGGAAAAAA
1 GAAAGAAAAAA
*
32295997 AAAAGAAAGAAA
1 GAAAGAAA-AAA
32296009 GAAAG
1 GAAAG
32296014 GAAGGAGAAA
Statistics
Matches: 36, Mismatches: 13, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
11 29 0.81
12 7 0.19
ACGTcount: A:0.72, C:0.03, G:0.21, T:0.03
Consensus pattern (11 bp):
GAAAGAAAAAA
Found at i:32299074 original size:5 final size:5
Alignment explanation
Indices: 32299064--32299094 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
32299054 CTCAAAAATT
32299064 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA T
32299095 CGAATGCTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:32299671 original size:19 final size:19
Alignment explanation
Indices: 32299627--32299673 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
32299617 CTTCCAAAAA
*
32299627 ATGATTTTTAAAAAATGTG
1 ATGATTTTTAAAAAATCTG
*
32299646 TTGATTTTTCAAAAAATCTG
1 ATGATTTTT-AAAAAATCTG
32299666 AT-ATTTTT
1 ATGATTTTT
32299674 TTATGTTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.49
Consensus pattern (19 bp):
ATGATTTTTAAAAAATCTG
Found at i:32303272 original size:72 final size:73
Alignment explanation
Indices: 32303054--32303891 Score: 871
Period size: 75 Copynumber: 11.5 Consensus size: 73
32303044 AGTGTGTGAT
* * * * *
32303054 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTCAAAGATAGAAATTGAAAATA
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA---TTTTTTGAAA-ACAGAAATTGAAATTA
*
32303119 CCTCAGCATGTGAAC
62 CCTCAGC--GTG-TC
* * *
32303134 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA---TTTTTTGAAAACAGAAATTGAAATTAC
***
32303198 CTCAATATGTC
63 CTCAGCGTGTC
* * * * *
32303209 TTGAGGCTCAACTCATTTCTTGCAATATAAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTC
32303273 AGCGTGTC
66 AGCGTGTC
* * * *
32303281 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAATTACC
*
32303346 TCAGCATGTC
64 TCAGCGTGTC
* * * *
32303356 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTATCTC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTC
32303420 AGCGTGTC
66 AGCGTGTC
* *
32303428 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-TTTTTTGAA-AACAGAAATTGAAATTACC
32303493 TCAGCGTGTC
64 TCAGCGTGTC
* * * * *
32303503 TTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAATTACC
*
32303568 TCAACGTGTC
64 TCAGCGTGTC
* * * *
32303578 TTGAGGCTCAACTCATTTCTTGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTC
32303642 AGCGTGTC
66 AGCGTGTC
* *
32303650 CCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAATTACCT
*
32303715 TAGCGTGTC
65 CAGCGTGTC
*
32303724 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTT---------AA---AAA-TACCT
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT-TTGAAAACAGAAATTGAAATTACCT
*
32303776 CAGCGCGTC
65 CAGCGTGTC
* * *
32303785 CTGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA-------ACATACAGAAAATTGACAA-TAC
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTGA-AAACAG-AAATTGA-AATTAC
32303842 CTCAGCGTGTC
63 CTCAGCGTGTC
* * *
32303853 CCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTT
32303892 GAAAAAGTAG
Statistics
Matches: 657, Mismatches: 72, Indels: 66
0.83 0.09 0.08
Matches are distributed among these distances:
61 46 0.07
62 3 0.00
64 2 0.00
65 2 0.00
67 1 0.00
68 47 0.07
72 175 0.27
73 20 0.03
74 84 0.13
75 181 0.28
76 32 0.05
78 20 0.03
79 43 0.07
80 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (73 bp):
CTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAATTACCTC
AGCGTGTC
Found at i:32303367 original size:147 final size:147
Alignment explanation
Indices: 32303059--32303891 Score: 906
Period size: 147 Copynumber: 5.7 Consensus size: 147
32303049 GTGATCTGAA
* * * * *
32303059 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTCAAAGATAGAAATTGAAAATACCTCA
1 GCTCAACTCATCTCTCGCAATATGAGTTGA---TATTTTGAAA-ACAGAAATTGAAATTACCTCA
* *
32303124 GCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAA
62 GC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAACAGAAA
**
32303188 TTGAAAATACCTCAATATGTCTTGAG
122 TTGAAAATACCTCAGCATGTCTTGAG
* * *
32303214 GCTCAACTCATTTCTTGCAATATAAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
1 GCTCAACTCATCTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
* *
32303278 GTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAAT
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAAT
32303343 ACCTCAGCATGTCTTGAG
130 ACCTCAGCATGTCTTGAG
* *
32303361 GCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTATCTCAGCGT
1 GCTCAACTCATCTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
** * *
32303425 GTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATT
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AACAGAAATTGAAAAT
*
32303490 ACCTCAGCGTGTCTTGAG
130 ACCTCAGCATGTCTTGAG
* * * * * *
32303508 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAAC
1 GCTCAACTCATCTCTCGCAATATGAGTTGA-TATTTTGAAA-ACAGAAATTGAAATTACCTCAGC
* ** * * *
32303573 GTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAAT
64 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAA
* **
32303636 TACCTCAGCGTGTCCCGAG
129 TACCTCAGCATGTCTTGAG
* * *
32303655 GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTTAGCG
1 GCTCAACTCATCTCTCGCAATATGAGTTGA-TATTTTGAAAACAGAAATTGAAATTACCTCAGCG
*
32303720 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTT-----C-----TTAAAAAT
65 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAT
** *
32303772 ACCTCAGCGCGTCCTGAG
130 ACCTCAGCATGTCTTGAG
* * * *
32303790 GCTCAGCTCACCTCTCGCAATATGAGTTGA-A-----CATACAGAAAATTGACAA-TACCTCAGC
1 GCTCAACTCATCTCTCGCAATATGAGTTGATATTTTGAAAACAG-AAATTGA-AATTACCTCAGC
* *
32303848 GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
64 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
32303892 GAAAAAGTAG
Statistics
Matches: 606, Mismatches: 61, Indels: 45
0.85 0.09 0.06
Matches are distributed among these distances:
128 4 0.01
129 53 0.09
130 2 0.00
132 1 0.00
135 50 0.08
140 1 0.00
145 4 0.01
146 66 0.11
147 264 0.44
148 42 0.07
149 8 0.01
150 78 0.13
151 7 0.01
155 26 0.04
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (147 bp):
GCTCAACTCATCTCTCGCAATATGAGTTGATATTTTGAAAACAGAAATTGAAATTACCTCAGCGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATA
CCTCAGCATGTCTTGAG
Found at i:32303522 original size:222 final size:221
Alignment explanation
Indices: 32303054--32303762 Score: 1046
Period size: 222 Copynumber: 3.2 Consensus size: 221
32303044 AGTGTGTGAT
* * * *
32303054 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTCAAAGATAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAAAAATTGAAAATA
* ** * *
32303119 CCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAAC
64 CCTCAGCATGT---CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----ATTTTGAAAAC
* *** * * * *
32303183 AGAAATTGAAAATACCTCAATATGTCTTGAGGCTCAACTCATTTCTTGCAATATAAGTTGA-ATT
122 AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
*
32303247 TTGAA-AACAGAAATTGAAATTACCTCAGCGTGTC
187 TTTAACAACAGAAATTGAAATTACCTCAGCGTGTC
*
32303281 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
32303346 TCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
66 TCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
*
32303411 AATTATCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAA
131 AATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTTTAACAA
32303476 CAGAAATTGAAATTACCTCAGCGTGTC
195 CAGAAATTGAAATTACCTCAGCGTGTC
* *
32303503 TTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
* * *
32303568 TCAACGTGTCTTGAGGCTCAACTCATTTCTTGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
66 TCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
* * *
32303633 AATTACCTCAGCGTGTCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGACAAC
131 AATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAACAAC
*
32303698 AGAAATTGAAATTACCTTAGCGTGTC
196 AGAAATTGAAATTACCTCAGCGTGTC
32303724 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
32303763 CTTAAAAATA
Statistics
Matches: 445, Mismatches: 33, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
219 63 0.14
221 80 0.18
222 203 0.46
223 30 0.07
225 36 0.08
227 33 0.07
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (221 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
TCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGA
AATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAACAAC
AGAAATTGAAATTACCTCAGCGTGTC
Found at i:32303805 original size:61 final size:62
Alignment explanation
Indices: 32303710--32303891 Score: 213
Period size: 68 Copynumber: 2.9 Consensus size: 62
32303700 AAATTGAAAT
*
32303710 TACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTC-TTAAAAA
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCATTAAAAA
* * ** * *
32303771 TACCTCAGCGCGTCCTGAGGCTCAGCTCACCTCTCGCAATATGAGTTGAACATACAGAAAATTGA
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTC-----ATTAA
*
32303836 CAA
60 AAA
* *
32303839 TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
32303892 GAAAAAGTAG
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
61 45 0.45
62 3 0.03
67 2 0.02
68 49 0.49
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (62 bp):
TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCATTAAAAA
Found at i:32303872 original size:129 final size:128
Alignment explanation
Indices: 32303636--32303891 Score: 345
Period size: 129 Copynumber: 1.9 Consensus size: 128
32303626 AAATTGAAAT
* *
32303636 TACCTCAGCGTGTCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGACAACAGA
1 TACCTCAGCGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA------T-ACAACAGA
* * *
32303701 AATTGAAATTACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTT
59 AATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTT
32303766 AAAAA
124 AAAAA
* *
32303771 TACCTCAGCGCGTCCTGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA-ACATACAGAAAATTG
1 TACCTCAGCGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATACA-ACAG-AAATTG
32303835 ACAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
64 A-AATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
32303892 GAAAAAGTAG
Statistics
Matches: 111, Mismatches: 7, Indels: 12
0.85 0.05 0.09
Matches are distributed among these distances:
127 3 0.03
128 4 0.04
129 57 0.51
130 2 0.02
135 45 0.41
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (128 bp):
TACCTCAGCGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATACAACAGAAATTGAA
ATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCTTAAAAA
Found at i:32303960 original size:54 final size:54
Alignment explanation
Indices: 32303860--32303965 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
32303850 GTCCCGAGGC
*
32303860 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
32303914 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
32303966 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:32304168 original size:139 final size:140
Alignment explanation
Indices: 32303828--32304301 Score: 862
Period size: 139 Copynumber: 3.4 Consensus size: 140
32303818 GAACATACAG
* * *
32303828 AAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTG
1 AAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTG
32303893 AAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAA
66 AAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAA
32303958 ATTGAAAACA
131 ATTGAAAACA
*
32303968 GAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTG
1 AAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTG
32304033 AAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTG-TTCTTGAACAACGTAA
66 AAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAA
32304097 ATTGAAAACA
131 ATTGAAAACA
*
32304107 AAAATTGAAAATACCTCAGCGTGACCTAAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTG
1 AAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTG
* *
32304172 -AAAAGTAGAAATTAAAAGGTTCAGCCCACCTCTCGCAATATGAGTTGATTCTAGAACAACGTAA
66 AAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAA
32304236 ATTGAAAACA
131 ATTGAAAACA
*
32304246 GAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
32304302 TTGAAATTAA
Statistics
Matches: 323, Mismatches: 10, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
138 46 0.14
139 168 0.52
140 109 0.34
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.24
Consensus pattern (140 bp):
AAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTG
AAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAA
ATTGAAAACA
Found at i:32304327 original size:72 final size:71
Alignment explanation
Indices: 32304234--32304399 Score: 237
Period size: 72 Copynumber: 2.3 Consensus size: 71
32304224 AGAACAACGT
* * * *
32304234 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGA-CCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGT-ACCCCGAGGCTCAACTCACCTCTAGCAATA
32304298 TGAGTTG
65 TGAGTTG
32304305 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTAGCAATA
32304370 TGAGTTG
65 TGAGTTG
**
32304377 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
32304400 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
71 13 0.15
72 69 0.80
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTACCCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:32304494 original size:122 final size:124
Alignment explanation
Indices: 32304274--32304520 Score: 383
Period size: 122 Copynumber: 2.0 Consensus size: 124
32304264 GCGTGACCTG
* *
32304274 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
32304339 TACCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TACCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * *
32304399 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* * *
32304461 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 TACCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
32304520 A
1 A
32304521 ATACCTCAAC
Statistics
Matches: 113, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
121 16 0.14
122 62 0.55
123 7 0.06
124 1 0.01
125 27 0.24
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.24
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TACCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:32304542 original size:71 final size:70
Alignment explanation
Indices: 32304399--32304573 Score: 219
Period size: 71 Copynumber: 2.5 Consensus size: 70
32304389 AAAAATTAAA
* * * * * *
32304399 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
32304463 CCCCG
66 CCCCG
*
32304468 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
** **
32304533 TTCTTG
65 GCCCCG
32304539 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
32304574 CCCTTGAAAA
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.07
71 60 0.65
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:32314660 original size:29 final size:29
Alignment explanation
Indices: 32314621--32314699 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
32314611 CTTAATAATC
32314621 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCC-TGTACATTTA
*
32314651 AACTCGCACACTTAGTG-CTGTACAATTTA
1 AACCCGCACACTTAGTGCCTGTAC-ATTTA
32314680 AACCCGCACACTTAGTGCCT
1 AACCCGCACACTTAGTGCCT
32314700 ATCTCATGAC
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
27 5 0.11
28 1 0.02
29 33 0.75
30 5 0.11
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCTGTACATTTA
Found at i:32329895 original size:26 final size:26
Alignment explanation
Indices: 32329866--32329974 Score: 191
Period size: 26 Copynumber: 4.2 Consensus size: 26
32329856 TGGTACAAAT
32329866 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
32329892 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32329918 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
32329944 TGATAATGGGTTATGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32329970 TGATA
1 TGATA
32329975 GGCATTTCAT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:32335324 original size:28 final size:28
Alignment explanation
Indices: 32335284--32335355 Score: 98
Period size: 26 Copynumber: 2.7 Consensus size: 28
32335274 TTGATTTCTC
*
32335284 TTTTTTTT--TTTTTGTATAACTTGCA-
1 TTTTTTTTACTTTTTTTATAACTTGCAT
32335309 TTTTTTTTAC-TTTTTTATAACTTGCATT
1 TTTTTTTTACTTTTTTTATAACTTGCA-T
32335337 TTTTTTTTACTTTTTTTAT
1 TTTTTTTTACTTTTTTTAT
32335356 GTGTCTTCAA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
25 8 0.20
26 15 0.37
28 10 0.24
29 8 0.20
ACGTcount: A:0.15, C:0.08, G:0.04, T:0.72
Consensus pattern (28 bp):
TTTTTTTTACTTTTTTTATAACTTGCAT
Found at i:32338081 original size:20 final size:20
Alignment explanation
Indices: 32338038--32338081 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
32338028 ATAAGGATTG
* * *
32338038 AATCGGATCGGATCAGATCG
1 AATCGAATCGAATCAGATCA
*
32338058 AATCGAATCGAATCATATCA
1 AATCGAATCGAATCAGATCA
32338078 AATC
1 AATC
32338082 CCTTGAATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (20 bp):
AATCGAATCGAATCAGATCA
Found at i:32344703 original size:13 final size:14
Alignment explanation
Indices: 32344685--32344713 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32344675 AAATGACAAA
32344685 AATAAAAAAT-TTT
1 AATAAAAAATATTT
32344698 AATAAAAAATATTT
1 AATAAAAAATATTT
32344712 AA
1 AA
32344714 AACTTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
AATAAAAAATATTT
Found at i:32344723 original size:18 final size:19
Alignment explanation
Indices: 32344702--32344744 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
32344692 AATTTTAATA
32344702 AAAAATATT-TAAAACTTT
1 AAAAATATTGTAAAACTTT
*
32344720 AAAAA-ATTGTAAAATTTT
1 AAAAATATTGTAAAACTTT
32344738 ATAAAAT
1 A-AAAAT
32344745 CATAAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 3 0.14
18 14 0.67
19 4 0.19
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAAATATTGTAAAACTTT
Found at i:32345058 original size:9 final size:9
Alignment explanation
Indices: 32345046--32345141 Score: 74
Period size: 9 Copynumber: 10.4 Consensus size: 9
32345036 GTTCTATATA
32345046 TTTTATAAT
1 TTTTATAAT
32345055 TTTTATAAAAT
1 TTTTAT--AAT
32345066 TTTTATAAT
1 TTTTATAAT
32345075 TTTTA-AATT
1 TTTTATAA-T
32345084 TTTTATTAAT
1 TTTTA-TAAT
**
32345094 ATTCAATAA-
1 -TTTTATAAT
* *
32345103 TTTTGTAAC
1 TTTTATAAT
32345112 TTTTATTAAT
1 TTTTA-TAAT
32345122 TTTTAT--T
1 TTTTATAAT
32345129 TTTTATAAT
1 TTTTATAAT
32345138 TTTT
1 TTTT
32345142 TGCCACATGT
Statistics
Matches: 70, Mismatches: 7, Indels: 20
0.72 0.07 0.21
Matches are distributed among these distances:
7 7 0.10
8 7 0.10
9 30 0.43
10 12 0.17
11 14 0.20
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:32348307 original size:26 final size:27
Alignment explanation
Indices: 32348246--32348308 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 27
32348236 TATCTGAAGC
* *
32348246 TCCTGATTAATGGCTCTTTGTGAGCTT
1 TCCTGATTAAAGGCTCTTCGTGAGCTT
*
32348273 TCC-GTTTAAAGGCTCTTCGTGAGC-T
1 TCCTGATTAAAGGCTCTTCGTGAGCTT
32348298 TCCTGATTAAA
1 TCCTGATTAAA
32348309 ATTTCTATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
25 4 0.13
26 24 0.77
27 3 0.10
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (27 bp):
TCCTGATTAAAGGCTCTTCGTGAGCTT
Found at i:32352874 original size:92 final size:92
Alignment explanation
Indices: 32352762--32352931 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
32352752 GCCCATAAGT
* *
32352762 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32352827 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
32352854 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32352919 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32352932 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:32352928 original size:46 final size:46
Alignment explanation
Indices: 32352754--32352928 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
32352744 TGTAACCCGC
* * *
32352754 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
32352800 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* * *
32352846 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
32352892 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32352929 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32352947 original size:46 final size:46
Alignment explanation
Indices: 32352759--32352947 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
32352749 CCCGCCCATA
* ** * *
32352759 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
32352804 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
32352852 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
32352897 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
32352943 AGTGA
1 AGTGA
32352948 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:32362696 original size:93 final size:93
Alignment explanation
Indices: 32362581--32362751 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
32362571 GCCCATAAGT
* * *
32362581 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCAGACTCAACTCAA
32362646 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
32362674 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATACATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCAGACTCAACTCAA
32362739 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32362752 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATACATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:32362748 original size:46 final size:46
Alignment explanation
Indices: 32362574--32362748 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
32362564 GTAACCCGCC
* * * *
32362574 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATA
* *
32362620 CATAAGTGAACTCAGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TA
* *
32362666 CATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATA
1 CA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATA
32362713 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
32362749 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 65 0.60
47 31 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATA
Found at i:32378279 original size:26 final size:26
Alignment explanation
Indices: 32378250--32378301 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
32378240 AAATGAATTA
32378250 AAAGACAAATTTTAAACCCCAAATGT
1 AAAGACAAATTTTAAACCCCAAATGT
*
32378276 AAAGATAAATTTTAAACCCCAAATGT
1 AAAGACAAATTTTAAACCCCAAATGT
32378302 GTCACTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.50, C:0.17, G:0.08, T:0.25
Consensus pattern (26 bp):
AAAGACAAATTTTAAACCCCAAATGT
Found at i:32379215 original size:31 final size:31
Alignment explanation
Indices: 32379178--32379382 Score: 320
Period size: 31 Copynumber: 6.6 Consensus size: 31
32379168 TGTGTACAAT
32379178 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
32379209 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
32379240 GTGAAAAGTAGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
*
32379271 ATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
32379302 GTGAAAAGTAGTAGCTTCGACTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
32379333 GTGAAAAGTGGTAGCTCCAGCTACTTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
32379364 GTGAATAGTGATAGCTTCG
1 GTGAAAAGTGGTAGCTTCG
32379383 ACTATCGAAT
Statistics
Matches: 157, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 157 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:32379405 original size:29 final size:29
Alignment explanation
Indices: 32379364--32379429 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
32379354 TACTTGATCA
* *
32379364 GTGAATAGTGATAGCTTCGACTATCGAAT
1 GTGAAAAGGGATAGCTTCGACTATCGAAT
* *
32379393 GTGAAAAGGGATAGCTTTGGCTATCGAAT
1 GTGAAAAGGGATAGCTTCGACTATCGAAT
32379422 GTGAAAAG
1 GTGAAAAG
32379430 CTTAGGTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (29 bp):
GTGAAAAGGGATAGCTTCGACTATCGAAT
Found at i:32379496 original size:32 final size:32
Alignment explanation
Indices: 32379423--32379577 Score: 168
Period size: 32 Copynumber: 4.8 Consensus size: 32
32379413 CTATCGAATG
* *
32379423 TGAAAAGCTTAGGTATACTTTGTGTATATCACA
1 TGAAAAGGTTAGGTATACTTTGTGTATA-CACT
* * *
32379456 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACACT
* * *
32379488 TGAAAAGGTTATGTACACTTTGTGTCTACACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACACT
**
32379520 TGAAAAGGAAAGGTATACTTTGTGTATAC-CAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACAC-T
**
32379552 ATGAAAAGGAAAGGTATACTTTGTGT
1 -TGAAAAGGTTAGGTATACTTTGTGT
32379578 GTACCACTCA
Statistics
Matches: 109, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
31 1 0.01
32 59 0.54
33 49 0.45
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.35
Consensus pattern (32 bp):
TGAAAAGGTTAGGTATACTTTGTGTATACACT
Found at i:32379622 original size:97 final size:95
Alignment explanation
Indices: 32379433--32379630 Score: 209
Period size: 97 Copynumber: 2.0 Consensus size: 95
32379423 TGAAAAGCTT
* ** * * *
32379433 AGGTATACTTTGTGTATATCACATGAAAAGGTTATGTACACTTTGTGTGTACACTTGAAAAGGTT
1 AGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACTAGAAAA-G-A
* *** * *
32379498 ATGTACACTTTGTGTCTACACTTGAAAAGGAA
64 ATGTACACCTCAAGTCTACAATTGAAAAGAAA
* *
32379530 AGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTGTACCACTCAGAAAA-A
1 AGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTA-CACT-AGAAAAGA
*
32379594 ATGTACACCTCAAGTGTACAATTGGAAAAGAAA
64 ATGTACACCTCAAGTCTACAATT-GAAAAGAAA
32379627 AGGT
1 AGGT
32379631 CCATCAGAAA
Statistics
Matches: 83, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
96 17 0.20
97 57 0.69
98 4 0.05
99 5 0.06
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (95 bp):
AGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACTAGAAAAGAAT
GTACACCTCAAGTCTACAATTGAAAAGAAA
Found at i:32384348 original size:10 final size:9
Alignment explanation
Indices: 32384322--32384375 Score: 63
Period size: 10 Copynumber: 5.7 Consensus size: 9
32384312 GGATGAGTGT
32384322 AAATTTAAA
1 AAATTTAAA
32384331 AAATTTAAA
1 AAATTTAAA
*
32384340 AACTATTAAA
1 AAAT-TTAAA
32384350 AAATTCTAAA
1 AAATT-TAAA
*
32384360 AAATATATAA
1 AAATTTA-AA
32384370 AAATTT
1 AAATTT
32384376 TCAAATGCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
9 15 0.39
10 23 0.61
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (9 bp):
AAATTTAAA
Found at i:32384350 original size:19 final size:20
Alignment explanation
Indices: 32384322--32384372 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
32384312 GGATGAGTGT
32384322 AAAT-TTAAAAAATT-TAAA
1 AAATATTAAAAAATTCTAAA
*
32384340 AACTATTAAAAAATTCTAAA
1 AAATATTAAAAAATTCTAAA
32384360 AAATATATAAAAA
1 AAATAT-TAAAAA
32384373 TTTTCAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 3 0.11
19 10 0.36
20 9 0.32
21 6 0.21
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (20 bp):
AAATATTAAAAAATTCTAAA
Found at i:32384791 original size:13 final size:14
Alignment explanation
Indices: 32384768--32384796 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32384758 AAGATTTGAG
32384768 TAAAAATATAAGTT
1 TAAAAATATAAGTT
32384782 TAAAAA-ATAAGTT
1 TAAAAATATAAGTT
32384795 TA
1 TA
32384797 GACAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (14 bp):
TAAAAATATAAGTT
Found at i:32386792 original size:35 final size:35
Alignment explanation
Indices: 32386752--32386821 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
32386742 TTGAAAGTTT
*
32386752 GGTTAGTCCCAGTTTTAGGGACTACATTGAATAAA
1 GGTTAGTCCCAGTTTTAGGGACTAAATTGAATAAA
***
32386787 GGTTAGTCTTGGTTTTAGGGACTAAATTGAATAAA
1 GGTTAGTCCCAGTTTTAGGGACTAAATTGAATAAA
32386822 TTGTAAAAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.34
Consensus pattern (35 bp):
GGTTAGTCCCAGTTTTAGGGACTAAATTGAATAAA
Found at i:32389790 original size:46 final size:45
Alignment explanation
Indices: 32389739--32389907 Score: 139
Period size: 46 Copynumber: 3.6 Consensus size: 45
32389729 CGTAGCCGAA
* *
32389739 GCATGTCCTAGACATGTCTTACACTGGCTTATGTCTCGAGGTCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCGAGG-CGAT
* * *
32389785 GCATGTCCCAAACATGTCTTACACTAGC--ACTCGTCTCAATGCTGAT
1 GCATGTCCCAGACATGTCTTACACTAGCTTA-T-GTCTCGAGGC-GAT
* * * *
32389831 GCCATGTCCCAGACATGGTTTTACACTAGCTCTCATAATGT-G-GCCGAT
1 G-CATGTCCCAGACAT-GTCTTACACTAGCT-T-AT-GTCTCGAGGCGAT
*
32389879 GCATGTCCTAGACATGTCTTACACTAGCT
1 GCATGTCCCAGACATGTCTTACACTAGCT
32389908 CACAATAACC
Statistics
Matches: 99, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 49 0.49
47 26 0.26
48 16 0.16
49 1 0.01
51 3 0.03
52 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACACTAGCTTATGTCTCGAGGCGAT
Found at i:32395032 original size:26 final size:26
Alignment explanation
Indices: 32395003--32395062 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
32394993 TCCCTTTGAA
* * *
32395003 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
32395029 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
32395057 CCATTC
1 TCATTC
32395063 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:32395048 original size:28 final size:28
Alignment explanation
Indices: 32395017--32395088 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
32395007 TCGATATTTT
*
32395017 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
32395045 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
32395073 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
32395089 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:32397184 original size:57 final size:57
Alignment explanation
Indices: 32397096--32397209 Score: 201
Period size: 57 Copynumber: 2.0 Consensus size: 57
32397086 GTGGACAAAA
*
32397096 ACAAGGCTATCTACAAAGCCTTTTTGCCACCCTTACTTGTACCAACCTAGACAACAT
1 ACAAGGCTATCTACAAAGCCTTTTTGCCACCCTTACTTGTACCAACCTACACAACAT
* *
32397153 ACAAGGCTATTTACCAAGCCTTTTTGCCACCCTTACTTGTACCAACCTACACAACAT
1 ACAAGGCTATCTACAAAGCCTTTTTGCCACCCTTACTTGTACCAACCTACACAACAT
32397210 CAACTAAAAC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.31, C:0.32, G:0.10, T:0.27
Consensus pattern (57 bp):
ACAAGGCTATCTACAAAGCCTTTTTGCCACCCTTACTTGTACCAACCTACACAACAT
Found at i:32397986 original size:48 final size:48
Alignment explanation
Indices: 32397913--32398245 Score: 278
Period size: 48 Copynumber: 6.9 Consensus size: 48
32397903 GGGTAAATTG
* *
32397913 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAGA
* * * * *
32397961 CTGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATCTCAATG-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAA-GA
* ** *
32398009 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCAAGA
* * * * *
32398057 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCAATA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAGA
* * * * * * * *
32398105 TCGATGCCATATCCCAGACTTAGTCTTACACTGGCTCTCACAACATTG-
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCA-AGA
* * * * ** *
32398153 TCGATGCCAAGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCAAGA
* * * * *
32398201 CCGATGCCATGTTCCAAACATGGCCTTACACTAGCGCACATATCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCA
32398246 CCCAAATGTC
Statistics
Matches: 225, Mismatches: 52, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
47 7 0.03
48 215 0.96
49 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAGA
Found at i:32398075 original size:96 final size:95
Alignment explanation
Indices: 32397911--32398232 Score: 337
Period size: 96 Copynumber: 3.4 Consensus size: 95
32397901 GTGGGTAAAT
* * * * * *
32397911 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-GTCGAGACTGATGCCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGCCATGTTC
32397975 CAAACATGGTCTTACACTAGCTCTCATCTCAA
65 CAAACATGGTCTTACACTAGCTCTCAT-TCAA
32398007 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTTCC
* *
32398072 AAACATGGTCTTACACTAGCGCACATATCAA
66 AAACATGGTCTTACACTAGCTCTCAT-TCAA
** * * * * ** * * *
32398103 TATCGATGCCATATCCCAGACTTAGTCTTACACTGGCTCTCACAACATTGTCGATGCCAAG-TCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTTCC
* *
32398167 TAGACATGGTCTTACACTGGCTCTCA-T-AA
66 -AAACATGGTCTTACACTAGCTCTCATTCAA
* * *
32398196 TGTGGCCGATGCCATGTTCCAAACATGGCCTTACACT
1 --T-GCCGATGCCATGTCCCAGACATGGTCTTACACT
32398233 AGCGCACATA
Statistics
Matches: 189, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
93 2 0.01
94 1 0.01
95 4 0.02
96 181 0.96
97 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (95 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTTCC
AAACATGGTCTTACACTAGCTCTCATTCAA
Found at i:32398172 original size:144 final size:144
Alignment explanation
Indices: 32397912--32398245 Score: 474
Period size: 144 Copynumber: 2.3 Consensus size: 144
32397902 TGGGTAAATT
* * * * * * *
32397912 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGACTGATGCCATGTCCCA
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCAAGACTGATGCCATATCCCA
* * *
32397977 AACATGGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTG
66 AACATAGTCTTACACTAGCTCTCATCACAATGCCGATGCCAAGTCCCAGACATGGTCTTACACTG
32398042 GCTCTCATAATGTG
131 GCTCTCATAATGTG
*
32398056 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCAATA-TCGATGCCATATCCC
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCAAGACT-GATGCCATATCCC
* * * * * *
32398120 AGACTTAGTCTTACACTGGCTCTCA-CAACATTGTCGATGCCAAGTCCTAGACATGGTCTTACAC
65 AAACATAGTCTTACACTAGCTCTCATC-ACAATGCCGATGCCAAGTCCCAGACATGGTCTTACAC
32398184 TGGCTCTCATAATGTG
129 TGGCTCTCATAATGTG
*
32398200 GCCGATGCCATGTTCCAAACATGGCCTTACACTAGCGCACATATCA
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCA
32398246 CCCAAATGTC
Statistics
Matches: 170, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
143 2 0.01
144 168 0.99
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (144 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCGCACATATCAAGACTGATGCCATATCCCA
AACATAGTCTTACACTAGCTCTCATCACAATGCCGATGCCAAGTCCCAGACATGGTCTTACACTG
GCTCTCATAATGTG
Found at i:32404441 original size:481 final size:482
Alignment explanation
Indices: 32403607--32412938 Score: 14575
Period size: 481 Copynumber: 19.6 Consensus size: 482
32403597 TAAACACTTC
*
32403607 TTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATA-TCG
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC-
32403671 CGAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
65 CGAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
* *
32403736 CTTTTAGGGTGGCACACAAATTCTTCCACGGGAGTATCGCCTAATATTTTCCTCTTTCCTTTCCA
130 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
32403801 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
195 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
* *
32403866 CTTGTAATCGCCCTAAAAAAAGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
260 CTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
32403931 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAA-TAGTTAGCTTAATTTCAT
325 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCAT
* * * *
32403995 TTAAAAATCAGTAAATAACATTCCAGAAAATAAAAATATTTTTTGAGAAATCAATTTTACGGTTT
390 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
32404060 TAAATATTTTTTGGTTAGAGTAAATATT
455 TAAATATTTTTTGGTTAGAGTAAATATT
*
32404088 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAAGATTCC
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
32404153 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
66 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
32404218 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* * * *
32404283 ACCACCAAATTCTACTTATCTTTGATAGAAGCTTCTCGATCACAATCCTAATTGTCTAAACCGAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* * *
32404348 TTGTAATCGCCCTAAAAAAAGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTTCGGGTGAATGCT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* * **
32404413 AAGAGTTAATCGAGTTTACTAGTCATTGTTTTTTTTTAAAAAAAAATTAGCCAGCTTAATTTCAT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTT-AAAAAAAATTAGTTAGCTTAATTTCAT
*
32404478 TTAAAATTCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
390 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
*
32404543 TAAATATTTTTTGGTTCGAGTAAATATT
455 TAAATATTTTTTGGTTAGAGTAAATATT
32404571 TTATTGAAAAATAAATTAAAA-TGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC
1 TTATTGAAAAATAAATTAAAATTG-AGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC
* * *
32404635 CGGAAAATAAAAATATTTTTTGAAAAATATCACTCACGAATATAATGAATACTAATACCCCCATC
65 CGAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
*
32404700 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTACTCTTTCCTTTCCA
130 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
* *
32404765 AACCACCAAATTCTTCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
195 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
* *
32404830 CTTGTAATTGCCCTAAAAATAGGTCTCCCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
260 CTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
* *
32404895 TAGGAGTTAATCGGCTTTACTAGTCATTGTTTTTTTTTAAAAAAAAATAGTTAGCTTAATTTCAT
325 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCAT
* * * *
32404960 TTAAAAATCAGTAAATAACATTCCAGAAAATAAAAATATTTTTTGAGAAATCAATTTTACGGTTT
390 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
*
32405025 TAAATATTTTTTGGTTAAAGTAAATATT
455 TAAATATTTTTTGGTTAGAGTAAATATT
*
32405053 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAAGATTCC
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
*
32405118 AAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
66 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
32405183 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* * * * *
32405248 ACCACCAAATTCTTCTTATCTTTTATAGAAGCTCCTCGATCACAATCCTAATAGTCAAAACCTAT
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* *
32405313 TTGTAATCACCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGGTTCCGAGTGAATGC
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATC-GGGTTCCGGGTGAATGC
**
32405378 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTAAAAAAAAAATTAGTTAGCTTAATTTCAT
325 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCAT
* * * *
32405443 TTAAAAATCGGTAAATAATATTCCGAAAAATAAAAATATTTATTGAGAAATTAATTTTATGATTT
390 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
32405508 TAAA-AGTTTTTTGGTTAGAGT-AATATT
455 TAAATA-TTTTTTGGTTAGAGTAAATATT
* **
32405535 TTATTGAAAAGTAAATTAAAATAAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
*
32405600 GGAAAATAAAAATATTGTTT-GAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
66 GAAAAATAAAAATATT-TTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
32405664 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
130 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
32405729 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
195 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
* *
32405794 CTTGTAATCGCCCTAAAAAAAGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
260 CTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
*
32405859 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTAAAAAAAAATTAGTTAGCTTAATTTCAT
325 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCAT
*
32405924 TTAAAAATCGGTAAATAATATTCCAGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
390 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
32405989 TAAATATTTTTTGGTTAGAGTAAATATT
455 TAAATATTTTTTGGTTAGAGTAAATATT
*
32406017 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAAGATTCC
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
32406082 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
66 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
32406147 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* * *
32406212 ACCACCAAATTCTACTTATCTTTGATAGAAGCTTCTCGATCACAATCCTAATTGTCTAAACCTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* **
32406277 TTGTAATCGCCCTAAAAAAATCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* * *
32406342 AAGAGTTAATCGGTTTTACTAGTCATTG-TTTTTTTT--AAAAAATTAGTTAGCTTAATTTCTTT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATT
** *
32406404 TAAAAATCGGTAAATAATATTCTTGAACATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
391 TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
*
32406469 AAATATTTTTTGGTTGGAGTAAATATT
456 AAATATTTTTTGGTTAGAGTAAATATT
* * *
32406496 TTATTGAAAAGTAAATTAAAATGGAGAGAAGTTATAATATTAACTAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
*
32406561 G-------------------G--AAATATCACTTACGAATATCATGAATACTAATA-CCCCAT-C
66 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* * *
32406603 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCACCTAATATTTTCTTCTTTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* *
32406668 ACCACCAAATTCTGCTTATCTTTGATAGAAGTTCCTCGATCACAATCCTAATTGTCCAAACTTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* * *
32406733 TTGTAATCGCCCTAAACATAGGTCTACCAGTTTTGAGTAAATTTATCGGGTTCCGGGTGAATACT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* * * ** **
32406798 AGGACTTAATCGAGTTTACTAGTTATTGTTTTTTTACAAAAAAAATTTTTTAGCTTAATTTCATT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATT
* * * ** *
32406863 TAAAAATCGGTAAATAATGTTCCGGAGAA-GAATTTTTTTTTTGAGAAATCAATTTTATGGTTTT
391 TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
*
32406927 AATTATTTTTTGGTTAGAGTAAATA-T
456 AAATATTTTTTGGTTAGAGTAAATATT
* *
32406953 TTATTGAAAAATAAACTAAAA-TGAAGAAAAGTTACAATATTAACTAAACGGGTAAATAATATT-
1 TTATTGAAAAATAAATTAAAATTG-AGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC
* * *
32407016 CTAGAAAATAAAAATATTTTTAGAAAAATATTACTCACGAATATCATGAATACTAATACCTCCAT
65 CGA-AAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCAT
** *
32407081 CCTTTTAGGCTGGCACACAAAGCCTTCCACAGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCC
129 CCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCC
* * * **
32407146 AGATCACCAGATTCTGCTTGTAATTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCT
194 AGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCT
* * * * * *
32407211 ACTTGTAATTGCCCTAAAAATAGGTCTTCTAGTTATGAGTAAGTTTATCTGGTTACGGGTGAATG
259 ACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATG
* *
32407276 CTAGGAGTTAATCGGGTTTACTAGTTATTG--ATTTTTTAAAAATAAATTAGTTAGCTTAATTTC
324 CTAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAA-AAATTAGTTAGCTTAATTTC
* * * ** * *
32407339 TTTTAAAAATAGGTAAATACTATTCCAAAAAATAAAAATATTTATTGAGAAATAAATTTTATGGT
388 ATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGT
32407404 TTTAAATATTTTTTGGTTAGAGTAAATATT
453 TTTAAATATTTTTTGGTTAGAGTAAATATT
32407434 TTATTGAAAAATAAATTAAAA-TGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC
1 TTATTGAAAAATAAATTAAAATTG-AGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC
* * * **
32407498 CGGAAAATAAAAATATTTTTAGAAAAATATCACTTACAAATATCATGAATACTAATATGCCCATC
65 CGAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
* * *
32407563 TTTTTAAGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCTA
130 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
* * **
32407628 AACCACCAAATTCTGCTTTTCTTTGATAGAAGCTCCTTAATCACAATCCTAATTGTCCAAACCTA
195 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
* *
32407693 CTTGTAATTGCCCTAAAAATAGGTCTCCCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
260 CTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
* * *
32407758 TAGGAGTTAATCGGGTTTACTAGTTATTG--------T--------TTAGTTAGCTTAGTTTCTT
325 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCAT
* * * *
32407807 TTAAAAATCGGTAAATAATATTCTGAAAAATAAAAATATTTTTTTATAAATCAATTTTATGGTTT
390 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
32407872 TAAATATTTTTTGGTTAGAGTAAATATT
455 TAAATATTTTTTGGTTAGAGTAAATATT
* *
32407900 TTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAAC-AGAAGGGGTAAATAATATTC
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTA-AACGGGTAAATAATATTC
*
32407964 CGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
65 CGAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
* *
32408029 CTTTTAGGCTGGCACGCAAATTCTTCCACGGGAGTATTGCCCAATATTTTCCTCTTTCCTTTCCA
130 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
* * *
32408094 GACCACAAAATTCAGCTTATCTTTGATAGAAGCTCCACGATCACAATCCTAATTGTCCAAACCTA
195 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
* * *
32408159 CTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTCAACGGGTTCCGGGTGAGTGC
260 CTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
* * ***
32408224 TAGGAGTTAATCGGGTTAACTAGACATTGTTTTTTCAAAAAAAAAATTAGTTAGCTTAATTTCAT
325 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCAT
*
32408289 TTAAAAATCGGTAAATAATATTTCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
390 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
*
32408354 TAAATATTTTTTTGTTAGAGTAAATATT
455 TAAATATTTTTTGGTTAGAGTAAATATT
* * *
32408382 TTATTGAAAAGTAAATTAAAA-TGAACAGAAGTTACAATATTAACAAAACGGGTAAATAATATTC
1 TTATTGAAAAATAAATTAAAATTG-AGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC
32408446 CGAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
65 CGAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
* * * *
32408511 CTTTTAGGCTGGCACACATATTCTTCCACGGGAGTGTCACCCAATATTTTTCTC-TTCCTTTCCA
130 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
* * *
32408575 GACCACCAAATTTTACTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACTTA
195 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
* *
32408640 CTTTTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCAGGTTCCGGGTGAATGC
260 CTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
*
32408705 TAGGAGTTAATCGGGTTAACTAGTCATTG-TTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCAT
325 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCAT
*
32408769 TTAAAAATCGGTAAATAATATTTCGGAAAATAAAAATATTATTTT-AGAAATCAATTTTATGGTT
390 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATT-TTTTGAGAAATCAATTTTATGGTT
32408833 TTAAATATTTTTTGGTTAGAGTAAATATT
454 TTAAATATTTTTTGGTTAGAGTAAATATT
* * *
32408862 TTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTGAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
*
32408927 GGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
66 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
*
32408992 TTTTAGGCTGGCACGCAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* * * * *
32409057 ACCACAAAATTCTACTTATCTTTGATAGAAGCTCCTCGATCACAATCTTAATTGCCCAAACCTAA
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
** *
32409122 TTGTAATCGCCCTGGAAATATGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* * *
32409187 AAGAGTTAATCGGTTTTACTAGTCATTG-TTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCTTT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATT
** *
32409251 TAAAAATCGGTAAATAATATTCTTGAACATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
391 TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
32409316 -AAT-TTTTTTGGTTAGAGTAAATATT
456 AAATATTTTTTGGTTAGAGTAAATATT
32409341 TTATTGAAAAATAAATTAAAA-TGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC
1 TTATTGAAAAATAAATTAAAATTG-AGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC
* * * **
32409405 CGGAAAATAAAAATATTTTTAGAAAAATATCACTTACAAATATCATGAATACTAATATGCCCATC
65 CGAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
* * *
32409470 TTTTTAAGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCTA
130 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
*
32409535 GACCACCAAATTCTGCTTTTCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
195 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
* * * * *
32409600 CTTGTACTCGCCCTAGAAATAGGTTTACCAGTTTTGAGTAAGTTTATCGGGTTGCGAGTGAATGC
260 CTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
*
32409665 TAGGAGTTAATCGGGTTTACTAGTTATTG-TTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCAT
325 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCAT
* *
32409729 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTATTGGGAAATCAATTTTATGGTTT
390 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
*
32409794 TAATTATTTTTTGGTTAGAGTAAATATT
455 TAAATATTTTTTGGTTAGAGTAAATATT
* * * *
32409822 TTGTTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTAAATAAAATTCC
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
* *
32409887 GGAAAATAAAAATAGTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
66 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* *
32409952 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTACTTTTTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* * *
32410017 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCATCGATCACAATCCTGATTGTCCAAACCTAG
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* *
32410082 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGATGAATGTT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* *
32410147 AGGAGTTAATCGGGTTTACTAGTTATTGTTTTTTTTT-AAAAAAA-T--TTATCTTAATTTCATT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATT
* * *
32410208 TAAAAATCAGTAAATAATATTCTGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTT
391 TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
*
32410273 AAATATTTTTTGGTTGGAGTAAATATT
456 AAATATTTTTTGGTTAGAGTAAATATT
* * *
32410300 TTATTGAAAAGTAAATTAAAATGGAGAGAAGTTATAATATTAACTAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
* * *
32410365 G-------------------G--AAATATCACTTACGAATATCATGAATACTAATACCCCTATCT
66 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* *
32410409 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCACCCAATATTTTCTTCTTTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
*
32410474 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACTTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* *
32410539 TTGTAATCGCCCTAAACATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATACT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* * * **
32410604 AGGACTTAATCGAGTTTACTAGTTATTGTTTTTTTACAAAAAAAATT-GTTAGCTTAATTTCATT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATT
*
32410668 TAAAAATCGGTAAATAATATTCCGG-AAA-AGAAAT-TTTTTTGAGAAATCAATTTTATGGTTTT
391 TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
*
32410730 AATTATTTTTTGGTTAGAGTAAATA-T
456 AAATATTTTTTGGTTAGAGTAAATATT
* * *
32410756 TTATTGAAAAATAAACT-AAAGTGAAGAAAAGTTACAATATTAACTAAACGGGTAAATAATATT-
1 TTATTGAAAAATAAATTAAAATTG-AGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC
* *
32410819 CTAGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCTCCAT
65 CGA-AAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCAT
** *
32410884 CCTTTTAGGCTGGCACACAAAGCCTTCCACAGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCC
129 CCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCC
* * *
32410949 AGACCACCAGATTCTGCTTGTCATTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCT
194 AGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCT
* * * * * **
32411014 ACTTGTAATTGCCCTAAAAATAGGTCTTCTAGTTATGAGTAAGTTTATCTGGTTATGGGTGAATG
259 ACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATG
* *
32411079 CTAGGAGTTAATCGGGTTTACTAGTTATTG--ATTTTTTAAAAATAAATTAGTTAGCTTAATTTC
324 CTAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAA-AAATTAGTTAGCTTAATTTC
* * * * *
32411142 TTTTAAAAATAGGTAAATACTATTCCGAAAAATAAAAATATTTTTTGAGAAATAAATTTTATGGT
388 ATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGT
32411207 TTTAAATATTTTTTGGTTAGAGTAAATATT
453 TTTAAATATTTTTTGGTTAGAGTAAATATT
*
32411237 TTATTTAAAAATAAATTAAAA-TGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC
1 TTATTGAAAAATAAATTAAAATTG-AGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC
* * * **
32411301 CGGAAAATAAAAATATTTTTAGAAAAATATCACTTACGAATATAATGAATACTAATATGCCCATC
65 CGAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
* * * **
32411366 TTTTTAAGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTTTTTCCTTTATA
130 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
* *
32411431 GACCACCAAATTCTGCTTTTCTTTGATAGAAGCTCCTCAATCACAATCCTAATTGTCCAAACCTA
195 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
* * *
32411496 CTTGTAATTGCCCTAAAAATAGGTCTCCCAATTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
260 CTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
* * *
32411561 TAGGAGTTAATCGGGTTTACTAGTTATTG--------T--------TTAGTTAGCTTAGTTTCTT
325 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCAT
* * *
32411610 TTAAAAATCGGTAAATAATATTCCGAAAAATAAAAATATTTTTTTATAAATCAATTTTATGGTTT
390 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
32411675 TAAATA--TTTTGGTTAGAGTAAATATT
455 TAAATATTTTTTGGTTAGAGTAAATATT
* *
32411701 TTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACAGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
* *
32411766 GGAAAATAAAAATATTTTTAGGAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
66 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* * *
32411831 TTTTAGGCTAGCACACAAATTTTTCCACTGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* * *
32411896 ACCACAAAATTCAGCTTATCTTTGATAGAAGCTCCACGATCACAATCCTAATTGTCCAAACCTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* * *
32411961 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTCAACGGGTTCCGGGTGAGTGCT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* * ***
32412026 AGGAGTTAATCGGGTTAACTAGACATTGTTTTTTCAAAAAAAAAATTAGTTAGCTTAATTTCATT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATT
32412091 TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
391 TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
32412156 AAATATTTTTTGGTTAGAGTAAATATT
456 AAATATTTTTTGGTTAGAGTAAATATT
* *
32412183 TTATTGAAAAATAAATTAAAATGGAGAAAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
32412248 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
66 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* * * *
32412313 TTTTAGGCTGGCACACATATTCTTCCACGGGAGTGTCACCCAATATTTTTCTC-TTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* * *
32412377 ACCACCAAATTTTACTTATCTTTGATAGAAGCTCCTCGATCACAATCTTAATTGTCCAAACCTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* *
32412442 TTTTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCAGGTTCCGGGTGAATGCT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
*
32412507 AGGAGTTAATCGGGTTAACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATT
*
32412572 TAAAAATCGGTAAATAATATTTCGGAAAATAAAAATATTATTTT-AGAAATCAATTTTATGGTTT
391 TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATT-TTTTGAGAAATCAATTTTATGGTTT
32412636 TAAATATTTTTTGGTTAGAGTAAATATT
455 TAAATATTTTTTGGTTAGAGTAAATATT
* * *
32412664 TTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTGAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
** *
32412729 GAAAAATAAAAATATTTTTAGAAAAATGCCACTCACGAATATCATGAATACTAATACCCCCCTCC
66 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
*
32412794 TTTTAGGCTGGCAAACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
*
32412859 ACCACCAAATTCTACTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
32412924 TTGTAATCGCCCTAA
261 TTGTAATCGCCCTAA
32412939 GCATAGGTGT
Statistics
Matches: 8144, Mismatches: 580, Indels: 253
0.91 0.06 0.03
Matches are distributed among these distances:
455 5 0.00
456 260 0.03
457 374 0.05
458 98 0.01
459 52 0.01
460 39 0.00
464 341 0.04
465 2 0.00
466 510 0.06
467 1 0.00
475 12 0.00
476 6 0.00
477 279 0.03
478 209 0.03
479 670 0.08
480 689 0.08
481 2372 0.29
482 1623 0.20
483 602 0.07
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35
Consensus pattern (482 bp):
TTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATT
TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
AAATATTTTTTGGTTAGAGTAAATATT
Found at i:32405413 original size:964 final size:962
Alignment explanation
Indices: 32403607--32412938 Score: 14742
Period size: 964 Copynumber: 9.8 Consensus size: 962
32403597 TAAACACTTC
*
32403607 TTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTAAATAATA-TCG
1 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTC-
*
32403671 CGAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
65 CGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
* *
32403736 CTTTTAGGGTGGCACACAAATTCTTCCACGGGAGTATCGCCTAATATTTTCCTCTTTCCTTTCCA
130 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
32403801 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
195 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
* *
32403866 CTTGTAATCGCCCTAAAAAAAGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
260 CTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
*
32403931 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTTAAAAAAAATAGTTAGCTTAATTTCATT
325 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTAAAAAAAAATAGTTAGCTTAATTTCATT
* * * *
32403996 TAAAAATCAGTAAATAACATTCCAGAAAATAAAAATATTTTTTGAGAAATCAATTTTACGGTTTT
390 TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
*
32404061 AAATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAAT
455 AAATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAAT
* *
32404126 ATTAACTAAACGGGTAAATAAGATTCCGAAAAATAAAAATATTTTTAGAAAAATATCACTCACGA
520 ATTAACTAAACGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGA
32404191 ATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCG
585 ATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCG
* *
32404256 CCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTACTTATCTTTGATAGAAGCTTCTCG
650 CCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCG
* * * *
32404321 ATCACAATCCTAATTGTCTAAACCGACTTGTAATCGCCCTAAAAAAAGCTCTACCAGTTTTGAGT
715 ATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGT
* * *
32404386 AAGTTTATCGGGTTTCGGGTGAATGCTAAGAGTTAATCGAGTTTACTAGTCATTGTTTTTTTTTA
780 AAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTTTACTAGTCATTG--TTTTTTTA
** *
32404451 AAAAAAAATTAGCCAGCTTAATTTCATTTAAAATTCGGTAAATAATATTCCGGAAAATAAAAATA
843 AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATA
*
32404516 TTTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTCGAGTAAATATT
908 TTTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATT
32404571 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
* *
32404636 GGAAAATAAAAATATTTTTTGAAAAATATCACTCACGAATATAATGAATACTAATACCCCCATCC
66 GGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* *
32404701 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTACTCTTTCCTTTCCAA
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
*
32404766 ACCACCAAATTCTTCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* *
32404831 TTGTAATTGCCCTAAAAATAGGTCTCCCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
*
32404896 AGGAGTTAATCGGCTTTACTAGTCATTGTTTTTTTTTAAAAAAAAATAGTTAGCTTAATTTCATT
326 AGGAGTTAATCGGGTTTACTAGTCATTG-TTTTTTTTAAAAAAAAATAGTTAGCTTAATTTCATT
* * * *
32404961 TAAAAATCAGTAAATAACATTCCAGAAAATAAAAATATTTTTTGAGAAATCAATTTTACGGTTTT
390 TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
* *
32405026 AAATATTTTTTGGTTAAAGTAAATATTTTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAAT
455 AAATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAAT
* **
32405091 ATTAACTAAACGGGTAAATAAGATTCCAAAAAATAAAAATATTTTTAGAAAAATATCACTCACGA
520 ATTAACTAAACGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGA
32405156 ATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCG
585 ATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCG
* *
32405221 CCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTTCTTATCTTTTATAGAAGCTCCTCG
650 CCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCG
* * * *
32405286 ATCACAATCCTAATAGTCAAAACCTATTTGTAATCACCCTAAAAATAGGTCTACCAGTTTTGAGT
715 ATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGT
*
32405351 AAGTTTATCGGGGTTCCGAGTGAATGCTAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTAA
780 AAGTTTATC-GGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTT-A
*
32405416 AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGAAAAATAAAAATA
843 AAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATA
* * *
32405481 TTTATTGAGAAATTAATTTTATGATTTTAAA-AGTTTTTTGGTTAGAGT-AATATT
908 TTTTTTGAGAAATCAATTTTATGGTTTTAAATA-TTTTTTGGTTAGAGTAAATATT
* *
32405535 TTATTGAAAAGTAAATTAAAATAAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
32405600 GGAAAATAAAAATATTGTTT-GAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
66 GGAAAATAAAAATATT-TTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATC
32405664 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
130 CTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA
32405729 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
195 GACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTA
* *
32405794 CTTGTAATCGCCCTAAAAAAAGCTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
260 CTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGC
32405859 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTAAAAAAAAATTAGTTAGCTTAATTTCAT
325 TAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTAAAAAAAAA-TAGTTAGCTTAATTTCAT
*
32405924 TTAAAAATCGGTAAATAATATTCCAGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
389 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
*
32405989 TAAATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATTGAGAGAAGTTACAA
454 TAAATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAA
* *
32406054 TATTAACTAAACGGGTAAATAAGATTCCGAAAAATAAAAATATTTTTAGAAAAATATCACTCACG
519 TATTAACTAAACGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACG
32406119 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATC
584 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATC
* *
32406184 GCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTACTTATCTTTGATAGAAGCTTCTC
649 GCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTC
* * **
32406249 GATCACAATCCTAATTGTCTAAACCTACTTGTAATCGCCCTAAAAAAATCTCTACCAGTTTTGAG
714 GATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAG
* *
32406314 TAAGTTTATCGGGTTCCGGGTGAATGCTAAGAGTTAATCGGTTTTACTAGTCATTGTTTTTTT--
779 TAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTAA
* * ** *
32406377 TAAAAAATTAGTTAGCTTAATTTCTTTTAAAAATCGGTAAATAATATTCTTGAACATAAAAATAT
844 AAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATAT
*
32406442 TTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTGGAGTAAATATT
909 TTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATT
* * *
32406496 TTATTGAAAAGTAAATTAAAATGGAGAGAAGTTATAATATTAACTAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
*
32406561 -G------------------G--AAATATCACTTACGAATATCATGAATACTAATA-CCCCAT-C
66 GGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* * *
32406603 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCACCTAATATTTTCTTCTTTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* *
32406668 ACCACCAAATTCTGCTTATCTTTGATAGAAGTTCCTCGATCACAATCCTAATTGTCCAAACTTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* * *
32406733 TTGTAATCGCCCTAAACATAGGTCTACCAGTTTTGAGTAAATTTATCGGGTTCCGGGTGAATACT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* * * **
32406798 AGGACTTAATCGAGTTTACTAGTTATTG-TTTTTTTACAAAAAAAATTTTTTAGCTTAATTTCAT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTA-AAAAAAAA-TAGTTAGCTTAATTTCAT
* * * ** *
32406862 TTAAAAATCGGTAAATAATGTTCCGGAGAA-GAATTTTTTTTTTGAGAAATCAATTTTATGGTTT
389 TTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTT
* * * *
32406926 TAATTATTTTTTGGTTAGAGTAAATA-TTTATTGAAAAATAAACTAAAATGAAGAAAAGTTACAA
454 TAAATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAA
** *
32406990 TATTAACTAAACGGGTAAATAATATTCTAGAAAATAAAAATATTTTTAGAAAAATATTACTCACG
519 TATTAACTAAACGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACG
* ** *
32407055 AATATCATGAATACTAATACCTCCATCCTTTTAGGCTGGCACACAAAGCCTTCCACAGGAGTATC
584 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATC
* * * **
32407120 GCCCAATATTTTCCTCTTTCCTTTCCAGATCACCAGATTCTGCTTGTAATTGATAGAAGCTCCTC
649 GCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTC
* * * *
32407185 GATCACAATCCTAATTGTCCAAACCTACTTGTAATTGCCCTAAAAATAGGTCTTCTAGTTATGAG
714 GATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAG
* * * *
32407250 TAAGTTTATCTGGTTACGGGTGAATGCTAGGAGTTAATCGGGTTTACTAGTTATTGATTTTTTAA
779 TAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTAA
* * * * **
32407315 AAATAAATTAGTTAGCTTAATTTCTTTTAAAAATAGGTAAATACTATTCCAAAAAATAAAAATAT
844 AAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATAT
* *
32407380 TTATTGAGAAATAAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATT
909 TTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATT
32407434 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
* * ** *
32407499 GGAAAATAAAAATATTTTTAGAAAAATATCACTTACAAATATCATGAATACTAATATGCCCATCT
66 GGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* * *
32407564 TTTTAAGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCTAA
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* **
32407629 ACCACCAAATTCTGCTTTTCTTTGATAGAAGCTCCTTAATCACAATCCTAATTGTCCAAACCTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* *
32407694 TTGTAATTGCCCTAAAAATAGGTCTCCCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* * *
32407759 AGGAGTTAATCGGGTTTACTAGTTATTG------TT---------TAGTTAGCTTAGTTTCTTTT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTAAAAAAAAATAGTTAGCTTAATTTCATTT
* * * *
32407809 AAAAATCGGTAAATAATATTCTGAAAAATAAAAATATTTTTTTATAAATCAATTTTATGGTTTTA
391 AAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTA
32407874 AATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAATA
456 AATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAATA
*
32407939 TTAAC-AGAAGGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGA
521 TTAACTA-AACGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGA
* *
32408003 ATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACGCAAATTCTTCCACGGGAGTATTG
585 ATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCG
* * *
32408068 CCCAATATTTTCCTCTTTCCTTTCCAGACCACAAAATTCAGCTTATCTTTGATAGAAGCTCCACG
650 CCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCG
32408133 ATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGT
715 ATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGT
* * * * * *
32408198 AAGTTCAACGGGTTCCGGGTGAGTGCTAGGAGTTAATCGGGTTAACTAGACATTGTTTTTTCAAA
780 AAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTT-TAA
*
32408263 AAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTTCGGAAAATAAAAATAT
844 AAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATAT
*
32408328 TTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTTGTTAGAGTAAATATT
909 TTTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATT
* * *
32408382 TTATTGAAAAGTAAATTAAAATGAACAGAAGTTACAATATTAACAAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
*
32408447 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
66 GGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* * * *
32408512 TTTTAGGCTGGCACACATATTCTTCCACGGGAGTGTCACCCAATATTTTTCTC-TTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* * *
32408576 ACCACCAAATTTTACTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACTTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* *
32408641 TTTTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCAGGTTCCGGGTGAATGCT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* *
32408706 AGGAGTTAATCGGGTTAACTAGTCATTGTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTAAAAAAAAATAGTTAGCTTAATTTCATTT
*
32408771 AAAAATCGGTAAATAATATTTCGGAAAATAAAAATATTATTTT-AGAAATCAATTTTATGGTTTT
391 AAAAATCGGTAAATAATATTCCGGAAAATAAAAATATT-TTTTGAGAAATCAATTTTATGGTTTT
*
32408835 AAATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAAT
455 AAATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAAT
*
32408900 ATTAACTGAACGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGA
520 ATTAACTAAACGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGA
*
32408965 ATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACGCAAATTCTTCCACGGGAGTATCG
585 ATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCG
* *
32409030 CCCAATATTTTCCTCTTTCCTTTCCAGACCACAAAATTCTACTTATCTTTGATAGAAGCTCCTCG
650 CCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCG
* * * ** *
32409095 ATCACAATCTTAATTGCCCAAACCTAATTGTAATCGCCCTGGAAATATGTCTACCAGTTTTGAGT
715 ATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGT
* * *
32409160 AAGTTTATCGGGTTCCGGGTGAATGCTAAGAGTTAATCGGTTTTACTAGTCATTGTTTTTTTTAA
780 AAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTAAA
* ** *
32409225 AAAAAATTAGTTAGCTTAATTTCTTTTAAAAATCGGTAAATAATATTCTTGAACATAAAAATATT
845 AAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATT
32409290 TTTTGAGAAATCAATTTTATGGTTTT-AAT-TTTTTTGGTTAGAGTAAATATT
910 TTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATT
32409341 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
* * ** *
32409406 GGAAAATAAAAATATTTTTAGAAAAATATCACTTACAAATATCATGAATACTAATATGCCCATCT
66 GGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* *
32409471 TTTTAAGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCTAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
*
32409536 ACCACCAAATTCTGCTTTTCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* * * * *
32409601 TTGTACTCGCCCTAGAAATAGGTTTACCAGTTTTGAGTAAGTTTATCGGGTTGCGAGTGAATGCT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* *
32409666 AGGAGTTAATCGGGTTTACTAGTTATTGTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTAAAAAAAAATAGTTAGCTTAATTTCATTT
* *
32409731 AAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTATTGGGAAATCAATTTTATGGTTTTA
391 AAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTA
* * *
32409796 ATTATTTTTTGGTTAGAGTAAATATTTTGTTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATA
456 AATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAATA
* *
32409861 TTAACTAAACGGGTAAATAAAATTCCGGAAAATAAAAATAGTTTTAGAAAAATATCACTCACGAA
521 TTAACTAAACGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAA
32409926 TATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGC
586 TATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGC
* * *
32409991 CCAATATTTTACTTTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCATCGA
651 CCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
* *
32410056 TCACAATCCTGATTGTCCAAACCTAGTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTA
716 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTA
* * * **
32410121 AGTTTATCGGGTTCCGGATGAATGTTAGGAGTTAATCGGGTTTACTAGTTATTGTTTTTTTTTAA
781 AGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTAAAA
* * *
32410186 AAAAA-T--TTATCTTAATTTCATTTAAAAATCAGTAAATAATATTCTGGAAAATAAAAATATTT
846 AAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTT
* *
32410248 ATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTGGAGTAAATATT
911 TTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATT
* * *
32410300 TTATTGAAAAGTAAATTAAAATGGAGAGAAGTTATAATATTAACTAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
* * *
32410365 -G------------------G--AAATATCACTTACGAATATCATGAATACTAATACCCCTATCT
66 GGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* *
32410409 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCACCCAATATTTTCTTCTTTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
*
32410474 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACTTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* *
32410539 TTGTAATCGCCCTAAACATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATACT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* * * *
32410604 AGGACTTAATCGAGTTTACTAGTTATTG-TTTTTTTACAAAAAAAATTGTTAGCTTAATTTCATT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTA-AAAAAAAATAGTTAGCTTAATTTCATT
*
32410668 TAAAAATCGGTAAATAATATTCCGG-AAA-AGAAAT-TTTTTTGAGAAATCAATTTTATGGTTTT
390 TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTT
* * * * *
32410730 AATTATTTTTTGGTTAGAGTAAATA-TTTATTGAAAAATAAACTAAAGTGAAGAAAAGTTACAAT
455 AAATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAAT
**
32410794 ATTAACTAAACGGGTAAATAATATTCTAGAAAATAAAAATATTTTTAGAAAAATATCACTCACGA
520 ATTAACTAAACGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGA
* ** *
32410859 ATATCATGAATACTAATACCTCCATCCTTTTAGGCTGGCACACAAAGCCTTCCACAGGAGTATCG
585 ATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCG
* * *
32410924 CCCAATATTTTCCTCTTTCCTTTCCAGACCACCAGATTCTGCTTGTCATTGATAGAAGCTCCTCG
650 CCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCG
* * * *
32410989 ATCACAATCCTAATTGTCCAAACCTACTTGTAATTGCCCTAAAAATAGGTCTTCTAGTTATGAGT
715 ATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGT
* ** * *
32411054 AAGTTTATCTGGTTATGGGTGAATGCTAGGAGTTAATCGGGTTTACTAGTTATTGATTTTTTAAA
780 AAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTAAA
* * * * *
32411119 AATAAATTAGTTAGCTTAATTTCTTTTAAAAATAGGTAAATACTATTCCGAAAAATAAAAATATT
845 AAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATT
*
32411184 TTTTGAGAAATAAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATT
910 TTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATT
*
32411237 TTATTTAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
* * ** *
32411302 GGAAAATAAAAATATTTTTAGAAAAATATCACTTACGAATATAATGAATACTAATATGCCCATCT
66 GGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* * **
32411367 TTTTAAGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTTTTTCCTTTATAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* *
32411432 ACCACCAAATTCTGCTTTTCTTTGATAGAAGCTCCTCAATCACAATCCTAATTGTCCAAACCTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* * *
32411497 TTGTAATTGCCCTAAAAATAGGTCTCCCAATTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* * *
32411562 AGGAGTTAATCGGGTTTACTAGTTATTG------TT---------TAGTTAGCTTAGTTTCTTTT
326 AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTAAAAAAAAATAGTTAGCTTAATTTCATTT
* * *
32411612 AAAAATCGGTAAATAATATTCCGAAAAATAAAAATATTTTTTTATAAATCAATTTTATGGTTTTA
391 AAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTA
32411677 AATA--TTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAATA
456 AATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAATA
* *
32411740 TTAACTAAACAGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGGAAAATATCACTCACGAA
521 TTAACTAAACGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAA
* * *
32411805 TATCATGAATACTAATACCCCCATCCTTTTAGGCTAGCACACAAATTTTTCCACTGGAGTATCGC
586 TATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGC
* * *
32411870 CCAATATTTTCCTCTTTCCTTTCCAGACCACAAAATTCAGCTTATCTTTGATAGAAGCTCCACGA
651 CCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
32411935 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTA
716 TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTA
* * * * * *
32412000 AGTTCAACGGGTTCCGGGTGAGTGCTAGGAGTTAATCGGGTTAACTAGACATTGTTTTTTCAAAA
781 AGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTT-TAAA
32412065 AAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATT
845 AAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATT
32412130 TTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATT
910 TTTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATT
* *
32412183 TTATTGAAAAATAAATTAAAATGGAGAAAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
1 TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
*
32412248 GAAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
66 GGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
* * * *
32412313 TTTTAGGCTGGCACACATATTCTTCCACGGGAGTGTCACCCAATATTTTTCTC-TTCCTTTCCAG
131 TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
* * *
32412377 ACCACCAAATTTTACTTATCTTTGATAGAAGCTCCTCGATCACAATCTTAATTGTCCAAACCTAC
196 ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
* *
32412442 TTTTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCAGGTTCCGGGTGAATGCT
261 TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
* *
32412507 AGGAGTTAATCGGGTTAACTAGTCATTGTTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATT
326 AGGAGTTAATCGGGTTTACTAGTCATTG-TTTTTTTTAAAAAAAAATAGTTAGCTTAATTTCATT
*
32412572 TAAAAATCGGTAAATAATATTTCGGAAAATAAAAATATTATTTT-AGAAATCAATTTTATGGTTT
390 TAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATT-TTTTGAGAAATCAATTTTATGGTTT
*
32412636 TAAATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAA
454 TAAATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAA
* * **
32412701 TATTAACTGAACGGGTAAATAATATTCCGAAAAATAAAAATATTTTTAGAAAAATGCCACTCACG
519 TATTAACTAAACGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACG
* *
32412766 AATATCATGAATACTAATACCCCCCTCCTTTTAGGCTGGCAAACAAATTCTTCCACGGGAGTATC
584 AATATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATC
*
32412831 GCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTACTTATCTTTGATAGAAGCTCCTC
649 GCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTC
32412896 GATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAA
714 GATCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAA
32412939 GCATAGGTGT
Statistics
Matches: 7706, Mismatches: 553, Indels: 219
0.91 0.07 0.03
Matches are distributed among these distances:
934 335 0.04
935 52 0.01
936 332 0.04
937 233 0.03
938 730 0.09
939 7 0.00
940 33 0.00
942 1 0.00
943 40 0.01
944 21 0.00
945 526 0.07
946 367 0.05
947 479 0.06
948 280 0.04
952 2 0.00
953 4 0.00
956 3 0.00
957 76 0.01
958 249 0.03
959 309 0.04
960 730 0.09
961 441 0.06
962 442 0.06
963 350 0.05
964 1091 0.14
965 531 0.07
966 42 0.01
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35
Consensus pattern (962 bp):
TTATTGAAAAATAAATTAAAATGAAGAGAAGTTACAATATTAACTAAACGGGTAAATAATATTCC
GGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAATACCCCCATCC
TTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAG
ACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGTCCAAACCTAC
TTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCT
AGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTTAAAAAAAAATAGTTAGCTTAATTTCATTT
AAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATGGTTTTA
AATATTTTTTGGTTAGAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAATA
TTAACTAAACGGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAA
TATCATGAATACTAATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGC
CCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGA
TCACAATCCTAATTGTCCAAACCTACTTGTAATCGCCCTAAAAATAGGTCTACCAGTTTTGAGTA
AGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTTTACTAGTCATTGTTTTTTTAAAA
AAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTT
TTTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAGAGTAAATATT
Found at i:32414821 original size:23 final size:23
Alignment explanation
Indices: 32414790--32415479 Score: 625
Period size: 23 Copynumber: 30.1 Consensus size: 23
32414780 AAATAAGTAC
* *
32414790 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
* *
32414813 TTAAGCACTTCAATTTACAACAT
1 TTAAACACTTCAATTTACAGCAT
*
32414836 TTAAACACTTCAATTTGCAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
32414859 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* *
32414883 TT-AACA-TCTCAATTAACAACAT
1 TTAAACACT-TCAATTTACAGCAT
* *
32414905 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTACAGC-AT
* * * *
32414927 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* * * *
32414950 CTAAACACTTCAATTTGCAGTAC
1 TTAAACACTTCAATTTACAGCAT
* *
32414973 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
*
32414996 TTAAGCACTTCAA-TTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
*
32415018 TTAAACACTTCAATTTACAACAT
1 TTAAACACTTCAATTTACAGCAT
* *
32415041 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
32415065 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
*
32415087 TTAAACACTTCAATTTACAACAT
1 TTAAACACTTCAATTTACAGCAT
* *
32415110 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
*
32415134 TT-AATACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
32415156 TAAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* * *
32415180 TT-AACATTTCAATTAACAACAT
1 TTAAACACTTCAATTTACAGCAT
32415202 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
32415225 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
32415249 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTACAGCAT
* *
32415271 TAAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* * *
32415295 TT-AACATTTCAATTAACAACAT
1 TTAAACACTTCAATTTACAGCAT
*
32415317 TTAAACACTTCAATTTAGAGCAT
1 TTAAACACTTCAATTTACAGCAT
* * *
32415340 TAAAACATTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTACAGCA-T
* * *
32415364 TT-AACATTTCAATTAACAACAT
1 TTAAACACTTCAATTTACAGCAT
* * *
32415386 TTATACACCTCAA-TTACAGCAA
1 TTAAACACTTCAATTTACAGCAT
* * *
32415408 TAAAACA-TCTCAATTTCCAGCAA
1 TTAAACACT-TCAATTTACAGCAT
* ** * *
32415431 CTAAACACTTCAATTTGTAGTAC
1 TTAAACACTTCAATTTACAGCAT
* * *
32415454 TTAAACAGTTCAATTTGCAACAT
1 TTAAACACTTCAATTTACAGCAT
32415477 TTA
1 TTA
32415480 CTACTAATAT
Statistics
Matches: 540, Mismatches: 102, Indels: 50
0.78 0.15 0.07
Matches are distributed among these distances:
22 69 0.13
23 455 0.84
24 16 0.03
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.33
Consensus pattern (23 bp):
TTAAACACTTCAATTTACAGCAT
Found at i:32417542 original size:15 final size:15
Alignment explanation
Indices: 32417509--32417555 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
32417499 TATTTCATGA
* *
32417509 AATTAT-TTATTACT
1 AATTATATTAATAAT
32417523 AATTATATTAATAAT
1 AATTATATTAATAAT
* *
32417538 AATTAGAATAATAAT
1 AATTATATTAATAAT
32417553 AAT
1 AAT
32417556 AACTCCCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 6 0.21
15 22 0.79
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (15 bp):
AATTATATTAATAAT
Found at i:32418269 original size:14 final size:14
Alignment explanation
Indices: 32418250--32418288 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
32418240 AAGGATGGAG
32418250 ATTTAGAGAAGGAA
1 ATTTAGAGAAGGAA
* *
32418264 ATTTAGAGATGGAG
1 ATTTAGAGAAGGAA
*
32418278 TTTTAGAGAAG
1 ATTTAGAGAAG
32418289 CAGGAAATGC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.31, T:0.28
Consensus pattern (14 bp):
ATTTAGAGAAGGAA
Found at i:32419661 original size:14 final size:14
Alignment explanation
Indices: 32419639--32419683 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
32419629 TCATACATTT
32419639 TAAACCCTAAATTA
1 TAAACCCTAAATTA
* **
32419653 TATACCCTAAACCA
1 TAAACCCTAAATTA
32419667 TAAACCCTAAATTA
1 TAAACCCTAAATTA
32419681 TAA
1 TAA
32419684 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCCTAAATTA
Found at i:32419897 original size:15 final size:15
Alignment explanation
Indices: 32419875--32419909 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
32419865 AAACCACCCT
*
32419875 TAAA-CCATAATCCC
1 TAAACCCATAATCCA
32419889 TAAACCCATAATCCA
1 TAAACCCATAATCCA
32419904 TAAACC
1 TAAACC
32419910 TTAAAACAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:32419914 original size:22 final size:21
Alignment explanation
Indices: 32419877--32419948 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 21
32419867 ACCACCCTTA
* *
32419877 AACCATAATCCCTAAACCCAT
1 AACCATAAACCTTAAACCCAT
*
32419898 AATCCATAAACCTTAAA-ACAGT
1 AA-CCATAAACCTTAAACCCA-T
* *
32419920 AACTCATAAACATTAAACCCTT
1 AAC-CATAAACCTTAAACCCAT
32419942 AACCATA
1 AACCATA
32419949 CACTGTAAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
21 9 0.22
22 31 0.76
23 1 0.02
ACGTcount: A:0.47, C:0.29, G:0.01, T:0.22
Consensus pattern (21 bp):
AACCATAAACCTTAAACCCAT
Found at i:32420129 original size:40 final size:40
Alignment explanation
Indices: 32420068--32420214 Score: 149
Period size: 40 Copynumber: 3.7 Consensus size: 40
32420058 TCATTTTTGT
* * *
32420068 GGCGTTTTTTGAAAAA-TGCCGCTAAAGATCGAACATTAGT
1 GGCG-TTTTTAAAAAAGCGCCGCTAAAGATCGAACATTAGC
* *
32420108 GGCGTTTTCT-AAAAAGCGCCGCTAAAGGT-GTACATATAGC
1 GGCGTTTT-TAAAAAAGCGCCGCTAAAGATCGAACAT-TAGC
* * *
32420148 GGCGTTTTTAAAAAAGCGCCGCTAATA-CTCGATCTTTAGC
1 GGCGTTTTTAAAAAAGCGCCGCTAA-AGATCGAACATTAGC
*
32420188 GGCGTTTTTAAAAACGCGCCGCTAAAG
1 GGCGTTTTTAAAAAAGCGCCGCTAAAG
32420215 CTACTAAAGG
Statistics
Matches: 91, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
39 16 0.18
40 71 0.78
41 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (40 bp):
GGCGTTTTTAAAAAAGCGCCGCTAAAGATCGAACATTAGC
Found at i:32420365 original size:40 final size:39
Alignment explanation
Indices: 32420321--32420398 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
32420311 TACATATAGC
* *
32420321 GGCGTTTTTTAAAAAAAATCGCTAATACTCGATCTTTAGT
1 GGCG-TTTTTAAAAAAAACCCCTAATACTCGATCTTTAGT
***
32420361 GGCGTTTTTAAAAAGCGCCCCTAATACTCGATCTTTAG
1 GGCGTTTTTAAAAAAAACCCCTAATACTCGATCTTTAG
32420399 CAGCATTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 29 0.88
40 4 0.12
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (39 bp):
GGCGTTTTTAAAAAAAACCCCTAATACTCGATCTTTAGT
Found at i:32421205 original size:132 final size:132
Alignment explanation
Indices: 32420900--32421275 Score: 415
Period size: 131 Copynumber: 2.8 Consensus size: 132
32420890 GACGAGATTT
* * *
32420900 GATATTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTT-TGCGTTTGCTCAAA
1 GATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCT-C-TTTGTTCAAA
* * * ** *
32420964 ATGATCGAATATCCCTTTAGAATTTCACCCATGTCTTT-TAAAAA-TC-CTTTAAACAAAGACGA
64 ATAATCGAACATCCCTTTAGAATTTCACTCATGT-TTTCTAAAAACTCTCTCAAAACAAAGACAA
32421026 TGTTC
128 TGTTC
* *
32421031 GATATTCGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTTGTAATTTCTCATTTGTTCAAAA
1 GATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTC-TTTGTTCAAAA
** * * * **
32421096 TAATCGAAGGTCCCTTTTGAATTTCACTTATGTTTTCTAAAAACTCTC-CAAAACGAAGGTAATG
65 TAATCGAACATCCCTTTAGAATTTCACTCATGTTTTCTAAAAACTCTCTCAAAACAAAGACAATG
32421160 TTC
130 TTC
* * *
32421163 GATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTC-CTGTTGCTTCCAA
1 GATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCT-TTG-TTCAAA
* * *
32421227 ATAATCGAACATCCCCTATGGAATTTCCCTCATG-TTTCTTAAAAACTCT
64 ATAATCGAACAT-CCCTTTAGAATTTCACTCATGTTTTC-TAAAAACTCT
32421276 AAAAAAATAA
Statistics
Matches: 208, Mismatches: 29, Indels: 14
0.83 0.12 0.06
Matches are distributed among these distances:
130 4 0.02
131 94 0.45
132 82 0.39
133 28 0.13
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (132 bp):
GATATTTGGCAATTCGCGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCTTTGTTCAAAAT
AATCGAACATCCCTTTAGAATTTCACTCATGTTTTCTAAAAACTCTCTCAAAACAAAGACAATGT
TC
Found at i:32421333 original size:133 final size:132
Alignment explanation
Indices: 32420918--32421345 Score: 356
Period size: 133 Copynumber: 3.2 Consensus size: 132
32420908 GCAATTCGCG
* * * * * * *
32420918 GAATCGTGCCCTAACGTGTTGGGTTGCAATTT-TGCGTTTGCTCAAAATGATCGAATATCCCTTT
1 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCT-CATTTGTTCAAAATAATCGAACATCCCTAT
* * * * * * ** *
32420982 AGAATTTCACCCATGTCTTT-TAAAAATCCTTTAAACAAAG-A--CGATGTTCGATATTCGGCAA
65 GGAATTTCACTCATGT-TTTCTAAAAA--CTCTAAAAAAAGAAGGCAATGTTCGATGTTTAGAAA
**
32421043 TTCGCG
127 TTCGAA
* ** * *
32421049 GAATCGTGCCCTATCGTGCTGGGTTGTAATTTCTCATTTGTTCAAAATAATCGAAGGTCCCTTTT
1 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGTTCAAAATAATCGAACATCCCTATG
* ** * * * *
32421114 GAATTTCACTTATGTTTTCTAAAAACTCTCCAAAACGAAGGTAATGTTCGATGTTTGGCAATTCG
66 GAATTTCACTCATGTTTTCTAAAAACTCTAAAAAAAGAAGGCAATGTTCGATGTTTAGAAATTCG
**
32421179 GG
131 AA
*
32421181 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTC-C-TGTTGCTTCCAAATAATCGAACATCCCCT
1 GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCAT-TTG-TTCAAAATAATCGAACAT-CCCT
* *
32421244 ATGGAATTTCCCTCATG-TTTCTTAAAAACTCTAAAAAAATAAGGCAATGCTT-GATGTTTAGAA
63 ATGGAATTTCACTCATGTTTTC-TAAAAACTCTAAAAAAAGAAGGCAATG-TTCGATGTTTAGAA
32421307 ATTCGAA
126 ATTCGAA
*
32421314 GAA-CTGTGCCCTA-CTGTGCTGGGTTTCAATTT
1 GAATC-GTGCCCTATC-GTGCTGGGTTGCAATTT
32421346 TCTCGTTGAA
Statistics
Matches: 246, Mismatches: 39, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
129 7 0.03
130 5 0.02
131 77 0.31
132 75 0.30
133 80 0.33
134 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (132 bp):
GAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCATTTGTTCAAAATAATCGAACATCCCTATG
GAATTTCACTCATGTTTTCTAAAAACTCTAAAAAAAGAAGGCAATGTTCGATGTTTAGAAATTCG
AA
Found at i:32424103 original size:480 final size:481
Alignment explanation
Indices: 32421854--32426456 Score: 7715
Period size: 481 Copynumber: 9.6 Consensus size: 481
32421844 GAGTTTCGAC
* * *
32421854 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGATCCGGGTGAATACTAGGAGTTAATCGAGTT
1 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
32421919 TACTAGTCATTGTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAA
66 TACTAGTCATTGTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAA
* *
32421984 TATTCCGGAAAATAAAAATATTTTTTGAGAAATTAATTTTATGGTTTTAAATATTTTTTGGTTAG
131 TATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAG
* * *
32422049 AGTAAATATTATATTTAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGGAA
196 AGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTAA
* ** * *
32422114 ATAATATTCCAGAAAAT-AATTTTTTTTTAGAAAAATATCACTCAAGAATATCATGAATACTAAT
261 ATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAAT
32422178 ACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTT
326 ACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTT
32422243 TCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGT
391 TCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGT
32422308 CCAAACCTACTTGTAATCGCCCTAAA
456 CCAAACCTACTTGTAATCGCCCTAAA
*
32422334 AATAAGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
1 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
* * * *
32422399 TACTAGCCATTATTTTTTTTAAAAAAAAATAGTTAGCTTAATTTTATTTAAAAATCGGTAAATAA
66 TACTAGTCATTGTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAA
* *
32422464 TATTCTGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTTGTTAG
131 TATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAG
*
32422529 AGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTGAACGGGTAA
196 AGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTAA
* *
32422594 ATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCAATCACGAATATCATTAATACTAAT
261 ATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAAT
* * *
32422659 ACCTCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGATTATCGCCCAATATTTTGCTCTT
326 ACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTT
* *
32422724 TCCTTTCCAGACCACCAAATTCTGCTTATCGTTGATAGAAGCTCATCGATCACAATCCTAATTGT
391 TCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGT
32422789 CCAAACCTACTTGTAATCGCCCTAAA
456 CCAAACCTACTTGTAATCGCCCTAAA
* * * *
32422815 CATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGCATACTAGGAGTTAATCGAGTT
1 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
32422880 TACTAGTCA--------TTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAA
66 TACTAGTCATTGTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAA
* * * * * *
32422937 TATACTGGAAAATAAAAATATTTTTTTAGAAATTAATTTTATGGTTTTAAATA--CTTT--TTAG
131 TATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAG
*
32422998 AGTAATTATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTAA
196 AGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTAA
32423063 ATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAAT
261 ATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAAT
* *
32423128 ACCCCCATCCTTTTAGGCTAGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTATT
326 ACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTT
*
32423193 TCCTTTCCAGACCACCGAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGT
391 TCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGT
*
32423258 CCAAACCTACTTGTAATCACCCTAAA
456 CCAAACCTACTTGTAATCGCCCTAAA
* * *
32423284 AATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGATGGATGCTAGGAGTTAATCGGGTT
1 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
* *
32423349 TACTAGTCATTGTTTTTTTAATAAAAAAATTAGTTAGCTTAATTTCTTTTAAAAATCGGTAAATA
66 TACTAGTCATTGTTTTTTTTA-AAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
** *
32423414 ATATTATGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTATGGTTA
130 ATATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
* *
32423479 GAGTAAATATTTTATTAAAAAGTAAATTAAAATGGAGAAAAGTTACAATATTAACTAAACGGGTA
195 GAGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTA
32423544 AATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAA
260 AATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAA
**
32423609 TACCCCTGTCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCT
325 TACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCT
32423674 TTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTG
390 TTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTG
32423739 TCCAAACCTACTTGTAATCGCCCTAAA
455 TCCAAACCTACTTGTAATCGCCCTAAA
* *
32423766 AATAAGTCTACCAGTTTTGAGTAAGTTTATCGGGTTTCGGGTGAATGCTAGGAGTTAATCGGGTT
1 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
* **
32423831 TACTAGCCATTGTTTTTTTTTTAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAA
66 TACTAGTCATTGTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAA
*
32423895 TATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTTGTTAG
131 TATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAG
*
32423960 AGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTGAACGGGTAA
196 AGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTAA
* *
32424025 ATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCAATCACTAATATCATGAATACTAAT
261 ATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAAT
* * *
32424090 ACCTCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGATTATCGCCCAATATTTTGCTCTT
326 ACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTT
*
32424155 TCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAAAAGCTCCTCGATCACAATCCTAATTGT
391 TCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGT
*
32424220 CCAAACCTACTTGTAATCGCCCTTAA
456 CCAAACCTACTTGTAATCGCCCTAAA
* * * * *
32424246 CATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCAGGTGCATACTAGGAGTTAATCGAGTT
1 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
32424311 TACTAGTCA--------TTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAA
66 TACTAGTCATTGTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAA
* * *
32424368 TATACCGGAAAATAAAAATATTTTTTGAGAAATTAATTTTATGGTTTTAAATA--TTTT--TTAG
131 TATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAG
*
32424429 AGTAATTATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTAA
196 AGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTAA
*
32424494 ATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAAT
261 ATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAAT
* * *
32424559 ACCCCCATCCTTTTAGGCTAGCACACAAATTCTCCCACGGGAGTATCGCCCAATATTTTCCTATT
326 ACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTT
* *
32424624 TCCTTTCCAGACCACCGAGTTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGT
391 TCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGT
*
32424689 CCAAACCTACTTGTAATCACCCTAAA
456 CCAAACCTACTTGTAATCGCCCTAAA
*
32424715 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGATGAATGCTAGGAGTTAATCGGGTT
1 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
32424780 TACTAGTCATTGTTTTTTTAATAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
66 TACTAGTCATTGTTTTTTT--TAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
* *
32424845 AATATTCTGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTATGGTT
129 AATATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
* *
32424910 AGAGTAAATATTTTATTAAAAAGTAAATTAAAATGGAGAAAAGTTACAATATTAACTAAACGGGT
194 AGAGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGT
32424975 AAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTA
259 AAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTA
32425040 ATA-CCCCAGTCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCT
324 ATACCCCCA-TCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCT
32425104 CTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAAT
388 CTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAAT
*
32425169 TGTCCAAACCTACTTGTAATCGACCTAAA
453 TGTCCAAACCTACTTGTAATCGCCCTAAA
* * * * *
32425198 AAGAGGTCTACCAGATTTGATTAAGTTTATCGGGTTCCGGGTGAATACTAGGAGTTAATCGAGTT
1 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
* ***
32425263 TACTAGCCATTGTTTTTTATT-TTTAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
66 TACTAGTCATTGTTTTTT-TTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
32425327 ATATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
130 ATATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
*
32425392 GAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTGA-AATATTAACTAAACGGGT
195 GAGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTT-ACAATATTAACTAAACGGGT
* *
32425456 AAATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACTCATGAATATCATGAATACTA
259 AAATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTA
*
32425521 ATGCCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTC
324 ATACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTC
*
32425586 TTTCCTTTTCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATT
389 TTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATT
*
32425651 GTCCAAACCTACTTGTAA-CAGTCCTAAA
454 GTCCAAACCTACTTGTAATC-GCCCTAAA
32425679 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
1 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
* * *
32425744 TACTAGCCATTG-TTTTTTT-AAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCAGCAAATAA
66 TACTAGTCATTGTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAA
* * * * *
32425807 TATTCCGAAAAATAAAAATGTTTTTTAAGAAATCAATTTGATGGTTTTAAATATTTTTTGGTTAG
131 TATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAG
* * ** *
32425872 AGTAAATATTTTCTTGAAAAATAAATTAAAATTAAGAGAAGTTACAATATCAACTAAACGGGTAA
196 AGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTAA
* *
32425937 ATAATATTCCAGAAAATAAAAATATTTTTAGAAAAATATCACTCATGAATATCATGAATACTAAT
261 ATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAAT
* * **
32426002 GCCCCCATCCTTTTAGGCTGGCACGCAAATTCTTCCACGGGAGTATTACCCAATATTTTCCTCTT
326 ACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTT
*
32426067 TCCTTTTCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGT
391 TCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGT
*
32426132 CCAAACCTACTTGTAATCGTCCTAAA
456 CCAAACCTACTTGTAATCGCCCTAAA
32426158 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
1 AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
* *
32426223 TACTAGTCATTGGTTTTTTTTTAAAAAAATTAGTTAGCTTAATTTCATTGAAAAATCGGTAAATA
66 TACTAGTCATT-GTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
*
32426288 ATATTCCGGAAAA-AAAAATATTTATTGAGAAATCAATTCTATGGTTTTAAATATTTTTTGGTTA
130 ATATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
*
32426352 GAGTAAATATTTTATTGAAAAATAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTA
195 GAGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTA
*
32426417 AATAATATTCTGGAAAATAAAAATATTTTTAGAAAAATAT
260 AATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATAT
32426457 TATCGAAACC
Statistics
Matches: 3871, Mismatches: 213, Indels: 77
0.93 0.05 0.02
Matches are distributed among these distances:
469 687 0.18
471 7 0.00
472 9 0.00
473 181 0.05
477 5 0.00
478 92 0.02
479 546 0.14
480 706 0.18
481 865 0.22
482 423 0.11
483 349 0.09
484 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (481 bp):
AATAGGTCTACCAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAATGCTAGGAGTTAATCGGGTT
TACTAGTCATTGTTTTTTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATAA
TATTCCGGAAAATAAAAATATTTATTGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTAG
AGTAAATATTTTATTGAAAAGTAAATTAAAATGGAGAGAAGTTACAATATTAACTAAACGGGTAA
ATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACTCACGAATATCATGAATACTAAT
ACCCCCATCCTTTTAGGCTGGCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTCCTCTT
TCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCACAATCCTAATTGT
CCAAACCTACTTGTAATCGCCCTAAA
Found at i:32434520 original size:29 final size:29
Alignment explanation
Indices: 32434478--32434540 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
32434468 GGAAGAATGA
32434478 ATATTATCCCAAAGAGATCAAGGATATCC
1 ATATTATCCCAAAGAGATCAAGGATATCC
32434507 ATATTATCCCAAAGAGATCAAGGATATCC
1 ATATTATCCCAAAGAGATCAAGGATATCC
32434536 -TATTA
1 ATATTA
32434541 GGGTAACATA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 5 0.15
29 29 0.85
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (29 bp):
ATATTATCCCAAAGAGATCAAGGATATCC
Found at i:32435110 original size:26 final size:26
Alignment explanation
Indices: 32435081--32435130 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
32435071 GGCAAATTCA
32435081 TCAAAATTTTGCTAGGGGTAAAATCG
1 TCAAAATTTTGCTAGGGGTAAAATCG
*
32435107 TCAAAATTTTGTTAGGGGTAAAAT
1 TCAAAATTTTGCTAGGGGTAAAAT
32435131 AGGGATGAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTGCTAGGGGTAAAATCG
Found at i:32438917 original size:29 final size:29
Alignment explanation
Indices: 32438826--32439031 Score: 142
Period size: 28 Copynumber: 7.3 Consensus size: 29
32438816 TCATATTACA
* * *
32438826 CCACAAAGGCATT-CTTTTGATAGAGATTG
1 CCACAAAGGC-TTCCTTTTAACAGAGATAG
** *
32438855 TAACAAGGGCTTCCTTTTTAACAGAGATCA-
1 CCACAAAGGCTTCC-TTTTAACAGAGAT-AG
*
32438885 CCACAGAGGCTTCCTTTTAACAGAGATAG
1 CCACAAAGGCTTCCTTTTAACAGAGATAG
*
32438914 CCACAAAGGCTTCC-TTTAACAGATATAG
1 CCACAAAGGCTTCCTTTTAACAGAGATAG
* * *
32438942 CCTCAAAGGCTT-CATTT-A-ATAGATCA-
1 CCACAAAGGCTTCCTTTTAACAGAGAT-AG
* * * * *
32438968 CCACAAATGATT-CTTATAACTGAGATCG
1 CCACAAAGGCTTCCTTTTAACAGAGATAG
* * *
32438996 TCATAAAGGCTT-CTTTTAATAGAGATAG
1 CCACAAAGGCTTCCTTTTAACAGAGATAG
32439024 CCACAAAG
1 CCACAAAG
32439032 ACTTACTTAT
Statistics
Matches: 135, Mismatches: 33, Indels: 19
0.72 0.18 0.10
Matches are distributed among these distances:
26 16 0.12
27 4 0.03
28 60 0.44
29 34 0.25
30 21 0.16
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (29 bp):
CCACAAAGGCTTCCTTTTAACAGAGATAG
Found at i:32444226 original size:20 final size:20
Alignment explanation
Indices: 32444201--32444254 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
32444191 CGAGTAGGGG
32444201 ACACGGGCGTGTGCCAAAGC
1 ACACGGGCGTGTGCCAAAGC
32444221 ACACGGGCGTGTGCCAAAGC
1 ACACGGGCGTGTGCCAAAGC
*
32444241 ACACGGGCATGTGC
1 ACACGGGCGTGTGC
32444255 GTTGCCTCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.24, C:0.30, G:0.35, T:0.11
Consensus pattern (20 bp):
ACACGGGCGTGTGCCAAAGC
Found at i:32446852 original size:21 final size:21
Alignment explanation
Indices: 32446827--32446903 Score: 66
Period size: 21 Copynumber: 3.5 Consensus size: 21
32446817 ACATCATAAA
32446827 CTCAGACCACAACTCAATGAG
1 CTCAGACCACAACTCAATGAG
* * * *
32446848 TTCAGATGTCACATATATC-ATGAA
1 CTCAGA--CCACA-A-CTCAATGAG
32446872 CTCAGACCACAACTCAATGAG
1 CTCAGACCACAACTCAATGAG
*
32446893 CTCAGATCACA
1 CTCAGACCACA
32446904 TAGTTCCTAG
Statistics
Matches: 42, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
20 2 0.05
21 20 0.48
22 4 0.10
23 4 0.10
24 10 0.24
25 2 0.05
ACGTcount: A:0.38, C:0.29, G:0.13, T:0.21
Consensus pattern (21 bp):
CTCAGACCACAACTCAATGAG
Found at i:32446874 original size:45 final size:45
Alignment explanation
Indices: 32446809--32446899 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
32446799 CCAAAACATG
*
32446809 TGTCACATACATCATAAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATACATCATAAACTCAGACCACAACTCAATGAGCTCAGA
* *
32446854 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGCTCAGA
1 TGTCACATACATCATAAACTCAGACCACAACTCAATGAGCTCAGA
32446899 T
1 T
32446900 CACATAGTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.38, C:0.26, G:0.12, T:0.23
Consensus pattern (45 bp):
TGTCACATACATCATAAACTCAGACCACAACTCAATGAGCTCAGA
Found at i:32449440 original size:24 final size:24
Alignment explanation
Indices: 32449413--32449470 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
32449403 ACAAAGCCTA
*
32449413 CTAAATACACCTGCTTGAGGTCTG
1 CTAAATACACCTACTTGAGGTCTG
*
32449437 CTAAATACACCTACTTGAGGTTTG
1 CTAAATACACCTACTTGAGGTCTG
32449461 CTAAATACAC
1 CTAAATACAC
32449471 TAGCATGTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (24 bp):
CTAAATACACCTACTTGAGGTCTG
Found at i:32453005 original size:17 final size:17
Alignment explanation
Indices: 32452983--32453015 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32452973 GAATTCTTAA
32452983 TTTTTTAAAGTTTTATT
1 TTTTTTAAAGTTTTATT
*
32453000 TTTTTTAAATTTTTAT
1 TTTTTTAAAGTTTTAT
32453016 AACTTATAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTTTTAAAGTTTTATT
Found at i:32454131 original size:30 final size:30
Alignment explanation
Indices: 32454091--32454153 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
32454081 GATTTTTTTA
*
32454091 TTAAATTTATT-G-ATTGATTTTTCTTAATTT
1 TTAAAGTTATTAGTATT-ATTTTT-TTAATTT
*
32454121 TTAAAGTTATTAGTATTATTTTTTTATTTT
1 TTAAAGTTATTAGTATTATTTTTTTAATTT
32454151 TTA
1 TTA
32454154 GATATTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 19 0.66
31 7 0.24
32 3 0.10
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (30 bp):
TTAAAGTTATTAGTATTATTTTTTTAATTT
Found at i:32459541 original size:14 final size:15
Alignment explanation
Indices: 32459522--32459631 Score: 87
Period size: 18 Copynumber: 6.5 Consensus size: 15
32459512 AATCTTCAAT
32459522 GATATG-CAATCTTA
1 GATATGACAATCTTA
32459536 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
32459553 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
32459571 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
32459590 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
32459607 GATATGATTTCAATCTTA
1 GATATGA---CAATCTTA
32459625 GATATGA
1 GATATGA
32459632 TATGCAATCT
Statistics
Matches: 85, Mismatches: 0, Indels: 18
0.83 0.00 0.17
Matches are distributed among these distances:
14 6 0.07
15 2 0.02
17 28 0.33
18 29 0.34
19 19 0.22
20 1 0.01
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:32459566 original size:35 final size:36
Alignment explanation
Indices: 32459520--32459645 Score: 195
Period size: 35 Copynumber: 3.5 Consensus size: 36
32459510 ATAATCTTCA
32459520 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
32459556 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATA--CAATCTTAGAT
*
32459593 ATGATA--CAATCTTAGATATGATTTCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGA-TACAATCTTAGAT
32459628 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
32459646 AGATATGATT
Statistics
Matches: 83, Mismatches: 1, Indels: 11
0.87 0.01 0.12
Matches are distributed among these distances:
35 36 0.43
36 20 0.24
37 27 0.33
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (36 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGAT
Found at i:32459578 original size:54 final size:54
Alignment explanation
Indices: 32459520--32459645 Score: 243
Period size: 54 Copynumber: 2.3 Consensus size: 54
32459510 ATAATCTTCA
32459520 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
*
32459574 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTTCAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
32459628 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
32459646 AGATATGATT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATATGATACAATCTTAGATATGATTGCAATCTTAGAT
Found at i:32459652 original size:17 final size:19
Alignment explanation
Indices: 32459520--32459645 Score: 201
Period size: 19 Copynumber: 6.9 Consensus size: 19
32459510 ATAATCTTCA
32459520 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32459539 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32459556 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32459574 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32459593 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
32459610 ATGAT-TTCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32459628 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
32459646 AGATATGATT
Statistics
Matches: 100, Mismatches: 1, Indels: 12
0.88 0.01 0.11
Matches are distributed among these distances:
17 32 0.32
18 32 0.32
19 36 0.36
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:32459671 original size:22 final size:22
Alignment explanation
Indices: 32459520--32459668 Score: 94
Period size: 19 Copynumber: 7.8 Consensus size: 22
32459510 ATAATCTTCA
32459520 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32459539 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32459556 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32459574 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32459593 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
32459610 ATGAT-TTCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
32459628 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
32459650 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
32459669 GATTTAATTT
Statistics
Matches: 117, Mismatches: 3, Indels: 16
0.86 0.02 0.12
Matches are distributed among these distances:
17 32 0.27
18 32 0.27
19 33 0.28
22 8 0.07
23 12 0.10
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:32465636 original size:24 final size:24
Alignment explanation
Indices: 32465586--32465638 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
32465576 AATCGAATTT
*
32465586 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
32465610 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
32465634 GCACA
1 GCACA
32465639 TTCAGTGCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 18 0.69
25 5 0.19
26 3 0.12
ACGTcount: A:0.30, C:0.36, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:32474333 original size:78 final size:78
Alignment explanation
Indices: 32474204--32474498 Score: 441
Period size: 78 Copynumber: 3.8 Consensus size: 78
32474194 CGAAGAAACA
** * * *
32474204 GATTTGGCATCTCCATATTCGAC-AGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTATTGA
1 GATTTGGCATCTCTGTATTAGACGAG-GAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGA
32474268 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* *
32474282 GATTTGGCATCTCTGTATTAGACGAGGAGTAGATCAAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
32474347 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
32474360 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATCAAAGACATAACAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGACATAGCAGATCT-GACCTTCATTGA
*
32474424 AGCATATCCAAGAT
65 AGCAGATCCAAGAT
* *
32474438 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGACATAGCAGATCTGACCTTCAT
32474499 GTGTTTACAT
Statistics
Matches: 198, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
77 1 0.01
78 194 0.98
79 3 0.02
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGAGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:32474696 original size:45 final size:45
Alignment explanation
Indices: 32474438--32474712 Score: 297
Period size: 45 Copynumber: 6.1 Consensus size: 45
32474428 TATCCAAGAT
*
32474438 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
32474485 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* *
32474530 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATTGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
32474575 GATTTGGCATCTCTGTATTAGACGTGGAGCAAAT-TAGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGA-AGATAACA
32474620 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * * *
32474665 GATTTGGCGTCTCTGTATTAGATGGGAAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
32474710 GAT
1 GAT
32474713 ATCGCCTTCT
Statistics
Matches: 191, Mismatches: 29, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
43 1 0.01
44 5 0.03
45 153 0.80
46 5 0.03
47 22 0.12
48 4 0.02
49 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:32474706 original size:90 final size:90
Alignment explanation
Indices: 32474438--32474712 Score: 331
Period size: 90 Copynumber: 3.0 Consensus size: 90
32474428 TATCCAAGAT
* * * *
32474438 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCT-TCATGTG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACAGATTTGGCATCTC-TGT-
* * * * *
32474502 TTTACAT-CGAAGCAGATCCAAGATGACA
62 ATTAGATGGGAAGCAGATCAAAGATAACA
* *
32474530 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATTGAAGATAACAGATTTGGCATCTCTGTATTA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTA
* * * *
32474595 GACGTGG-AGCAAATTAGAGATAACA
66 GATG-GGAAGCAGATCAAAGATAACA
*
32474620 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTA
*
32474685 GATGGGAAGCAGATCAAAGATAGCA
66 GATGGGAAGCAGATCAAAGATAACA
32474710 GAT
1 GAT
32474713 ATCGCCTTCT
Statistics
Matches: 156, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
89 6 0.04
90 110 0.71
91 3 0.02
92 37 0.24
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.26
Consensus pattern (90 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTA
GATGGGAAGCAGATCAAAGATAACA
Found at i:32475113 original size:18 final size:19
Alignment explanation
Indices: 32475065--32475136 Score: 119
Period size: 19 Copynumber: 3.8 Consensus size: 19
32475055 ATAATCTTCA
32475065 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
32475084 ACGATATGCAATATTAGAT
1 ATGATATGCAATCTTAGAT
32475103 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32475121 ATGATATGCAATCTTA
1 ATGATATGCAATCTTA
32475137 AAAGATATGA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
18 17 0.35
19 31 0.65
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:32475164 original size:22 final size:22
Alignment explanation
Indices: 32475065--32475147 Score: 78
Period size: 19 Copynumber: 4.2 Consensus size: 22
32475055 ATAATCTTCA
32475065 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAAAAGAT
* *
32475084 ACGATATGCAATATT---AGAT
1 ATGATATGCAATCTTAAAAGAT
32475103 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAAAAGAT
32475121 ATGATATGCAATCTTAAAAGAT
1 ATGATATGCAATCTTAAAAGAT
32475143 ATGAT
1 ATGAT
32475148 TTTGTAATCT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
18 17 0.30
19 30 0.54
22 9 0.16
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.35
Consensus pattern (22 bp):
ATGATATGCAATCTTAAAAGAT
Found at i:32477069 original size:40 final size:39
Alignment explanation
Indices: 32477024--32477158 Score: 137
Period size: 40 Copynumber: 3.4 Consensus size: 39
32477014 GTTATTTGTG
* *
32477024 GCACTTATTGTGCGATATGACATAACTTCGGCTATATATA
1 GCACTTAGTGTGCGAT-TGACATAGCTTCGGCTATATATA
* ** *
32477064 GCACTTAGTGTGCGATTCAACATAGCTTTAGCTATATATG
1 GCACTTAGTGTGCGATT-GACATAGCTTCGGCTATATATA
* * * *
32477104 GCACTTAGTGTGCAATTTGAGATAGCTTCGGCTATGTA-C
1 GCACTTAGTGTGCGA-TTGACATAGCTTCGGCTATATATA
32477143 GACACTTAGTGTGCGA
1 G-CACTTAGTGTGCGA
32477159 GATATTGAGT
Statistics
Matches: 78, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 2 0.03
40 74 0.95
41 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (39 bp):
GCACTTAGTGTGCGATTGACATAGCTTCGGCTATATATA
Found at i:32477183 original size:28 final size:28
Alignment explanation
Indices: 32477143--32477198 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
32477133 GGCTATGTAC
*
32477143 GACACTTAGTGTGCGAGATATTGAGTAT
1 GACACTTAGTGTGCGAGACATTGAGTAT
*
32477171 GACACTTAGTGTGCGAGACCTTGAGTAT
1 GACACTTAGTGTGCGAGACATTGAGTAT
32477199 TCAACGACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
GACACTTAGTGTGCGAGACATTGAGTAT
Found at i:32477418 original size:17 final size:17
Alignment explanation
Indices: 32477396--32477430 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
32477386 ATCAGTTAAG
32477396 TTTATATCATACGAGCT
1 TTTATATCATACGAGCT
32477413 TTTATATCATACGAGCT
1 TTTATATCATACGAGCT
32477430 T
1 T
32477431 ACTAAGCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (17 bp):
TTTATATCATACGAGCT
Found at i:32477448 original size:17 final size:17
Alignment explanation
Indices: 32477426--32477482 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
32477416 ATATCATACG
32477426 AGCTTACTAAGCTATGA
1 AGCTTACTAAGCTATGA
* * *
32477443 AACTTA-T-ATCATACG-
1 AGCTTACTAAGC-TATGA
32477458 AGCTTACTAAGCTATGA
1 AGCTTACTAAGCTATGA
32477475 AGCTTACT
1 AGCTTACT
32477483 CTATGTTATT
Statistics
Matches: 30, Mismatches: 6, Indels: 8
0.68 0.14 0.18
Matches are distributed among these distances:
15 7 0.23
16 8 0.27
17 15 0.50
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (17 bp):
AGCTTACTAAGCTATGA
Found at i:32477455 original size:32 final size:32
Alignment explanation
Indices: 32477414--32477480 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
32477404 ATACGAGCTT
32477414 TTATATCATACGAGCTTACTAAGCTATGAAAC
1 TTATATCATACGAGCTTACTAAGCTATGAAAC
*
32477446 TTATATCATACGAGCTTACTAAGCTATGAAGC
1 TTATATCATACGAGCTTACTAAGCTATGAAAC
32477478 TTA
1 TTA
32477481 CTCTATGTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (32 bp):
TTATATCATACGAGCTTACTAAGCTATGAAAC
Done.