Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 101 of 325
Found at i:32483566 original size:40 final size:40
Alignment explanation
Indices: 32483432--32483568 Score: 166
Period size: 40 Copynumber: 3.4 Consensus size: 40
32483422 CAGTTATTTG
* *
32483432 TGGCACTTAGTGTGCGATATGACATAACTTCGGCTATACA
1 TGGCACTTAGTGTGCGATTTGACATAACTTCGGCTATATA
** *
32483472 TGGCACTTAGTGTGCGATTCAACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTTGACATAACTTCGGCTATATA
* * * *
32483512 TGGCCCTTAGTGTGCGATTTGAGATAACTTCGACTATGTA
1 TGGCACTTAGTGTGCGATTTGACATAACTTCGGCTATATA
* * *
32483552 CGACACTTAATGTGCGA
1 TGGCACTTAGTGTGCGA
32483569 GATATCGAGT
Statistics
Matches: 81, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTTGACATAACTTCGGCTATATA
Found at i:32483595 original size:28 final size:28
Alignment explanation
Indices: 32483555--32483608 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
32483545 CTATGTACGA
32483555 CACTTAATGTGCGAGATATCGAGTATGC
1 CACTTAATGTGCGAGATATCGAGTATGC
*
32483583 CACTTAGTGTGCGAGATATCGAGTAT
1 CACTTAATGTGCGAGATATCGAGTAT
32483609 TAAATGGCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (28 bp):
CACTTAATGTGCGAGATATCGAGTATGC
Found at i:32487684 original size:27 final size:27
Alignment explanation
Indices: 32487653--32487830 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32487643 TAAATTGTAC
32487653 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32487680 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32487706 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32487734 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32487762 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32487789 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32487816 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32487831 GACTCATATA
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32487767 original size:82 final size:81
Alignment explanation
Indices: 32487654--32487809 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32487644 AAATTGTACA
* *
32487654 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32487718 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32487735 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32487800 TGCGAGTTGA
65 TGCGAATTGA
32487810 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32487821 original size:82 final size:81
Alignment explanation
Indices: 32487650--32487830 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32487640 GATTAAATTG
* *
32487650 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32487715 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32487731 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32487795 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32487813 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32487831 GACTCATATA
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32495856 original size:27 final size:27
Alignment explanation
Indices: 32495825--32496002 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32495815 TAAATTGTAC
32495825 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
32495852 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32495878 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
32495906 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
32495934 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
32495961 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
32495988 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
32496003 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:32495939 original size:82 final size:81
Alignment explanation
Indices: 32495826--32495981 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
32495816 AAATTGTACA
* *
32495826 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
32495890 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32495907 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
32495972 TGCGAGTTGA
65 TGCGAATTGA
32495982 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32495993 original size:82 final size:81
Alignment explanation
Indices: 32495822--32496002 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
32495812 GATTAAATTG
* *
32495822 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
32495887 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
32495903 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
32495967 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
32495985 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
32496003 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:32501029 original size:23 final size:23
Alignment explanation
Indices: 32500999--32501057 Score: 118
Period size: 23 Copynumber: 2.6 Consensus size: 23
32500989 TGGGTAGGGG
32500999 ACACGGGCGTGTGCATTGCCTCT
1 ACACGGGCGTGTGCATTGCCTCT
32501022 ACACGGGCGTGTGCATTGCCTCT
1 ACACGGGCGTGTGCATTGCCTCT
32501045 ACACGGGCGTGTG
1 ACACGGGCGTGTG
32501058 AGGCTTAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.14, C:0.29, G:0.34, T:0.24
Consensus pattern (23 bp):
ACACGGGCGTGTGCATTGCCTCT
Found at i:32507307 original size:40 final size:40
Alignment explanation
Indices: 32507262--32507390 Score: 118
Period size: 40 Copynumber: 3.2 Consensus size: 40
32507252 TATTTGTGGT
*
32507262 ACTTAGTGTGAGATGT-AACATAACTTCTGCTATATATGGC
1 ACTTAGTGTGAGAT-TCAACATAACTTCGGCTATATATGGC
* * * *
32507302 ACTTAGTATGTGATTCGACATAGCTTCGGCTATATATGGC
1 ACTTAGTGTGAGATTCAACATAACTTCGGCTATATATGGC
* ** * * * *
32507342 GCTTAGTGTGCA-ATTTGAGATAGCTTCGGCTATGTATGAC
1 ACTTAGTGTG-AGATTCAACATAACTTCGGCTATATATGGC
32507382 ACTTAGTGT
1 ACTTAGTGT
32507391 ATGAGATATC
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 73 0.99
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.36
Consensus pattern (40 bp):
ACTTAGTGTGAGATTCAACATAACTTCGGCTATATATGGC
Found at i:32507424 original size:28 final size:28
Alignment explanation
Indices: 32507375--32507435 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
32507365 CTTCGGCTAT
* *
32507375 GTATGACACTTAGTGTATGAGATATCGA
1 GTATGACACTTAGTGTACGAGACATCGA
* * *
32507403 GTATGGCACTTAGTGTGCGAGACATTGA
1 GTATGACACTTAGTGTACGAGACATCGA
32507431 GTATG
1 GTATG
32507436 TTATGGATTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (28 bp):
GTATGACACTTAGTGTACGAGACATCGA
Found at i:32509600 original size:43 final size:43
Alignment explanation
Indices: 32509552--32509719 Score: 171
Period size: 43 Copynumber: 3.9 Consensus size: 43
32509542 TGAGGTATGT
* * *
32509552 AGCATCTGAGCTTGTTGAGAGGTCTGAGTTCATTATGGATGCA
1 AGCATCCGAGCTCGTTGAGAGGTCTGAGTTCATGATGGATGCA
* * * * * *
32509595 AGCATCCGGGCTGGTTGAGTGGTCTGGGTTCGTGA-GGTATG-T
1 AGCATCCGAGCTCGTTGAGAGGTCTGAGTTCATGATGG-ATGCA
* * *
32509637 AGCATCCGAGCTCATTGAGAGAT-TCGAGTTCATTATGGATGCA
1 AGCATCCGAGCTCGTTGAGAGGTCT-GAGTTCATGATGGATGCA
* *
32509680 AGCATTCGGGCTCGTTGAGAGGTCTGAGTTCATGATGGAT
1 AGCATCCGAGCTCGTTGAGAGGTCTGAGTTCATGATGGAT
32509720 ATGATTCATG
Statistics
Matches: 98, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
41 1 0.01
42 30 0.31
43 66 0.67
44 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.30
Consensus pattern (43 bp):
AGCATCCGAGCTCGTTGAGAGGTCTGAGTTCATGATGGATGCA
Found at i:32509655 original size:42 final size:42
Alignment explanation
Indices: 32509520--32509655 Score: 139
Period size: 42 Copynumber: 3.2 Consensus size: 42
32509510 GAAGTCTAAA
** *
32509520 CTCGTTGAGTGGTCCAGGTTCGTGAGGTATGTAGCATCTGAG
1 CTCGTTGAGTGGTCTGGGTTCGTGAGGTATGTAGCATCCGAG
* * * * * * *
32509562 CTTGTTGAGAGGTCTGAGTTCATTATGG-ATGCAAGCATCCGGG
1 CTCGTTGAGTGGTCTGGGTTCGTGA-GGTATG-TAGCATCCGAG
*
32509605 CTGGTTGAGTGGTCTGGGTTCGTGAGGTATGTAGCATCCGAG
1 CTCGTTGAGTGGTCTGGGTTCGTGAGGTATGTAGCATCCGAG
*
32509647 CTCATTGAG
1 CTCGTTGAG
32509656 AGATTCGAGT
Statistics
Matches: 72, Mismatches: 19, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
42 39 0.54
43 33 0.46
ACGTcount: A:0.18, C:0.16, G:0.35, T:0.31
Consensus pattern (42 bp):
CTCGTTGAGTGGTCTGGGTTCGTGAGGTATGTAGCATCCGAG
Found at i:32509666 original size:85 final size:84
Alignment explanation
Indices: 32509520--32509771 Score: 297
Period size: 85 Copynumber: 2.9 Consensus size: 84
32509510 GAAGTCTAAA
** * * *
32509520 CTCGTTGAGTGGTCCAGGTTCGTGAGGTATGTAGCATCTGAGCTTGTTGAGAGGTCTGAGTTCAT
1 CTCGTTGAGTGGTCTGGGTTCGTGAGGTATGTAGCATCCGAGCTCGTTGAGAGTTC-GAGTTCAT
32509585 TATGGATGCAAGCATCCGGG
65 TATGGATGCAAGCATCCGGG
* *
32509605 CTGGTTGAGTGGTCTGGGTTCGTGAGGTATGTAGCATCCGAGCTCATTGAGAGATTCGAGTTCAT
1 CTCGTTGAGTGGTCTGGGTTCGTGAGGTATGTAGCATCCGAGCTCGTTGAGAG-TTCGAGTTCAT
*
32509670 TATGGATGCAAGCATTCGGG
65 TATGGATGCAAGCATCCGGG
* * *
32509690 CTCGTTGAGAGGTCTGAGTTCATGATGGATATGATTCATGTAACATCCGAGCTCGTTGAGAGGTT
1 CTCGTTGAGTGGTCTGGGTTCGTGA-GG-TATG--T-A-G---CATCCGAGCTCGTTGAGA-GTT
32509755 CGAGTTCATTATGGATG
56 CGAGTTCATTATGGATG
32509772 TGTTACATGT
Statistics
Matches: 143, Mismatches: 13, Indels: 13
0.85 0.08 0.08
Matches are distributed among these distances:
85 95 0.66
86 4 0.03
87 4 0.03
89 1 0.01
90 1 0.01
91 1 0.01
94 36 0.25
95 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (84 bp):
CTCGTTGAGTGGTCTGGGTTCGTGAGGTATGTAGCATCCGAGCTCGTTGAGAGTTCGAGTTCATT
ATGGATGCAAGCATCCGGG
Found at i:32512789 original size:43 final size:42
Alignment explanation
Indices: 32512736--32512881 Score: 143
Period size: 43 Copynumber: 3.4 Consensus size: 42
32512726 TTATGTAAAA
* *
32512736 AAATGCCGCTAAAGAACATGGCCTTTAGCGGCGCTTTACCAAC
1 AAATGTCGCTAAAGAACATGGCCTTTAGCGGCGCTTT-CCCAC
* * *
32512779 AAATGTCGCTAAAGAACATGGTCTTTCGTGGCGCTTTTTCCCAC
1 AAATGTCGCTAAAGAACATGGCCTTTAGCGGCGC--TTTCCCAC
* ** *
32512823 AAATG-CTGCTATAGAACA-AACCTTTAGCGGTGCTTTCCCAC
1 AAATGTC-GCTAAAGAACATGGCCTTTAGCGGCGCTTTCCCAC
* *
32512864 AAACGTCGCTATAGAACA
1 AAATGTCGCTAAAGAACA
32512882 AACCTGTAGC
Statistics
Matches: 86, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 23 0.27
42 1 0.01
43 40 0.47
44 19 0.22
45 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
AAATGTCGCTAAAGAACATGGCCTTTAGCGGCGCTTTCCCAC
Found at i:32512875 original size:41 final size:42
Alignment explanation
Indices: 32512814--32512911 Score: 128
Period size: 41 Copynumber: 2.4 Consensus size: 42
32512804 TCGTGGCGCT
* * **
32512814 TTTTCCCACAAATGCTGCTATAGAACAAACCTTTAGCGGTGC
1 TTTTCCCACAAACGCTGCTATAGAACAAACCTGTAGCAATGC
32512856 -TTTCCCACAAACG-TCGCTATAGAACAAACCTGTAGCAATGC
1 TTTTCCCACAAACGCT-GCTATAGAACAAACCTGTAGCAATGC
*
32512897 TTTTCCCATAAACGC
1 TTTTCCCACAAACGC
32512912 CACTAAAGAG
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
40 1 0.02
41 35 0.73
42 12 0.25
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (42 bp):
TTTTCCCACAAACGCTGCTATAGAACAAACCTGTAGCAATGC
Found at i:32514448 original size:28 final size:28
Alignment explanation
Indices: 32514415--32514517 Score: 116
Period size: 28 Copynumber: 3.7 Consensus size: 28
32514405 ATTGTATGAC
*
32514415 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * *
32514443 TATGAAAGTGATTGGGCCTAATGGGCCG
1 TATGAATGTGATTGGGCCTGATGGGCCA
* * * *
32514471 TATGAATATGGTTAGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
32514499 AATGAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
32514518 AAAGGGGCCA
Statistics
Matches: 58, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:32515806 original size:17 final size:18
Alignment explanation
Indices: 32515773--32515806 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32515763 TTCAAAGAAG
32515773 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
32515791 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
32515807 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:32521127 original size:40 final size:40
Alignment explanation
Indices: 32521083--32521175 Score: 109
Period size: 41 Copynumber: 2.3 Consensus size: 40
32521073 CATGTTATTT
32521083 TCATCTTTCTATCA-CTCAAATT-TCATATCTAGAGTAGTTA
1 TCATCTTT-T-TCAGCTCAAATTCTCATATCTAGAGTAGTTA
* * * *
32521123 TCATCTTTTTCATGTTGAAGTTCTTATATCTAGAGTAGTTA
1 TCATCTTTTTCA-GCTCAAATTCTCATATCTAGAGTAGTTA
32521164 TCATCTTTTTCA
1 TCATCTTTTTCA
32521176 TGTTGAAGTT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
38 3 0.07
39 1 0.02
40 13 0.28
41 29 0.63
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (40 bp):
TCATCTTTTTCAGCTCAAATTCTCATATCTAGAGTAGTTA
Found at i:32521155 original size:41 final size:41
Alignment explanation
Indices: 32521107--32521189 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
32521097 CTCAAATTTC
32521107 ATATCTAGAGTAGTTATCATCTTTTTCATGTTGAAGTTCTT
1 ATATCTAGAGTAGTTATCATCTTTTTCATGTTGAAGTTCTT
32521148 ATATCTAGAGTAGTTATCATCTTTTTCATGTTGAAGTTCTT
1 ATATCTAGAGTAGTTATCATCTTTTTCATGTTGAAGTTCTT
32521189 A
1 A
32521190 CTCATTGCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.25, C:0.12, G:0.14, T:0.48
Consensus pattern (41 bp):
ATATCTAGAGTAGTTATCATCTTTTTCATGTTGAAGTTCTT
Found at i:32530785 original size:26 final size:26
Alignment explanation
Indices: 32530749--32530801 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
32530739 GGGCTAAGGG
32530749 ATTGTGTTATAATTGTGACGAGTCTT
1 ATTGTGTTATAATTGTGACGAGTCTT
32530775 ATTGTGTTATAATTGTGACGAGTCTT
1 ATTGTGTTATAATTGTGACGAGTCTT
32530801 A
1 A
32530802 CTCCATGGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.25, C:0.08, G:0.23, T:0.45
Consensus pattern (26 bp):
ATTGTGTTATAATTGTGACGAGTCTT
Found at i:32563156 original size:42 final size:43
Alignment explanation
Indices: 32563109--32563202 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 43
32563099 TGAGATATCG
* ** *
32563109 TGTAAGACCGTGTCTGGGACATTGGCATCG-TATCTG-ATTTCA
1 TGTAAGACCCTGTCTGGGACAGAGGCATCGATAT-TGAATTACA
*
32563151 TGTAAGACCCTGTCTGGGGCAGAGGCATCGATATTGAATTACA
1 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACA
32563194 TGTAAGACC
1 TGTAAGACC
32563203 ACGTCTAGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
42 28 0.62
43 17 0.38
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACA
Found at i:32565207 original size:27 final size:27
Alignment explanation
Indices: 32565177--32565232 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
32565167 TAATTGAGTC
*
32565177 AAGACTCAATGAGTGAGTGTTATACTT
1 AAGACTCAATGAGCGAGTGTTATACTT
32565204 AAGACTCAATGAGCGAGTGTTATACTT
1 AAGACTCAATGAGCGAGTGTTATACTT
32565231 AA
1 AA
32565233 ATTAATGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (27 bp):
AAGACTCAATGAGCGAGTGTTATACTT
Found at i:32566440 original size:19 final size:19
Alignment explanation
Indices: 32566416--32566525 Score: 172
Period size: 19 Copynumber: 5.9 Consensus size: 19
32566406 ATAATCTTCA
32566416 ATGATATACAATCTTAGAT
1 ATGATATACAATCTTAGAT
*
32566435 ATGATATGCAATCTTAGAT
1 ATGATATACAATCTTAGAT
32566454 ATG--ATACAATCTTAGAT
1 ATGATATACAATCTTAGAT
*
32566471 ATGAT-TGCAATCTTAGAT
1 ATGATATACAATCTTAGAT
*
32566489 ATGATATGCAATCTTAGAT
1 ATGATATACAATCTTAGAT
32566508 ATGATATACAATCTTAGA
1 ATGATATACAATCTTAGA
32566526 AGATATGATT
Statistics
Matches: 84, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
17 16 0.19
18 17 0.20
19 51 0.61
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATACAATCTTAGAT
Found at i:32571529 original size:44 final size:46
Alignment explanation
Indices: 32571416--32571537 Score: 196
Period size: 45 Copynumber: 2.7 Consensus size: 46
32571406 GGTTGAGCAT
**
32571416 CCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCC
32571461 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-CC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCC
*
32571505 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32571538 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
44 32 0.44
45 33 0.45
46 8 0.11
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCC
Found at i:32578978 original size:46 final size:46
Alignment explanation
Indices: 32578928--32579053 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
32578918 TGGTTGAGCA
*
32578928 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
32578974 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
32579020 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32579054 GGGGCGGGTT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:32583882 original size:7 final size:7
Alignment explanation
Indices: 32583865--32583920 Score: 55
Period size: 7 Copynumber: 7.9 Consensus size: 7
32583855 CTATTTCAAA
32583865 AAAAAAGG
1 AAAAAA-G
32583873 AAAAAAG
1 AAAAAAG
32583880 --AAAAG
1 AAAAAAG
32583885 -AAAAAG
1 AAAAAAG
32583891 AAAAAAAG
1 -AAAAAAG
32583899 AAAAAAAAG
1 --AAAAAAG
32583908 AAAAAAG
1 AAAAAAG
32583915 AAAAAA
1 AAAAAA
32583921 TGGAGAGGCC
Statistics
Matches: 44, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
5 5 0.11
6 5 0.11
7 14 0.32
8 12 0.27
9 8 0.18
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:32583883 original size:6 final size:6
Alignment explanation
Indices: 32583874--32583919 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
32583864 AAAAAAAGGA
32583874 AAAAAG -AAAAG AAAAAG AAAAA- AAGAAA- AAAAAG AAAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AA-AAAG AAAAAG -AAAAAG AAAAA
32583920 ATGGAGAGGC
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
5 10 0.28
6 20 0.56
7 6 0.17
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:32583894 original size:16 final size:14
Alignment explanation
Indices: 32583862--32583920 Score: 66
Period size: 15 Copynumber: 4.1 Consensus size: 14
32583852 CTTCTATTTC
*
32583862 AAAAAAAAAG-GAA
1 AAAAAAAAAGAAAA
*
32583875 AAAAGAAAAGAAAA
1 AAAAAAAAAGAAAA
*
32583889 AGAAAAAAAGAAAAA
1 AAAAAAAAAG-AAAA
32583904 AAAGAAAAAAGAAAA
1 AAA-AAAAAAGAAAA
32583919 AA
1 AA
32583921 TGGAGAGGCC
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
13 9 0.24
14 10 0.26
15 12 0.32
16 7 0.18
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAGAAAA
Found at i:32583894 original size:17 final size:18
Alignment explanation
Indices: 32583862--32583920 Score: 84
Period size: 18 Copynumber: 3.3 Consensus size: 18
32583852 CTTCTATTTC
*
32583862 AAAAAAAAAGGAAAAAAG
1 AAAAAAAAAAGAAAAAAG
*
32583880 AAAAGAAAAAGAAAAAA-
1 AAAAAAAAAAGAAAAAAG
*
32583897 AGAAAAAAAAGAAAAAAG
1 AAAAAAAAAAGAAAAAAG
32583915 AAAAAA
1 AAAAAA
32583921 TGGAGAGGCC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
17 15 0.43
18 20 0.57
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAGAAAAAAG
Found at i:32584950 original size:44 final size:43
Alignment explanation
Indices: 32584891--32585233 Score: 322
Period size: 44 Copynumber: 7.8 Consensus size: 43
32584881 GATCCAAGAT
* * *
32584891 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
*
32584935 GATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* * *
32584979 GATTTGACATCTCTGTATTGGCAGGGAGCAGATCGAAGACATAACT
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAG--AT-ACA
* * * * *
32585025 GATTTGGCTTTCACGTGT-TT-ACATTGA-AGCAAATCCAAGAT---
1 GATTTGGC-ATCTC-TGTATTGGCA--GAGAGCAGATCGAAGATACA
* ** * *
32585066 GATTTGGCGTCTCTGTATTTTCAGAGAGTAGGTCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
* *
32585110 GATTTGGCATCTCTGTATTAGCAAAGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGAT-ACA
* *
32585154 GATTTGGCATCTCTATATTGGCAGAGAGTAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-CA
*
32585198 GATTTGGCGTCTCTGTATTGGCA-AGGAGCAGATCGA
1 GATTTGGCATCTCTGTATTGGCAGA-GAGCAGATCGA
32585234 GGACATAGCT
Statistics
Matches: 247, Mismatches: 36, Indels: 32
0.78 0.11 0.10
Matches are distributed among these distances:
39 5 0.02
40 15 0.06
41 10 0.04
43 2 0.01
44 179 0.72
45 3 0.01
46 14 0.06
47 15 0.06
48 4 0.02
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATACA
Found at i:32585167 original size:175 final size:175
Alignment explanation
Indices: 32584867--32585192 Score: 519
Period size: 175 Copynumber: 1.9 Consensus size: 175
32584857 CCTTTAAGTA
* *
32584867 TTTACACTGAAGCAGATCCAAGATGATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATG
1 TTTACACTGAAGCAAATCCAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATG
* * * *
32584932 ACAGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAACAGATTTGACATCTCTGTAT
66 ACAGATTTGGCATCTCTGTATTAGCAAAGAGCAGATCGAAGATAACAGATTTGACATCTCTATAT
*
32584997 TGGCAGGGAGCAGATCGAAGACATAACTGATTTGGCTTTCACGTG
131 TGGCAGAGAGCAGATCGAAGACATAACTGATTTGGCTTTCACGTG
* * * *
32585042 TTTACATTGAAGCAAATCCAAGATGATTTGGCGTCTCTGTATTTTCAGAGAGTAGGTCGAAGAT-
1 TTTACACTGAAGCAAATCCAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATG
*
32585106 AGCAGATTTGGCATCTCTGTATTAGCAAAGAGCAGATCGAAGATAACAGATTTGGCATCTCTATA
66 A-CAGATTTGGCATCTCTGTATTAGCAAAGAGCAGATCGAAGATAACAGATTTGACATCTCTATA
*
32585171 TTGGCAGAGAGTAGATCGAAGA
130 TTGGCAGAGAGCAGATCGAAGA
32585193 TAGCAGATTT
Statistics
Matches: 137, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
174 1 0.01
175 136 0.99
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (175 bp):
TTTACACTGAAGCAAATCCAAGATGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATG
ACAGATTTGGCATCTCTGTATTAGCAAAGAGCAGATCGAAGATAACAGATTTGACATCTCTATAT
TGGCAGAGAGCAGATCGAAGACATAACTGATTTGGCTTTCACGTG
Found at i:32585273 original size:219 final size:218
Alignment explanation
Indices: 32584891--32585302 Score: 673
Period size: 219 Copynumber: 1.9 Consensus size: 218
32584881 GATCCAAGAT
* ** * *
32584891 GATTTGGCGTCTCTGTATTGTCAGGGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGTCAAAGAGCAGATCGAAGATAACAGATTTGGCATCTCTATATTGG
*
32584956 CAGAGAGTAGATCGAAGATAACAGATTTGACATCTCTGTATTGGCAGGGAGCAGATCGAAGACAT
66 CAGAGAGTAGATCGAAGATAACAGATTTGACATCTCTGTATTGGCAAGGAGCAGATCGAAGACAT
32585021 AACTGATTTGGCTTTCACGTGTTTACATTGAAGCAAATCCAAGATGATTTGGCGTCTCTGTATTT
131 AACTGATTTGGCTTTCACGTGTTTACATTGAAGCAAAT-CAAGATGATTTGGCGTCTCTGTATTT
32585086 TCAGAGAGTAGGTCGAAGATAGCA
195 TCAGAGAGTAGGTCGAAGATAGCA
32585110 GATTTGGCATCTCTGTATTAG-CAAAGAGCAGATCGAAGATAACAGATTTGGCATCTCTATATTG
1 GATTTGGCATCTCTGTATT-GTCAAAGAGCAGATCGAAGATAACAGATTTGGCATCTCTATATTG
* * * *
32585174 GCAGAGAGTAGATCGAAGATAGCAGATTTGGCGTCTCTGTATTGGCAAGGAGCAGATCGAGGACA
65 GCAGAGAGTAGATCGAAGATAACAGATTTGACATCTCTGTATTGGCAAGGAGCAGATCGAAGACA
* * * *
32585239 TAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATTAAGATGATTTGGTGTCTCTGTATT
130 TAACTGATTTGGCTTTCACGTGTTTACATTGAAGCAAATCAAGATGATTTGGCGTCTCTGTATT
32585303 GGCAGGGAGC
Statistics
Matches: 178, Mismatches: 14, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
218 23 0.13
219 154 0.87
220 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (218 bp):
GATTTGGCATCTCTGTATTGTCAAAGAGCAGATCGAAGATAACAGATTTGGCATCTCTATATTGG
CAGAGAGTAGATCGAAGATAACAGATTTGACATCTCTGTATTGGCAAGGAGCAGATCGAAGACAT
AACTGATTTGGCTTTCACGTGTTTACATTGAAGCAAATCAAGATGATTTGGCGTCTCTGTATTTT
CAGAGAGTAGGTCGAAGATAGCA
Found at i:32585405 original size:87 final size:87
Alignment explanation
Indices: 32585198--32585634 Score: 660
Period size: 87 Copynumber: 5.0 Consensus size: 87
32585188 GAAGATAGCA
* *
32585198 GATTTGGCGTCTCTGTATTGGCAAGGAGCAGATCGAGGACATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
32585263 TACGTTGAAGCAAAT-TAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* *
32585284 GATTTGGTGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACTTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
*
32585349 TACGTTGAAGGAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* * *
32585371 GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAGGACATAGCTGATTTGGTTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
32585436 TACGTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* *
32585458 GATTTGGCGTCTCTATATTGGTAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
1 GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
32585523 TACGTTGAAGCAAATCTAAGAT
66 TACGTTGAAGCAAATCTAAGAT
* * * * * * * *
32585545 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCGTCTCTGTATT-GGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT
* * * *
32585610 TTACATCGAAGCAGATCCAAGAT
65 TTACGTTGAAGCAAATCTAAGAT
32585633 GA
1 GA
32585635 CAGATTTGGC
Statistics
Matches: 319, Mismatches: 30, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
86 75 0.24
87 186 0.58
88 58 0.18
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (87 bp):
GATTTGGCGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTT
TACGTTGAAGCAAATCTAAGAT
Found at i:32585423 original size:219 final size:216
Alignment explanation
Indices: 32584916--32585406 Score: 614
Period size: 219 Copynumber: 2.2 Consensus size: 216
32584906 TATTGTCAGG
* *
32584916 GAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAACAGA
1 GAGCAAATCGAAGAT---AGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAGCAGA
* *
32584981 TTTGACATCTCTGTATTGGCAGGGAGCAGATCGAAGACATAACTGATTTGGCTTTCACGTGTTTA
63 TTTGGCATCTCTGTATTGGCAAGGAGCAGATCGAAGACATAACTGATTTGGCTTTCACGTGTTTA
** * *
32585046 CATTGAAGCAAATCCAAGATGATTTGGCGTCTCTGTATTTTCAGAGAGTAGGTCGAAGATAGCAG
128 CATTGAAGCAAATCCAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAG
*
32585111 ATTTGGCATCTCTGTATTAGCAAA
193 ATTTGGCATCACTGTATTAGCAAA
* *
32585135 GAGCAGATCGAAGATAACAGATTTGGCATCTCTATATTGGCAGAGAGTAGATCGAAGATAGCAGA
1 GAGCAAATCGAAGAT---AGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAGCAGA
* * *
32585200 TTTGGCGTCTCTGTATTGGCAAGGAGCAGATCGAGGACATAGCTGATTTGGCTTTCACGTGTTTA
63 TTTGGCATCTCTGTATTGGCAAGGAGCAGATCGAAGACATAACTGATTTGGCTTTCACGTGTTTA
* * * *
32585265 CGTTGAAGCAAAT-TAAGATGATTTGGTGTCTCTGTATTGGCAGGGAGCAGATCGAAGACATAGC
128 CATTGAAGCAAATCCAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAG--ATAGC
* * **
32585329 TGATTTGGCTTTCACTTGT-TTACGTTGAA
191 AGATTTGGC-ATCAC-TGTATTA-G-CAAA
* * *
32585358 G-G-AAATCTAAGAT-GATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGA
1 GAGCAAATCGAAGATAGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGA
32585407 GGACATAGCT
Statistics
Matches: 240, Mismatches: 26, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
217 33 0.14
218 37 0.15
219 134 0.56
220 13 0.05
221 15 0.06
222 5 0.02
223 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (216 bp):
GAGCAAATCGAAGATAGATTTGGCATCTCTGTATTGGCAGAGAGTAGATCGAAGATAGCAGATTT
GGCATCTCTGTATTGGCAAGGAGCAGATCGAAGACATAACTGATTTGGCTTTCACGTGTTTACAT
TGAAGCAAATCCAAGATGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGCAGATT
TGGCATCACTGTATTAGCAAA
Found at i:32585701 original size:45 final size:45
Alignment explanation
Indices: 32585619--32585818 Score: 262
Period size: 45 Copynumber: 4.5 Consensus size: 45
32585609 TTTACATCGA
*
32585619 AGCAGATCCA-AGATGACAGATTTGGCATCTCTATATTAGACGGGG
1 AGCAGAT-CAGAGATAACAGATTTGGCATCTCTATATTAGACGGGG
* *
32585664 AGCAAATCAGAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCAGAGATAACAGATTTGGCATCTCTATATTAGACGGGG
* * *
32585709 AGCAGAT-TGAAGA-AGCAGATTTGGCGTCTCTATATTAGACGGGG
1 AGCAGATCAG-AGATAACAGATTTGGCATCTCTATATTAGACGGGG
* * *
32585753 AGCAGATCGGAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAGATCAGAGATAACAGATTTGGCATCTCTATATTAGACGGGG
* *
32585798 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAGAGATAACAGAT
32585819 ATCGCCTTCC
Statistics
Matches: 137, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
44 41 0.30
45 96 0.70
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.23
Consensus pattern (45 bp):
AGCAGATCAGAGATAACAGATTTGGCATCTCTATATTAGACGGGG
Found at i:32585742 original size:89 final size:90
Alignment explanation
Indices: 32585619--32585818 Score: 314
Period size: 89 Copynumber: 2.2 Consensus size: 90
32585609 TTTACATCGA
*
32585619 AGCAGATCCAAGAT-GACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCAGAGATAACAG
1 AGCAGATCAAAGATAG-CAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCAGAGATAACAG
32585683 ATTTGGCATCTCTGTATTAGACGGGG
65 ATTTGGCATCTCTGTATTAGACGGGG
** * * *
32585709 AGCAGATTGAAGA-AGCAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCGGAGATAACAGA
1 AGCAGATCAAAGATAGCAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCAGAGATAACAGA
*
32585773 TTTGGCGTCTCTGTATTAGACGGGG
66 TTTGGCATCTCTGTATTAGACGGGG
32585798 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
32585819 ATCGCCTTCC
Statistics
Matches: 100, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
89 81 0.81
90 19 0.19
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.23
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCAGAGATAACAGA
TTTGGCATCTCTGTATTAGACGGGG
Found at i:32585793 original size:134 final size:136
Alignment explanation
Indices: 32585545--32585818 Score: 333
Period size: 134 Copynumber: 2.0 Consensus size: 136
32585535 AATCTAAGAT
* *
32585545 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA-ATAGCAGATCTGACCTTCATATGA
* *
32585610 TTACATCGAAGCAGATCCAAGATGACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCAGA
65 TTACATCGAAGCAGATCCAAGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCAAA
32585675 GATAACA
130 GATAACA
* * * *
32585682 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAG-A-AGCAGATTTGGCGTCTC-TAT-A
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAATAGCAGATCTGACCT-TCATATGA
* * ** * * *
32585743 TTAGA-CGGGGAGCAGATCGGAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCA
65 TTACATC--GAAGCAGATCCAAGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCA
*
32585807 AAGATAGCA
128 AAGATAACA
32585816 GAT
1 GAT
32585819 ATCGCCTTCC
Statistics
Matches: 118, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
132 1 0.01
133 4 0.03
134 72 0.61
135 3 0.03
137 38 0.32
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (136 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAATAGCAGATCTGACCTTCATATGAT
TACATCGAAGCAGATCCAAGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCAAAG
ATAACA
Found at i:32586904 original size:37 final size:37
Alignment explanation
Indices: 32586845--32586951 Score: 178
Period size: 37 Copynumber: 2.9 Consensus size: 37
32586835 AGCTCAGACG
* * *
32586845 AAATCTCCACACGAAATTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
32586882 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
32586919 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
32586952 AAATATATTT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:32587225 original size:48 final size:48
Alignment explanation
Indices: 32587099--32587283 Score: 273
Period size: 48 Copynumber: 3.8 Consensus size: 48
32587089 GCACATCGCC
* *
32587099 TACATATTTCACACTAGCCATTCAACTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTC--A
* *
32587149 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCAGCTTTACCACATATACATATCTCA
* *
32587197 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
*
32587245 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCAGCTTTACCACATATA
32587284 TGCATGTTCA
Statistics
Matches: 125, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
48 82 0.66
49 2 0.02
50 41 0.33
ACGTcount: A:0.32, C:0.26, G:0.05, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCA
Found at i:32587288 original size:98 final size:97
Alignment explanation
Indices: 32587099--32587282 Score: 282
Period size: 98 Copynumber: 1.9 Consensus size: 97
32587089 GCACATCGCC
*
32587099 TACATATTTCACACTAGCCATTCAACTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCAACTTTACCACATATACATATCTCA-ATACATATTTCACATT
32587164 GACCATTCAGCTTTACCACATATGCATATCTCA
65 GACCATTCAGCTTTACCACATATGCATATCTCA
* ** *
32587197 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTC-ATACATATTTCACATT-
1 TACATATTTCACACTAGCCATTCAACTTTACCACATATACATATCTCAATACATATTTCACATTG
*
32587260 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCAGCTTTACCACATAT
32587283 ATGCATGTTC
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.44
98 43 0.54
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCAACTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:32587332 original size:47 final size:47
Alignment explanation
Indices: 32587253--32587446 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
32587243 CATACATATT
* * * **
32587253 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATGTTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
32587300 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
32587347 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * **
32587394 TCACATTGGCCATTCGACCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
32587441 TCACAT
1 TCACAT
32587447 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:32587447 original size:25 final size:25
Alignment explanation
Indices: 32587368--32587447 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
32587358 ATTCGGCCTT
**
32587368 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* *
32587393 ATCACAT-T-GGC-CATTCGACCTT-
1 ATCACATATATGCACATTC-ACATTC
* *
32587415 ATCTCATATATACACATTCACATTC
1 ATCACATATATGCACATTCACATTC
32587440 ATCACATA
1 ATCACATA
32587448 AAATCCTAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 6 0.15
25 19 0.46
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:32590143 original size:37 final size:37
Alignment explanation
Indices: 32590085--32590192 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
32590075 GCTCAGACGA
* * *
32590085 AATCTCCACACGAAGTTATCGGGTCTTACCTGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
32590122 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
32590159 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
32590193 ATATATTTCC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:32590464 original size:48 final size:48
Alignment explanation
Indices: 32590338--32590522 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
32590328 GCACATCGCC
**
32590338 TACATATTTCACACAAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
32590388 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
32590436 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
32590484 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
32590523 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 82 0.66
49 2 0.02
50 40 0.32
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:32590527 original size:98 final size:97
Alignment explanation
Indices: 32590338--32590521 Score: 291
Period size: 98 Copynumber: 1.9 Consensus size: 97
32590328 GCACATCGCC
*
32590338 TACATATTTCACACAAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACAAGCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATT
32590403 GACCATTCAGCTTTACCACATATGCATATCTCA
65 GACCATTCAGCTTTACCACATATGCATATCTCA
** *
32590436 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTC-ATACATATTTCACATT-
1 TACATATTTCACACAAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
*
32590499 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCAGCTTTACCACATAT
32590522 ATGCATGTTC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.44
98 44 0.55
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACAAGCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTG
ACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:32590585 original size:47 final size:47
Alignment explanation
Indices: 32590492--32590685 Score: 271
Period size: 47 Copynumber: 4.1 Consensus size: 47
32590482 CATACATATT
* * * * *
32590492 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* * *
32590539 CCACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* *
32590586 TCACATTGGACATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
* **
32590633 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
32590680 TCACAT
1 TCACAT
32590686 AAAATCCTAA
Statistics
Matches: 129, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 129 1.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCA
Found at i:32590613 original size:94 final size:93
Alignment explanation
Indices: 32590445--32590685 Score: 288
Period size: 94 Copynumber: 2.5 Consensus size: 93
32590435 ATACATATTT
* * * * *
32590445 CACATTAGCCATTCGGCTTTA-CCACATATACATTTCTCATACATAT-TTCACATTAGCCATTCG
1 CACATTGGCCATTCGGCCTTATCCACATATACA-TACTC--ACAT-TCATCACATTAGACATTCG
* *
32590508 GCTTTACCACATATATGCATGTTCATATTCAC
62 GCCTTACCACATATATGCATGTTCACATTCAC
* *
32590540 CACATTGGCCATTCGGCCTTATCACACATATACATGCTCACATTCATCACATTGGACATTCGGCC
1 CACATTGGCCATTCGGCCTTATC-CACATATACATACTCACATTCATCACATTAGACATTCGGCC
* *
32590605 TTATCACATATATGCATGTTCACATTCAT
65 TTACCACATATATGCATGTTCACATTCAC
* * *
32590634 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATC-CACATATACATACTCACATTCATCACAT
32590686 AAAATCCTAA
Statistics
Matches: 128, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
93 1 0.01
94 93 0.73
95 19 0.15
96 5 0.04
97 10 0.08
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (93 bp):
CACATTGGCCATTCGGCCTTATCCACATATACATACTCACATTCATCACATTAGACATTCGGCCT
TACCACATATATGCATGTTCACATTCAC
Found at i:32593251 original size:19 final size:19
Alignment explanation
Indices: 32593227--32593353 Score: 192
Period size: 19 Copynumber: 6.9 Consensus size: 19
32593217 ATAATCTTCA
*
32593227 ATGATATACAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32593246 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32593265 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
32593282 ATGAT-TGCAATCTTAAAT
1 ATGATATGCAATCTTAGAT
*
32593300 ATGATATGCAATCTTAAAT
1 ATGATATGCAATCTTAGAT
32593319 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
32593336 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
32593354 AGATATGTTT
Statistics
Matches: 100, Mismatches: 3, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
17 32 0.32
18 15 0.15
19 53 0.53
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:32593259 original size:36 final size:37
Alignment explanation
Indices: 32593219--32593360 Score: 165
Period size: 36 Copynumber: 4.0 Consensus size: 37
32593209 ATGGAAATAT
*
32593219 AATCTTCA-ATGATATACAATCTTAGATATGATATGC
1 AATCTTAATATGATATACAATCTTAGATATGATATGC
32593255 AATCTTAGATATG--ATACAATCTTAGATATGAT-TGC
1 AATCTTA-ATATGATATACAATCTTAGATATGATATGC
* *
32593290 AATCTTAAATATGATATGCAATCTTAAATATGATA--C
1 AATCTT-AATATGATATACAATCTTAGATATGATATGC
*
32593326 AATCTTAGATATGATATGCAATCTTAGA-A-GATATG
1 AATCTTA-ATATGATATACAATCTTAGATATGATATG
32593361 TTTTTGTAAT
Statistics
Matches: 93, Mismatches: 4, Indels: 18
0.81 0.03 0.16
Matches are distributed among these distances:
34 4 0.04
35 16 0.17
36 52 0.56
37 18 0.19
38 3 0.03
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.36
Consensus pattern (37 bp):
AATCTTAATATGATATACAATCTTAGATATGATATGC
Found at i:32593294 original size:54 final size:55
Alignment explanation
Indices: 32593227--32593360 Score: 220
Period size: 54 Copynumber: 2.5 Consensus size: 55
32593217 ATAATCTTCA
* *
32593227 ATGATATACAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAAATATGATACAATCTTAGAT
*
32593282 ATGAT-TGCAATCTTAAATATGATATGCAATCTTAAATATGATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATATGCAATCTTAAATATGATACAATCTTAGAT
32593336 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATATGCAATCTTAGATATGATATG
32593361 TTTTTGTAAT
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
53 6 0.08
54 52 0.70
55 16 0.22
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.36
Consensus pattern (55 bp):
ATGATATGCAATCTTAGATATGATATGCAATCTTAAATATGATACAATCTTAGAT
Found at i:32595304 original size:86 final size:85
Alignment explanation
Indices: 32595207--32595365 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 85
32595197 TTTCGATATG
* * * *
32595207 TGATTTCGTGTAAGACCAC-GTTTGGGACATTGGCATCGAT-TTGAGATTTACGTGTAAGACAAT
1 TGATTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATT-AGA-TTACATGTAAGACAAC
32595270 GTCTGGGACATCAGCATCGTATT
63 GTCTGGGACATCAGCATCGTATT
* * *
32595293 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATTGATATTTGATTACATGTAAGACCACGTC
1 TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTAGATTACATGTAAGACAACGTC
32595358 TGGGACAT
66 TGGGACAT
32595366 TGGCATTGTA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 25 0.39
86 37 0.58
87 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (85 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATTAGATTACATGTAAGACAACGTC
TGGGACATCAGCATCGTATT
Found at i:32595373 original size:43 final size:43
Alignment explanation
Indices: 32595199--32595371 Score: 190
Period size: 43 Copynumber: 4.0 Consensus size: 43
32595189 CATAGGATTT
* * *
32595199 TCGATATGTGATTTCGTGTAAGACCACGTTTGGGACATTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
* * * **
32595242 TCGAT-TTGAGATTTACGTGTAAGACAATGTCTGGGACATCAGCA
1 TCGATATT-TGA-TTACGTGTAAGACCACGTCTGGGACATTGGCA
* *
32595286 TCG-TATTTGATTTCGTGTAAGACC-CTGTCTGGGACAGTGGCA
1 TCGATATTTGATTACGTGTAAGACCAC-GTCTGGGACATTGGCA
* *
32595328 TTGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
32595371 T
1 T
32595372 TGTACGAGCT
Statistics
Matches: 105, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
42 28 0.27
43 45 0.43
44 32 0.30
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TCGATATTTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
Found at i:32602494 original size:8 final size:8
Alignment explanation
Indices: 32602482--32602514 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
32602472 AATAGGGACT
*
32602482 AAAATGTT
1 AAAATGTG
32602490 AAAATGTG
1 AAAATGTG
32602498 AAAATGTG
1 AAAATGTG
32602506 AAAATGTG
1 AAAATGTG
32602514 A
1 A
32602515 TGGCTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.52, C:0.00, G:0.21, T:0.27
Consensus pattern (8 bp):
AAAATGTG
Found at i:32604683 original size:44 final size:44
Alignment explanation
Indices: 32604620--32604708 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
32604610 TTGAATGCTT
32604620 TACAAGGGACACACAGTCATGTTGCTTGGTTGTGTGTGACCATG
1 TACAAGGGACACACAGTCATGTTGCTTGGTTGTGTGTGACCATG
32604664 TACAAGGGACACACAGTCATGTTGCTTGGTTGTGTGTGACCATG
1 TACAAGGGACACACAGTCATGTTGCTTGGTTGTGTGTGACCATG
32604708 T
1 T
32604709 GTCACACACG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (44 bp):
TACAAGGGACACACAGTCATGTTGCTTGGTTGTGTGTGACCATG
Found at i:32605635 original size:33 final size:33
Alignment explanation
Indices: 32605598--32605704 Score: 106
Period size: 33 Copynumber: 3.2 Consensus size: 33
32605588 ATCCCTCCAG
* *
32605598 CACACCAATGCTCAGAAGAACTAATCCAACCAT
1 CACACCAATGCTCATAAGAGCTAATCCAACCAT
* * * * *
32605631 CACACTAGTGATCTTAAGAGTTAATCCAACCAT
1 CACACCAATGCTCATAAGAGCTAATCCAACCAT
* * * * *
32605664 AACACCAGTGCTTATAAGAGCTAGTCCAACCAA
1 CACACCAATGCTCATAAGAGCTAATCCAACCAT
32605697 CACACCAA
1 CACACCAA
32605705 ACAAAGAGTA
Statistics
Matches: 57, Mismatches: 17, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.40, C:0.30, G:0.11, T:0.19
Consensus pattern (33 bp):
CACACCAATGCTCATAAGAGCTAATCCAACCAT
Found at i:32609864 original size:19 final size:18
Alignment explanation
Indices: 32609833--32609868 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
32609823 TCATGTTATT
32609833 ATTTTTTTAGTTTTTTTA
1 ATTTTTTTAGTTTTTTTA
*
32609851 ATTTCTTTTCGTTTTTTT
1 ATTT-TTTTAGTTTTTTT
32609869 TAAATTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.78
Consensus pattern (18 bp):
ATTTTTTTAGTTTTTTTA
Found at i:32612762 original size:55 final size:55
Alignment explanation
Indices: 32612687--32612798 Score: 179
Period size: 55 Copynumber: 2.0 Consensus size: 55
32612677 GATCTGTAAG
* *
32612687 GGCTAATCAAACCTTTTTTCATGTGACCTGATATTCTAATAGTCTAATCTGAGTA
1 GGCTAATCAAACCCTTTTTCATGTGACCTGATATTCTAATAATCTAATCTGAGTA
* * *
32612742 GGCTAATCAAACCCTTTTTCATGTGATCTGATATTCTGATAATCTGATCTGAGTA
1 GGCTAATCAAACCCTTTTTCATGTGACCTGATATTCTAATAATCTAATCTGAGTA
32612797 GG
1 GG
32612799 AAACTGATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.38
Consensus pattern (55 bp):
GGCTAATCAAACCCTTTTTCATGTGACCTGATATTCTAATAATCTAATCTGAGTA
Found at i:32614940 original size:19 final size:20
Alignment explanation
Indices: 32614912--32614950 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
32614902 AGTGCCTCTG
*
32614912 AATAATGAA-TATGTATAAA
1 AATAACGAATTATGTATAAA
32614931 AATAACGAATTTATGTATAA
1 AATAACGAA-TTATGTATAA
32614951 TGCCCGATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
21 9 0.53
ACGTcount: A:0.54, C:0.03, G:0.10, T:0.33
Consensus pattern (20 bp):
AATAACGAATTATGTATAAA
Found at i:32615058 original size:20 final size:20
Alignment explanation
Indices: 32615027--32615146 Score: 100
Period size: 20 Copynumber: 5.9 Consensus size: 20
32615017 TGTACGGGAT
*
32615027 TGCACTTCGATGCCTCTGTA
1 TGCACTTTGATGCCTCTGTA
* * *
32615047 TACACTTTGATGTCTCTGTT
1 TGCACTTTGATGCCTCTGTA
** *
32615067 TGCACTACGGTGCCTCTG-A
1 TGCACTTTGATGCCTCTGTA
*
32615086 TTGCACATTTG-TGCCTCTGTC
1 -TGCAC-TTTGATGCCTCTGTA
*
32615107 TGCACTTTGGTGCCTCTGTTA
1 TGCACTTTGATGCCTCTG-TA
*
32615128 TGCAACTATGATGCCTCTG
1 TGC-ACTTTGATGCCTCTG
32615147 GTGTGGTGTA
Statistics
Matches: 78, Mismatches: 16, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
19 4 0.05
20 55 0.71
21 6 0.08
22 13 0.17
ACGTcount: A:0.14, C:0.27, G:0.21, T:0.38
Consensus pattern (20 bp):
TGCACTTTGATGCCTCTGTA
Found at i:32615081 original size:40 final size:41
Alignment explanation
Indices: 32615026--32615125 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 41
32615016 TTGTACGGGA
* *
32615026 TTGCACTTCGATGCCTCTGTA-TACAC-TTTGATGTCTCTGT
1 TTGCACTTCGGTGCCTCTGTATTACACATTTG-TGCCTCTGT
* *
32615066 TTGCACTACGGTGCCTCTG-ATTGCACATTTGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTGTATTACACATTTGTGCCTCTGT
* *
32615106 CTGCACTTTGGTGCCTCTGT
1 TTGCACTTCGGTGCCTCTGT
32615126 TATGCAACTA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
39 1 0.02
40 45 0.90
41 4 0.08
ACGTcount: A:0.12, C:0.27, G:0.21, T:0.40
Consensus pattern (41 bp):
TTGCACTTCGGTGCCTCTGTATTACACATTTGTGCCTCTGT
Found at i:32615124 original size:60 final size:62
Alignment explanation
Indices: 32615024--32615146 Score: 153
Period size: 60 Copynumber: 2.0 Consensus size: 62
32615014 GCTTGTACGG
* *
32615024 GATTGCACTTCGATGCCTCTGTATACACTTTGATGTCTCTGTT-TGC-ACTACGGTGCCTCT
1 GATTGCACTTCGATGCCTCTGTATACACTTTGATGCCTCTGTTATGCAACTACGATGCCTCT
* * * * *
32615084 GATTGCACATTTG-TGCCTCTGTCTGCACTTTGGTGCCTCTGTTATGCAACTATGATGCCTCT
1 GATTGCAC-TTCGATGCCTCTGTATACACTTTGATGCCTCTGTTATGCAACTACGATGCCTCT
32615146 G
1 G
32615147 GTGTGGTGTA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
60 34 0.64
61 6 0.11
62 13 0.25
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.38
Consensus pattern (62 bp):
GATTGCACTTCGATGCCTCTGTATACACTTTGATGCCTCTGTTATGCAACTACGATGCCTCT
Found at i:32618830 original size:37 final size:37
Alignment explanation
Indices: 32618789--32618866 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 37
32618779 TAAGCATTTT
* *
32618789 TTCTCCATGTCTTTCA-GTTTGA-AAACTAAGACGTTTC
1 TTCTCC-TGTCTTTCATG-CTGAGAAACTAAGACGCTTC
* *
32618826 TTCTCCTTTTTTTCATGCTGAGAAACTAAGACGCTTC
1 TTCTCCTGTCTTTCATGCTGAGAAACTAAGACGCTTC
32618863 TTCT
1 TTCT
32618867 TCTTTTCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
36 10 0.29
37 25 0.71
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (37 bp):
TTCTCCTGTCTTTCATGCTGAGAAACTAAGACGCTTC
Found at i:32618872 original size:37 final size:38
Alignment explanation
Indices: 32618811--32618882 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 38
32618801 TTCAGTTTGA
*
32618811 AAACTAAGACGTTTCTTCTCCTTTT-TTTCATGCTGAG
1 AAACTAAGACGCTTCTTCTCCTTTTCTTTCATGCTGAG
* *
32618848 AAACTAAGACGCTTCTTCTTCTTTTCTTTTATGCT
1 AAACTAAGACGCTTCTTCTCCTTTTCTTTCATGCT
32618883 AAAAATTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
37 23 0.74
38 8 0.26
ACGTcount: A:0.21, C:0.22, G:0.11, T:0.46
Consensus pattern (38 bp):
AAACTAAGACGCTTCTTCTCCTTTTCTTTCATGCTGAG
Found at i:32619914 original size:22 final size:19
Alignment explanation
Indices: 32619887--32619933 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 19
32619877 AAAGTCACAT
32619887 GCCCGTGTGGACACAGGGACAC
1 GCCCGTGT-G-CACA-GGACAC
*
32619909 GCCCGTGTGCCCAGGACAC
1 GCCCGTGTGCACAGGACAC
32619928 GCCCGT
1 GCCCGT
32619934 ATCCTTAGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 12 0.50
20 3 0.12
21 1 0.04
22 8 0.33
ACGTcount: A:0.17, C:0.38, G:0.34, T:0.11
Consensus pattern (19 bp):
GCCCGTGTGCACAGGACAC
Found at i:32620106 original size:36 final size:36
Alignment explanation
Indices: 32620059--32620130 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
32620049 TCGTGTCTCA
32620059 GCCTGTGTGGCCAACACTTAGGCTATTTTCCAAGCC
1 GCCTGTGTGGCCAACACTTAGGCTATTTTCCAAGCC
32620095 GCCTGTGTGGCCAACACTTAGGCTATTTTCCAAGCC
1 GCCTGTGTGGCCAACACTTAGGCTATTTTCCAAGCC
32620131 TTTATGTTAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.19, C:0.31, G:0.22, T:0.28
Consensus pattern (36 bp):
GCCTGTGTGGCCAACACTTAGGCTATTTTCCAAGCC
Found at i:32621947 original size:49 final size:49
Alignment explanation
Indices: 32621886--32622151 Score: 160
Period size: 49 Copynumber: 5.6 Consensus size: 49
32621876 ACATCAAATT
*
32621886 CGATGCCATGTCCCAAACAGGTCTTACACTGACTTTCATATATCGAGGC
1 CGATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGAGGC
* * * * *
32621935 CGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCG-GTGT
1 CGATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGAG-GC
* * * * * * * **
32621984 CGATGCCATATGCCAGATAGGTCTTACACTAACACACA-A-A---AAAC
1 CGATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGAGGC
** * * * *
32622028 TAACGCCATGTCCCAGACAGGTCTTACACT-AGCT-TGTATATCTCGAGGC
1 CGATGCCATGTCCCAAACAGGTCTTACACTGA-CTCT-CATATATCGAGGC
* * * * *
32622077 CGATG-CATGTCCCAGACATGTCTTACATTGGCTCTCATA-AT-GTGGC
1 CGATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGAGGC
* * *
32622123 CGATG-CATGTCCCAGACATGCCTTACACT
1 CGATGCCATGTCCCAAACAGGTCTTACACT
32622152 AGCACACATA
Statistics
Matches: 165, Mismatches: 41, Indels: 25
0.71 0.18 0.11
Matches are distributed among these distances:
43 1 0.01
44 26 0.16
45 1 0.01
46 31 0.19
47 2 0.01
48 28 0.17
49 76 0.46
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (49 bp):
CGATGCCATGTCCCAAACAGGTCTTACACTGACTCTCATATATCGAGGC
Found at i:32622094 original size:48 final size:46
Alignment explanation
Indices: 32622034--32622154 Score: 145
Period size: 46 Copynumber: 2.6 Consensus size: 46
32622024 AAACTAACGC
* * *
32622034 CATGTCCCAGACAGGTCTTACACTAGCT-TGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CATA-AT-GAGGCCGATG
* * *
32622082 CATGTCCCAGACATGTCTTACATTGGCTCTCATAATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGAGGCCGATG
*
32622128 CATGTCCCAGACATGCCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
32622155 ACACATATCA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 33 0.52
47 1 0.02
48 28 0.44
49 1 0.02
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGAGGCCGATG
Found at i:32628021 original size:21 final size:20
Alignment explanation
Indices: 32627997--32628054 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
32627987 AAATAAAACA
*
32627997 CAAAAAAATATAAAAAATTGT
1 CAAAAAAAT-TAAAAAATTCT
* *
32628018 CAAACAAATTCAAAAAAATCT
1 CAAAAAAATT-AAAAAATTCT
32628039 C-AAAAAATTAAAAAAT
1 CAAAAAAATTAAAAAAT
32628055 ATAAAAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
19 6 0.19
20 8 0.26
21 17 0.55
ACGTcount: A:0.67, C:0.10, G:0.02, T:0.21
Consensus pattern (20 bp):
CAAAAAAATTAAAAAATTCT
Found at i:32632254 original size:24 final size:23
Alignment explanation
Indices: 32632210--32632255 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
32632200 TGCATATAAC
* *
32632210 ATGACAAAAGAAAAATGGCAATG
1 ATGACAAAACAAAAATAGCAATG
*
32632233 ATGACGAAAACAATAATAGCAAT
1 ATGAC-AAAACAAAAATAGCAAT
32632256 AGTATAAAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.57, C:0.11, G:0.17, T:0.15
Consensus pattern (23 bp):
ATGACAAAACAAAAATAGCAATG
Found at i:32632320 original size:9 final size:9
Alignment explanation
Indices: 32632306--32632331 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32632296 ATAATAATGG
32632306 AAACAAAAC
1 AAACAAAAC
32632315 AAACAAAAC
1 AAACAAAAC
32632324 AAACAAAA
1 AAACAAAA
32632332 ATATATATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (9 bp):
AAACAAAAC
Found at i:32634816 original size:43 final size:42
Alignment explanation
Indices: 32634720--32634828 Score: 128
Period size: 43 Copynumber: 2.6 Consensus size: 42
32634710 TTAAAGCTCG
* *
32634720 ACCTGTTTCCCTACTGCTTAGGGGTTTAGATATGTAAATTCA
1 ACCTGTTACCCTACTGCTTAGGGGTTTAGATATGAAAATTCA
* * **
32634762 ACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTTGAAAATTTG
1 ACCTGTTACCCTACTGCTTAGGGGTTT-AGATATGAAAATTCA
* * *
32634805 GCTTGTTACCCTATTGCTTAGGGG
1 ACCTGTTACCCTACTGCTTAGGGG
32634829 GTTGAAGCCC
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
42 26 0.46
43 31 0.54
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (42 bp):
ACCTGTTACCCTACTGCTTAGGGGTTTAGATATGAAAATTCA
Found at i:32647008 original size:9 final size:9
Alignment explanation
Indices: 32646996--32647021 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32646986 ATAATAATGG
32646996 AAACAAAAC
1 AAACAAAAC
32647005 AAACAAAAC
1 AAACAAAAC
32647014 AAACAAAA
1 AAACAAAA
32647022 AAATATATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.19, G:0.00, T:0.00
Consensus pattern (9 bp):
AAACAAAAC
Found at i:32647577 original size:42 final size:36
Alignment explanation
Indices: 32647493--32647572 Score: 144
Period size: 36 Copynumber: 2.2 Consensus size: 36
32647483 AAAAGATTAC
32647493 TAAATAATACTATAAACATGCTAATGATAACAATGA
1 TAAATAATACTATAAACATGCTAATGATAACAATGA
32647529 TAAATAATACTATAAACATGCTAATGATAACAATGA
1 TAAATAATACTATAAACATGCTAATGATAACAATGA
*
32647565 -GAATAATA
1 TAAATAATA
32647573 AATAAAATGA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
35 7 0.16
36 36 0.84
ACGTcount: A:0.54, C:0.10, G:0.09, T:0.28
Consensus pattern (36 bp):
TAAATAATACTATAAACATGCTAATGATAACAATGA
Found at i:32649375 original size:42 final size:43
Alignment explanation
Indices: 32649306--32649403 Score: 137
Period size: 42 Copynumber: 2.3 Consensus size: 43
32649296 TGTTGTACAT
*
32649306 AAACGCCGCTAAAGAACATGACTTTTAGCAGCG-CTTTCAGGA-
1 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCCTTT-AGGAC
* * *
32649348 AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCCTTTTGGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCCTTTAGGAC
32649391 AAACGCCGCTAAA
1 AAACGCCGCTAAA
32649404 AATATATGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 33 0.66
43 17 0.34
ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCCTTTAGGAC
Found at i:32649440 original size:44 final size:44
Alignment explanation
Indices: 32649383--32649474 Score: 157
Period size: 44 Copynumber: 2.1 Consensus size: 44
32649373 TAGCGGCGCC
*
32649383 TTTTGGACAAACGCCGCTAAAAATATATGTTCTTTTACGGTATT
1 TTTTGGACAAACGCCGCTAAAAATATATGTTCTTTTACGGCATT
* *
32649427 TTTTGTACAAACGCCGCTAAAAATATATGTTCTTTTGCGGCATT
1 TTTTGGACAAACGCCGCTAAAAATATATGTTCTTTTACGGCATT
32649471 TTTT
1 TTTT
32649475 ATGAAAACGC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.41
Consensus pattern (44 bp):
TTTTGGACAAACGCCGCTAAAAATATATGTTCTTTTACGGCATT
Found at i:32649483 original size:44 final size:44
Alignment explanation
Indices: 32649389--32649490 Score: 152
Period size: 44 Copynumber: 2.3 Consensus size: 44
32649379 CGCCTTTTGG
* *
32649389 ACAAACGCCGCTAAAAATATATGTTCTTTTACGGTATTTTTTGT
1 ACAAACGCCGCTAAAAATATATGTTCTTTTACGGCATTTTTTAT
*
32649433 ACAAACGCCGCTAAAAATATATGTTCTTTTGCGGCATTTTTTAT
1 ACAAACGCCGCTAAAAATATATGTTCTTTTACGGCATTTTTTAT
*
32649477 GA-AAACGCCACTAA
1 -ACAAACGCCGCTAA
32649491 TTTTAGCATA
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
44 52 0.98
45 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (44 bp):
ACAAACGCCGCTAAAAATATATGTTCTTTTACGGCATTTTTTAT
Found at i:32649594 original size:47 final size:47
Alignment explanation
Indices: 32649540--32649632 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
32649530 ATCCTTCCTA
*
32649540 CAACATCAAATCCAACCAATAACAGCAAATCTAAATGATACTTCAAG
1 CAACATCAAATCCAACCAATAACAGCAAATCTAAATGATAATTCAAG
32649587 CAACATCAAATCCAACCAATAACAGCAAATCTAAATGATAATTCAA
1 CAACATCAAATCCAACCAATAACAGCAAATCTAAATGATAATTCAA
32649633 AAATTCAATG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.51, C:0.25, G:0.05, T:0.19
Consensus pattern (47 bp):
CAACATCAAATCCAACCAATAACAGCAAATCTAAATGATAATTCAAG
Found at i:32650267 original size:13 final size:14
Alignment explanation
Indices: 32650241--32650269 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32650231 ACTAACGACG
32650241 AATTAAACCATTAT
1 AATTAAACCATTAT
32650255 AATTAAA-CATTAT
1 AATTAAACCATTAT
32650268 AA
1 AA
32650270 ATATTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:32653684 original size:88 final size:84
Alignment explanation
Indices: 32653530--32653929 Score: 354
Period size: 84 Copynumber: 4.8 Consensus size: 84
32653520 TGCGGCGTTT
* * * *
32653530 ATCCCTTAAATCTCCAATTAAAACGACGACGTTTTCATTAAACTATTATGTTTTTTGCGGCTTTT
1 ATCCCTTAAATCTCCAATTAAAACGATGCCATTTTCATTAAACTATTATGTTTTTTGCGGCATTT
32653595 TTAAAAAAATTTAAAAACGCCTA
66 TTAAAAAAA---AAAAACG-CTA
* *
32653618 ATCCCCTAAATCTCCAATTAAAACGATGCCATTTTCATTAAACTATTATGTTTTTTGCGGCGTTT
1 ATCCCTTAAATCTCCAATTAAAACGATGCCATTTTCATTAAACTATTATGTTTTTTGCGGCATTT
** * ***
32653683 TT-TCAAGAAACGCCGCTA
66 TTAAAAAAAAAAAACGCTA
* * * * *
32653701 ATCCCTTAAATCTCCAACTAAAACGATGCCATTTTCGTTAAACTACTAGGTTTTTTTGAGGCATT
1 ATCCCTTAAATCTCCAATTAAAACGATGCCATTTTCATTAAACTATTATG-TTTTTTGCGGCATT
***
32653766 TTT-------AACGCCGCTA
65 TTTAAAAAAAAAAAACGCTA
* * * * *
32653779 AT-CCTCTAAATCTCCAACTAAAACGATGCCGCTTTT-GTTAAACTATTATG-TTTTTGCAGCGT
1 ATCCCT-TAAATCTCCAATTAAAACGATGCC-ATTTTCATTAAACTATTATGTTTTTTGCGGC-A
* *** *
32653841 TTTTTATAAAAAAACGCCACTA
63 TTTTTAAAAAAAAAAAACGCTA
* * *
32653863 ATCCCCTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAACTATTATGTTTTTTGCGGCATTT
1 ATCCCTTAAATCTCCAATTAAAACGATGCCATTTTCATTAAACTATTATGTTTTTTGCGGCATTT
32653928 TT
66 TT
32653930 CAAGAAACGC
Statistics
Matches: 267, Mismatches: 31, Indels: 32
0.81 0.09 0.10
Matches are distributed among these distances:
76 8 0.03
77 8 0.03
78 48 0.18
79 4 0.01
83 52 0.19
84 71 0.27
85 11 0.04
87 3 0.01
88 62 0.23
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.37
Consensus pattern (84 bp):
ATCCCTTAAATCTCCAATTAAAACGATGCCATTTTCATTAAACTATTATGTTTTTTGCGGCATTT
TTAAAAAAAAAAAACGCTA
Found at i:32653792 original size:161 final size:161
Alignment explanation
Indices: 32653615--32653929 Score: 456
Period size: 161 Copynumber: 2.0 Consensus size: 161
32653605 TTAAAAACGC
* *
32653615 CTAATCCCCTAAATCTCCAATTAAAACGATGCC-ATTTTCATTAAACTATTATGTTTTTTGCGGC
1 CTAATCCCCTAAATCTCCAACTAAAACGATGCCGATTTT-ATTAAACTATTATG-TTTTTGCAGC
* * * * *
32653679 G-TTTTT-TCAAGAAACGCCGCTAATCCCTTAAATCTCCAACTAAAACGATGCCATTTTCGTTAA
64 GTTTTTTATAAAAAAACGCCACTAATCCCCTAAATCTCCAACTAAAACGACGCCATTTTCGTTAA
32653742 ACTACTAGGTTTTTTTGAGGCATTTTTAACGCCG
129 ACTACTAGG-TTTTTTGAGGCATTTTTAACGCCG
* * *
32653776 CTAATCCTCTAAATCTCCAACTAAAACGATGCCGCTTTTGTTAAACTATTATGTTTTTGCAGCGT
1 CTAATCCCCTAAATCTCCAACTAAAACGATGCCGATTTTATTAAACTATTATGTTTTTGCAGCGT
*
32653841 TTTTTATAAAAAAACGCCACTAATCCCCTAAATCTCCAATTAAAACGACGCCATTTTCGTTAAAC
66 TTTTTATAAAAAAACGCCACTAATCCCCTAAATCTCCAACTAAAACGACGCCATTTTCGTTAAAC
* * *
32653906 TATTATGTTTTTTGCGGCATTTTT
131 TACTAGGTTTTTTGAGGCATTTTT
32653930 CAAGAAACGC
Statistics
Matches: 137, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
160 10 0.07
161 65 0.47
162 62 0.45
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (161 bp):
CTAATCCCCTAAATCTCCAACTAAAACGATGCCGATTTTATTAAACTATTATGTTTTTGCAGCGT
TTTTTATAAAAAAACGCCACTAATCCCCTAAATCTCCAACTAAAACGACGCCATTTTCGTTAAAC
TACTAGGTTTTTTGAGGCATTTTTAACGCCG
Found at i:32653929 original size:84 final size:82
Alignment explanation
Indices: 32653607--32653947 Score: 312
Period size: 83 Copynumber: 4.2 Consensus size: 82
32653597 AAAAAAATTT
* * *
32653607 AAAAACG-C-CTAATCCCCTAAATCTCCAATTAAAACGATGCC-ATTTTCATTAAACTATTATGT
1 AAAAACGCCACTAATCCCCTAAATCTCCAACTAAAACGACGCCGATTTT-GTTAAACTATTATG-
* * *
32653669 TTTTTGCGGCGTTTTTTCA
64 TTTTTGCAGCGATTTTTAA
* * * * *
32653688 AGAAACGCCGCTAATCCCTTAAATCTCCAACTAAAACGATGCC-ATTTTCGTTAAACTACTAGGT
1 AAAAACGCCACTAATCCCCTAAATCTCCAACTAAAACGACGCCGATTTT-GTTAAACTATTA--T
*
32653752 TTTTTTG-AG-GCATTTTT--
63 GTTTTTGCAGCG-ATTTTTAA
* * * *
32653769 ---AACGCCGCTAATCCTCTAAATCTCCAACTAAAACGATGCCGCTTTTGTTAAACTATTATGTT
1 AAAAACGCCACTAATCCCCTAAATCTCCAACTAAAACGACGCCGATTTTGTTAAACTATTATGTT
*
32653831 TTTGCAGCGTTTTTTATAA
66 TTTGCAGCG-ATTTT-TAA
*
32653850 AAAAACGCCACTAATCCCCTAAATCTCCAATTAAAACGACGCC-ATTTTCGTTAAACTATTATGT
1 AAAAACGCCACTAATCCCCTAAATCTCCAACTAAAACGACGCCGATTTT-GTTAAACTATTATG-
* *
32653914 TTTTTGCGGC-ATTTTTCA
64 TTTTTGCAGCGATTTTTAA
*
32653932 AGAAACGCCACTAATC
1 AAAAACGCCACTAATC
32653948 TCTTAGTTTT
Statistics
Matches: 220, Mismatches: 24, Indels: 31
0.80 0.09 0.11
Matches are distributed among these distances:
76 7 0.03
77 2 0.01
78 54 0.25
79 5 0.02
81 6 0.03
82 19 0.09
83 61 0.28
84 56 0.25
85 10 0.05
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (82 bp):
AAAAACGCCACTAATCCCCTAAATCTCCAACTAAAACGACGCCGATTTTGTTAAACTATTATGTT
TTTGCAGCGATTTTTAA
Found at i:32654122 original size:19 final size:18
Alignment explanation
Indices: 32654098--32654133 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
32654088 TGATTTTAAT
32654098 TATTAATACTAATGATAAA
1 TATTAATA-TAATGATAAA
*
32654117 TATTAATATGATGATAA
1 TATTAATATAATGATAA
32654134 GTTATAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.50, C:0.03, G:0.08, T:0.39
Consensus pattern (18 bp):
TATTAATATAATGATAAA
Found at i:32654573 original size:7 final size:7
Alignment explanation
Indices: 32654549--32654655 Score: 56
Period size: 7 Copynumber: 15.0 Consensus size: 7
32654539 CCCTATCTCA
*
32654549 TAAACAC
1 TAAACCC
**
32654556 TAAACTA
1 TAAACCC
32654563 TAAACCC
1 TAAACCC
*
32654570 TAAACCT
1 TAAACCC
*
32654577 TGAACCC
1 TAAACCC
*
32654584 TTAACCCC
1 -TAAACCC
32654592 T-AACCC
1 TAAACCC
* *
32654598 TTAGACTC
1 -TAAACCC
*
32654606 TAAACCA
1 TAAACCC
32654613 TAAACCTC
1 TAAACC-C
32654621 T-AACCC
1 TAAACCC
*
32654627 TTAACCCC
1 -TAAACCC
*
32654635 TAACCCC
1 TAAACCC
*
32654642 TAAACCT
1 TAAACCC
32654649 TAAACCC
1 TAAACCC
32654656 CAACTATTAA
Statistics
Matches: 74, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
6 5 0.07
7 56 0.76
8 13 0.18
ACGTcount: A:0.38, C:0.38, G:0.02, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:32654621 original size:15 final size:15
Alignment explanation
Indices: 32654518--32654655 Score: 85
Period size: 14 Copynumber: 9.6 Consensus size: 15
32654508 TACTAATTAA
32654518 TCTAAACCCTAAACC
1 TCTAAACCCTAAACC
** *
32654533 TCTAGCCCCT--ATC
1 TCTAAACCCTAAACC
*
32654546 TCATAAACACTAAA-C
1 TC-TAAACCCTAAACC
*
32654561 TATAAACCCTAAACC
1 TCTAAACCCTAAACC
* *
32654576 T-TGAACCCTTAACC
1 TCTAAACCCTAAACC
* *
32654590 CCT-AACCCTTAGA-C
1 TCTAAACCC-TAAACC
*
32654604 TCTAAACCATAAACC
1 TCTAAACCCTAAACC
*
32654619 TCT-AACCCTTAACC
1 TCTAAACCCTAAACC
* *
32654633 CCTAACCCCTAAACC
1 TCTAAACCCTAAACC
32654648 T-TAAACCC
1 TCTAAACCC
32654656 CAACTATTAA
Statistics
Matches: 91, Mismatches: 23, Indels: 19
0.68 0.17 0.14
Matches are distributed among these distances:
13 4 0.04
14 54 0.59
15 32 0.35
16 1 0.01
ACGTcount: A:0.36, C:0.39, G:0.02, T:0.22
Consensus pattern (15 bp):
TCTAAACCCTAAACC
Found at i:32654637 original size:29 final size:29
Alignment explanation
Indices: 32654586--32654648 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
32654576 TTGAACCCTT
* *
32654586 AACCCCTAACCCTTAGACTCTAAACCATA
1 AACCTCTAACCCTTAGACCCTAAACCATA
* *
32654615 AACCTCTAACCCTTA-ACCCCTAACCCCTA
1 AACCTCTAACCCTTAGA-CCCTAAACCATA
32654644 AACCT
1 AACCT
32654649 TAAACCCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 1 0.03
29 28 0.97
ACGTcount: A:0.35, C:0.43, G:0.02, T:0.21
Consensus pattern (29 bp):
AACCTCTAACCCTTAGACCCTAAACCATA
Found at i:32654653 original size:43 final size:43
Alignment explanation
Indices: 32654555--32654654 Score: 132
Period size: 43 Copynumber: 2.3 Consensus size: 43
32654545 CTCATAAACA
*
32654555 CTAAACTATAAACCCTAAACCTTGAACCCTTAACCCCTAACCC
1 CTAAACTATAAACCATAAACCTTGAACCCTTAACCCCTAACCC
* * *
32654598 TTAGACTCTAAACCATAAACCTCT-AACCCTTAACCCCTAACCC
1 CTAAACTATAAACCATAAACCT-TGAACCCTTAACCCCTAACCC
32654641 CTAAACCT-TAAACC
1 CTAAA-CTATAAACC
32654655 CCAACTATTA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
43 46 0.94
44 3 0.06
ACGTcount: A:0.37, C:0.39, G:0.02, T:0.22
Consensus pattern (43 bp):
CTAAACTATAAACCATAAACCTTGAACCCTTAACCCCTAACCC
Found at i:32654732 original size:7 final size:7
Alignment explanation
Indices: 32654718--32654765 Score: 51
Period size: 7 Copynumber: 6.9 Consensus size: 7
32654708 AATAGTAACT
32654718 CCTAAAC
1 CCTAAAC
*
32654725 CTTAAAC
1 CCTAAAC
*
32654732 CCTAAAT
1 CCTAAAC
* *
32654739 CATATAC
1 CCTAAAC
32654746 CCTAAAC
1 CCTAAAC
*
32654753 CATAAAC
1 CCTAAAC
32654760 CCTAAA
1 CCTAAA
32654766 TTATAATGAT
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (7 bp):
CCTAAAC
Found at i:32654735 original size:14 final size:14
Alignment explanation
Indices: 32654718--32654765 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
32654708 AATAGTAACT
*
32654718 CCTAAACCTTAAAC
1 CCTAAACCATAAAC
* *
32654732 CCTAAATCATATAC
1 CCTAAACCATAAAC
32654746 CCTAAACCATAAAC
1 CCTAAACCATAAAC
32654760 CCTAAA
1 CCTAAA
32654766 TTATAATGAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (14 bp):
CCTAAACCATAAAC
Found at i:32654771 original size:14 final size:14
Alignment explanation
Indices: 32654727--32654771 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
32654717 TCCTAAACCT
32654727 TAAACCCTAAATCA
1 TAAACCCTAAATCA
* *
32654741 TATACCCTAAACCA
1 TAAACCCTAAATCA
*
32654755 TAAACCCTAAATTA
1 TAAACCCTAAATCA
32654769 TAA
1 TAA
32654772 TGATAATTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (14 bp):
TAAACCCTAAATCA
Found at i:32655132 original size:40 final size:42
Alignment explanation
Indices: 32655036--32655132 Score: 103
Period size: 41 Copynumber: 2.4 Consensus size: 42
32655026 GCGCTTTTTG
* * **
32655036 AAAAA-CGCCGCTAAT-ACTCGATATATAGCGGGGTTTTTCA
1 AAAAAGCGCCGCTAATGACTCAATATATAGCAGCATTTTTCA
* *
32655076 AAAAAGCGTCGGTAATGA-TCAATATATAGCAGCATTTTT-A
1 AAAAAGCGCCGCTAATGACTCAATATATAGCAGCATTTTTCA
*
32655116 TAAAAGCGCCGCTAATG
1 AAAAAGCGCCGCTAATG
32655133 GTGGACCTCT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
40 20 0.43
41 25 0.54
42 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.27
Consensus pattern (42 bp):
AAAAAGCGCCGCTAATGACTCAATATATAGCAGCATTTTTCA
Found at i:32655245 original size:40 final size:39
Alignment explanation
Indices: 32655024--32655239 Score: 139
Period size: 40 Copynumber: 5.4 Consensus size: 39
32655014 TACTTTTTTA
*
32655024 CGGCGCTTTTTGAAAAA-CGCCGCTAATACTCGATATATAG
1 CGGCG-TTTTT-AAAAAGCGCCGCTAATACTCGATCTATAG
* * * * *
32655064 CGGGGTTTTTCAAAAAAGCGTCGGTAATGA-TCAATATATAG
1 CGGCGTTTTT--AAAAAGCGCCGCTAAT-ACTCGATCTATAG
* * ** * * *
32655105 CAGCATTTTTATAAAAGCGCCGCTAATGGTGGACCTCTAG
1 CGGCGTTTTTA-AAAAGCGCCGCTAATACTCGATCTATAG
* * * *
32655145 TGGCATTTTTAAAAATGCGCCGCTAATGCTCGATCTTTAG
1 CGGCGTTTTTAAAAA-GCGCCGCTAATACTCGATCTATAG
*** * * *
32655185 TTTCGTTCTTCAATAAGCACCGCTAATACTCGATCTATAG
1 CGGCGTT-TTTAAAAAGCGCCGCTAATACTCGATCTATAG
32655225 CGGCGTTTTTAAAAA
1 CGGCGTTTTTAAAAA
32655240 TGCACCACTA
Statistics
Matches: 134, Mismatches: 35, Indels: 15
0.73 0.19 0.08
Matches are distributed among these distances:
39 16 0.12
40 86 0.64
41 31 0.23
42 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (39 bp):
CGGCGTTTTTAAAAAGCGCCGCTAATACTCGATCTATAG
Found at i:32655614 original size:20 final size:21
Alignment explanation
Indices: 32655585--32655631 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
32655575 ATACAATTAC
* *
32655585 ATAATTTTAA-ATTCTAAAAA
1 ATAATATTAATATTATAAAAA
32655605 ATAATATTAATTATTATAAAAA
1 ATAATATTAA-TATTATAAAAA
32655627 ATAAT
1 ATAAT
32655632 CAATAATAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 9 0.39
22 14 0.61
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
ATAATATTAATATTATAAAAA
Found at i:32655917 original size:45 final size:45
Alignment explanation
Indices: 32655833--32655918 Score: 109
Period size: 45 Copynumber: 1.9 Consensus size: 45
32655823 ATTGCTCAAG
* * * *
32655833 TATAAATAATTAATAATAAATGCTATATAGTTTAGTTAAATTTAA
1 TATAAATAATTAATAATAAATACTATATAATTCAATTAAATTTAA
** *
32655878 TATAAATAATTTGTAATAAATACTATGTAATTCAATTAAAT
1 TATAAATAATTAATAATAAATACTATATAATTCAATTAAAT
32655919 ATTTCATAGG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 34 1.00
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (45 bp):
TATAAATAATTAATAATAAATACTATATAATTCAATTAAATTTAA
Found at i:32657022 original size:12 final size:12
Alignment explanation
Indices: 32657005--32657031 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32656995 TTAACAAAGG
32657005 AACTAAACCAAA
1 AACTAAACCAAA
32657017 AACTAAACCAAA
1 AACTAAACCAAA
32657029 AAC
1 AAC
32657032 ATGAGTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.67, C:0.26, G:0.00, T:0.07
Consensus pattern (12 bp):
AACTAAACCAAA
Found at i:32661907 original size:30 final size:30
Alignment explanation
Indices: 32661873--32661952 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 30
32661863 CGTTTAATAG
*
32661873 AGCCACAAAGGCTTTCACATATCTAATTAC
1 AGCCACAAAGGCTTTCACATATCTAATAAC
** *
32661903 AGCCACAAATACTTTCACATATCTAATAAT
1 AGCCACAAAGGCTTTCACATATCTAATAAC
* *
32661933 AGCCATAAAGGTTTTCACAT
1 AGCCACAAAGGCTTTCACAT
32661953 TTCGATAAAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.29
Consensus pattern (30 bp):
AGCCACAAAGGCTTTCACATATCTAATAAC
Found at i:32662924 original size:34 final size:34
Alignment explanation
Indices: 32662881--32662947 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
32662871 ATAGGCAGAG
* *
32662881 AATACTTCCTGAAGAAGTAATGTGCAATTCCCAA
1 AATACTTCCTGAAGAAGTAATGCGCAACTCCCAA
*
32662915 AATACTTCCTGATGAAGTAATGCGCAACTCCCA
1 AATACTTCCTGAAGAAGTAATGCGCAACTCCCA
32662948 GCACTTATCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (34 bp):
AATACTTCCTGAAGAAGTAATGCGCAACTCCCAA
Found at i:32670001 original size:19 final size:19
Alignment explanation
Indices: 32669979--32670046 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 19
32669969 ATTTATACAT
32669979 TTTTAACAATTTT-AATAAA
1 TTTTAA-AATTTTAAATAAA
*
32669998 TTTT-AAATTTTAAAATAAT
1 TTTTAAAATTTT-AAATAAA
**
32670017 TTTTAAAATTTTTTA-AAA
1 TTTTAAAATTTTAAATAAA
32670035 TTTTGAAAATTT
1 TTTT-AAAATTT
32670047 AAAAATTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
17 6 0.15
18 7 0.17
19 21 0.51
20 7 0.17
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (19 bp):
TTTTAAAATTTTAAATAAA
Found at i:32670022 original size:12 final size:10
Alignment explanation
Indices: 32670005--32670038 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
32669995 AAATTTTAAA
32670005 TTTTAAAATAAT
1 TTTTAAAAT--T
32670017 TTTTAAAATT
1 TTTTAAAATT
32670027 TTTTAAAATT
1 TTTTAAAATT
32670037 TT
1 TT
32670039 GAAAATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 13 0.59
12 9 0.41
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:32670028 original size:9 final size:9
Alignment explanation
Indices: 32669919--32670046 Score: 57
Period size: 9 Copynumber: 13.6 Consensus size: 9
32669909 GTATTTAATT
32669919 AATTTTTAA
1 AATTTTTAA
*
32669928 AAATTTT-A
1 AATTTTTAA
32669936 AATTTTTAA
1 AATTTTTAA
**
32669945 ATATTAATAAAA
1 A-ATT--TTTAA
*
32669957 ATATTTTTTAT
1 A-A-TTTTTAA
*
32669968 AATTTAT-A
1 AATTTTTAA
*
32669976 CATTTTTAA
1 AATTTTTAA
32669985 CAA-TTTTAA
1 -AATTTTTAA
*
32669994 TAAATTTT-A
1 -AATTTTTAA
*
32670003 AATTTTAAAA
1 AATTTT-TAA
32670013 TAATTTTTAA
1 -AATTTTTAA
32670023 AATTTTTTAA
1 AA-TTTTTAA
*
32670033 AATTTTGAA
1 AATTTTTAA
32670042 AATTT
1 AATTT
32670047 AAAAATTAAT
Statistics
Matches: 90, Mismatches: 17, Indels: 24
0.69 0.13 0.18
Matches are distributed among these distances:
8 17 0.19
9 35 0.39
10 21 0.23
11 9 0.10
12 6 0.07
13 2 0.02
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (9 bp):
AATTTTTAA
Found at i:32670364 original size:3 final size:3
Alignment explanation
Indices: 32670356--32670405 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
32670346 AGATTTTAGA
*
32670356 AAT AAT AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32670404 AA
1 AA
32670406 ATATAGAGAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:32681337 original size:46 final size:47
Alignment explanation
Indices: 32681213--32681364 Score: 152
Period size: 46 Copynumber: 3.2 Consensus size: 47
32681203 CGACGCCATG
* * * *
32681213 TCCCAGACATGGTCTTACACTAGCTCTCACATATCCGT-GCCGATGCCATG
1 TCCCAGACATGGTCTTACATTGGCT-T-ACATCT-CGTAGCCGATG-CATA
* *
32681263 TCCCAGCCATGGTCTTACATTGAC--ACATCTCGTAGCCGATGCATA
1 TCCCAGACATGGTCTTACATTGGCTTACATCTCGTAGCCGATGCATA
*
32681308 TCCCAGACAT-GTCTTACATTGGCTTACATCTCG-AGGCTGATGCATA
1 TCCCAGACATGGTCTTACATTGGCTTACATCTCGTA-GCCGATGCATA
*
32681354 TCCCAAACATG
1 TCCCAGACATG
32681365 TCTAACACTA
Statistics
Matches: 87, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
44 12 0.14
45 16 0.18
46 39 0.45
50 20 0.23
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (47 bp):
TCCCAGACATGGTCTTACATTGGCTTACATCTCGTAGCCGATGCATA
Found at i:32688172 original size:31 final size:31
Alignment explanation
Indices: 32688130--32688192 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
32688120 GAGAATCGGT
32688130 TGGCTAAAGAATGAGGAAGATGACAACCATC
1 TGGCTAAAGAATGAGGAAGATGACAACCATC
* *
32688161 TGGCTAGAGAATGAGGAAGATGACAACTATC
1 TGGCTAAAGAATGAGGAAGATGACAACCATC
32688192 T
1 T
32688193 TCATCTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.14, G:0.27, T:0.19
Consensus pattern (31 bp):
TGGCTAAAGAATGAGGAAGATGACAACCATC
Found at i:32689036 original size:17 final size:19
Alignment explanation
Indices: 32689003--32689055 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
32688993 AAATTAAAAA
32689003 AATAAAAATCAATT-AAAGTT
1 AATAAAAAT--ATTAAAAGTT
*
32689023 -ATAAAAATATTAAAATTT
1 AATAAAAATATTAAAAGTT
32689041 AATAAAAATA-TAAAA
1 AATAAAAATATTAAAA
32689056 ATATATTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
17 3 0.10
18 10 0.33
19 17 0.57
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (19 bp):
AATAAAAATATTAAAAGTT
Found at i:32689045 original size:19 final size:19
Alignment explanation
Indices: 32689023--32689122 Score: 80
Period size: 19 Copynumber: 5.3 Consensus size: 19
32689013 AATTAAAGTT
* *
32689023 ATAAAAATATTAAAATTTA
1 ATAAAAATATAAAAATATA
32689042 ATAAAAATATAAAAATATA
1 ATAAAAATATAAAAATATA
*
32689061 TTAAAAATTATAAAAA-ATA
1 ATAAAAA-TATAAAAATATA
* * * * *
32689080 ACAAAATTGT-AAAATTTT
1 ATAAAAATATAAAAATATA
*
32689098 ATAAAAATCATAAAAA-ATT
1 ATAAAAAT-ATAAAAATATA
32689117 ATAAAA
1 ATAAAA
32689123 TGAAAAAAAA
Statistics
Matches: 64, Mismatches: 13, Indels: 8
0.75 0.15 0.09
Matches are distributed among these distances:
17 4 0.06
18 9 0.14
19 39 0.61
20 12 0.19
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (19 bp):
ATAAAAATATAAAAATATA
Found at i:32689061 original size:10 final size:10
Alignment explanation
Indices: 32689022--32689122 Score: 60
Period size: 9 Copynumber: 10.7 Consensus size: 10
32689012 CAATTAAAGT
32689022 TATAAAAATA
1 TATAAAAATA
32689032 T-T-AAAAT-
1 TATAAAAATA
*
32689039 T-TAATAAAAA
1 TATAA-AAATA
32689049 TATAAAAATA
1 TATAAAAATA
32689059 TATTAAAAAT-
1 TA-TAAAAATA
32689069 TATAAAAA-A
1 TATAAAAATA
32689078 TA-ACAAAAT-
1 TATA-AAAATA
* * *
32689087 TGTAAAATTT
1 TATAAAAATA
32689097 TATAAAAATCA
1 TATAAAAAT-A
32689108 TA-AAAAAT-
1 TATAAAAATA
32689116 TATAAAA
1 TATAAAA
32689123 TGAAAAAAAA
Statistics
Matches: 72, Mismatches: 7, Indels: 25
0.69 0.07 0.24
Matches are distributed among these distances:
7 2 0.03
8 9 0.12
9 25 0.35
10 24 0.33
11 12 0.17
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.32
Consensus pattern (10 bp):
TATAAAAATA
Found at i:32689076 original size:29 final size:28
Alignment explanation
Indices: 32689022--32689115 Score: 97
Period size: 27 Copynumber: 3.4 Consensus size: 28
32689012 CAATTAAAGT
*
32689022 TATAAAA-ATATTAAAATTTAATAAAAA
1 TATAAAAAATATTAAAAATTAATAAAAA
32689049 TATAAAAATATATTAAAAATT-ATAAAAA
1 TATAAAAA-ATATTAAAAATTAATAAAAA
* *
32689077 -ATAACAAAAT-TGTAAAATTTTATAAAAA
1 TATAA-AAAATAT-TAAAAATTAATAAAAA
32689105 TCATAAAAAAT
1 T-ATAAAAAAT
32689116 TATAAAATGA
Statistics
Matches: 58, Mismatches: 2, Indels: 12
0.81 0.03 0.17
Matches are distributed among these distances:
26 1 0.02
27 20 0.34
28 17 0.29
29 16 0.28
30 4 0.07
ACGTcount: A:0.65, C:0.02, G:0.01, T:0.32
Consensus pattern (28 bp):
TATAAAAAATATTAAAAATTAATAAAAA
Found at i:32689116 original size:29 final size:28
Alignment explanation
Indices: 32689025--32689123 Score: 107
Period size: 28 Copynumber: 3.5 Consensus size: 28
32689015 TTAAAGTTAT
*
32689025 AAAAATATTAAAATTTAATAAAAATATA
1 AAAAATATTAAAATTTTATAAAAATATA
*
32689053 AAAATATATTAAAA-ATTATAAAAA-ATA
1 AAAA-ATATTAAAATTTTATAAAAATATA
32689080 ACAAAAT-TGTAAAATTTTATAAAAATCATA
1 A-AAAATAT-TAAAATTTTATAAAAAT-ATA
32689110 AAAAAT-TATAAAAT
1 AAAAATAT-TAAAAT
32689124 GAAAAAAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 11
0.80 0.05 0.14
Matches are distributed among these distances:
26 1 0.02
27 11 0.18
28 24 0.39
29 21 0.34
30 4 0.07
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (28 bp):
AAAAATATTAAAATTTTATAAAAATATA
Found at i:32689329 original size:20 final size:20
Alignment explanation
Indices: 32689304--32689356 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
32689294 TTAATATAAT
*
32689304 AATTTTATAATTTTTTTACG
1 AATTTTATAATTTTTTTACA
*
32689324 AATTTTAT-ATTTATTTACA
1 AATTTTATAATTTTTTTACA
32689343 AATTTTATAATTTT
1 AATTTTATAATTTT
32689357 CTTATGACTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (20 bp):
AATTTTATAATTTTTTTACA
Found at i:32689425 original size:20 final size:19
Alignment explanation
Indices: 32689402--32689473 Score: 65
Period size: 19 Copynumber: 3.7 Consensus size: 19
32689392 TTTATAATTT
32689402 TTTTTATGATTTTTATAAAA
1 TTTTTAT-ATTTTTATAAAA
* *
32689422 -TTTTACAACTTTTTATAAAT
1 TTTTTA-TA-TTTTTATAAAA
* *
32689442 TTTTTACAATTTTATAAAA
1 TTTTTATATTTTTATAAAA
*
32689461 TTTTAATATTTTT
1 TTTTTATATTTTT
32689474 TTATAGTTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
19 25 0.61
20 11 0.27
21 5 0.12
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.60
Consensus pattern (19 bp):
TTTTTATATTTTTATAAAA
Found at i:32689425 original size:21 final size:20
Alignment explanation
Indices: 32689391--32689464 Score: 62
Period size: 20 Copynumber: 3.7 Consensus size: 20
32689381 TTTCTATATA
** *
32689391 TTTTATAATTTTTTTTATGAT
1 TTTTATAAAATTTTTTA-AAT
** *
32689412 TTTTATAAAATTTTACAACT
1 TTTTATAAAATTTTTTAAAT
32689432 TTTTAT-AAATTTTTTACAA-
1 TTTTATAAAATTTTTTA-AAT
32689451 TTTTATAAAATTTT
1 TTTTATAAAATTTT
32689465 AATATTTTTT
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
19 14 0.33
20 15 0.36
21 13 0.31
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (20 bp):
TTTTATAAAATTTTTTAAAT
Found at i:32689434 original size:19 final size:19
Alignment explanation
Indices: 32689410--32689465 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
32689400 TTTTTTTATG
32689410 ATTTTTATAAAATTTTACA
1 ATTTTTATAAAATTTTACA
*
32689429 ACTTTTTATAAATTTTTTACA
1 A-TTTTTATAAA-ATTTTACA
32689450 A-TTTTATAAAATTTTA
1 ATTTTTATAAAATTTTA
32689466 ATATTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 5 0.15
19 10 0.30
20 10 0.30
21 8 0.24
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTTTTATAAAATTTTACA
Found at i:32689474 original size:20 final size:18
Alignment explanation
Indices: 32689410--32689473 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 18
32689400 TTTTTTTATG
32689410 ATTTTTATAAAATTTTACA
1 ATTTTTATAAAATTTTA-A
*
32689429 ACTTTTTATAAATTTTTTACA
1 A-TTTTTATAAA-ATTTTA-A
32689450 A-TTTTATAAAATTTTAA
1 ATTTTTATAAAATTTTAA
32689467 TATTTTT
1 -ATTTTT
32689474 TTATAGTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
17 1 0.03
18 6 0.15
19 14 0.36
20 10 0.26
21 8 0.21
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTATAAAATTTTAA
Found at i:32689506 original size:29 final size:29
Alignment explanation
Indices: 32689441--32689508 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
32689431 TTTTTATAAA
* *
32689441 TTTTTTACAATTTTATAAAATTTTAATAT
1 TTTTTTATAATTTTATAAAATTTTAATAG
*
32689470 TTTTTTATAGTTTTATTAAAA-TTTAATAG
1 TTTTTTATAATTTTA-TAAAATTTTAATAG
32689499 TTTTTTATAA
1 TTTTTTATAA
32689509 CATTTATTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 29 0.85
30 5 0.15
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.60
Consensus pattern (29 bp):
TTTTTTATAATTTTATAAAATTTTAATAG
Found at i:32689515 original size:30 final size:30
Alignment explanation
Indices: 32689452--32689516 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
32689442 TTTTTACAAT
* **
32689452 TTTA-TAAAATTTTAATATTTTTTTATAGT
1 TTTATTAAAATTTTAATAGTTTTTTATACA
32689481 TTTATTAAAA-TTTAATAGTTTTTTATAACA
1 TTTATTAAAATTTTAATAGTTTTTTAT-ACA
32689511 TTTATT
1 TTTATT
32689517 GGTTTTTGTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 19 0.61
30 12 0.39
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (30 bp):
TTTATTAAAATTTTAATAGTTTTTTATACA
Found at i:32690395 original size:17 final size:18
Alignment explanation
Indices: 32690363--32690396 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32690353 AAAGAAATTT
*
32690363 CTTTTACCTTCCCCAAAA
1 CTTTTACCTACCCCAAAA
32690381 CTTTTA-CTACCCCAAA
1 CTTTTACCTACCCCAAA
32690397 CCTCCCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.29, C:0.38, G:0.00, T:0.32
Consensus pattern (18 bp):
CTTTTACCTACCCCAAAA
Found at i:32690467 original size:56 final size:54
Alignment explanation
Indices: 32690360--32690473 Score: 149
Period size: 55 Copynumber: 2.1 Consensus size: 54
32690350 AAAAAAGAAA
32690360 TTTCTTTTACCTTCCCCAAAACTTTTACTACCCCAAACCTCCCAAAACTTTTTCT
1 TTTCTTTTACCTTCCCCAAAACTTTTACTACCCCAAACCTCCCAAAACTTTTT-T
* * * * *
32690415 TTTCTTTTGCTTTTCCCAAAACTTTTACTTCTTCCTAAACC-CCCAAAACTTTTTT
1 TTTCTTTTACCTTCCCCAAAACTTTTACTAC--CCCAAACCTCCCAAAACTTTTTT
32690470 TTTC
1 TTTC
32690474 GAATTTATGT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
55 32 0.62
56 13 0.25
57 7 0.13
ACGTcount: A:0.23, C:0.32, G:0.01, T:0.44
Consensus pattern (54 bp):
TTTCTTTTACCTTCCCCAAAACTTTTACTACCCCAAACCTCCCAAAACTTTTTT
Found at i:32691223 original size:16 final size:15
Alignment explanation
Indices: 32691202--32691249 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
32691192 GATGTGAATA
32691202 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
32691218 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
32691233 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
32691249 A
1 A
32691250 ATAATTAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:32691225 original size:24 final size:24
Alignment explanation
Indices: 32691198--32691253 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
32691188 TAATGATGTG
*
32691198 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
32691222 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
32691246 AATAATAA
1 AATAATAA
32691254 TTAATATTGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:32691232 original size:8 final size:8
Alignment explanation
Indices: 32691198--32691249 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
32691188 TAATGATGTG
*
32691198 AATAATAA
1 AATATTAA
32691206 AATATATAA
1 AATAT-TAA
32691215 AATA-TAA
1 AATATTAA
32691222 AATATTAA
1 AATATTAA
*
32691230 AATATCAA
1 AATATTAA
*
32691238 AATATTAG
1 AATATTAA
32691246 AATA
1 AATA
32691250 ATAATTAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Done.