Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 102 of 325
Found at i:32691483 original size:26 final size:25
Alignment explanation
Indices: 32691454--32691514 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
32691444 TAGTTAAGAT
32691454 ATATACATAAGATAACATGTAAAAAA
1 ATATACATAAGATAACAT-TAAAAAA
* * * * *
32691480 ATATAAATAATATAATATTAAAGAT
1 ATATACATAAGATAACATTAAAAAA
32691505 ATATACATAA
1 ATATACATAA
32691515 AATAGTATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
25 14 0.48
26 15 0.52
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.30
Consensus pattern (25 bp):
ATATACATAAGATAACATTAAAAAA
Found at i:32691508 original size:25 final size:25
Alignment explanation
Indices: 32691393--32691607 Score: 125
Period size: 25 Copynumber: 9.0 Consensus size: 25
32691383 TAAATACGTG
* *
32691393 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAGATATATACATAAT
* * * *
32691418 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAGATATATACATAAT
* *
32691443 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAGATATATACATAAT
* * * *
32691465 ATAACATGTAAAAAAATATAAATAAT
1 ATAATAT-TAAAGATATATACATAAT
*
32691491 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAGATATATACATAAT
* * *
32691516 ATAGTA-TAAATATATATATAGTAAT
1 ATAATATTAAAGATATATACA-TAAT
* *
32691541 ATAGA-ATTTAA-A-ATATACCTAAT
1 ATA-ATATTAAAGATATATACATAAT
*
32691564 AT-AT-TAAAAGA-ATAT--ATAAT
1 ATAATATTAAAGATATATACATAAT
*
32691584 ATAATATT-AAGAAATATA-ATAAT
1 ATAATATTAAAGATATATACATAAT
32691607 A
1 A
32691608 ACAAAAAAGA
Statistics
Matches: 147, Mismatches: 30, Indels: 28
0.72 0.15 0.14
Matches are distributed among these distances:
20 6 0.04
21 10 0.07
22 25 0.17
23 16 0.11
24 18 0.12
25 51 0.35
26 21 0.14
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
ATAATATTAAAGATATATACATAAT
Found at i:32691585 original size:20 final size:20
Alignment explanation
Indices: 32691560--32691604 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
32691550 AAAATATACC
*
32691560 TAATATATTA-AAAGAATATA
1 TAATATAATATAAAGAA-ATA
*
32691580 TAATATAATATTAAGAAATA
1 TAATATAATATAAAGAAATA
32691600 TAATA
1 TAATA
32691605 ATAACAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
TAATATAATATAAAGAAATA
Found at i:32692132 original size:30 final size:30
Alignment explanation
Indices: 32692096--32692269 Score: 296
Period size: 30 Copynumber: 5.8 Consensus size: 30
32692086 TAGGTACAAG
* *
32692096 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
32692126 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
32692156 TGGTGGTGG-AAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
32692185 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
*
32692215 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
32692245 TGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGGAAAAGGAGTGGCTAGT
32692270 TGAGAAAAGT
Statistics
Matches: 135, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
29 28 0.21
30 107 0.79
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.25
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:32692181 original size:59 final size:59
Alignment explanation
Indices: 32692096--32692269 Score: 312
Period size: 59 Copynumber: 2.9 Consensus size: 59
32692086 TAGGTACAAG
32692096 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGA-AAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
32692156 TGGTGGTGGAAAGGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
*
32692215 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGTGG-AAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGT
32692270 TGAGAAAAGT
Statistics
Matches: 110, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
59 57 0.52
60 53 0.48
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.25
Consensus pattern (59 bp):
TGGTGGTGGAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
Found at i:32692247 original size:89 final size:90
Alignment explanation
Indices: 32692096--32692269 Score: 296
Period size: 89 Copynumber: 1.9 Consensus size: 90
32692086 TAGGTACAAG
* * *
32692096 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
32692161 GTGG-AAAGGAGTGGCTAGTGGAGT
66 GTGGAAAAGGAGTGGCTAGTGGAGT
* *
32692185 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTG
1 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
32692250 GTGGAAAAGGAGTGGCTAGT
66 GTGGAAAAGGAGTGGCTAGT
32692270 TGAGAAAAGT
Statistics
Matches: 79, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 64 0.81
90 15 0.19
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.25
Consensus pattern (90 bp):
TGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTGGTGGAAAAAGAGTGGCTAGTGGAGTTGGTG
GTGGAAAAGGAGTGGCTAGTGGAGT
Found at i:32692993 original size:14 final size:14
Alignment explanation
Indices: 32692957--32693007 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
32692947 GAGTTGATTT
* *
32692957 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
32692971 TTGAAAAAAACAGAAA
1 TTG--AAAAACAGAAA
*
32692987 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
32693001 TT-AAAAA
1 TTGAAAAA
32693008 GACCTCAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
16 12 0.39
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:32693185 original size:75 final size:74
Alignment explanation
Indices: 32692987--32694015 Score: 640
Period size: 73 Copynumber: 13.3 Consensus size: 74
32692977 AAAACAGAAA
* * * * *
32692987 TTGAAAAGCAGAAATTAAAAAGACCTCAGAATGTGAGCC-GAGACTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTAAAAATACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
* *
32693051 TGGGTT-AATTT
63 TGAGTTGATTTT
* * * *
32693062 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
32693127 GTTGATTTT
66 GTTGATTTT
32693136 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
32693201 AGTTGATTTTTTT
65 AGTTGA---TTTT
* ** * ** * * * * **
32693214 TTTACGAACAGAAATTGAAGAACAGAAATTGAAAAAACCTCAG-CATGTGAACTAAGGCTCAACT
1 TTGAAAAACAGAAATT-AA-AA-A-TACCT----CAGCGT--GTC--CTG-AGG----CTCAACT
*
32693278 CACCTCTCGCAATATGAGTT-AATTT
49 CACCTCTCGCAATATGAGTTGATTTT
* * * * * * * *
32693303 TTGACAAACAGAAATTGAAATTACCTCAGCATATCCCGAGGCTCAACTCACCTTTCACAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
32693368 GTTGATTTT
66 GTTGATTTT
* *
32693377 TTGAAAAACAGAAATTTAAAAATACCTCAACGTGTCCTGAGGCTCAACTTACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
32693442 AGTTGATTTT
65 AGTTGATTTT
* ** * ** * * * *
32693452 TTTACGAACAGAAATTGAAGAACAGAAATTGAAAGACCTCAG-CATGTA-GC-CGAGGCTCAACT
1 TTGAAAAACAGAAATT-AA-AA-A-TACCT--CAG-CGT--GTCCTG-AGGCTC-A---AC---T
*
32693514 CACCTCTCGCAATATGAGTT-A-ATT
49 CACCTCTCGCAATATGAGTTGATTTT
* * *
32693538 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
32693602 GTTGA-TTT
66 GTTGATTTT
*
32693610 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
32693675 AGTTGATTTTTT
65 AGTTGA--TTTT
* ** ** * * * * *
32693687 TTTACGAACAGAAATTGAAAAATAGAAATTGAAAAGACCTCAG-CATGTGAGC-CGAGGCTCAAC
1 TTGAAAAACAGAAATT-AAAAAT---ACCT---CAG-CGT--GTCCTGAG-GCTC-A-ACT----
32693750 TCACCTCTCGCAATATGAGTTGA-TTT
49 -CACCTCTCGCAATATGAGTTGATTTT
* * * * *
32693776 TTGAAAAACAGAAATTGAAATTACCTCAGCTTGTCTTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
32693841 GTTGA-TTT
66 GTTGATTTT
* * * *
32693849 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
32693914 GTTGA--TT
66 GTTGATTTT
* * ** * * *
32693921 TTG-AAAACAAAAATTAAAAGTA-CTCAATGTGTCTTGAGGCTCAACTCATCGCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
32693984 GTTGATTTT
66 GTTGATTTT
*
32693993 CCTTGAAAAGCATG-AATTAAAAA
1 --TTGAAAAACA-GAAATTAAAAA
32694016 CATCTAAATA
Statistics
Matches: 750, Mismatches: 126, Indels: 156
0.73 0.12 0.15
Matches are distributed among these distances:
70 40 0.05
71 36 0.05
72 25 0.03
73 164 0.22
74 73 0.10
75 154 0.21
76 5 0.01
77 29 0.04
78 24 0.03
79 8 0.01
80 12 0.02
81 10 0.01
82 10 0.01
83 4 0.01
84 4 0.01
85 14 0.02
86 21 0.03
87 6 0.01
88 27 0.04
89 34 0.05
92 23 0.03
93 27 0.04
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (74 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:32693238 original size:14 final size:14
Alignment explanation
Indices: 32693219--32693246 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32693209 TTTTTTTTAC
32693219 GAACAGAAATTGAA
1 GAACAGAAATTGAA
32693233 GAACAGAAATTGAA
1 GAACAGAAATTGAA
32693247 AAAACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:32693294 original size:93 final size:92
Alignment explanation
Indices: 32693136--32693304 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 92
32693126 AGTTGATTTT
* ** *
32693136 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAAATACCTCAGCGTGAACTAAGGCTCAACTCACCTCTCGCAATATG
*
32693201 AGTTGATTTTTTTTTTACGAACAGAAA
66 AGTTAATTTTTTTTTTACGAACAGAAA
*
32693228 TTGAAGAACAGAAATTGAAAAA-ACCTCAGCATGTGAACTAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAAATACCTCAGC--GTGAACTAAGGCTCAACTCACCTCTCGCAATA
32693292 TGAGTTAATTTTT
64 TGAGTTAATTTTT
32693305 GACAAACAGA
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
91 8 0.12
92 20 0.29
93 41 0.59
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (92 bp):
TTGAAAAACAGAAATTGAAAAATACCTCAGCGTGAACTAAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTTTTTTTTTACGAACAGAAA
Found at i:32693402 original size:241 final size:239
Alignment explanation
Indices: 32692979--32693922 Score: 1528
Period size: 241 Copynumber: 4.0 Consensus size: 239
32692969 AATTGAAAAA
* *
32692979 AACAGAAATTGAA-AAGCAGAAATT-AAAAAGACCTCAGAATGTGAGCCGAGACTCAACTCACCT
1 AACAGAAATTGAAGAA-CAGAAATTGAAAAA-ACCTCAGCATGTGAGCCGAGGCTCAACTCACCT
* *
32693042 CTCGCAATATGGGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
64 CTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCA
32693107 ACTCACCTTTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTC
129 ACTCACCTTTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTC
32693172 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTACG
193 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTTACG
* **
32693220 AACAGAAATTGAAGAACAGAAATTGAAAAAACCTCAGCATGTGAACTAAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAAACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
* *
32693285 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCATATCCCGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* *
32693350 TCACCTTTCACAATATGAGTTGATTTTTTGAAAAACAGAAATTTAAAAATACCTCAACGTGTCCT
131 TCACCTTTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCT
*
32693415 GAGGCTCAACTTACCTCTCGCAATATGAGTTGA--TTTTTTTACG
195 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACG
*
32693458 AACAGAAATTGAAGAACAGAAATTG-AAAGACCTCAGCATGT-AGCCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAAACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
32693521 CGCAATATGAGTTAA-TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT-CCGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* *
32693584 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCTTG
131 TCACCTTTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
32693649 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACG
196 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACG
* * *
32693693 AACAGAAATTGAAAAATAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAAACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
* * * **
32693758 CGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCTTGTCTTGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* * * *
32693823 TCACCTATCGCAATATGAGTTGATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCTG
131 TCACCTTTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
*
32693887 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
196 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
32693923 GAAAACAAAA
Statistics
Matches: 659, Mismatches: 36, Indels: 19
0.92 0.05 0.03
Matches are distributed among these distances:
233 71 0.11
234 33 0.05
235 67 0.10
236 50 0.08
237 51 0.08
238 125 0.19
239 48 0.07
241 207 0.31
242 7 0.01
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.28
Consensus pattern (239 bp):
AACAGAAATTGAAGAACAGAAATTGAAAAAACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
TCACCTTTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACG
Found at i:32693476 original size:14 final size:14
Alignment explanation
Indices: 32693457--32693484 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32693447 ATTTTTTTAC
32693457 GAACAGAAATTGAA
1 GAACAGAAATTGAA
32693471 GAACAGAAATTGAA
1 GAACAGAAATTGAA
32693485 AGACCTCAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:32693511 original size:163 final size:159
Alignment explanation
Indices: 32693309--32693611 Score: 455
Period size: 163 Copynumber: 1.9 Consensus size: 159
32693299 ATTTTTGACA
* *
32693309 AACAGAAATTGAAATTACCTCAGCATATCCCGAGGCTCAACTCACCTTTCACAATATGAGTTGAT
1 AACAGAAATTGAAATGACCTCAGCATATCCCGAGGCTCAACTCACCTCTCACAATATGAGTT-A-
* *
32693374 TTTTTGAAAAACAGAAATTTAAAAATACCTCAACGTGTCCTGAGGCTCAACTTACCTCTCGCAAT
64 ATTTTGAAAAACAGAAA-TTAAAAATACCTCAACGTGTCC-GAGGCTCAACTCACCTCTCGCAAT
32693439 ATGAGTTGATTTTTTTACGAACAGAAATTGAAG
127 ATGAGTTGATTTTTTTACGAACAGAAATTGAAG
* * *
32693472 AACAGAAATTGAAA-GACCTCAGCATGTAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAA
1 AACAGAAATTGAAATGACCTCAGCATAT-CCCGAGGCTCAACTCACCTCTCACAATATGAGTTAA
* * * *
32693536 TTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATG
65 TTTTGAAAAACAGAAATTAAAAATACCTCAACGTGTCCGAGGCTCAACTCACCTCTCGCAATATG
32693601 AGTTGATTTTT
130 AGTTGATTTTT
32693612 GAAAAACAGA
Statistics
Matches: 128, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
159 37 0.29
160 19 0.15
161 15 0.12
162 12 0.09
163 45 0.35
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (159 bp):
AACAGAAATTGAAATGACCTCAGCATATCCCGAGGCTCAACTCACCTCTCACAATATGAGTTAAT
TTTGAAAAACAGAAATTAAAAATACCTCAACGTGTCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTACGAACAGAAATTGAAG
Found at i:32702090 original size:12 final size:12
Alignment explanation
Indices: 32702073--32702103 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
32702063 TATGCAATAT
32702073 ATGAATGAATGC
1 ATGAATGAATGC
32702085 ATGAATGAATGC
1 ATGAATGAATGC
32702097 ATGAATG
1 ATGAATG
32702104 TCAAATGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (12 bp):
ATGAATGAATGC
Found at i:32703659 original size:16 final size:15
Alignment explanation
Indices: 32703638--32703685 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
32703628 GATGTGAATA
32703638 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
32703654 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
32703669 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
32703685 A
1 A
32703686 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:32703661 original size:24 final size:24
Alignment explanation
Indices: 32703634--32703689 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
32703624 TAATGATGTG
*
32703634 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
32703658 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
32703682 AATAATAA
1 AATAATAA
32703690 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:32703668 original size:8 final size:8
Alignment explanation
Indices: 32703634--32703685 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
32703624 TAATGATGTG
*
32703634 AATAATAA
1 AATATTAA
32703642 AATATATAA
1 AATAT-TAA
32703651 AATA-TAA
1 AATATTAA
32703658 AATATTAA
1 AATATTAA
*
32703666 AATATCAA
1 AATATTAA
*
32703674 AATATTAG
1 AATATTAA
32703682 AATA
1 AATA
32703686 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:32703900 original size:22 final size:24
Alignment explanation
Indices: 32703837--32703901 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
32703827 CGTGATAATA
*
32703837 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
32703862 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
32703885 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
32703902 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:32704020 original size:49 final size:49
Alignment explanation
Indices: 32703831--32704034 Score: 130
Period size: 49 Copynumber: 4.0 Consensus size: 49
32703821 AAAATACGTG
* * ** * *
32703831 ATAATATTAAAAATATGTACATAATATAGTGTTAAAA-ATACATACATAAT
1 ATAATATT-AAAATATATACATAAAATAGT-AAAAAATATATATATATAAT
* * * *
32703881 AT-A-GTTAAGATATATACATAAGATAACATGTAAAATATATATATATAAATAAT
1 ATAATATTAAAATATATACAT-A-A-AATA-GTAAAA-A-ATATATATATATAAT
* *
32703934 ATAATATTAAAATATATACATAAAATAGTATAAAATATATATATGTAAT
1 ATAATATTAAAATATATACATAAAATAGTAAAAAATATATATATATAAT
* * * *
32703983 ATAGA-ATTTAAA-ATATACCTAATATATTAAAAGAATATATATAATATAAT
1 ATA-ATATTAAAATATATACATAAAATAGTAAAA-AATATATAT-ATATAAT
32704033 AT
1 AT
32704035 TAAGAAATAT
Statistics
Matches: 121, Mismatches: 21, Indels: 24
0.73 0.13 0.14
Matches are distributed among these distances:
47 11 0.09
48 19 0.16
49 33 0.27
50 16 0.13
51 8 0.07
52 4 0.03
53 14 0.12
54 2 0.02
55 14 0.12
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.35
Consensus pattern (49 bp):
ATAATATTAAAATATATACATAAAATAGTAAAAAATATATATATATAAT
Found at i:32704049 original size:23 final size:25
Alignment explanation
Indices: 32703923--32704051 Score: 71
Period size: 24 Copynumber: 5.5 Consensus size: 25
32703913 AAATATATAT
* *
32703923 ATATAAATAATATAATATTAAAA-T
1 ATATATATAATATAATATTAAAAGA
* * * *
32703947 ATATACATAAAATAGTA-TAAAATA
1 ATATATATAATATAATATTAAAAGA
* *
32703971 TATATATGTAATATAGA-ATT-TAA-A
1 -ATATATATAATATA-ATATTAAAAGA
**
32703995 ATATACCT-A-AT-ATATTAAAAGA
1 ATATATATAATATAATATTAAAAGA
*
32704017 ATATATATAATATAATATTAAGA-A
1 ATATATATAATATAATATTAAAAGA
32704041 ATATA-ATAATA
1 ATATATATAATA
32704052 ACAAAAAATG
Statistics
Matches: 80, Mismatches: 15, Indels: 21
0.69 0.13 0.18
Matches are distributed among these distances:
19 1 0.01
20 3 0.04
21 4 0.05
22 8 0.10
23 18 0.22
24 23 0.29
25 22 0.28
26 1 0.01
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (25 bp):
ATATATATAATATAATATTAAAAGA
Found at i:32704577 original size:30 final size:30
Alignment explanation
Indices: 32704541--32704653 Score: 199
Period size: 30 Copynumber: 3.8 Consensus size: 30
32704531 TAGGTACAAG
*
32704541 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
* *
32704571 TGGTGGTGGAAAAAGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
32704601 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
32704631 TGGTGGTGGAAAAGGTGTGGCTA
1 TGGTGGTGGAAAAGGTGTGGCTA
32704654 CTTGAGAAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 78 1.00
ACGTcount: A:0.21, C:0.04, G:0.50, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:32705796 original size:20 final size:20
Alignment explanation
Indices: 32705773--32705813 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32705763 ATTCAATCCC
*
32705773 TTTACTTTTAATTTCAAAAT
1 TTTACTTTTAATTTAAAAAT
* *
32705793 TTTAGTTTTGATTTAAAAAT
1 TTTACTTTTAATTTAAAAAT
32705813 T
1 T
32705814 AAAGTCCAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTTTAATTTAAAAAT
Found at i:32707819 original size:29 final size:29
Alignment explanation
Indices: 32707764--32707819 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
32707754 ACGTTTACTG
* * *
32707764 TTCAAAATAAATCATTTATGTACATAACT
1 TTCAAAATAAATCATATATATAAATAACT
* *
32707793 TTCAAAGTGAATCATATATATAAATAA
1 TTCAAAATAAATCATATATATAAATAA
32707820 TTAAAATTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.36
Consensus pattern (29 bp):
TTCAAAATAAATCATATATATAAATAACT
Found at i:32708615 original size:42 final size:42
Alignment explanation
Indices: 32708556--32708642 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
32708546 TAATTCCATT
32708556 TCAAAACCACTTGAATTGTTTGATTCACCATCATCATTATCA
1 TCAAAACCACTTGAATTGTTTGATTCACCATCATCATTATCA
*
32708598 TCAAAACCAGTTGAATTGTTTGATTCACCATCATCATTATCA
1 TCAAAACCACTTGAATTGTTTGATTCACCATCATCATTATCA
32708640 TCA
1 TCA
32708643 TCACTTTCTC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.33, C:0.23, G:0.08, T:0.36
Consensus pattern (42 bp):
TCAAAACCACTTGAATTGTTTGATTCACCATCATCATTATCA
Found at i:32710801 original size:21 final size:19
Alignment explanation
Indices: 32710769--32710807 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
32710759 TTGAGAGTTG
*
32710769 AAAAAAGAATAAATAATAT
1 AAAAAAGAATAAAAAATAT
32710788 AAAAAAGACTATAAAAAATA
1 AAAAAAGA--ATAAAAAATA
32710808 CAATGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
21 9 0.53
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (19 bp):
AAAAAAGAATAAAAAATAT
Found at i:32715575 original size:47 final size:45
Alignment explanation
Indices: 32715504--32715764 Score: 199
Period size: 47 Copynumber: 5.6 Consensus size: 45
32715494 TGATTTGTGC
*
32715504 GCCAGTGTAAGACATGTCTGGGACATGCTTTGGTCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGG-CACATTATGAGA
* * * ** *
32715550 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCACA-TTATGAGA
* * *
32715598 GCCAGAGTAAGACATGTCTGAGACATGCATTGGC-C-TTGACAGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCACATT-A-TGAG--A
* * * * *
32715645 GCCAGTGTAAGACGTGTCTGGGACACGCATTGGCTA-A-GA-GTCGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGGC-ACATTATG-AGA
* **
32715689 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCATATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGGCA--CAT-TATGAGA
32715737 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
32715765 GCATCAACAA
Statistics
Matches: 165, Mismatches: 32, Indels: 33
0.72 0.14 0.14
Matches are distributed among these distances:
43 1 0.01
44 30 0.18
45 4 0.02
46 20 0.12
47 60 0.36
48 34 0.21
49 16 0.10
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATTGGCACATTATGAGA
Found at i:32715714 original size:91 final size:94
Alignment explanation
Indices: 32715504--32715769 Score: 280
Period size: 94 Copynumber: 2.8 Consensus size: 94
32715494 TGATTTGTGC
* *
32715504 GCCAGTGTAAGACATGTCTGGGACATGCTTTGGTCACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGGTCACATTAAGAGAGCCAGTGTAAGACCATGTC
*
32715569 TGGGACATGGCATCGGTATAGAGATGAGT
66 TGGGACATCGCATCGGTATAGAGATGAGT
* * *
32715598 GCCAGAGTAAGACATGTCTGAGACATGCATTGG-C-C-TTGACAGAGATAGCCAGTGTAAGA-CG
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGGTCACATT-A-AGAG--AGCCAGTGTAAGACCA
* *
32715659 TGTCTGGGACA-CGCATTGGCTA-AGAG-T-CGT
62 TGTCTGGGACATCGCATCGG-TATAGAGATGAGT
* ** *
32715689 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CACGCATATATGAGAGCCAGTGTAAGACCAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATTGGTCA--CAT-TAAGAGAGCCAGTGTAAGACCAT
*
32715753 GTCTGGGACATGGCATC
63 GTCTGGGACATCGCATC
32715770 AACAATATAT
Statistics
Matches: 143, Mismatches: 17, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
91 33 0.23
92 16 0.11
93 26 0.18
94 52 0.36
95 15 0.10
96 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (94 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATTGGTCACATTAAGAGAGCCAGTGTAAGACCATGTC
TGGGACATCGCATCGGTATAGAGATGAGT
Found at i:32719108 original size:21 final size:21
Alignment explanation
Indices: 32719083--32719131 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 21
32719073 AAAATATAGT
32719083 TTAAAAATAATTTAATATTAA-A
1 TTAAAAATAA-TT-ATATTAATA
32719105 -TAAAAATAATTATATTAATA
1 TTAAAAATAATTATATTAATA
32719125 TTAAAAA
1 TTAAAAA
32719132 AACCCCTCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 7 0.28
20 3 0.12
21 15 0.60
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TTAAAAATAATTATATTAATA
Found at i:32719716 original size:26 final size:24
Alignment explanation
Indices: 32719662--32719717 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 24
32719652 AAAGAAAAAC
* *
32719662 AATATTAATATAATTATTTTATTT
1 AATATTAATATAAATATTTTAATT
32719686 AATATTAATATAAAAATATTTTTAATT
1 AATATTAATAT--AAATA-TTTTAATT
32719713 -ATATT
1 AATATT
32719718 TCAATGATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 11 0.41
26 9 0.33
27 7 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
AATATTAATATAAATATTTTAATT
Found at i:32730104 original size:20 final size:20
Alignment explanation
Indices: 32730079--32730125 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
32730069 GTTTTAATAT
32730079 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
32730099 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
32730119 ACATGAT
1 ACATGAT
32730126 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:32730201 original size:26 final size:26
Alignment explanation
Indices: 32730173--32730268 Score: 135
Period size: 25 Copynumber: 3.8 Consensus size: 26
32730163 AGGAAGTGCA
*
32730173 AAAAGGGC-TATGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
* **
32730198 AAAAGGGCTTTTGCCCTAGTTTA-TT
1 AAAAGGGCTTTTGCCCCAGTTTACCG
32730223 AAAAGGGCTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
32730249 AAAAGGGC-TTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
32730269 ATTAAAAGAG
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
25 42 0.68
26 20 0.32
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCG
Found at i:32730248 original size:51 final size:49
Alignment explanation
Indices: 32730173--32730281 Score: 166
Period size: 51 Copynumber: 2.2 Consensus size: 49
32730163 AGGAAGTGCA
*
32730173 AAAAGGGC-TATGCCCCAGTTTACCGAAAAGGGCTTTTGCCCTAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGC-TTTGCCCCAG-TTATT
*
32730223 AAAAGGGCTTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTATT
32730272 AAAAGAGGCT
1 AAAAG-GGCT
32730282 AGGCCTCCAG
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
49 10 0.18
50 21 0.38
51 24 0.44
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTATT
Found at i:32730529 original size:31 final size:31
Alignment explanation
Indices: 32730491--32730554 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
32730481 CGTTTATAGT
*
32730491 AAAGGCTTTGACCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
* * **
32730522 AAAGGCTTCGGCCTAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
32730553 AA
1 AA
32730555 TATGAAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:32730553 original size:7 final size:7
Alignment explanation
Indices: 32730541--32730568 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
32730531 GGCCTAGTGT
32730541 TATGAAA
1 TATGAAA
32730548 TATGAAA
1 TATGAAA
32730555 TATGAAA
1 TATGAAA
32730562 TATGAAA
1 TATGAAA
32730569 AGGCTTCGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (7 bp):
TATGAAA
Found at i:32742272 original size:9 final size:9
Alignment explanation
Indices: 32742244--32742293 Score: 50
Period size: 9 Copynumber: 5.8 Consensus size: 9
32742234 GTTATCGTGG
*
32742244 AATTTAATA
1 AATTTAATT
*
32742253 AAATT-ATT
1 AATTTAATT
32742261 AATTTAATT
1 AATTTAATT
*
32742270 AATTTAATG
1 AATTTAATT
*
32742279 AAATT-ATT
1 AATTTAATT
32742287 AATTTAA
1 AATTTAA
32742294 ATCAAGAATG
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
8 12 0.38
9 20 0.62
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (9 bp):
AATTTAATT
Found at i:32742276 original size:26 final size:26
Alignment explanation
Indices: 32742244--32742293 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
32742234 GTTATCGTGG
32742244 AATTTAATAAAATTATTAATTTAATT
1 AATTTAATAAAATTATTAATTTAATT
*
32742270 AATTTAATGAAATTATTAATTTAA
1 AATTTAATAAAATTATTAATTTAA
32742294 ATCAAGAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (26 bp):
AATTTAATAAAATTATTAATTTAATT
Found at i:32745266 original size:20 final size:20
Alignment explanation
Indices: 32745217--32745273 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
32745207 AGTTTATGTG
* * *
32745217 AAGTAAATGAAATGGAAAGT
1 AAGTAAATGGAATGGTAAGA
32745237 AAGTAAATGGAATGGTAAGA
1 AAGTAAATGGAATGGTAAGA
*
32745257 AAGTAAATGGAGTGGTA
1 AAGTAAATGGAATGGTA
32745274 CATAGTTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.30, T:0.21
Consensus pattern (20 bp):
AAGTAAATGGAATGGTAAGA
Found at i:32751493 original size:48 final size:48
Alignment explanation
Indices: 32751431--32751599 Score: 234
Period size: 48 Copynumber: 3.6 Consensus size: 48
32751421 TGATATGTGT
*
32751431 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* * * * * *
32751479 GCCAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACA-A-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
* *
32751525 GCTAGTGTAAGACATGTCTAGGACATGCATCGGTCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
*
32751573 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
32751600 GCGTCAGCTT
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
46 37 0.36
47 2 0.02
48 64 0.62
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAA
Found at i:32751687 original size:49 final size:49
Alignment explanation
Indices: 32751437--32751746 Score: 155
Period size: 49 Copynumber: 6.5 Consensus size: 49
32751427 GTGTGCTAGT
* * * * * *
32751437 GTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-ACCAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGGACTCGATAGATGA-AAGCCAGC
* * * * *
32751485 GTAAGACATGTCTGGGACAT-GCATC-GACATTG--AGA-CAAGAGCTAGT
1 GTAAGACCTGTCTGGGACATGGCATCGGAC-TCGATAGATGAA-AGCCAGC
* * * * * * *
32751531 GTAAGACATGTCTAGGACAT-GCATCGGTCTCGAGATAT-ACAAGCTAGT
1 GTAAGACCTGTCTGGGACATGGCATCGGACTCGATAGATGA-AAGCCAGC
* * * * * * **
32751579 GTAAGACCTGTCTGGGACATGGCGTCAG-CTTG-TTG-TG-TA-TCAAT
1 GTAAGACCTGTCTGGGACATGGCATCGGACTCGATAGATGAAAGCCAGC
* *
32751623 GTAAGACTTGTCTGGGACATGGCATC-GACATCGATAGATGAGAGCCAGC
1 GTAAGACCTGTCTGGGACATGGCATCGGAC-TCGATAGATGAAAGCCAGC
* * * * *
32751672 GTAAGACCTGTCTGGGACACGGCATCGGTCTCGATATATGAAAGTCAGT
1 GTAAGACCTGTCTGGGACATGGCATCGGACTCGATAGATGAAAGCCAGC
* *
32751721 GTAAGACCTGTCTAGGACATGACATC
1 GTAAGACCTGTCTGGGACATGGCATC
32751747 AACTTTTATG
Statistics
Matches: 206, Mismatches: 39, Indels: 33
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.00
44 27 0.13
45 3 0.01
46 38 0.18
47 6 0.03
48 59 0.29
49 70 0.34
50 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCGGACTCGATAGATGAAAGCCAGC
Found at i:32751697 original size:142 final size:142
Alignment explanation
Indices: 32751484--32751791 Score: 367
Period size: 142 Copynumber: 2.2 Consensus size: 142
32751474 TACCAGCCAG
* * *
32751484 TGTAAGACATGTCTGGGACAT-GCATCGACATTGAGACAAGAGCTAGTGTAAGACATGTCTAGGA
1 TGTAAGACATGTCTGGGACATGGCATCGACATCGAGACAAGAGCCAGCGTAAGACATGTCTAGGA
* * * * *
32751548 CATGCATCGGTCTCGAGATAT-ACAAG-CTAGTGTAAGACCTGTCTGGGACATGGCGTCAGCTTG
66 CAGGCATCGGTCTCGAGATATGA-AAGTC-AGTGTAAGACCTGTCTAGGACATGACATCAACTTG
*
32751611 T-TGTG-T-ATCAA
129 TATGTGCTAACCAA
* ** * *
32751622 TGTAAGACTTGTCTGGGACATGGCATCGACATCGATAGATGAGAGCCAGCGTAAGACCTGTCTGG
1 TGTAAGACATGTCTGGGACATGGCATCGACATCG--AGACAAGAGCCAGCGTAAGACATGTCTAG
*
32751687 GACACGGCATCGGTCTCGATATATGAAAGTCAGTGTAAGACCTGTCTAGGACATGACATCAACTT
64 GACA-GGCATCGGTCTCGAGATATGAAAGTCAGTGTAAGACCTGTCTAGGACATGACATCAACTT
*
32751752 TTATGTGCTAACCAA
128 GTATGTGCTAACCAA
*
32751767 TGTAAGACCATGTCTAGGACATGGC
1 TGTAAGA-CATGTCTGGGACATGGC
32751792 GTCGGCTTCT
Statistics
Matches: 142, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
138 20 0.14
139 11 0.08
141 27 0.19
142 51 0.36
143 6 0.04
144 1 0.01
145 11 0.08
146 15 0.11
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (142 bp):
TGTAAGACATGTCTGGGACATGGCATCGACATCGAGACAAGAGCCAGCGTAAGACATGTCTAGGA
CAGGCATCGGTCTCGAGATATGAAAGTCAGTGTAAGACCTGTCTAGGACATGACATCAACTTGTA
TGTGCTAACCAA
Found at i:32756314 original size:3 final size:3
Alignment explanation
Indices: 32756306--32756330 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
32756296 CTATAACACC
32756306 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
32756331 GATTTCTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:32757945 original size:13 final size:13
Alignment explanation
Indices: 32757927--32757953 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32757917 TGAATTAGTA
32757927 TGTGTGAAAATTT
1 TGTGTGAAAATTT
32757940 TGTGTGAAAATTT
1 TGTGTGAAAATTT
32757953 T
1 T
32757954 ATCGTTTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:32759103 original size:44 final size:42
Alignment explanation
Indices: 32759041--32759171 Score: 133
Period size: 42 Copynumber: 3.0 Consensus size: 42
32759031 ATCTGATATG
* * *
32759041 TGATTTCATGTACGACCATGTCTTGG-ACGTTGGCATCG-ACTT
1 TGATTTCGTGTAAGACCATGTC-TGGTACATTGGCATCGTA-TT
32759083 ATGATTTACGTGTAAGACCATGTCTGGTACATTGGCATCGTATT
1 -TGATTT-CGTGTAAGACCATGTCTGGTACATTGGCATCGTATT
* * *
32759127 TGATTTCGTGTAAGACCCTATCTGAG-ACAGTGGCATCGATATT
1 TGATTTCGTGTAAGACCATGTCTG-GTACATTGGCATCG-TATT
32759170 TG
1 TG
32759172 GTTACATCTA
Statistics
Matches: 77, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
42 27 0.35
43 22 0.29
44 27 0.35
45 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGGTACATTGGCATCGTATT
Found at i:32759161 original size:42 final size:43
Alignment explanation
Indices: 32759071--32759205 Score: 118
Period size: 43 Copynumber: 3.1 Consensus size: 43
32759061 TCTTGGACGT
* *
32759071 TGGCATCG-ACTTATGATTTACGTGTAAGACCATGTCTGGTACAT
1 TGGCATCGTA-TT-TGATTTACGTGTAAGACCATATCTGGTACAG
*
32759115 TGGCATCGTATTTGATTT-CGTGTAAGACCCTATCTGAG-ACAG
1 TGGCATCGTATTTGATTTACGTGTAAGACCATATCTG-GTACAG
* * * * *
32759157 TGGCATCGATATTTG-GTTACATCTAAGACCACATCTAGG-ACAT
1 TGGCATCG-TATTTGATTTACGTGTAAGACCATATCT-GGTACAG
32759200 TGGCAT
1 TGGCAT
32759206 TGTACAAGCT
Statistics
Matches: 77, Mismatches: 9, Indels: 11
0.79 0.09 0.11
Matches are distributed among these distances:
42 29 0.38
43 36 0.47
44 11 0.14
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (43 bp):
TGGCATCGTATTTGATTTACGTGTAAGACCATATCTGGTACAG
Found at i:32759758 original size:23 final size:24
Alignment explanation
Indices: 32759732--32759777 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
32759722 TGCCATGTGA
* *
32759732 TATGGCTTGGTTTTTGT-TATGAT
1 TATGGCTTGATTTTGGTATATGAT
*
32759755 TATGGTTTGATTTTGGTATATGA
1 TATGGCTTGATTTTGGTATATGA
32759778 AATGTGATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.17, C:0.02, G:0.26, T:0.54
Consensus pattern (24 bp):
TATGGCTTGATTTTGGTATATGAT
Found at i:32764504 original size:46 final size:46
Alignment explanation
Indices: 32764436--32764748 Score: 211
Period size: 46 Copynumber: 6.6 Consensus size: 46
32764426 GTGATTGTGT
*
32764436 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACTAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACTAGATGAAA
* * * * * *
32764482 GCTAGTGTAAAACATGTTTGGGACATGCATAGGCCTCGAGAT-ATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACTAGATGA---AA
* ** * * * **
32764530 GCCAGTGTAAGACATGTCTGGGACATGCATCG-GTATTGGGTCGGGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACTAGAT-GAAA
* * **
32764576 GCTAGTGTAAGACATGTTTGGGACATGCATC-AGCCTCGCGATAGAAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CCACTAGAT-GAAA
* * * *
32764623 GCTAGTGTAAGACCTATTTGGGACATGGCATCGA-CACCGATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCA-C--TAGATGAAA
* * * * * *
32764672 GCCAGTGTAAGACCTATCTGGGACATGGCATCGGCCTCGCTATATGAAA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC-GAC-CACTAGATGAAA
32764721 GCTAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
32764749 GCGTCGGCAT
Statistics
Matches: 204, Mismatches: 47, Indels: 29
0.73 0.17 0.10
Matches are distributed among these distances:
45 1 0.00
46 66 0.32
47 31 0.15
48 35 0.17
49 53 0.26
50 16 0.08
51 1 0.00
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACTAGATGAAA
Found at i:32764600 original size:94 final size:93
Alignment explanation
Indices: 32764439--32764748 Score: 302
Period size: 94 Copynumber: 3.3 Consensus size: 93
32764429 ATTGTGTGCT
32764439 AGTGTAAGACATGTCTGGGACATGCATCGACCACTAGATGAGAGCTAGTGTAAAACATGTTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACTAGATGAGAGCTAGTGTAAAACATGTTTGGG
**
32764504 ACATGCAT-AGGCCTCGAGATATTTAAGCC
66 ACATGCATCA-GCCTCGAGATA-GAAAGCC
** * * * * *
32764533 AGTGTAAGACATGTCTGGGACATGCATCG-GTATTGGGTCGGGAGCTAGTGTAAGACATGTTTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACTAGAT-GAGAGCTAGTGTAAAACATGTTTGG
* *
32764597 GACATGCATCAGCCTCGCGATAGAAAGCT
65 GACATGCATCAGCCTCGAGATAGAAAGCC
* * * * * * * *
32764626 AGTGTAAGACCTATTTGGGACATGGCATCGA-CACCGATAGATGAGAGCCAGTGTAAGACCTATC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACCA-C--TAGATGAGAGCTAGTGTAAAACATGTT
* ** *
32764690 TGGGACATGGCATCGGCCTCGCTATATGAAAGCT
62 TGGGACAT-GCATCAGCCTCGAGATA-GAAAGCC
32764724 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
32764749 GCGTCGGCAT
Statistics
Matches: 178, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
93 28 0.16
94 78 0.44
95 1 0.01
96 25 0.14
97 18 0.10
98 17 0.10
99 11 0.06
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACTAGATGAGAGCTAGTGTAAAACATGTTTGGG
ACATGCATCAGCCTCGAGATAGAAAGCC
Found at i:32764643 original size:47 final size:47
Alignment explanation
Indices: 32764575--32764750 Score: 196
Period size: 49 Copynumber: 3.6 Consensus size: 47
32764565 TTGGGTCGGG
* *
32764575 AGCTAGTGTAAGACATGTTTGGGACAT-GCATCAGCCTCGCGATAGAA
1 AGCTAGTGTAAGACCTATTTGGGACATGGCATC-GCCTCGCGATAGAA
* *
32764622 AGCTAGTGTAAGACCTATTTGGGACATGGCATCGACAC-CGATAGATGA
1 AGCTAGTGTAAGACCTATTTGGGACATGGCATCGCCTCGCGATAGA--A
* * *
32764670 GAGCCAGTGTAAGACCTATCTGGGACATGGCATCGGCCTCGCTATATGAA
1 -AGCTAGTGTAAGACCTATTTGGGACATGGCATC-GCCTCGCGATA-GAA
32764720 AGCTAGTGTAAGACC-ATGTCTGGGACATGGC
1 AGCTAGTGTAAGACCTAT-T-TGGGACATGGC
32764751 GTCGGCATCT
Statistics
Matches: 109, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
46 7 0.06
47 28 0.26
48 8 0.07
49 45 0.41
50 15 0.14
51 4 0.04
52 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (47 bp):
AGCTAGTGTAAGACCTATTTGGGACATGGCATCGCCTCGCGATAGAA
Found at i:32767893 original size:94 final size:94
Alignment explanation
Indices: 32767732--32767919 Score: 340
Period size: 94 Copynumber: 2.0 Consensus size: 94
32767722 GAATGGGCCC
32767732 ACATATATCACCTTGAATACGTTCCAGAAATGTAGGAGATTCAATCCCAACTTTAGTCGATGATG
1 ACATATATCACCTTGAATACGTTCCAGAAATGTAGGAGATTCAATCCCAACTTTAGTCGATGATG
32767797 ATCTAATAATCAATTTTCCTTGAGAATAA
66 ATCTAATAATCAATTTTCCTTGAGAATAA
* * * *
32767826 ACATATATTACCTTGAATACGTTTCAGAAATGTAGGAGATTCAATGCCAACTTTAGTCGGTGATG
1 ACATATATCACCTTGAATACGTTCCAGAAATGTAGGAGATTCAATCCCAACTTTAGTCGATGATG
32767891 ATCTAATAATCAATTTTCCTTGAGAATAA
66 ATCTAATAATCAATTTTCCTTGAGAATAA
32767920 GAAACACAAG
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 90 1.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (94 bp):
ACATATATCACCTTGAATACGTTCCAGAAATGTAGGAGATTCAATCCCAACTTTAGTCGATGATG
ATCTAATAATCAATTTTCCTTGAGAATAA
Found at i:32781979 original size:17 final size:17
Alignment explanation
Indices: 32781929--32781979 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
32781919 TGGAAACATG
*
32781929 ATCTTCGAAGATATGCA
1 ATCTTAGAAGATATGCA
*
32781946 ATCTTAGATATGATATGTA
1 ATCTTAGA-A-GATATGCA
32781965 ATCTTAGAAGATATG
1 ATCTTAGAAGATATG
32781980 ATTTTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (17 bp):
ATCTTAGAAGATATGCA
Found at i:32781979 original size:22 final size:21
Alignment explanation
Indices: 32781951--32782008 Score: 80
Period size: 22 Copynumber: 2.7 Consensus size: 21
32781941 ATGCAATCTT
*
32781951 AGATATGATATGTAATCTTAG
1 AGATATGATTTGTAATCTTAG
32781972 AAGATATGATTTTGTAATCTTAG
1 -AGATATGA-TTTGTAATCTTAG
*
32781995 AGATTTGATTTGTA
1 AGATATGATTTGTA
32782009 GATACCCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 6 0.18
22 15 0.45
23 12 0.36
ACGTcount: A:0.34, C:0.03, G:0.19, T:0.43
Consensus pattern (21 bp):
AGATATGATTTGTAATCTTAG
Found at i:32797789 original size:172 final size:172
Alignment explanation
Indices: 32797448--32797792 Score: 532
Period size: 171 Copynumber: 2.0 Consensus size: 172
32797438 TCCAGCAGGT
32797448 TAAAACTTCATTATCTCGTTTTAAAAAAAAACATTTCAAACATGTCAAAATATCAAGTTAAATTC
1 TAAAACTTCATTATCTCGTTTTAAAAAAAAACATTTCAAACATGTCAAAATATCAAGTTAAATTC
* * *
32797513 TCTTATAAACGTACTCGTTGAAATTATTTTTAATGAAAACCTCAAACTTAATTGCAGTGACAATT
66 TCTTATAAACGTACCCGCTGAAATTATTTTTAATGAAAACCTCAAACTTAATTACAGTGACAATT
* *
32797578 ACTTGAAAACTTAAAGTTTCATTTTGGTCTTTTTAGGAAGAA
131 AATTGAAAACTTAAAGTTTCATTTTGGTCTTTATAGGAAGAA
* * * * *
32797620 TAAAACTTTATTGTCTCCTTTTTAAAAGAAAA-A-TTCAAATATGTCAAAATATCAAGTTAAATT
1 TAAAACTTCATTATCT-CGTTTTAAAAAAAAACATTTCAAACATGTCAAAATATCAAGTTAAATT
*
32797683 CTCTTATAAATGTACCCGCTGAAATTATTTTTAATGAAAACCTCAAACTTAATTTACAGTGACAA
65 CTCTTATAAACGTACCCGCTGAAATTATTTTTAATGAAAACCTCAAACTTAA-TTACAGTGACAA
* **
32797748 TTAATTGAGAACTTAAAGTTTTGTTTTGGTCTTTATAGGAAGAA
129 TTAATTGAAAACTTAAAGTTTCATTTTGGTCTTTATAGGAAGAA
32797792 T
1 T
32797793 TATTTATAAA
Statistics
Matches: 157, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
171 78 0.50
172 66 0.42
173 13 0.08
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.37
Consensus pattern (172 bp):
TAAAACTTCATTATCTCGTTTTAAAAAAAAACATTTCAAACATGTCAAAATATCAAGTTAAATTC
TCTTATAAACGTACCCGCTGAAATTATTTTTAATGAAAACCTCAAACTTAATTACAGTGACAATT
AATTGAAAACTTAAAGTTTCATTTTGGTCTTTATAGGAAGAA
Found at i:32799267 original size:5 final size:5
Alignment explanation
Indices: 32799250--32799283 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
32799240 CTCTTGACTC
*
32799250 TTTTG TTTCG TTTTG TTTTG TTTTG TTTTG TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
32799284 TATTTTTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.00, C:0.03, G:0.18, T:0.79
Consensus pattern (5 bp):
TTTTG
Found at i:32800363 original size:28 final size:29
Alignment explanation
Indices: 32800302--32800370 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 29
32800292 TTCGGGTCAG
* *
32800302 ATGGGCCATATGAATGTGATTTGGGCTTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
*
32800331 ATGGGCCATTTGAATGAGA-TTGGGCCTA
1 ATGGGCCATATGAATGAGATTTGGGCCTA
*
32800359 GTGGGCCATATG
1 ATGGGCCATATG
32800371 CATGTATGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
28 18 0.51
29 17 0.49
ACGTcount: A:0.23, C:0.13, G:0.33, T:0.30
Consensus pattern (29 bp):
ATGGGCCATATGAATGAGATTTGGGCCTA
Found at i:32803941 original size:16 final size:16
Alignment explanation
Indices: 32803920--32803951 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32803910 TCAACAAATC
32803920 TCGAAATGCCGAAAAG
1 TCGAAATGCCGAAAAG
*
32803936 TCGAAATGCTGAAAAG
1 TCGAAATGCCGAAAAG
32803952 CCAAAAGTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.16, G:0.25, T:0.16
Consensus pattern (16 bp):
TCGAAATGCCGAAAAG
Found at i:32804215 original size:29 final size:29
Alignment explanation
Indices: 32804174--32804264 Score: 100
Period size: 29 Copynumber: 3.2 Consensus size: 29
32804164 ACATGGCTTG
32804174 GAAT-TGATTTGGGCCAGATGGGCCATAT
1 GAATGTGATTTGGGCCAGATGGGCCATAT
*
32804202 GAATGTGATTTGGGCTTA-ATGGGCCATAT
1 GAATGTGATTTGGGC-CAGATGGGCCATAT
* *
32804231 GAATGAGA-TTGGGCCTAG-CGGGCCATAT
1 GAATGTGATTTGGGCC-AGATGGGCCATAT
*
32804259 GCATGT
1 GAATGT
32804265 ATGTAGACTT
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
28 24 0.45
29 28 0.53
30 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.33, T:0.29
Consensus pattern (29 bp):
GAATGTGATTTGGGCCAGATGGGCCATAT
Found at i:32808102 original size:29 final size:28
Alignment explanation
Indices: 32808066--32808156 Score: 105
Period size: 28 Copynumber: 3.2 Consensus size: 28
32808056 ACATGGCTTG
*
32808066 GAAT-TGATTCGGGCC-ACATGGGCTATAT
1 GAATGTGATT-GGGCCTA-ATGGGCCATAT
32808094 GAATGTGATTTGGGCCTAATGGGCCATAT
1 GAATGTGA-TTGGGCCTAATGGGCCATAT
* *
32808123 GAATGAGATTGGGCCTAGTGGGCCATAT
1 GAATGTGATTGGGCCTAATGGGCCATAT
*
32808151 GCATGT
1 GAATGT
32808157 ATGTAGACTT
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
28 27 0.49
29 25 0.45
30 3 0.05
ACGTcount: A:0.24, C:0.15, G:0.32, T:0.29
Consensus pattern (28 bp):
GAATGTGATTGGGCCTAATGGGCCATAT
Found at i:32811726 original size:10 final size:10
Alignment explanation
Indices: 32811711--32811736 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
32811701 CCTAGCCAAG
32811711 AAGAGAGAGA
1 AAGAGAGAGA
32811721 AAGAGAGAGA
1 AAGAGAGAGA
32811731 AAGAGA
1 AAGAGA
32811737 ACTTGAGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (10 bp):
AAGAGAGAGA
Found at i:32818967 original size:42 final size:42
Alignment explanation
Indices: 32818920--32819031 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
32818910 GAAGTCCGAA
* ** *
32818920 CTCGTTGAGTGGTCCAGGTTTGTGAT-ATATGTGGCATCTGAG
1 CTCGTTGAGTGGTCCAAGTTCATGATGATATG-AGCATCTGAG
* *
32818962 CTCGTTGAGAGGTCCAAGTTCATTATGGATATGAGCATCTGAG
1 CTCGTTGAGTGGTCCAAGTTCATGAT-GATATGAGCATCTGAG
*
32819005 CTCGTTGAGTGGTCCGAGTTCATGATG
1 CTCGTTGAGTGGTCCAAGTTCATGATG
32819032 GATGCGATAC
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 22 0.37
43 32 0.54
44 5 0.08
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (42 bp):
CTCGTTGAGTGGTCCAAGTTCATGATGATATGAGCATCTGAG
Found at i:32819010 original size:43 final size:43
Alignment explanation
Indices: 32818953--32819034 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
32818943 GATATATGTG
*
32818953 GCATCTGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATATGA
1 GCATCTGAGCTCGTTGAGAGGTCCAAGTTCATGATGGATATGA
* *
32818996 GCATCTGAGCTCGTTGAGTGGTCCGAGTTCATGATGGAT
1 GCATCTGAGCTCGTTGAGAGGTCCAAGTTCATGATGGAT
32819035 GCGATACATG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (43 bp):
GCATCTGAGCTCGTTGAGAGGTCCAAGTTCATGATGGATATGA
Found at i:32826235 original size:47 final size:47
Alignment explanation
Indices: 32826178--32826480 Score: 416
Period size: 47 Copynumber: 6.4 Consensus size: 47
32826168 ATTGATGTAC
* * *
32826178 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
32826225 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
32826274 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
32826321 ACA-TGTGTATGTGTGATAAGGCC-AATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
32826367 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
32826414 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
32826461 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
32826481 TCCCGAAGGG
Statistics
Matches: 237, Mismatches: 14, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
46 43 0.18
47 153 0.65
49 40 0.17
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:32826387 original size:93 final size:93
Alignment explanation
Indices: 32826184--32826459 Score: 401
Period size: 93 Copynumber: 2.9 Consensus size: 93
32826174 GTACAAGTAT
* * * *
32826184 ATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG-AA--ATGTATATGTGTGATAAGGC
*
32826249 CGAATGGCCAATGTGATGAATGTGAACATGT
63 CGAATGGCCAATGTGATGAATGTGAACATGC
* * *
32826280 GTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCC-
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-ATGTATATGTGTGATAAGGCCG
32826344 AATGGCCAATGTGATGAATGTGAACATGC
65 AATGGCCAATGTGATGAATGTGAACATGC
* *
32826373 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA-TGTATATGTGTGATAAGGCCG
*
32826438 AATGGCCAATGTGATGGATGTG
65 AATGGCCAATGTGATGAATGTG
32826460 GAAGTGTATA
Statistics
Matches: 163, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 85 0.52
94 39 0.24
95 2 0.01
96 36 0.22
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.27
Consensus pattern (93 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAATGTATATGTGTGATAAGGCCGA
ATGGCCAATGTGATGAATGTGAACATGC
Found at i:32826459 original size:140 final size:142
Alignment explanation
Indices: 32826189--32826459 Score: 415
Period size: 140 Copynumber: 1.9 Consensus size: 142
32826179 AGTATATATA
* * * *
32826189 TGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGATAAGGCCGAAT
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTACATATAT-CGAGATAAGGCCGAAT
* *
32826254 GGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT
65 GGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT
32826319 GAACATGTGTATG
130 GAACATGTGTATG
*
32826332 TGTGATAAGGCC-AATGGCCAATGTGATGAATGTGAACA-TGCATATAT-GAGATAAGGCCGAAT
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTACATATATCGAGATAAGGCCGAAT
*
32826394 GGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATG
65 GGCCAATGTGATGAATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
32826458 TG
129 TG
32826460 GAAGTGTATA
Statistics
Matches: 118, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
139 1 0.01
140 75 0.64
142 30 0.25
143 12 0.10
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (142 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTACATATATCGAGATAAGGCCGAATG
GCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
AACATGTGTATG
Found at i:32826476 original size:140 final size:141
Alignment explanation
Indices: 32826178--32826480 Score: 409
Period size: 140 Copynumber: 2.1 Consensus size: 141
32826168 ATTGATGTAC
* * * * *
32826178 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATGCGTGA
1 AAGTGTATA-ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTACATATAT-CGAGA
* *
32826243 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAAT
64 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAAT
32826308 GTGATGAATGTGA
129 GTGATGAATGTGA
* *
32826321 ACATGTGTAT-GTGTGATAAGGCC-AATGGCCAATGTGATGAATGTGAACA-TGCATATAT-GAG
1 A-A-GTGTATAATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTACATATATCGAG
32826382 ATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
63 ATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCA
* *
32826446 ATGTGATGGATGTGG
127 ATGTGATGAATGTGA
32826461 AAGTGTATAAATGTGATAAG
1 AAGTGTAT-AATGTGATAAG
32826481 TCCCGAAGGG
Statistics
Matches: 142, Mismatches: 12, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
138 6 0.04
139 2 0.01
140 85 0.60
142 30 0.21
143 13 0.09
144 1 0.01
145 5 0.04
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (141 bp):
AAGTGTATAATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTACATATATCGAGATA
AGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGT
GATGAATGTGA
Found at i:32830951 original size:42 final size:43
Alignment explanation
Indices: 32830904--32831008 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 43
32830894 GAAGTCCGCA
* * * *
32830904 CTCGTTAAGTGGTCTGGGTTTG-TGATATATGTG-GCATCCGAG
1 CTCGTTAAGTGGTCCGAGTTTGCT-ATAGATGCGAGCATCCGAG
* *
32830946 CTCGTTAAGAGGTCCGAGTTTGCTATAGATGCGAGCATCTGAG
1 CTCGTTAAGTGGTCCGAGTTTGCTATAGATGCGAGCATCCGAG
*
32830989 CTCGTTGAGTGGTCCGAGTT
1 CTCGTTAAGTGGTCCGAGTT
32831009 CATGATGGAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 26 0.49
43 27 0.51
ACGTcount: A:0.18, C:0.17, G:0.32, T:0.32
Consensus pattern (43 bp):
CTCGTTAAGTGGTCCGAGTTTGCTATAGATGCGAGCATCCGAG
Found at i:32833401 original size:19 final size:19
Alignment explanation
Indices: 32833366--32833410 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
32833356 AAAACTATCA
* *
32833366 AAAAAT-TATTTATATTAC
1 AAAAATATATCTAAATTAC
32833384 AAAAATATATCTAAATTAC
1 AAAAATATATCTAAATTAC
32833403 AACAAATA
1 AA-AAATA
32833411 AAAAAAACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 6 0.26
19 12 0.52
20 5 0.22
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATATATCTAAATTAC
Found at i:32833500 original size:17 final size:17
Alignment explanation
Indices: 32833457--32833489 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
32833447 ACAAGTAAAC
32833457 AAATAATAACATAATAA
1 AAATAATAACATAATAA
32833474 AAATAATAACATAATA
1 AAATAATAACATAATA
32833490 GTAATCATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (17 bp):
AAATAATAACATAATAA
Found at i:32833765 original size:15 final size:15
Alignment explanation
Indices: 32833745--32833791 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
32833735 ATCTTTATTA
*
32833745 AAAATAATATATAAT
1 AAAATAATAAATAAT
*
32833760 AAAAT-ATAAATTAT
1 AAAATAATAAATAAT
32833774 AAACATAA-AAATAAT
1 AAA-ATAATAAATAAT
32833789 AAA
1 AAA
32833792 TAAAAAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 10 0.37
15 16 0.59
16 1 0.04
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATAATAAATAAT
Found at i:32837687 original size:31 final size:31
Alignment explanation
Indices: 32837649--32837714 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
32837639 CTCATTTCAT
32837649 ACATTTCAAATAGGTACCTATACCACTCACA
1 ACATTTCAAATAGGTACCTATACCACTCACA
*
32837680 ACATTTCAAATAGGTACTTATACCACTCACA
1 ACATTTCAAATAGGTACCTATACCACTCACA
32837711 ACAT
1 ACAT
32837715 GGTTATACTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.39, C:0.27, G:0.06, T:0.27
Consensus pattern (31 bp):
ACATTTCAAATAGGTACCTATACCACTCACA
Found at i:32837978 original size:91 final size:93
Alignment explanation
Indices: 32837863--32838032 Score: 229
Period size: 91 Copynumber: 1.8 Consensus size: 93
32837853 CTATTAAATT
* *
32837863 GATGCCATGTCCTAGACATGGTCTTACACTGACAC-ATC-TTGTAGCCGATGCATGT-CCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACTA-CAATGTAGCCGATGCATGTCCCAGACA
32837925 TGTCTTACACTAGCTCTCGTCTCAATGCC
65 TGTCTTACACTAGCTCTCGTCTCAATGCC
* ** * * *
32837954 GATGCCATGTCCCAGACATTGTCTTATGCTGGCTCTCACAATGTGGCCGATGCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACT-ACAATGTAGCCGATGCATGTCCCAGACA
32838019 TGTCTTACACTAGC
65 TGTCTTACACTAGC
32838033 ACACAAATAA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
91 29 0.43
92 1 0.01
93 16 0.24
94 21 0.31
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACACTACAATGTAGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCTCTCGTCTCAATGCC
Found at i:32842385 original size:39 final size:39
Alignment explanation
Indices: 32842341--32842614 Score: 453
Period size: 39 Copynumber: 7.1 Consensus size: 39
32842331 ATTATATTAT
* * *
32842341 CAGCACAAAGCCTGCGAGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
32842380 CAGCACGAAGCCTACGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
32842419 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
32842458 CAGCACGAAGCCTGTGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
32842497 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
32842536 CAGCACGAAGCCTGC-GGACTTT-GCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
32842573 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
32842612 CAG
1 CAG
32842615 TGTCTTGCAT
Statistics
Matches: 218, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
37 29 0.13
38 14 0.06
39 175 0.80
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:32847033 original size:47 final size:46
Alignment explanation
Indices: 32846943--32847207 Score: 197
Period size: 47 Copynumber: 5.7 Consensus size: 46
32846933 GGGTAAGGTA
* * *
32846943 CCGATGCCATGTCCCAGACATGGTCTTAGACTGGCTCGT-ATCTCAAG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCAAG
* * *
32846990 TCGATGCCATGTCTCAGACATGGTCTTACACTGACTATCATCTCGTAG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGACTATCATCTC-AAG
* * * ***
32847038 CCGATGCATGTCCCGGACAT-ATCTTACACTGGCT-TACATCTTGGGG
1 CCGATGCATGTCCCAGACATGGTCTTACACTGACTAT-CATC-TCAAG
*
32847084 CCGATGCATGTCCCAGACAT-GTCTTACACTAGCAC-A-CGTCTCAATG
1 CCGATGCATGTCCCAGACATGGTCTTACACT-G-ACTATCATCTCAA-G
* ***
32847130 CCGATGTCATGTCCCAGACATGGTCTTACACT-AGCT-TCCATAATGTGG
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGA-CTAT-CAT-CTCAAG
32847178 CCGATGCATGTCCCAGACAT-GTCTTACACT
1 CCGATGCATGTCCCAGACATGGTCTTACACT
32847208 AGCACACACA
Statistics
Matches: 177, Mismatches: 26, Indels: 31
0.76 0.11 0.13
Matches are distributed among these distances:
45 3 0.02
46 67 0.38
47 79 0.45
48 27 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGGTCTTACACTGACTATCATCTCAAG
Found at i:32847087 original size:46 final size:46
Alignment explanation
Indices: 32846991--32847210 Score: 212
Period size: 46 Copynumber: 4.7 Consensus size: 46
32846981 TATCTCAAGT
* *
32846991 CGATGCCATGTCTCAGACATGGTCTTACACT-GAC-TATCATCTCGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTA-CATCTTG-AGGC
* * * *
32847039 CGATGCATGTCCCGGACATATCTTACACTGGCTTACATCTTGGGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTTGAGGC
** * ** *
32847085 CGATGCATGTCCCAGACATGTCTTACACTAGCACACGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTTGAGGC
* ** *
32847131 CGATGTCATGTCCCAGACATGGTCTTACACTAGCTTCCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTTGAGGC
32847179 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
32847211 ACACACAAGT
Statistics
Matches: 142, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
46 72 0.51
47 43 0.30
48 27 0.19
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTTGAGGC
Found at i:32847188 original size:94 final size:92
Alignment explanation
Indices: 32847037--32847214 Score: 275
Period size: 94 Copynumber: 1.9 Consensus size: 92
32847027 TCATCTCGTA
* * **
32847037 GCCGATGCATGTCCCGGACATATCTTACACTGGCTTACATCTTGGGGCCGATGCATGTCCCAGAC
1 GCCGATGCATGTCCCAGACATATCTTACACTAGCTTACATAATGGGGCCGATGCATGTCCCAGAC
32847102 ATGTCTTACACTAGCACACGTCTCAAT
66 ATGTCTTACACTAGCACACGTCTCAAT
* * *
32847129 GCCGATGTCATGTCCCAGACATGGTCTTACACTAGCTTCCATAATGTGGCCGATGCATGTCCCAG
1 GCCGATG-CATGTCCCAGACAT-ATCTTACACTAGCTTACATAATGGGGCCGATGCATGTCCCAG
32847194 ACATGTCTTACACTAGCACAC
64 ACATGTCTTACACTAGCACAC
32847215 ACAAGTGACC
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
92 7 0.09
93 13 0.17
94 57 0.74
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATATCTTACACTAGCTTACATAATGGGGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCACACGTCTCAAT
Found at i:32847203 original size:140 final size:141
Alignment explanation
Indices: 32846943--32847207 Score: 342
Period size: 140 Copynumber: 1.9 Consensus size: 141
32846933 GGGTAAGGTA
* * * ** * *
32846943 CCGATGCCATGTCCCAGACATGGTCTTAGACTGGCTCGTATCTCAAGTCGATGCCATGTCTCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATCTCAAGCCGATGCCATGTCCCAGA
* *
32847008 CATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCGGACATATCTTACACTGGCTT
66 CATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATATCTTACACTGGCTT
32847073 ACATCTTGGGG
131 ACATCTTGGGG
* *
32847084 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACACGTCTCAATGCCGATGTCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATCTCAA-GCCGATGCCATGTCCCAG
* *
32847147 ACATGGTCTTACACT-AGCT-TCCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACACT
65 ACATGGTCTTACACTGA-CTAT-CAT-ATCGTAGCCGATGCATGTCCCAGACATATCTTACACT
32847208 AGCACACACA
Statistics
Matches: 107, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
139 20 0.19
140 80 0.75
141 7 0.07
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (141 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATCTCAAGCCGATGCCATGTCCCAGA
CATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATATCTTACACTGGCTT
ACATCTTGGGG
Found at i:32853583 original size:46 final size:47
Alignment explanation
Indices: 32853448--32853711 Score: 213
Period size: 47 Copynumber: 5.6 Consensus size: 47
32853438 GGTAAGGTGT
* * * * *
32853448 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATATCTC-AAGT
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGC
* *
32853495 CGATGCCATGTCCTAGACATGGTCTTACACTGAC-TATCATCTCGTAGC
1 CGATG-CATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCGTAGC
32853543 CGATGCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTA-GC
* * * * *
32853589 CGATGCATGTCCCAAACA-AGTCTTACACTAGCACT-CGTCTCAGT-GC
1 CGATGCATGTCCCAGACATGGTCTTACACTGGC-TTACATCTC-GTAGC
* * * * *
32853635 CGATGCGATGTCGCAGACATGGTCTTACACTAGCTTCCATAAT-GTGGC
1 CGATGC-ATGTCCCAGACATGGTCTTACACTGGCTTACAT-CTCGTAGC
** *
32853683 TTATGCATGTCCCAGAAAT-GTCTTACACT
1 CGATGCATGTCCCAGACATGGTCTTACACT
32853712 AGCACACATA
Statistics
Matches: 183, Mismatches: 21, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
45 1 0.01
46 74 0.40
47 79 0.43
48 28 0.15
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGC
Found at i:32860598 original size:3 final size:3
Alignment explanation
Indices: 32860590--32860617 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
32860580 TGTTTATGAA
32860590 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
32860618 GTAATTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:32862743 original size:25 final size:25
Alignment explanation
Indices: 32862705--32862753 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
32862695 TTATAATACG
* *
32862705 AAAAAAGACTATTTTGCCCCTAGGT
1 AAAAAAGACCATTTTACCCCTAGGT
*
32862730 AAAAATGACCATTTTACCCCTAGG
1 AAAAAAGACCATTTTACCCCTAGG
32862754 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (25 bp):
AAAAAAGACCATTTTACCCCTAGGT
Found at i:32862929 original size:26 final size:25
Alignment explanation
Indices: 32862884--32862954 Score: 115
Period size: 26 Copynumber: 2.8 Consensus size: 25
32862874 GAGGAAGTGC
*
32862884 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
32862909 AAAAGGGCTTTTGCCCTAGTTTACCA
1 AAAAGGGC-TTTGCCCCAGTTTACCA
32862935 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
32862955 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
25 19 0.45
26 23 0.55
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:32863212 original size:31 final size:31
Alignment explanation
Indices: 32863174--32863277 Score: 190
Period size: 31 Copynumber: 3.4 Consensus size: 31
32863164 TTGTTGTAGT
32863174 AAAGGCTTCGGCCCAATGATATGAATAATGA
1 AAAGGCTTCGGCCCAATGATATGAATAATGA
*
32863205 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAATGATATGAATAATGA
*
32863236 AAAGGCTTCGGCCCAATGATATGAATAATGT
1 AAAGGCTTCGGCCCAATGATATGAATAATGA
32863267 AAAGGCTTCGG
1 AAAGGCTTCGG
32863278 ACCAGTATAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 70 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGAATAATGA
Found at i:32864819 original size:43 final size:44
Alignment explanation
Indices: 32864699--32864820 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 44
32864689 AGCTCATACT
* *
32864699 ATGCCAAC-GTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* *
32864742 ATGCCACTGTCCCAGACAAGGTCTGACACG-AAATCAAATA-CG
1 ATGCCACTGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* *
32864784 ATGCCGA-TGTCCCGGACATGGACTTACACGTAAATCA
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGTAAATCA
32864821 TAAGTCAATG
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
42 28 0.42
43 39 0.58
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (44 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
Found at i:32869153 original size:23 final size:23
Alignment explanation
Indices: 32869123--32869277 Score: 120
Period size: 23 Copynumber: 6.8 Consensus size: 23
32869113 TGATGGACAA
*
32869123 TAAGCTCTAATGAGCTGAAACGG
1 TAAGCTCTAATGAGCTGAAACAG
* * * *
32869146 TAAACTCTATTAAGCTG-AATAG
1 TAAGCTCTAATGAGCTGAAACAG
* *
32869168 TAAGCTCT-ATCGAGTTGAATCAG
1 TAAGCTCTAAT-GAGCTGAAACAG
*
32869191 TAAGCTCCAATGAGCTGAAACAG
1 TAAGCTCTAATGAGCTGAAACAG
* ** *
32869214 TAAGATCTTGTGAGCT-AAATCGG
1 TAAGCTCTAATGAGCTGAAA-CAG
*
32869237 TAAGCT-TCAATGAGTTGAAACAG
1 TAAGCTCT-AATGAGCTGAAACAG
* *
32869260 TAAGCTCTTATAAGCTGA
1 TAAGCTCTAATGAGCTGA
32869278 GTCGATAAGC
Statistics
Matches: 98, Mismatches: 27, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
21 1 0.01
22 18 0.18
23 73 0.74
24 6 0.06
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.27
Consensus pattern (23 bp):
TAAGCTCTAATGAGCTGAAACAG
Found at i:32869287 original size:46 final size:46
Alignment explanation
Indices: 32869191--32869289 Score: 126
Period size: 46 Copynumber: 2.2 Consensus size: 46
32869181 GTTGAATCAG
* * * *
32869191 TAAGCTCCAATGAGCTGAAACAGTAAGATCTTGTGAGCTAAATCGG
1 TAAGCTTCAATGAGCTGAAACAGTAAGATCTTATAAGCTAAATCGA
* * * *
32869237 TAAGCTTCAATGAGTTGAAACAGTAAGCTCTTATAAGCTGAGTCGA
1 TAAGCTTCAATGAGCTGAAACAGTAAGATCTTATAAGCTAAATCGA
32869283 TAAGCTT
1 TAAGCTT
32869290 ATACGAGCTG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.27
Consensus pattern (46 bp):
TAAGCTTCAATGAGCTGAAACAGTAAGATCTTATAAGCTAAATCGA
Found at i:32872139 original size:46 final size:46
Alignment explanation
Indices: 32872034--32872248 Score: 149
Period size: 46 Copynumber: 4.7 Consensus size: 46
32872024 ATATCTATAT
* * * * * *
32872034 CGATTCCATGTCCCAAACATGGTCTTACACTG-ACACATCTCGTA-GT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGCACTCGTCTC-AAGGC
* * *
32872080 CTATG-CATGTCCCAGACATGTCTTACACTG-ACTTATGTCTCGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGCAC-T-CGTCTCAAGGC
* * * *
32872126 CGATG-TATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAATGT
1 CGATGCCATGTCCCAGACATGTCTTACACT-GCACTCGTCTCAAGGC
* *
32872172 CGATGCCATGTCCCAGACATGATCTTACACTG-GCTC-TCACAATGTGGC
1 CGATGCCATGTCCCAGACATG-TCTTACACTGCACTCGTCTCAA---GGC
*
32872220 TGATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCCAGACATGTCTTACACT
32872249 AGCTCACAAT
Statistics
Matches: 137, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
44 13 0.09
45 19 0.14
46 58 0.42
47 31 0.23
48 16 0.12
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGCACTCGTCTCAAGGC
Found at i:32872229 original size:47 final size:44
Alignment explanation
Indices: 32872082--32872253 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 44
32872072 CTCGTAGTCT
* * * * * *
32872082 ATGCATGTCCCAGACATGTCTTACACTGACTTATGTCTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-T-CGTCACAATGTCG
* * * *
32872128 ATGTATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAATGTCG
1 ATGCATGTCCCAGACATGTCTTACACT-G-GCTCGTCACAATGTCG
32872174 ATGCCATGTCCCAGACATGATCTTACACTGGCTC-TCACAATGTGGCTG
1 ATG-CATGTCCCAGACATG-TCTTACACTGGCTCGTCACAATGT--C-G
*
32872222 ATGCATGTCCCAGACATGTCTTACACTAGCTC
1 ATGCATGTCCCAGACATGTCTTACACTGGCTC
32872254 ACAATAGCCC
Statistics
Matches: 108, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
45 8 0.07
46 53 0.49
47 32 0.30
48 15 0.14
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCGTCACAATGTCG
Found at i:32875766 original size:43 final size:43
Alignment explanation
Indices: 32875626--32875788 Score: 154
Period size: 43 Copynumber: 3.8 Consensus size: 43
32875616 ATCAAGATGT
* * *
32875626 GATTACATGTAAGACGATGTCTGGGACATTGGCATTG-TATTGA
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATCGATA-TGA
** *
32875669 GATTATGTGTAAGACCATGTCTAGGACATTGGCATC-ACTAAT-C
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATCGA-T-ATGA
* * * *
32875712 GATTTCGTGTAAGACCCTGTCTAGGACAGTGGCATCGATATGA
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATCGATATGA
* * *
32875755 GATAACATGTAAGACCATATCTAGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTAGGACATTGGCAT
32875789 TGTACGAGCT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
42 8 0.08
43 86 0.88
44 3 0.03
45 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTAGGACATTGGCATCGATATGA
Found at i:32879433 original size:24 final size:24
Alignment explanation
Indices: 32879396--32879441 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
32879386 AGCAATCAAG
32879396 TAACAGGAAACTCG-AGAGAGCTTA
1 TAACAGGAAACTCGTA-AGAGCTTA
**
32879420 TAACAGGATGCTCGTAAGAGCT
1 TAACAGGAAACTCGTAAGAGCT
32879442 ATGGTGTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (24 bp):
TAACAGGAAACTCGTAAGAGCTTA
Found at i:32881417 original size:14 final size:14
Alignment explanation
Indices: 32881398--32881425 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32881388 TCTTGCCTCA
32881398 TTACGTAGATCTTG
1 TTACGTAGATCTTG
32881412 TTACGTAGATCTTG
1 TTACGTAGATCTTG
32881426 CATGCTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (14 bp):
TTACGTAGATCTTG
Found at i:32886506 original size:40 final size:40
Alignment explanation
Indices: 32886451--32886608 Score: 262
Period size: 40 Copynumber: 4.0 Consensus size: 40
32886441 CGGATGATAA
32886451 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
32886491 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* **
32886531 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * *
32886571 CCGGGCTAAGTCCTGAAGGCATTTGAGCGAGTAACTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
32886609 ATCTGGCTAA
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 111 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:32894162 original size:40 final size:40
Alignment explanation
Indices: 32894104--32894287 Score: 296
Period size: 40 Copynumber: 4.6 Consensus size: 40
32894094 GGATGATAAT
*
32894104 CGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTC
*
32894144 CAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTC
32894184 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTC
* * * **
32894224 TGGGCTAAGTCCCGAAGGAAATTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTC
*
32894264 CGGGCTAAGTCCTGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
32894288 AGTGAGTAAC
Statistics
Matches: 132, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 132 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTC
Found at i:32894300 original size:40 final size:40
Alignment explanation
Indices: 32894104--32894320 Score: 283
Period size: 40 Copynumber: 5.5 Consensus size: 40
32894094 GGATGATAAT
* *
32894104 CGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* *
32894144 CAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
*
32894184 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * * *
32894224 TGGGCTAAGTCCCGAAGGAAATTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* * * *
32894264 CGGGCTAAGTCCTGAAGGCATTTGAGTGAGTAACTATAT-
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
* **
32894303 CTGGCTAAACCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
32894321 TACTTGGTTG
Statistics
Matches: 157, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 14 0.09
40 143 0.91
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:32896989 original size:48 final size:48
Alignment explanation
Indices: 32896918--32897104 Score: 209
Period size: 48 Copynumber: 3.9 Consensus size: 48
32896908 GACATTGGGT
* * *
32896918 GATATGTGTGCTAATGTAAGACCATGTCTGGGACATGGCATCGACCAC
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAC
* **
32896966 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC-AGCGTC
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCAC
* * * *
32897014 AATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTCTG-CCAC
1 GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACCAC
* * *
32897062 -ATTATTAAAGCTAGTGTAAGACCATGTCTAGGACATGGCATCG
1 GA-TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
32897105 GTATTGAGAC
Statistics
Matches: 116, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
47 3 0.03
48 113 0.97
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAC
Found at i:32897083 original size:96 final size:96
Alignment explanation
Indices: 32896919--32897103 Score: 284
Period size: 96 Copynumber: 1.9 Consensus size: 96
32896909 ACATTGGGTG
*
32896919 ATATGTGTGCTAATGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAGAGCTAGTGTA
1 ATATGTGTGCTAATGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAAAGCTAGTGTA
* *
32896984 AGACCATGTTTGGGACATGGCATCAGCGTCA
66 AGACCATGTCTAGGACATGGCATCAGCGTCA
* * *
32897015 ATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTCTG-CCAC-ATTATTAAAGCTAGTG
1 ATATGTGTGCTAATGTAAGACCATGTCTGGGACATGGCATC-GACCACGA-TATGAAAGCTAGTG
32897078 TAAGACCATGTCTAGGACATGGCATC
64 TAAGACCATGTCTAGGACATGGCATC
32897104 GGTATTGAGA
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
95 1 0.01
96 79 0.98
97 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (96 bp):
ATATGTGTGCTAATGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAAAGCTAGTGTA
AGACCATGTCTAGGACATGGCATCAGCGTCA
Found at i:32897124 original size:96 final size:95
Alignment explanation
Indices: 32896927--32897152 Score: 248
Period size: 96 Copynumber: 2.4 Consensus size: 95
32896917 TGATATGTGT
* *
32896927 GCTAATGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAAAGCTAGTGTAAGACCATG
* * * *
32896992 TTTGGGACATGGCATCAGCGTCAATATGTGT
66 TCTAGGACATGGCATCAGCGT-AATATGAGA
* *
32897023 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCTG-CCAC-ATTATTAAAGCTAGTGTAAGACCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACCACGA-TATGAAAGCTAGTGTAAGACCA
32897086 TGTCTAGGACATGGCATC-G-GT-AT-TGAGACAA
64 TGTCTAGGACATGGCATCAGCGTAATATGAG---A
* *
32897117 GAACTAGTGTAAGACCATGTCTAGGACATGGAATCG
1 G--CTAGTGTAAGACCATGTCTGGGACATGGCATCG
32897153 GCAATTTACC
Statistics
Matches: 112, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
91 3 0.03
92 2 0.02
94 3 0.03
95 3 0.03
96 100 0.89
97 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (95 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAAAGCTAGTGTAAGACCATG
TCTAGGACATGGCATCAGCGTAATATGAGA
Found at i:32903786 original size:26 final size:26
Alignment explanation
Indices: 32903750--32903819 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
32903740 GGAGGAAGGG
*
32903750 CAAAAAAGGCTTTTGCCCCAGTTTAC
1 CAAAAAGGGCTTTTGCCCCAGTTTAC
*
32903776 CAAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAAGGGCTTTTGCCCCAGTTTAC
*
32903802 C-AACAGGGC-TTTGCCCCA
1 CAAAAAGGGCTTTTGCCCCA
32903820 ATTATTAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 9 0.22
25 7 0.17
26 25 0.61
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (26 bp):
CAAAAAGGGCTTTTGCCCCAGTTTAC
Found at i:32903835 original size:24 final size:24
Alignment explanation
Indices: 32903752--32903835 Score: 71
Period size: 26 Copynumber: 3.4 Consensus size: 24
32903742 AGGAAGGGCA
* * *
32903752 AAAAAGGCTTTTGCCCCAGTTTACC
1 AAAAGGGC-TTTGCCCCAGATTATC
*
32903777 AAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGC-TTTGCCCCAGATTATC
* *
32903803 AACAGGGCTTTGCCCCA-ATTATT
1 AAAAGGGCTTTGCCCCAGATTATC
32903826 AAAAGAGGCT
1 AAAAG-GGCT
32903836 AGGCCTCCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
23 8 0.16
24 13 0.25
25 7 0.14
26 23 0.45
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGATTATC
Found at i:32925578 original size:47 final size:47
Alignment explanation
Indices: 32925524--32925902 Score: 571
Period size: 47 Copynumber: 8.1 Consensus size: 47
32925514 TTAGGATTTT
** * * *
32925524 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
32925571 ATGTGATGAATCTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
32925618 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
32925665 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
32925712 ATGTGATGAATCTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
32925759 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
**
32925806 ATGTGATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
32925853 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
32925900 ATG
1 ATG
32925903 CGAAACGTGT
Statistics
Matches: 308, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 305 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:32925929 original size:46 final size:46
Alignment explanation
Indices: 32925876--32925966 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
32925866 GGAAGTGTAT
* *
32925876 ATATGTGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
* * *
32925922 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATG
32925967 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:32929496 original size:46 final size:45
Alignment explanation
Indices: 32929443--32929618 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
32929433 TATTTGGGCA
32929443 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
32929489 TCCGAACTCGTTGTGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
32929536 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
32929582 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32929619 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:32929600 original size:93 final size:93
Alignment explanation
Indices: 32929439--32929610 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
32929429 AGGATATTTG
* * *
32929439 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGTG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
32929504 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
32929532 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
32929597 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
32929611 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:32933901 original size:12 final size:11
Alignment explanation
Indices: 32933872--32933968 Score: 58
Period size: 12 Copynumber: 8.5 Consensus size: 11
32933862 TATATGCACA
32933872 AAATATAT-AT
1 AAATATATAAT
32933882 ATAATATATAAT
1 A-AATATATAAT
32933894 GAAATATATAAT
1 -AAATATATAAT
32933906 AAA-ATATAAT
1 AAATATATAAT
** *
32933916 TTATAGAT-A-
1 AAATATATAAT
*
32933925 AAATATACAAT
1 AAATATATAAT
32933936 AATATAATATAAT
1 AA-AT-ATATAAT
32933949 GGATAATATATATAT
1 --A-AATATATA-AT
32933964 AAATA
1 AAATA
32933969 AAAATAATAA
Statistics
Matches: 67, Mismatches: 8, Indels: 22
0.69 0.08 0.23
Matches are distributed among these distances:
9 4 0.06
10 11 0.16
11 15 0.22
12 18 0.27
13 8 0.12
14 5 0.07
15 5 0.07
16 1 0.01
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (11 bp):
AAATATATAAT
Found at i:32933964 original size:33 final size:32
Alignment explanation
Indices: 32933901--32933969 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 32
32933891 AATGAAATAT
**
32933901 ATAATAAAATATAATTTATAGATAAAATATACA
1 ATAATAAAATATAATGGATAGATAAAATATA-A
* *
32933934 ATAATATAATATAATGGATA-ATATATATATAA
1 ATAATAAAATATAATGGATAGATA-AAATATAA
32933966 ATAA
1 ATAA
32933970 AAATAATAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
32 8 0.26
33 23 0.74
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.35
Consensus pattern (32 bp):
ATAATAAAATATAATGGATAGATAAAATATAA
Found at i:32934492 original size:10 final size:11
Alignment explanation
Indices: 32934474--32934501 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
32934464 AAACCATTTC
32934474 AGAAAAAAAAA
1 AGAAAAAAAAA
32934485 AGAAAAAAAAA
1 AGAAAAAAAAA
32934496 AGAAAA
1 AGAAAA
32934502 GAGAGAGAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:32945349 original size:5 final size:5
Alignment explanation
Indices: 32945339--32945384 Score: 55
Period size: 5 Copynumber: 10.0 Consensus size: 5
32945329 TAAGTAAATG
*
32945339 TTATA TTATA -T-TA TTATA TTATA TTACA -T-TA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
32945385 ATAAAAGAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
3 3 0.09
4 4 0.11
5 28 0.80
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (5 bp):
TTATA
Found at i:32945357 original size:13 final size:13
Alignment explanation
Indices: 32945342--32945383 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
32945332 GTAAATGTTA
32945342 TATTATATTAT-T
1 TATTATATTATAT
*
32945354 ATATTATATTACAT
1 -TATTATATTATAT
32945368 TATTATATTATAT
1 TATTATATTATAT
32945381 TAT
1 TAT
32945384 AATAAAAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 25 0.96
14 1 0.04
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (13 bp):
TATTATATTATAT
Found at i:32945360 original size:18 final size:18
Alignment explanation
Indices: 32945339--32945384 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
32945329 TAAGTAAATG
32945339 TTATATTATATTATTATA
1 TTATATTATATTATTATA
*
32945357 TTATATTACATTATTATA
1 TTATATTATATTATTATA
32945375 TTATATTATA
1 TTATATTATA
32945385 ATAAAAGAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
TTATATTATATTATTATA
Found at i:32953151 original size:46 final size:48
Alignment explanation
Indices: 32953037--32953201 Score: 163
Period size: 48 Copynumber: 3.5 Consensus size: 48
32953027 TGCGTGCCAA
** * * ** * *
32953037 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATTTAAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCAACATCGAGACATACAAGCTAG
* * * *
32953085 TGTAAGACATGTATGAGACATGCATCAACATTGAGACA-A-GAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCAACATCGAGACATACAAGCTAG
* * * *
32953131 TGTAAGACATGTCTGGGACATTCATCAGCCTCGAGATATACAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCAACATCGAGACATACAAGCTAG
32953179 TGTAAGACCATGTCTGGGACATG
1 TGTAAGA-CATGTCTGGGACATG
32953202 GTGTCGGCAT
Statistics
Matches: 94, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
46 35 0.37
47 1 0.01
48 44 0.47
49 14 0.15
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (48 bp):
TGTAAGACATGTCTGGGACATGCATCAACATCGAGACATACAAGCTAG
Found at i:32957399 original size:16 final size:16
Alignment explanation
Indices: 32957378--32957409 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32957368 TCCTTGCATA
32957378 CACAAACTCTACCTTT
1 CACAAACTCTACCTTT
*
32957394 CACAAACTCTATCTTT
1 CACAAACTCTACCTTT
32957410 GAACATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.34, G:0.00, T:0.34
Consensus pattern (16 bp):
CACAAACTCTACCTTT
Found at i:32961131 original size:22 final size:21
Alignment explanation
Indices: 32961093--32961133 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
32961083 CACTAGACAC
**
32961093 AGGGGCACACGTTCGTGTGGG
1 AGGGGCACACGCCCGTGTGGG
32961114 AGGGGCAACACGCCCGTGTG
1 AGGGGC-ACACGCCCGTGTG
32961134 ACCTATTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.17, C:0.24, G:0.44, T:0.15
Consensus pattern (21 bp):
AGGGGCACACGCCCGTGTGGG
Found at i:32964649 original size:40 final size:40
Alignment explanation
Indices: 32964579--32964756 Score: 243
Period size: 40 Copynumber: 4.5 Consensus size: 40
32964569 AAGCCAGGTA
* * * *
32964579 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
32964618 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
32964658 CCTTCGGCACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
32964698 CCTTTGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
32964738 CCTTCGGGACTTAGACCGG
1 CCTTCGGGACTTAGCCCGG
32964757 TTATCATCCG
Statistics
Matches: 122, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 12 0.10
40 110 0.90
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32972796 original size:39 final size:40
Alignment explanation
Indices: 32972589--32972805 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
32972579 AAGCCAGGTA
* * * *
32972589 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
32972628 CCTTCGGGACATAGCCCGGATGTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
32972668 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
32972708 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
32972748 CCTTCGGGACTTAGCCC-GA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
32972787 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
32972806 TTATCATCTG
Statistics
Matches: 161, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 46 0.29
40 114 0.71
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32972802 original size:119 final size:119
Alignment explanation
Indices: 32972589--32972805 Score: 321
Period size: 119 Copynumber: 1.8 Consensus size: 119
32972579 AAGCCAGGTA
* * * **
32972589 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCGGATGTAGT
1 CCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGAACTAGT
*
32972654 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
32972708 CCTTCGGGACTTAACCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCC-GAACTA
1 CCTTCGGGACTTAA-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACATAGCCCGGAACTA
* *
32972771 GTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
64 GTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
32972806 TTATCATCTG
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
119 50 0.57
120 37 0.43
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (119 bp):
CCTTCGGGACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGAACTAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:32975196 original size:30 final size:30
Alignment explanation
Indices: 32975162--32975222 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
32975152 TCCTTAACTC
32975162 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
32975192 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
32975222 A
1 A
32975223 GGCTTGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:32977133 original size:164 final size:164
Alignment explanation
Indices: 32976862--32977195 Score: 641
Period size: 164 Copynumber: 2.0 Consensus size: 164
32976852 CCATTCATCA
32976862 TCATGCTCATAACACTAAAATAGGCATAAGCGCAACTTACTCGTCACTATCCAACACAATTTACA
1 TCATGCTCATAACACTAAAATAGGCATAAGCGCAACTTACTCGTCACTATCCAACACAATTTACA
32976927 TAGCATATACTAAGCTCACATCTCATGCATGTAACACCCCTTACCCATGTCCGACGCCGAAACAG
66 TAGCATATACTAAGCTCACATCTCATGCATGTAACACCCCTTACCCATGTCCGACGCCGAAACAG
32976992 GGTATGAGCCATTACATGACTTAAACATACACAT
131 GGTATGAGCCATTACATGACTTAAACATACACAT
*
32977026 TCATGCTCATAACACTAAAATAGGCATAAGTGCAACTTACTCGTCACTATCCAACACAATTTACA
1 TCATGCTCATAACACTAAAATAGGCATAAGCGCAACTTACTCGTCACTATCCAACACAATTTACA
* *
32977091 TAGCATATACTAAGCTCACATCTCATGCATGTAACACCCCTTACCCATGTCTGACGTCGAAACAG
66 TAGCATATACTAAGCTCACATCTCATGCATGTAACACCCCTTACCCATGTCCGACGCCGAAACAG
32977156 GGTATGAGCCATTACATGACTTAAACATACACAT
131 GGTATGAGCCATTACATGACTTAAACATACACAT
32977190 TCATGC
1 TCATGC
32977196 AAAAACAGGG
Statistics
Matches: 167, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
164 167 1.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (164 bp):
TCATGCTCATAACACTAAAATAGGCATAAGCGCAACTTACTCGTCACTATCCAACACAATTTACA
TAGCATATACTAAGCTCACATCTCATGCATGTAACACCCCTTACCCATGTCCGACGCCGAAACAG
GGTATGAGCCATTACATGACTTAAACATACACAT
Found at i:32979289 original size:50 final size:50
Alignment explanation
Indices: 32979235--32979375 Score: 185
Period size: 49 Copynumber: 2.8 Consensus size: 50
32979225 AATCTTACAC
*
32979235 ATATCGATGCCGATGCCATATCCCAGATATGGTCTTACACTGGCTCTCAT
1 ATATCGATGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCAT
* ** *
32979285 ATATCGAGGTTG-TGCCATGTCCCAGATATGGTCTTACACTAGCTCTCAT
1 ATATCGATGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCAT
* * * * *
32979334 CTCTCGGTGCCGATGCCATGTCCCAAACATGGTCTTACACTG
1 ATATCGATGCCGATGCCATGTCCCAGATATGGTCTTACACTG
32979376 ACACATATCA
Statistics
Matches: 76, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
49 41 0.54
50 35 0.46
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (50 bp):
ATATCGATGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCAT
Found at i:32982123 original size:30 final size:30
Alignment explanation
Indices: 32982089--32982149 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
32982079 TCCTTAACTC
32982089 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
32982119 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
32982149 A
1 A
32982150 GGCGGAATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:32985780 original size:14 final size:14
Alignment explanation
Indices: 32985757--32985790 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
32985747 TTAACCACTT
*
32985757 TTAACGAAAATCAC
1 TTAACAAAAATCAC
32985771 TTAACAAAAATCAC
1 TTAACAAAAATCAC
32985785 TTAACA
1 TTAACA
32985791 TATTTTGGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.03, T:0.24
Consensus pattern (14 bp):
TTAACAAAAATCAC
Found at i:32985967 original size:239 final size:239
Alignment explanation
Indices: 32985548--32986022 Score: 941
Period size: 239 Copynumber: 2.0 Consensus size: 239
32985538 TCGGACCTAA
32985548 AACATATTTTGGAAAAATTTACATTTTTTCCCCTAAACTTTTTATAATTAAGAATTTACCCCATG
1 AACATATTTTGGAAAAATTTACATTTTTTCCCCTAAACTTTTTATAATTAAGAATTTACCCCATG
*
32985613 GCTCGGAAATTGAAATTTATTAGATTTCTATAAAATTTAAGACATGCTGATCATTTTTCTCTTCT
66 GCTCGGAAATTGAAATTTAATAGATTTCTATAAAATTTAAGACATGCTGATCATTTTTCTCTTCT
32985678 ATGGCAACCTCAAATTCTCACAATTTCATGCTTTTATAAACATTAACAACCTTTACTAATTAACT
131 ATGGCAACCTCAAATTCTCACAATTTCATGCTTTTATAAACATTAACAACCTTTACTAATTAACT
32985743 CGTTTTAACCACTTTTAACGAAAATCACTTAACAAAAATCACTT
196 CGTTTTAACCACTTTTAACGAAAATCACTTAACAAAAATCACTT
32985787 AACATATTTTGGAAAAATTTACATTTTTTCCCCTAAACTTTTTATAATTAAGAATTTACCCCATG
1 AACATATTTTGGAAAAATTTACATTTTTTCCCCTAAACTTTTTATAATTAAGAATTTACCCCATG
32985852 GCTCGGAAATTGAAATTTAATAGATTTCTATAAAATTTAAGACATGCTGATCATTTTTCTCTTCT
66 GCTCGGAAATTGAAATTTAATAGATTTCTATAAAATTTAAGACATGCTGATCATTTTTCTCTTCT
32985917 ATGGCAACCTCAAATTCTCACAATTTCATGCTTTTATAAACATTAACAACCTTTACTAATTAACT
131 ATGGCAACCTCAAATTCTCACAATTTCATGCTTTTATAAACATTAACAACCTTTACTAATTAACT
32985982 CGTTTTAACCACTTTTAACGAAAATCACTTAACAAAAATCA
196 CGTTTTAACCACTTTTAACGAAAATCACTTAACAAAAATCA
32986023 TTCTCCTAAC
Statistics
Matches: 235, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
239 235 1.00
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.38
Consensus pattern (239 bp):
AACATATTTTGGAAAAATTTACATTTTTTCCCCTAAACTTTTTATAATTAAGAATTTACCCCATG
GCTCGGAAATTGAAATTTAATAGATTTCTATAAAATTTAAGACATGCTGATCATTTTTCTCTTCT
ATGGCAACCTCAAATTCTCACAATTTCATGCTTTTATAAACATTAACAACCTTTACTAATTAACT
CGTTTTAACCACTTTTAACGAAAATCACTTAACAAAAATCACTT
Found at i:32986982 original size:46 final size:46
Alignment explanation
Indices: 32986923--32987103 Score: 174
Period size: 46 Copynumber: 3.9 Consensus size: 46
32986913 TTATACTGAA
*
32986923 ACATCATGTAGCCGATGCATGTCCCA-ATCATGTCTTACACTGGCTT
1 ACATCAAGTAGCCGATGCATGTCCCAGA-CATGTCTTACACTGGCTT
* * * *
32986969 ACATCAAGAAGCCGATGCATGTCCCAAACATGTTTTACACTAGCTT
1 ACATCAAGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT
* * *
32987015 TCGTCTCAA-TA-CCGATGCAATGTCCCAGACATGGTCTTACATTGGCTCT
1 AC--ATCAAGTAGCCGATGC-ATGTCCCAGACAT-GTCTTACACTGGCT-T
* *
32987064 -CAT-AATGTGGCTGATGCATGTCCCAGACATGTCTTACACT
1 ACATCAA-GTAGCCGATGCATGTCCCAGACATGTCTTACACT
32987104 AGCGCACAGA
Statistics
Matches: 111, Mismatches: 15, Indels: 18
0.77 0.10 0.12
Matches are distributed among these distances:
45 2 0.02
46 58 0.52
47 28 0.25
48 22 0.20
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (46 bp):
ACATCAAGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT
Found at i:32987061 original size:94 final size:92
Alignment explanation
Indices: 32986934--32987106 Score: 226
Period size: 94 Copynumber: 1.9 Consensus size: 92
32986924 CATCATGTAG
32986934 CCGATGCATGTCCCAATCATGTCTTACACTGGCT-TACATCAA-GAAGCCGATGCATGTCCCAAA
1 CCGATGCATGTCCCAATCATGTCTTACACTGGCTCT-CAT-AATGAAGCCGATGCATGTCCCAAA
*
32986997 CATGTTTTACACTAGCTTTCGTCTCAATA
64 CATGTCTTACACTAGCTTTCGTCTCAATA
* ** * *
32987026 CCGATGCAATGTCCCAGA-CATGGTCTTACATTGGCTCTCATAATGTGGCTGATGCATGTCCCAG
1 CCGATGC-ATGTCCCA-ATCAT-GTCTTACACTGGCTCTCATAATGAAGCCGATGCATGTCCCAA
32987090 ACATGTCTTACACTAGC
63 ACATGTCTTACACTAGC
32987107 GCACAGAAGA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
92 7 0.10
93 13 0.19
94 49 0.70
95 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (92 bp):
CCGATGCATGTCCCAATCATGTCTTACACTGGCTCTCATAATGAAGCCGATGCATGTCCCAAACA
TGTCTTACACTAGCTTTCGTCTCAATA
Done.