Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 104 of 325
Found at i:33353350 original size:18 final size:18
Alignment explanation
Indices: 33353327--33353363 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
33353317 TCCAATGTCA
33353327 GTGTTCATGGTTGAAGCT
1 GTGTTCATGGTTGAAGCT
*
33353345 GTGTTCATTGTTGAAGCT
1 GTGTTCATGGTTGAAGCT
33353363 G
1 G
33353364 ATAGATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.11, G:0.32, T:0.41
Consensus pattern (18 bp):
GTGTTCATGGTTGAAGCT
Found at i:33360048 original size:47 final size:47
Alignment explanation
Indices: 33359980--33360194 Score: 180
Period size: 47 Copynumber: 4.7 Consensus size: 47
33359970 TTCGTGTGTA
*
33359980 CCAGTGTAAGA-CATGTCTGGGACATGCATCGGCCACATTATGAGTG
1 CCAGTGTAAGAGCATGTCTGGGACATGCATCGGCCACATGATGAGTG
* * *
33360026 CCAGTGTAAGAGCATGTCTGGGACATGGCATTGGCGTAGA-GATGAGTG
1 CCAGTGTAAGAGCATGTCTGGGACAT-GCATCGGC-CACATGATGAGTG
* * **
33360074 CCAGTGTAAG-TCATGTCTGGGACATGCATCAGCGTCGATGATGA-TAG
1 CCAGTGTAAGAGCATGTCTGGGACATGCATCGGCCAC-ATGATGAGT-G
* * *
33360121 CCAGTGTAAGATG--TGTCTGGGACATGTATCGGCTA-A-GA-GTCGTG
1 CCAGTGTAAGA-GCATGTCTGGGACATGCATCGGCCACATGATG-AGTG
* * *
33360165 CTAGTGTAAGA-CATGTCCGAGACATGCATC
1 CCAGTGTAAGAGCATGTCTGGGACATGCATC
33360195 AGTACGTATA
Statistics
Matches: 137, Mismatches: 20, Indels: 26
0.75 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 27 0.20
45 2 0.01
46 19 0.14
47 62 0.45
48 24 0.18
49 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (47 bp):
CCAGTGTAAGAGCATGTCTGGGACATGCATCGGCCACATGATGAGTG
Found at i:33360141 original size:94 final size:90
Alignment explanation
Indices: 33359980--33360196 Score: 242
Period size: 94 Copynumber: 2.4 Consensus size: 90
33359970 TTCGTGTGTA
* *
33359980 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCCAGTGTAAGAGCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGTGCCAGTGTAAGAG-ATGTCT
*
33360045 GGGACATGGCATTGGCGT-AGAGATGAGTG
65 GGGACAT-GCATCGGC-TAAGAG-T-AGTG
* **
33360074 CCAGTGTAAGTCATGTCTGGGACATGCATCAGCGTCGATGATGA-TAGCCAGTGTAAGATG-TGT
1 CCAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATGAGT-GCCAGTGTAAGA-GATGT
* *
33360137 CTGGGACATGTATCGGCTAAGAGTCGTG
63 CTGGGACATGCATCGGCTAAGAGTAGTG
* * *
33360165 CTAGTGTAAGACATGTCCGAGACATGCATCAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCAG
33360197 TACGTATATA
Statistics
Matches: 107, Mismatches: 12, Indels: 11
0.82 0.09 0.08
Matches are distributed among these distances:
91 31 0.29
92 2 0.02
93 10 0.09
94 45 0.42
95 18 0.17
96 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (90 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGTGCCAGTGTAAGAGATGTCTG
GGACATGCATCGGCTAAGAGTAGTG
Found at i:33361091 original size:54 final size:53
Alignment explanation
Indices: 33361006--33361139 Score: 144
Period size: 54 Copynumber: 2.5 Consensus size: 53
33360996 GCATTTAAAA
* * * * *
33361006 TTTTAAGTCAGTTTAGTACACGGGTAGGCCACATAGGCGTGTGTCATGGCCGTG
1 TTTTAAGTCAGTTT-GTACACGGGCAAGCCACACAGGCGTGTGTCATAGCCATG
*
33361060 -TTTAATGTCAGTGTTGTACACGGGCAAGCCACACGGGCGTGTGTCATAGCCATG
1 TTTTAA-GTCAGT-TTGTACACGGGCAAGCCACACAGGCGTGTGTCATAGCCATG
* *
33361114 TTTTAAAGTCAATATTGCACACGGGC
1 TTTT-AAGTCAGT-TTGTACACGGGC
33361140 TAAGGGCACG
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
53 5 0.07
54 39 0.58
55 21 0.31
56 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (53 bp):
TTTTAAGTCAGTTTGTACACGGGCAAGCCACACAGGCGTGTGTCATAGCCATG
Found at i:33361237 original size:18 final size:18
Alignment explanation
Indices: 33361163--33361238 Score: 52
Period size: 18 Copynumber: 4.4 Consensus size: 18
33361153 GTTTCCCAAG
* *
33361163 CCACACGGGTATGTGTGA
1 CCACACGAGTGTGTGTGA
* * *
33361181 CCAGACGGGCGTGTGTGA
1 CCACACGAGTGTGTGTGA
* *
33361199 CCACA--AG-GTCT-TTA
1 CCACACGAGTGTGTGTGA
33361213 TCCACACGAGTGTGTGTGA
1 -CCACACGAGTGTGTGTGA
33361232 CCACACG
1 CCACACG
33361239 GTCTTTATCC
Statistics
Matches: 44, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
14 2 0.05
15 8 0.18
16 1 0.02
17 2 0.05
18 29 0.66
19 2 0.05
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.21
Consensus pattern (18 bp):
CCACACGAGTGTGTGTGA
Found at i:33361252 original size:15 final size:15
Alignment explanation
Indices: 33361199--33361254 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
33361189 GCGTGTGTGA
*
33361199 CCACAAGGTCTTTAT
1 CCACACGGTCTTTAT
*
33361214 CCACACGAGTGTGTGTGA-
1 CCACACG-GTCT-T-T-AT
33361232 CCACACGGTCTTTAT
1 CCACACGGTCTTTAT
33361247 CCACACGG
1 CCACACGG
33361255 GCGTGTGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
14 1 0.03
15 15 0.45
16 4 0.12
17 4 0.12
18 8 0.24
19 1 0.03
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.25
Consensus pattern (15 bp):
CCACACGGTCTTTAT
Found at i:33361261 original size:33 final size:33
Alignment explanation
Indices: 33361185--33361261 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 33
33361175 GTGTGACCAG
33361185 ACGGGCGTGTGTGACCACAAGGTCTTTATCCAC
1 ACGGGCGTGTGTGACCACAAGGTCTTTATCCAC
* * *
33361218 ACGAGTGTGTGTGACCACACGGTCTTTATCCAC
1 ACGGGCGTGTGTGACCACAAGGTCTTTATCCAC
33361251 ACGGGCGTGTG
1 ACGGGCGTGTG
33361262 AAGCTTTAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (33 bp):
ACGGGCGTGTGTGACCACAAGGTCTTTATCCAC
Found at i:33367561 original size:47 final size:45
Alignment explanation
Indices: 33367449--33367666 Score: 226
Period size: 47 Copynumber: 4.7 Consensus size: 45
33367439 GATTTCTTGT
* * * * *
33367449 GTGCCAGTGTAAGACATGTATGGGACATGCATCAGCCATATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGA-GATGA
*
33367495 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TAGAGATGA
* * * *
33367543 GTGCCAGTATAAGACATGTTTGGGATATGCATCGGCCTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTAGA-GATGA
*
33367590 -TAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTA-AGA-GTC
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGAGATG-A
* *
33367634 GTGCTAGTGTAAGACATGTCTGAGACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
33367667 AATACGTATA
Statistics
Matches: 146, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 31 0.21
45 2 0.01
46 26 0.18
47 61 0.42
48 23 0.16
49 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (45 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAGAGATGA
Found at i:33368560 original size:55 final size:54
Alignment explanation
Indices: 33368476--33368606 Score: 185
Period size: 55 Copynumber: 2.4 Consensus size: 54
33368466 GCACTTAAAA
* *
33368476 TTTT-AAGTCAGTTTAGTACACGGGTAGGCCACA-GAGGCGTGTGTCATGGCCGTG
1 TTTTAAAGTCAGTTT-GTACACGGGCAGGCCACACG-GGCGTGTGTCATGGCCGCG
33368530 TTTTAAAGTCAGTCTTGTACACGGGCAGGCCACACGGGCGTGTGTCATGGCCGCG
1 TTTTAAAGTCAGT-TTGTACACGGGCAGGCCACACGGGCGTGTGTCATGGCCGCG
*
33368585 TTTTAAAGTCAGTGTTGCACAC
1 TTTTAAAGTCAGT-TTGTACAC
33368607 AGGCTAAGGG
Statistics
Matches: 70, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
54 4 0.06
55 63 0.90
56 3 0.04
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (54 bp):
TTTTAAAGTCAGTTTGTACACGGGCAGGCCACACGGGCGTGTGTCATGGCCGCG
Found at i:33373070 original size:35 final size:35
Alignment explanation
Indices: 33373024--33373112 Score: 144
Period size: 35 Copynumber: 2.5 Consensus size: 35
33373014 TTTGGTTGGG
33373024 AAATGGTCTACTAGCTCTATGGAA-CGACATCACAA
1 AAATGGTCTACTAGCTCTAT-GAAGCGACATCACAA
* *
33373059 AAATGGTCTACTGGCTCTATGAAGCGACATTACAA
1 AAATGGTCTACTAGCTCTATGAAGCGACATCACAA
33373094 AAATGGTCTACTAGCTCTA
1 AAATGGTCTACTAGCTCTA
33373113 CAGAGTGACA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
34 3 0.06
35 47 0.94
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (35 bp):
AAATGGTCTACTAGCTCTATGAAGCGACATCACAA
Found at i:33373133 original size:35 final size:35
Alignment explanation
Indices: 33373093--33373170 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 35
33373083 CGACATTACA
33373093 AAAATGGTCTACTAGCTCTACAGAGTGACACCATG
1 AAAATGGTCTACTAGCTCTACAGAGTGACACCATG
* * * * *
33373128 GAAATGGTCTATTGGCTCTATAGAGTGACACTATG
1 AAAATGGTCTACTAGCTCTACAGAGTGACACCATG
33373163 AAAATGGT
1 AAAATGGT
33373171 TTTTTGACTC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (35 bp):
AAAATGGTCTACTAGCTCTACAGAGTGACACCATG
Found at i:33375888 original size:46 final size:46
Alignment explanation
Indices: 33375836--33375966 Score: 190
Period size: 46 Copynumber: 2.8 Consensus size: 46
33375826 GATGGTTGAG
*
33375836 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * *
33375882 TGTCCGAACTCGTTGAGTTGAGCCCGAGTTCACTCATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * *
33375928 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
33375967 GCGGGTTACA
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:33376016 original size:12 final size:12
Alignment explanation
Indices: 33376001--33376025 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33375991 TATATGTGGC
33376001 ACTTATGTGCAA
1 ACTTATGTGCAA
33376013 ACTTATGTGCAA
1 ACTTATGTGCAA
33376025 A
1 A
33376026 ATTTTACTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (12 bp):
ACTTATGTGCAA
Found at i:33377891 original size:24 final size:24
Alignment explanation
Indices: 33377859--33377906 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
33377849 GCACAAAAGA
33377859 AGGAATGTGCAACATGCTTTAACT
1 AGGAATGTGCAACATGCTTTAACT
33377883 AGGAATGTGCAACATGCTTTAACT
1 AGGAATGTGCAACATGCTTTAACT
33377907 TATTAACACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (24 bp):
AGGAATGTGCAACATGCTTTAACT
Found at i:33382781 original size:42 final size:43
Alignment explanation
Indices: 33382690--33382784 Score: 106
Period size: 42 Copynumber: 2.2 Consensus size: 43
33382680 GTCCGAGACG
* *
33382690 TGGTCTTACATGTAATCAAACATCGATGCCACTGTCCTAGACA
1 TGGTCTTACATGGAATCAAACATCGATGCCACTGTCCTAAACA
* * *
33382733 GGGTCTTACATGGAATCAAATA-CGATGTCGA-TGT-CTCAAACA
1 TGGTCTTACATGGAATCAAACATCGATG-CCACTGTCCT-AAACA
33382775 TGGTCTTACA
1 TGGTCTTACA
33382785 CATAAAACAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
41 2 0.05
42 21 0.48
43 21 0.48
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (43 bp):
TGGTCTTACATGGAATCAAACATCGATGCCACTGTCCTAAACA
Found at i:33396117 original size:40 final size:40
Alignment explanation
Indices: 33396055--33396281 Score: 319
Period size: 40 Copynumber: 5.7 Consensus size: 40
33396045 CAATTGAGGA
* *
33396055 TTATATCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
33396095 TTATTTTCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * * *
33396135 TTATTTTCGAGTTAAGTCTCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
33396175 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* * * *
33396215 CTATTTCCAGGTTAAGTCCCGAAGGCATTTGCGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
** * *
33396255 TTACATCCGGGCTAAATCCCGAAGGCA
1 TTATTTCCGGGTTAAGTCCCGAAGGCA
33396282 ATTGGGTTGG
Statistics
Matches: 167, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 167 1.00
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.34
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:33397719 original size:42 final size:43
Alignment explanation
Indices: 33397617--33397775 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
33397607 AGCATATACA
* * * * ** *
33397617 ATGCCAACGTCCCAGACGTGGTCTTACA-TGTAATTAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACAGAAAACAAA-AGCG
* * * * *
33397660 ATGCCACTGTCCTAGACAGGGTCTTACAC-GAAATCAGATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACAGAAAACA-AAAGCG
* * *
33397702 ATGCCGATGTCTCAGACATGGTCTTACACATAAAACAAAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACAGAAAACAAAAG-CG
33397746 ATGCCAATGTCCCAGACATGGTCTTACACA
1 ATGCCAATGTCCCAGACATGGTCTTACACA
33397776 ATAACATATA
Statistics
Matches: 93, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 28 0.30
43 34 0.37
44 31 0.33
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACAGAAAACAAAAGCG
Found at i:33397762 original size:44 final size:43
Alignment explanation
Indices: 33397617--33397775 Score: 144
Period size: 44 Copynumber: 3.7 Consensus size: 43
33397607 AGCATATACA
* * ** * *
33397617 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATTA-AACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAA-AACAAAATCG
* * * * * *
33397660 ATGCCACTGTCCTAGACAGGGTCTTACAC-GAAATC-AGATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAAAACAAAAT-CG
* *
33397702 ATGCCGATGTCTCAGACATGGTCTTACACATAAAACAAAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACATAAAACAAAA-TCG
33397746 ATGCCAATGTCCCAGACATGGTCTTACACA
1 ATGCCAATGTCCCAGACATGGTCTTACACA
33397776 ATAACATATA
Statistics
Matches: 91, Mismatches: 20, Indels: 9
0.76 0.17 0.08
Matches are distributed among these distances:
41 3 0.03
42 28 0.31
43 27 0.30
44 32 0.35
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACATAAAACAAAATCG
Found at i:33399998 original size:20 final size:20
Alignment explanation
Indices: 33399958--33399998 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
33399948 GTATGTATTT
33399958 TGAAGTTTCTTGATAGATTA
1 TGAAGTTTCTTGATAGATTA
*
33399978 TGAATGTTTGTTGATAG-TTA
1 TGAA-GTTTCTTGATAGATTA
33399998 T
1 T
33399999 ACAAGTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.27, C:0.02, G:0.22, T:0.49
Consensus pattern (20 bp):
TGAAGTTTCTTGATAGATTA
Found at i:33400006 original size:20 final size:21
Alignment explanation
Indices: 33399960--33400006 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
33399950 ATGTATTTTG
33399960 AAGTTTCTTGATAGATTATGA
1 AAGTTTCTTGATAGATTATGA
* *
33399981 ATGTTTGTTGATAG-TTAT-A
1 AAGTTTCTTGATAGATTATGA
33400000 CAAGTTT
1 -AAGTTT
33400007 TGTTAAGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 1 0.05
20 9 0.41
21 12 0.55
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.47
Consensus pattern (21 bp):
AAGTTTCTTGATAGATTATGA
Found at i:33409998 original size:31 final size:31
Alignment explanation
Indices: 33409960--33410020 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
33409950 AAAGCCAAAC
*
33409960 CAAATAAGCACTTTAACAAGTAGCAGGCAAT
1 CAAATAAGCACTTTAACAAGTAGCAAGCAAT
33409991 CAAATAAGCACTTTAACAAGTAGCAAGCAA
1 CAAATAAGCACTTTAACAAGTAGCAAGCAA
33410021 CTTTCACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.48, C:0.20, G:0.15, T:0.18
Consensus pattern (31 bp):
CAAATAAGCACTTTAACAAGTAGCAAGCAAT
Found at i:33413114 original size:45 final size:45
Alignment explanation
Indices: 33413018--33413328 Score: 414
Period size: 45 Copynumber: 7.0 Consensus size: 45
33413008 CTGAATTCAT
* * * * *
33413018 TCACCGGCATT-TTGCGTGCTAGGCTCGAA-GCTC-AATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* **
33413060 TCACCGACATTATAGCCTGCTAGGCTCAAAGGCTTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
33413105 TCACCGACATTATAGCCTGCTAGGCTCAAAGGCCCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCC-GAATAGTATC
33413151 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
33413196 TCATCGGCATTATAGCCTGCTTGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * * *
33413241 TTACCGGCATTATAGCCTGCTATGTTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
33413286 TCACCGGTATTATAGCCTCCTAGGCTCAAAGGCCCAAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
33413329 CTGTACGATA
Statistics
Matches: 241, Mismatches: 23, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
42 10 0.04
43 15 0.06
44 3 0.01
45 168 0.70
46 45 0.19
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:33414170 original size:25 final size:25
Alignment explanation
Indices: 33414142--33414209 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
33414132 ACTTATTCGG
*
33414142 AAATAATAAGGGCAAATTTAACCGA
1 AAATAATAAGAGCAAATTTAACCGA
* *
33414167 AAATATTAAGAGCAAATTTAACCGG
1 AAATAATAAGAGCAAATTTAACCGA
* * *
33414192 AATTATTAAGAACAAATT
1 AAATAATAAGAGCAAATT
33414210 AACAAGCTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.51, C:0.10, G:0.13, T:0.25
Consensus pattern (25 bp):
AAATAATAAGAGCAAATTTAACCGA
Found at i:33420822 original size:45 final size:45
Alignment explanation
Indices: 33420712--33421021 Score: 430
Period size: 45 Copynumber: 7.0 Consensus size: 45
33420702 CTGAATTCAT
* * * *
33420712 TCACCGGTATT-TTGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
* **
33420754 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCTAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* *
33420799 TCACCGGCATTATACCCTACTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
33420844 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCTCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
33420889 TCACCGGAATTATAACCTGCTAGGCTCAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
33420934 TCACCAGCATTATAGCCTGCTAGGCTTAAAGGCCCGAATAGTATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
33420979 TCACCGGAATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTA
33421022 CTGTACGATA
Statistics
Matches: 240, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
42 10 0.04
43 17 0.07
44 3 0.01
45 209 0.87
46 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:33421867 original size:25 final size:25
Alignment explanation
Indices: 33421839--33421934 Score: 147
Period size: 25 Copynumber: 3.8 Consensus size: 25
33421829 GTAACTTATT
* *
33421839 CGGAAATAATAAGGGCAAATTTAAC
1 CGGAAATATTAAGAGCAAATTTAAC
*
33421864 CGGAAATATTAAGAGCAAATTTAAT
1 CGGAAATATTAAGAGCAAATTTAAC
33421889 CGGAAATATTAAGAGCAAATTTAAC
1 CGGAAATATTAAGAGCAAATTTAAC
* *
33421914 CGGAAATATTGAGAACAAATT
1 CGGAAATATTAAGAGCAAATT
33421935 AACAAGCTGA
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 65 1.00
ACGTcount: A:0.48, C:0.10, G:0.18, T:0.24
Consensus pattern (25 bp):
CGGAAATATTAAGAGCAAATTTAAC
Found at i:33421920 original size:12 final size:12
Alignment explanation
Indices: 33421855--33421920 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
33421845 TAATAAGGGC
33421855 AAATTTAACCGG
1 AAATTTAACCGG
** *
33421867 AAATATTAAGAGC
1 AAAT-TTAACCGG
*
33421880 AAATTTAATCGG
1 AAATTTAACCGG
** *
33421892 AAATATTAAGAGC
1 AAAT-TTAACCGG
33421905 AAATTTAACCGG
1 AAATTTAACCGG
33421917 AAAT
1 AAAT
33421921 ATTGAGAACA
Statistics
Matches: 40, Mismatches: 12, Indels: 4
0.71 0.21 0.07
Matches are distributed among these distances:
12 22 0.55
13 18 0.45
ACGTcount: A:0.48, C:0.11, G:0.15, T:0.26
Consensus pattern (12 bp):
AAATTTAACCGG
Found at i:33426115 original size:49 final size:49
Alignment explanation
Indices: 33426000--33426173 Score: 249
Period size: 49 Copynumber: 3.5 Consensus size: 49
33425990 TGAGGTCGCA
* * **
33426000 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATT-GGTCACG
33426050 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACG
* * * *
33426099 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACG
**
33426148 TGTGTAGTACTATTTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
33426174 TGCTTACCAG
Statistics
Matches: 113, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
49 75 0.66
50 38 0.34
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.32
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACG
Found at i:33433566 original size:10 final size:10
Alignment explanation
Indices: 33433553--33433581 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
33433543 CCAAGAACTC
33433553 TTGAAGGGAA
1 TTGAAGGGAA
33433563 TTGAAGGGAA
1 TTGAAGGGAA
33433573 TTGAAGGGA
1 TTGAAGGGA
33433582 GATCTTCAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.41, T:0.21
Consensus pattern (10 bp):
TTGAAGGGAA
Found at i:33437219 original size:19 final size:19
Alignment explanation
Indices: 33437180--33437219 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
33437170 GCTTCGAGGT
* * *
33437180 AATAAGATAGAATAGAAAA
1 AATAAGAAAAAATAAAAAA
33437199 AATAAGAAAAAATAAAAAA
1 AATAAGAAAAAATAAAAAA
33437218 AA
1 AA
33437220 GAGAGATGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (19 bp):
AATAAGAAAAAATAAAAAA
Found at i:33439090 original size:20 final size:20
Alignment explanation
Indices: 33439054--33439092 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
33439044 TTGATAAATG
*
33439054 TTTTGATATAAAGATGATGT
1 TTTTGATATAAACATGATGT
33439074 TTTTGA-ATAAAACATGATG
1 TTTTGATAT-AAACATGATG
33439093 AGTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.38, C:0.03, G:0.18, T:0.41
Consensus pattern (20 bp):
TTTTGATATAAACATGATGT
Found at i:33443407 original size:20 final size:20
Alignment explanation
Indices: 33443384--33443449 Score: 114
Period size: 20 Copynumber: 3.3 Consensus size: 20
33443374 GCCCACATGA
* *
33443384 GCGTGTCCCAAGCCACACTG
1 GCGTGTCCCAAACCACACGG
33443404 GCGTGTCCCAAACCACACGG
1 GCGTGTCCCAAACCACACGG
33443424 GCGTGTCCCAAACCACACGG
1 GCGTGTCCCAAACCACACGG
33443444 GCGTGT
1 GCGTGT
33443450 GACCCCTGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.21, C:0.38, G:0.27, T:0.14
Consensus pattern (20 bp):
GCGTGTCCCAAACCACACGG
Found at i:33449751 original size:50 final size:52
Alignment explanation
Indices: 33449695--33449831 Score: 181
Period size: 51 Copynumber: 2.7 Consensus size: 52
33449685 ATCTGGTAGG
*
33449695 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTGAAGCCATCAGATACA
* * ** * *
33449745 CGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTATCAGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTGAAGCCATCAGATACA
*
33449796 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
33449832 CACAATAGAT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 34 0.46
51 38 0.51
52 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (52 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTGAAGCCATCAGATACA
Found at i:33449823 original size:51 final size:50
Alignment explanation
Indices: 33449683--33449831 Score: 192
Period size: 50 Copynumber: 3.0 Consensus size: 50
33449673 ATAGCCAAAG
*
33449683 CTATCTGGTAGGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
* * * * *
33449733 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAA
1 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA
* * *
33449783 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCT
1 -CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCT
33449832 CACAATAGAT
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
49 1 0.01
50 42 0.51
51 38 0.46
52 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (50 bp):
CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
Found at i:33452631 original size:15 final size:15
Alignment explanation
Indices: 33452605--33452643 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
33452595 AACAGAGAGG
33452605 CCAAGAATAAAGAAAT
1 CCAAG-ATAAAGAAAT
33452621 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
*
33452636 CCATGATA
1 CCAAGATA
33452644 CGAGAATCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.56, C:0.15, G:0.13, T:0.15
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:33455479 original size:50 final size:49
Alignment explanation
Indices: 33455367--33455542 Score: 235
Period size: 50 Copynumber: 3.5 Consensus size: 49
33455357 CTGGTAGGCA
* *
33455367 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
* ** *
33455416 TAGTAGCCTGCACTTAGTACTACACACATGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACG
* * * *
33455466 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGGTACACG
33455517 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
33455543 TGCGACCTCA
Statistics
Matches: 110, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
49 30 0.27
50 45 0.41
51 35 0.32
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
Found at i:33459834 original size:27 final size:27
Alignment explanation
Indices: 33459804--33459931 Score: 184
Period size: 27 Copynumber: 4.7 Consensus size: 27
33459794 CGTACCTGAA
*
33459804 CCCTCATGTGATAAAATGACAATTTTG
1 CCCTTATGTGATAAAATGACAATTTTG
*
33459831 CCCTTATGTGATAAAATGACGATTTTG
1 CCCTTATGTGATAAAATGACAATTTTG
* ***
33459858 CCCTCATGTGATAAAATGGTGATTTTG
1 CCCTTATGTGATAAAATGACAATTTTG
* *
33459885 CCCTTATGTGATAAAAAGACAATTTTA
1 CCCTTATGTGATAAAATGACAATTTTG
33459912 CCCTTATGTGATAAAATGAC
1 CCCTTATGTGATAAAATGAC
33459932 TGAAATACCC
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 89 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACAATTTTG
Found at i:33460350 original size:18 final size:18
Alignment explanation
Indices: 33460327--33460377 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
33460317 TCTATTTGCA
33460327 TACTGCACTGATTACCGT
1 TACTGCACTGATTACCGT
* * **
33460345 TACTGCATTGATCATGGT
1 TACTGCACTGATTACCGT
*
33460363 TACTACACTGATTAC
1 TACTGCACTGATTAC
33460378 TATTACTGAA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (18 bp):
TACTGCACTGATTACCGT
Found at i:33460413 original size:35 final size:35
Alignment explanation
Indices: 33460369--33460465 Score: 133
Period size: 35 Copynumber: 2.8 Consensus size: 35
33460359 TGGTTACTAC
33460369 ACTGATTACTATTACTGAAATGGGCTAAAACCCAA
1 ACTGATTACTATTACTGAAATGGGCTAAAACCCAA
* * * *
33460404 ATTGATTACTATTACTGAAATGGGATAAAACCTAG
1 ACTGATTACTATTACTGAAATGGGCTAAAACCCAA
* *
33460439 ACTG-CTACTGTTACTGAAATGGGCTAA
1 ACTGATTACTATTACTGAAATGGGCTAA
33460466 GGCCTAGATT
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
34 20 0.37
35 34 0.63
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (35 bp):
ACTGATTACTATTACTGAAATGGGCTAAAACCCAA
Found at i:33460458 original size:34 final size:34
Alignment explanation
Indices: 33460375--33460497 Score: 138
Period size: 34 Copynumber: 3.6 Consensus size: 34
33460365 CTACACTGAT
* * *
33460375 TACTATTACTGAAATGGGCTAAAACCCAAATTGAT
1 TACTATTACTGAAATGGGCTAAAACCTAGATTG-C
* *
33460410 TACTATTACTGAAATGGGATAAAACCTAGACTGC
1 TACTATTACTGAAATGGGCTAAAACCTAGATTGC
* **
33460444 TACTGTTACTGAAATGGGCTAAGGCCTAGATTGC
1 TACTATTACTGAAATGGGCTAAAACCTAGATTGC
* * *
33460478 CACTGTTACTGATATGGGCT
1 TACTATTACTGAAATGGGCT
33460498 TAGGCCCTAC
Statistics
Matches: 76, Mismatches: 12, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
34 47 0.62
35 29 0.38
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (34 bp):
TACTATTACTGAAATGGGCTAAAACCTAGATTGC
Found at i:33470107 original size:26 final size:25
Alignment explanation
Indices: 33470078--33470142 Score: 67
Period size: 27 Copynumber: 2.5 Consensus size: 25
33470068 AAAATCATCT
33470078 CTTTCAAAAACCAAGGTTTAGAAAAA
1 CTTTCAAAAACCAA-GTTTAGAAAAA
* * * *
33470104 CTTTTGAAAATCCAATTTTTGAAAAA
1 C-TTTCAAAAACCAAGTTTAGAAAAA
*
33470130 TTTTCAAAAACCA
1 CTTTCAAAAACCA
33470143 TTCCACAGCT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
25 10 0.32
26 10 0.32
27 11 0.35
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (25 bp):
CTTTCAAAAACCAAGTTTAGAAAAA
Found at i:33475563 original size:10 final size:11
Alignment explanation
Indices: 33475550--33475582 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
33475540 TCCATTTATT
33475550 CACATTTTACCA
1 CACATTTTA-CA
33475562 CACATTTTACA
1 CACATTTTACA
33475573 -ACATTTTACA
1 CACATTTTACA
33475583 AATAGGTCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 2 0.10
12 9 0.43
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.36
Consensus pattern (11 bp):
CACATTTTACA
Found at i:33475567 original size:12 final size:12
Alignment explanation
Indices: 33475550--33475581 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
33475540 TCCATTTATT
33475550 CACATTTTACCA
1 CACATTTTACCA
33475562 CACATTTTA-CA
1 CACATTTTACCA
33475573 -ACATTTTAC
1 CACATTTTAC
33475582 AAATAGGTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 8 0.42
11 2 0.11
12 9 0.47
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (12 bp):
CACATTTTACCA
Found at i:33477841 original size:7 final size:7
Alignment explanation
Indices: 33477829--33477877 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
33477819 CCTTAAAAAA
33477829 AAGTAAT
1 AAGTAAT
33477836 AAGTAAT
1 AAGTAAT
33477843 AAGTAAT
1 AAGTAAT
33477850 AAAGT-A-
1 -AAGTAAT
*
33477856 AA-TATT
1 AAGTAAT
33477862 AAGTAAT
1 AAGTAAT
33477869 AAGTAAT
1 AAGTAAT
33477876 AA
1 AA
33477878 AGAAAAAGCA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
4 1 0.03
5 2 0.06
6 2 0.06
7 27 0.75
8 4 0.11
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (7 bp):
AAGTAAT
Found at i:33482055 original size:37 final size:37
Alignment explanation
Indices: 33482005--33482083 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
33481995 TTATTACGAA
* * *
33482005 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
33482042 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
33482079 GTCTT
1 GTCTT
33482084 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:33482280 original size:47 final size:47
Alignment explanation
Indices: 33482202--33482708 Score: 836
Period size: 47 Copynumber: 10.7 Consensus size: 47
33482192 CCCTTCGGGA
* * * * * *
33482202 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
33482249 CCTGTCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33482296 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33482343 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33482390 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33482437 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33482484 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33482531 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
33482580 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33482627 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
33482674 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
33482709 AGAATCCTAA
Statistics
Matches: 436, Mismatches: 21, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 388 0.89
49 47 0.11
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33485400 original size:23 final size:24
Alignment explanation
Indices: 33485372--33485432 Score: 81
Period size: 23 Copynumber: 2.6 Consensus size: 24
33485362 AAGCTGATGG
*
33485372 ACAGTAAGCT-TTATTGAGCTGAA
1 ACAGTAAGCTCTTATCGAGCTGAA
*
33485395 ACAGTAAGCTCTGA-CGAGCTGAA
1 ACAGTAAGCTCTTATCGAGCTGAA
*
33485418 ACTGTAAGCTCTTAT
1 ACAGTAAGCTCTTAT
33485433 GGGTTGATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 30 0.94
24 2 0.06
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (24 bp):
ACAGTAAGCTCTTATCGAGCTGAA
Found at i:33490441 original size:23 final size:23
Alignment explanation
Indices: 33490415--33490461 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
33490405 TCCTTAAGGG
33490415 TATGAACAAGCGTTTCCCTTTTT
1 TATGAACAAGCGTTTCCCTTTTT
* *
33490438 TATGAATAAGGGTTTCCCTTTTT
1 TATGAACAAGCGTTTCCCTTTTT
33490461 T
1 T
33490462 CACTGCACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.47
Consensus pattern (23 bp):
TATGAACAAGCGTTTCCCTTTTT
Found at i:33497956 original size:26 final size:26
Alignment explanation
Indices: 33497894--33497959 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
33497884 ACTGATTTTG
* *
33497894 CACACTTAGTGCTTAGAAATTAATTCA
1 CACACTTAGTGCTTA-AAATCAACTCA
*
33497921 CACACATAGTGCTT-AAATCCAACTCA
1 CACACTTAGTGCTTAAAAT-CAACTCA
33497947 CACACTTAGTGCT
1 CACACTTAGTGCT
33497960 CAGTATCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.12
26 17 0.50
27 13 0.38
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.29
Consensus pattern (26 bp):
CACACTTAGTGCTTAAAATCAACTCA
Found at i:33502387 original size:27 final size:27
Alignment explanation
Indices: 33502345--33502427 Score: 105
Period size: 27 Copynumber: 3.1 Consensus size: 27
33502335 GTTGTTAAGG
33502345 CCTCGATTTGTAAAATTATCGAAATAC
1 CCTCGATTTGTAAAATTATCGAAATAC
* *
33502372 CCTTGATTTGTAAAATTATTGAAATA-
1 CCTCGATTTGTAAAATTATCGAAATAC
* * *
33502398 CCTCCAGTTTGTAAAATGATCGTAATAC
1 CCTCGA-TTTGTAAAATTATCGAAATAC
33502426 CC
1 CC
33502428 ATGTAAGGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
26 4 0.09
27 41 0.87
28 2 0.04
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (27 bp):
CCTCGATTTGTAAAATTATCGAAATAC
Found at i:33502438 original size:27 final size:27
Alignment explanation
Indices: 33502408--33502579 Score: 256
Period size: 27 Copynumber: 6.4 Consensus size: 27
33502398 CCTCCAGTTT
* *
33502408 GTAAAATGATCGTAATACCCATGTAAG
1 GTAAAATGACCGTAATACCCCTGTAAG
33502435 GTAAAATGACCGTAATACCCCTGTAAG
1 GTAAAATGACCGTAATACCCCTGTAAG
*
33502462 GTAAAATGACCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAAG
*
33502489 GTAAAATGACCGTAATGCCCCTG-AAGG
1 GTAAAATGACCGTAATACCCCTGTAA-G
* *
33502516 GTAAAATGACCGTAATACCCCTGCAGG
1 GTAAAATGACCGTAATACCCCTGTAAG
* *
33502543 GTAAAATGACCGTAATACCCCTATATG
1 GTAAAATGACCGTAATACCCCTGTAAG
33502570 GTAAAATGAC
1 GTAAAATGAC
33502580 AATTATGCCT
Statistics
Matches: 133, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
26 1 0.01
27 131 0.98
28 1 0.01
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAAG
Found at i:33503032 original size:33 final size:33
Alignment explanation
Indices: 33502957--33503046 Score: 99
Period size: 33 Copynumber: 2.7 Consensus size: 33
33502947 TTAGGCCCAC
*
33502957 ACTGTTACTGTATAAGGCTAAAGCCTAGACTAT
1 ACTGTTACTGTATAGGGCTAAAGCCTAGACTAT
** * * *
33502990 TTTGTTACTGTATAGGGTTAAGGCCTAGACTGT
1 ACTGTTACTGTATAGGGCTAAAGCCTAGACTAT
* * *
33503023 ACTGATACTGGATAGGGCTCAAGC
1 ACTGTTACTGTATAGGGCTAAAGC
33503047 TCAGACTGTT
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (33 bp):
ACTGTTACTGTATAGGGCTAAAGCCTAGACTAT
Found at i:33505274 original size:39 final size:39
Alignment explanation
Indices: 33505220--33505379 Score: 275
Period size: 39 Copynumber: 4.1 Consensus size: 39
33505210 ATTACCAGCA
* * *
33505220 CCAGCACAAAGCCTGCGGGACTTTAGCCAGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
33505259 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
33505298 CCAACACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
33505337 CCAGCACGAAGCCTGCGGGACTTTAGCCCGAATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
33505376 CCAG
1 CCAG
33505380 TGTCTTGCAT
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:33510972 original size:39 final size:39
Alignment explanation
Indices: 33510918--33511077 Score: 275
Period size: 39 Copynumber: 4.1 Consensus size: 39
33510908 ATTACCAGCA
* *
33510918 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
33510957 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
33510996 CCAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
**
33511035 CCAGCACGAAGCCTGTAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
33511074 CCAG
1 CCAG
33511078 TGTCTTGCAT
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:33519585 original size:39 final size:40
Alignment explanation
Indices: 33519484--33519668 Score: 177
Period size: 40 Copynumber: 4.7 Consensus size: 40
33519474 TCGAATGATG
* * * *
33519484 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGTCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
33519523 ATCCGGACTAAGAT-CCGAAGGCATTTGTAG-GAGTTACTAAT
1 -TCCGGTCTAAG-TCCCGAAGGCATTTGT-GCGAGTTACTAAT
* *
33519564 TCCGGTCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGTCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
33519603 TCCGGGT-TAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCC-GGTCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
33519642 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGTCTAAGTCCCGAAGGCATTTG
33519669 AACGAGCAGT
Statistics
Matches: 123, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
38 1 0.01
39 33 0.27
40 80 0.65
41 8 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGTCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:33530419 original size:22 final size:23
Alignment explanation
Indices: 33530388--33530430 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
33530378 TCTAAGCTTA
33530388 CAATTACAAG-ATATCACCATTC
1 CAATTACAAGCATATCACCATTC
* *
33530410 CAATTTCAAGCATATTACCAT
1 CAATTACAAGCATATCACCAT
33530431 ATCATTTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.40, C:0.26, G:0.05, T:0.30
Consensus pattern (23 bp):
CAATTACAAGCATATCACCATTC
Found at i:33534625 original size:4 final size:4
Alignment explanation
Indices: 33534616--33534659 Score: 51
Period size: 4 Copynumber: 11.8 Consensus size: 4
33534606 TCTCTCTTCT
33534616 TTTC TTTC TTTC -TT- TTTC TTTC TTTTC TTT- TTTC TTT- TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC -TTTC TTTC TTTC TTTC TTTC TTT
33534660 TAATTTGCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
3 10 0.29
4 21 0.60
5 4 0.11
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (4 bp):
TTTC
Found at i:33534634 original size:14 final size:14
Alignment explanation
Indices: 33534615--33534660 Score: 67
Period size: 14 Copynumber: 3.2 Consensus size: 14
33534605 TTCTCTCTTC
33534615 TTTTCTTTCTTTCT
1 TTTTCTTTCTTTCT
33534629 TTTTCTTTCTTTTCTT
1 TTTTCTTTC-TTTC-T
33534645 TTTTCTTT-TTTCT
1 TTTTCTTTCTTTCT
33534658 TTT
1 TTT
33534661 AATTTGCATG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.13
14 13 0.43
15 4 0.13
16 9 0.30
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTCTTTCTTTCT
Found at i:33534636 original size:19 final size:19
Alignment explanation
Indices: 33534610--33534659 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
33534600 ATGCGTTCTC
33534610 TCTTCTTTTCTTTCTTTCTT
1 TCTTCTTTTCTTTCTTT-TT
33534630 T-TTC-TTTCTTTTCTTTTT
1 TCTTCTTTTC-TTTCTTTTT
33534648 TCTT-TTTTCTTT
1 TCTTCTTTTCTTT
33534660 TAATTTGCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
18 10 0.37
19 16 0.59
20 1 0.04
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (19 bp):
TCTTCTTTTCTTTCTTTTT
Found at i:33534638 original size:23 final size:23
Alignment explanation
Indices: 33534612--33534659 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
33534602 GCGTTCTCTC
33534612 TTCTTTTCTTTCTTTC-TTTTTCT
1 TTCTTTTCTTT-TTTCTTTTTTCT
33534635 TTCTTTTCTTTTTTCTTTTTTCT
1 TTCTTTTCTTTTTTCTTTTTTCT
33534658 TT
1 TT
33534660 TAATTTGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 4 0.17
23 20 0.83
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (23 bp):
TTCTTTTCTTTTTTCTTTTTTCT
Found at i:33540506 original size:49 final size:47
Alignment explanation
Indices: 33540285--33540643 Score: 556
Period size: 47 Copynumber: 7.6 Consensus size: 47
33540275 CCCTTCGGGA
* * * * * *
33540285 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33540332 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33540379 CTTATCACATATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33540426 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33540473 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33540522 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33540571 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33540618 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
33540644 CACAATTATC
Statistics
Matches: 290, Mismatches: 20, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
47 196 0.68
49 94 0.32
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33540679 original size:96 final size:95
Alignment explanation
Indices: 33540285--33540643 Score: 517
Period size: 96 Copynumber: 3.8 Consensus size: 95
33540275 CCCTTCGGGA
* * * * * * * * *
33540285 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
33540350 TTTCACATTCATCACATCGGCCATTA-GGC
66 ATTCACATTCATCACATTGGCCATTACGGC
* * *
33540379 CTTATCACATATATACACTTTCACATTCATCACATTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
33540444 TTTCACATTCATCACATCGGCCATTA-GGC
66 ATTCACATTCATCACATTGGCCATTACGGC
33540473 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
33540538 ACACTTTCACATTCATCACATTGGCCATT-CGGC
64 ACA--TTCACATTCATCACATTGGCCATTACGGC
33540571 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
33540636 ATTCACAT
66 ATTCACAT
33540644 CACAATTATC
Statistics
Matches: 247, Mismatches: 13, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
94 101 0.41
96 112 0.45
98 34 0.14
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (95 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ATTCACATTCATCACATTGGCCATTACGGC
Found at i:33543762 original size:20 final size:21
Alignment explanation
Indices: 33543737--33543776 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
33543727 ATAACTCAAG
33543737 AAATTTTT-AAAAAACAAAGA
1 AAATTTTTCAAAAAACAAAGA
*
33543757 AAATTTTTCAAAATACAAAG
1 AAATTTTTCAAAAAACAAAG
33543777 GACACATGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.60, C:0.07, G:0.05, T:0.28
Consensus pattern (21 bp):
AAATTTTTCAAAAAACAAAGA
Found at i:33547687 original size:27 final size:26
Alignment explanation
Indices: 33547657--33547803 Score: 161
Period size: 27 Copynumber: 5.5 Consensus size: 26
33547647 TCAAATTGGT
33547657 AAATGACTAGTTTTCCCTTATGAGGTA
1 AAATGACT-GTTTTCCCTTATGAGGTA
* * *
33547684 AAATGACTATTTTGTCCTTATGGGGTA
1 AAATGACTGTTTT-CCCTTATGAGGTA
* *
33547711 AAATGACTGCTTTGCCCTTAT-AGGGTG
1 AAATGACTG-TTTTCCCTTATGA-GGTA
*
33547738 AAATGATTGTTTTGCCCTTATGAGGTA
1 AAATGACTGTTTT-CCCTTATGAGGTA
* *
33547765 AAATGACTGTTTTTCCTTATGTGGTA
1 AAATGACTGTTTTCCCTTATGAGGTA
*
33547791 AAATAACTGTTTT
1 AAATGACTGTTTT
33547804 GTACTTTTAT
Statistics
Matches: 100, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
26 30 0.30
27 66 0.66
28 4 0.04
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (26 bp):
AAATGACTGTTTTCCCTTATGAGGTA
Found at i:33547716 original size:54 final size:53
Alignment explanation
Indices: 33547657--33547805 Score: 183
Period size: 54 Copynumber: 2.8 Consensus size: 53
33547647 TCAAATTGGT
* *
33547657 AAATGACTAGTTTTCCCTTATGAGGTAAAATGACTATTTTGTCCTTATGGGGTA
1 AAATGACT-GTTTTCCCTTATGAGGTAAAATGACTGTTTTGTCCTTATGAGGTA
* * * *
33547711 AAATGACTGCTTTGCCCTTAT-AGGGTGAAATGATTGTTTTGCCCTTATGAGGTA
1 AAATGACTG-TTTTCCCTTATGA-GGTAAAATGACTGTTTTGTCCTTATGAGGTA
* * *
33547765 AAATGACTGTTTTTCCTTATGTGGTAAAATAACTGTTTTGT
1 AAATGACTGTTTTCCCTTATGAGGTAAAATGACTGTTTTGT
33547806 ACTTTTATGG
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
53 26 0.33
54 53 0.67
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (53 bp):
AAATGACTGTTTTCCCTTATGAGGTAAAATGACTGTTTTGTCCTTATGAGGTA
Found at i:33547824 original size:80 final size:79
Alignment explanation
Indices: 33547653--33547839 Score: 232
Period size: 80 Copynumber: 2.3 Consensus size: 79
33547643 ACCCTCAAAT
* *
33547653 TGGTAAATGACTAGTTTTCCCTTATGAGGTAAAATGACTATTTTGTCCTTATGGGGTAAAATGAC
1 TGGTAAATGA-TTGTTTTCCCTTATGAGGTAAAATGACTATTTTGTCCTTATGGGGTAAAATAAC
*
33547718 TGCTTTGCCCTTATA
65 TGCTTTGCACTTATA
* * *
33547733 GGGTGAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTGTTTT-TCCTTATGTGGTAAAATAA
1 TGGT-AAATGATTGTTTT-CCCTTATGAGGTAAAATGACTATTTTGTCCTTATGGGGTAAAATAA
* * *
33547797 CTGTTTTGTACTTTTA
64 CTGCTTTGCACTTATA
*
33547813 TGGTAAGATGATTGTTTTACCTCTATG
1 TGGTAA-ATGATTGTTTTCCCT-TATG
33547840 TGATGTATGT
Statistics
Matches: 92, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
79 5 0.05
80 56 0.61
81 31 0.34
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (79 bp):
TGGTAAATGATTGTTTTCCCTTATGAGGTAAAATGACTATTTTGTCCTTATGGGGTAAAATAACT
GCTTTGCACTTATA
Found at i:33552405 original size:42 final size:41
Alignment explanation
Indices: 33552348--33552432 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 41
33552338 GTGCAGGTTT
* * *
33552348 CACACGGCCAAGACACACGCCCGTGT-TCTAGGCCATGTGGCA
1 CACACGACCAAGACACAAGCCCGTGTCTCT-GCCCATGT-GCA
*
33552390 CACACGACTAAGACACAAGCCCGTGTCTCTGCCCATGTGCA
1 CACACGACCAAGACACAAGCCCGTGTCTCTGCCCATGTGCA
33552431 CA
1 CA
33552433 ATTTTGAGCA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
41 5 0.13
42 30 0.79
43 3 0.08
ACGTcount: A:0.26, C:0.36, G:0.22, T:0.15
Consensus pattern (41 bp):
CACACGACCAAGACACAAGCCCGTGTCTCTGCCCATGTGCA
Found at i:33554534 original size:25 final size:25
Alignment explanation
Indices: 33554506--33554576 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
33554496 CCTCTTTAAT
**
33554506 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCAATA
33554531 AACTGGGGCAAAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCAATA
33554556 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
33554577 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
25 33 0.77
26 10 0.23
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCAATA
Found at i:33554651 original size:20 final size:20
Alignment explanation
Indices: 33554626--33554682 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
33554616 TTATGAATTC
*
33554626 ATCATGTGCATTTCATA-CA
1 ATCATGTGCATATCATATCA
33554645 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
33554666 ATCATGT--ATATCATATC
1 ATCATGTGCATATCATATC
33554683 CCACGTATCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 10 0.29
20 23 0.66
21 2 0.06
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:33554736 original size:25 final size:25
Alignment explanation
Indices: 33554708--33554755 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
33554698 ATAATTAAAC
* * *
33554708 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
33554733 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
33554756 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:33555058 original size:21 final size:20
Alignment explanation
Indices: 33555024--33555063 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
33555014 TGGGCCCGAA
33555024 AGCCCATTGGGCCCAACTTC
1 AGCCCATTGGGCCCAACTTC
*
33555044 AGCCCCTTGAGGCCCAACTT
1 AGCCCATTG-GGCCCAACTT
33555064 ATCGTAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.20, C:0.40, G:0.20, T:0.20
Consensus pattern (20 bp):
AGCCCATTGGGCCCAACTTC
Found at i:33557173 original size:20 final size:20
Alignment explanation
Indices: 33557144--33557188 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
33557134 AGCACATGTA
33557144 TTCATAAAATTTCAAAATTT
1 TTCATAAAATTTCAAAATTT
* * *
33557164 TTCATCAAATTTTACAATTT
1 TTCATAAAATTTCAAAATTT
33557184 TTCAT
1 TTCAT
33557189 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTCAAAATTT
Found at i:33560834 original size:40 final size:40
Alignment explanation
Indices: 33560741--33560957 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
33560731 AAGCCAAGTA
* * *
33560741 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
33560779 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
33560819 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
33560859 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
33560899 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
33560939 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
33560958 TTATCATCCG
Statistics
Matches: 160, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 131 0.82
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:33568856 original size:35 final size:35
Alignment explanation
Indices: 33568811--33568883 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
33568801 TGATTTAAAA
33568811 ATATGTCTATGGTACATGAAGTGCATTGAATTATC
1 ATATGTCTATGGTACATGAAGTGCATTGAATTATC
*
33568846 ATATTTCTATGGTACATGAAGTGCATTGAATTATC
1 ATATGTCTATGGTACATGAAGTGCATTGAATTATC
33568881 ATA
1 ATA
33568884 CATAAATGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (35 bp):
ATATGTCTATGGTACATGAAGTGCATTGAATTATC
Found at i:33569267 original size:68 final size:66
Alignment explanation
Indices: 33569195--33569341 Score: 163
Period size: 64 Copynumber: 2.2 Consensus size: 66
33569185 CATCATGTGT
* * * *
33569195 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
33569258 TGTAG
62 TGTAG
** * *
33569263 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
33569328 AG
65 AG
33569330 ACAAGAGAGCTA
1 ACAAGAGAGCTA
33569342 TGAGATAAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 24 0.35
65 3 0.04
66 4 0.06
67 24 0.35
68 13 0.19
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:33569300 original size:64 final size:64
Alignment explanation
Indices: 33569219--33569398 Score: 177
Period size: 67 Copynumber: 2.8 Consensus size: 64
33569209 AGACATTATG
* * *
33569219 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
33569283 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTATGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
33569348 AA
63 AA
* * * *
33569350 AT-TGGCTAGGCCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGA
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGA
33569399 AAGCCGAACT
Statistics
Matches: 93, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 15 0.16
64 25 0.27
66 20 0.22
67 32 0.34
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:33572210 original size:22 final size:23
Alignment explanation
Indices: 33572179--33572229 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
33572169 TCTAAGCTTA
* *
33572179 CAATTACAAG-ATATTACCATTT
1 CAATTTCAAGCATATTACCATAT
33572201 CAATTTCAAGCATATTACCATAT
1 CAATTTCAAGCATATTACCATAT
33572224 C-ATTTC
1 CAATTTC
33572230 GTACTATACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 14 0.54
23 12 0.46
ACGTcount: A:0.37, C:0.22, G:0.04, T:0.37
Consensus pattern (23 bp):
CAATTTCAAGCATATTACCATAT
Found at i:33573066 original size:38 final size:38
Alignment explanation
Indices: 33572986--33573074 Score: 124
Period size: 38 Copynumber: 2.3 Consensus size: 38
33572976 CGTTTGAAGT
*
33572986 AAAAACGCCGCTAAAGATCGAGCATTAGCGGTACTTAA
1 AAAAACGCCGCTAAAGATCGAGCATTAGCGGCACTTAA
* * *
33573024 AAAAATGCCGCTATAGATCGAGCATTAGCGGCATTTTCAA
1 AAAAACGCCGCTAAAGATCGAGCATTAGCGGCA-CTT-AA
33573064 AAAAACGCCGC
1 AAAAACGCCGC
33573075 AAAAAGTAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
38 30 0.68
39 2 0.05
40 12 0.27
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.19
Consensus pattern (38 bp):
AAAAACGCCGCTAAAGATCGAGCATTAGCGGCACTTAA
Found at i:33573330 original size:41 final size:41
Alignment explanation
Indices: 33573143--33573321 Score: 286
Period size: 41 Copynumber: 4.3 Consensus size: 41
33573133 TTGCCTAAAG
33573143 CGCCGCTAATGCTCAGATCTATAGCGGCGCTTTCTGAAAAA
1 CGCCGCTAATGCTCAGATCTATAGCGGCGCTTTCTGAAAAA
* * *
33573184 CGCCGCTAATGCTCAGATCTATAGCTGCACTTTTTGAAAAA
1 CGCCGCTAATGCTCAGATCTATAGCGGCGCTTTCTGAAAAA
** *
33573225 CGTTGCTAATGCTCAGATCTATAGCGGCTCTTTCTGAAAAA
1 CGCCGCTAATGCTCAGATCTATAGCGGCGCTTTCTGAAAAA
*
33573266 CGCTGCTAATGCTCAGATCTATAGCGGCGCTTTCTGAAAAAA
1 CGCCGCTAATGCTCAGATCTATAGCGGCGCTTTCTG-AAAAA
33573308 CGCCGCTAATGCTC
1 CGCCGCTAATGCTC
33573322 TATTTATAGT
Statistics
Matches: 126, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
41 108 0.86
42 18 0.14
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (41 bp):
CGCCGCTAATGCTCAGATCTATAGCGGCGCTTTCTGAAAAA
Found at i:33573347 original size:41 final size:42
Alignment explanation
Indices: 33573143--33573352 Score: 221
Period size: 41 Copynumber: 5.1 Consensus size: 42
33573133 TTGCCTAAAG
* * *
33573143 CGCCGCTAATGCTCAGATCTATAGCGGCGCTTTCT-GAAAAA
1 CGCCGCTAATGCTCAGATCTATAGCGGCACTTTTTCAAAAAA
* *
33573184 CGCCGCTAATGCTCAGATCTATAGCTGCACTTTTT-GAAAAA
1 CGCCGCTAATGCTCAGATCTATAGCGGCACTTTTTCAAAAAA
** * * *
33573225 CGTTGCTAATGCTCAGATCTATAGCGGCTCTTTCT-GAAAAA
1 CGCCGCTAATGCTCAGATCTATAGCGGCACTTTTTCAAAAAA
* * * *
33573266 CGCTGCTAATGCTCAGATCTATAGCGGCGCTTTCTGAAAAAA
1 CGCCGCTAATGCTCAGATCTATAGCGGCACTTTTTCAAAAAA
* * * * *
33573308 CGCCGCTAATGCTC-TATTTATAGTGGCATTTTTTCAAAAAG
1 CGCCGCTAATGCTCAGATCTATAGCGGCACTTTTTCAAAAAA
33573349 CGCC
1 CGCC
33573353 ACAAAAACAT
Statistics
Matches: 148, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
41 130 0.88
42 18 0.12
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (42 bp):
CGCCGCTAATGCTCAGATCTATAGCGGCACTTTTTCAAAAAA
Found at i:33573650 original size:14 final size:14
Alignment explanation
Indices: 33573628--33573673 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
33573618 TTACTTATCA
*
33573628 TTATAGTTTAAGGT
1 TTATAGTTTAGGGT
*
33573642 TTATGGTTTAGGGT
1 TTATAGTTTAGGGT
*
33573656 ATATAGTTTAGGGT
1 TTATAGTTTAGGGT
33573670 TTAT
1 TTAT
33573674 GATGAGTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:33573776 original size:7 final size:7
Alignment explanation
Indices: 33573764--33573797 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
33573754 ATCTCAAGGT
33573764 TTATGGA
1 TTATGGA
33573771 TTATGGA
1 TTATGGA
33573778 TTATGGA
1 TTATGGA
*
33573785 CTTAGGGA
1 -TTATGGA
33573793 TTATG
1 TTATG
33573798 ATTTATGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.41
Consensus pattern (7 bp):
TTATGGA
Found at i:33573795 original size:15 final size:14
Alignment explanation
Indices: 33573764--33573797 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
33573754 ATCTCAAGGT
*
33573764 TTATGGATTATGGA
1 TTATGGATTAGGGA
33573778 TTATGGACTTAGGGA
1 TTATGGA-TTAGGGA
33573793 TTATG
1 TTATG
33573798 ATTTATGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.41
Consensus pattern (14 bp):
TTATGGATTAGGGA
Found at i:33573942 original size:8 final size:7
Alignment explanation
Indices: 33573847--33573987 Score: 68
Period size: 7 Copynumber: 19.3 Consensus size: 7
33573837 TATGATTTAG
33573847 GGGTTAA
1 GGGTTAA
*
33573854 AGGTTAA
1 GGGTTAA
*
33573861 GGGTCTAC
1 GGGT-TAA
*
33573869 GAGTTAA
1 GGGTTAA
*
33573876 GGGTCCAA
1 GGGT-TAA
*
33573884 TGGTTAA
1 GGGTTAA
33573891 GGGTTAA
1 GGGTTAA
33573898 GGG-TACA
1 GGGTTA-A
* *
33573905 TGGTTTA
1 GGGTTAA
33573912 GGGTTTAA
1 GGG-TTAA
* * *
33573920 AGTTTAG
1 GGGTTAA
33573927 GGGTTAA
1 GGGTTAA
33573934 GGGTCTAA
1 GGGT-TAA
* *
33573942 GGGCTAT
1 GGGTTAA
*
33573949 GAGTTAA
1 GGGTTAA
*
33573956 GGGTTAT
1 GGGTTAA
*
33573963 GGGTTTA
1 GGGTTAA
*
33573970 GGGATTTAG
1 GGG--TTAA
33573979 GGGTTAA
1 GGGTTAA
33573986 GG
1 GG
33573988 CATTAAATGG
Statistics
Matches: 94, Mismatches: 32, Indels: 16
0.66 0.23 0.11
Matches are distributed among these distances:
6 2 0.02
7 66 0.70
8 21 0.22
9 5 0.05
ACGTcount: A:0.26, C:0.05, G:0.38, T:0.31
Consensus pattern (7 bp):
GGGTTAA
Found at i:33574328 original size:18 final size:17
Alignment explanation
Indices: 33574297--33574330 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
33574287 ATAAGTGATT
*
33574297 TTTTTTAATTTATATTG
1 TTTTTAAATTTATATTG
33574314 TTTTTAAATTATATATT
1 TTTTTAAATT-TATATT
33574331 AAATAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
TTTTTAAATTTATATTG
Found at i:33574967 original size:10 final size:10
Alignment explanation
Indices: 33574952--33574984 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
33574942 TGTACATTCT
33574952 TCTCTGCTCA
1 TCTCTGCTCA
33574962 TCTCTGCTCA
1 TCTCTGCTCA
33574972 --TCTGCTCA
1 TCTCTGCTCA
33574980 TCTCT
1 TCTCT
33574985 AAAATTCCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
8 8 0.38
10 13 0.62
ACGTcount: A:0.09, C:0.39, G:0.09, T:0.42
Consensus pattern (10 bp):
TCTCTGCTCA
Found at i:33575038 original size:215 final size:205
Alignment explanation
Indices: 33574670--33575089 Score: 617
Period size: 215 Copynumber: 2.0 Consensus size: 205
33574660 ATTATCACTT
* *
33574670 GTTTTTCCCCAATTTGACATCCGAAAAAAACCCCATCTTCCCCAGTTTGAAATCTCAAAAATTTA
1 GTTTTACCCCAATTTGACATCCGAAAAAAACCCCATCTTCCCCAGTTTGAAATCTCAAAAATTCA
*
33574735 CCTGTAAGTTCTTCTCTGCTCATTTGCTCATCTCTAAAATTCCCCAATTCGACATCCGAAAAAAC
66 CCTGTAAGTTCTTCTCTGCTCATTTGCTCATCTCTAAAATTCCCCAATTCGACATCCAAAAAAAC
* * * *
33574800 CCCTTTTGCCTTTTTCATTTACACCTGTAAGTTATTCTTTGCTCCTCTCCTCGATAATTTTTGGA
131 CCCTTTTGCCTTTTGCATTTACACCTGTAAGTTATTCTCTACTCATCTCCTCGATAATTTTTGGA
33574865 TTCAAAGGAA
196 TTCAAAGGAA
* * *
33574875 GTTTTACCCCAATTTGACATCCGAAAAAAACCCCTTCTTCCCCATTTTGAAATCTCTAAAATTCA
1 GTTTTACCCCAATTTGACATCCGAAAAAAACCCCATCTTCCCCAGTTTGAAATCTCAAAAATTCA
33574940 CCTGTACA-TTCTTCTCTGCTCATCTCTGCTCATCTGCTCATCTCTAAAATTCCCCAATTCGACA
66 CCTGTA-AGTTCTTCTCTGCTCA-------T--T-TGCTCATCTCTAAAATTCCCCAATTCGACA
* *
33575004 TCCAAAAAAACCCCTTTTGCCTTTTGCGTTTACACCTGTAAGTTCTTCTCTACTCATCTCCTCGA
120 TCCAAAAAAACCCCTTTTGCCTTTTGCATTTACACCTGTAAGTTATTCTCTACTCATCTCCTCGA
*
33575069 TAATTTTTGGGTTCAAAGGAA
185 TAATTTTTGGATTCAAAGGAA
33575090 CAGCGTATTT
Statistics
Matches: 191, Mismatches: 13, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
205 80 0.42
206 1 0.01
212 1 0.01
214 1 0.01
215 108 0.57
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.36
Consensus pattern (205 bp):
GTTTTACCCCAATTTGACATCCGAAAAAAACCCCATCTTCCCCAGTTTGAAATCTCAAAAATTCA
CCTGTAAGTTCTTCTCTGCTCATTTGCTCATCTCTAAAATTCCCCAATTCGACATCCAAAAAAAC
CCCTTTTGCCTTTTGCATTTACACCTGTAAGTTATTCTCTACTCATCTCCTCGATAATTTTTGGA
TTCAAAGGAA
Found at i:33578835 original size:105 final size:105
Alignment explanation
Indices: 33578697--33579020 Score: 549
Period size: 105 Copynumber: 3.1 Consensus size: 105
33578687 TTAACCTTAT
* * * * * *
33578697 TAATTAAATTAAATTGTAATTAAAGTTTTATTTTGAAGATATTATTTTATTTTATTTTAATCATG
1 TAATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTTTATTTTATTTTATTTTAATCACG
* *
33578762 ATAAATATTTTGTCTACTTTTATTTTAATTTTAAATTACC
66 AAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACC
* * *
33578802 TAATTAAATGAAATTGTATTTAAAATTTTATTTTAAATTTTTTATTTTATTTTATTTTAATCAGG
1 TAATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTTTATTTTATTTTATTTTAATCACG
33578867 AAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACC
66 AAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACC
33578907 TAATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTTTATTTTATTTTATTTTAATCACG
1 TAATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTTTATTTTATTTTATTTTAATCACG
33578972 AAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACC
66 AAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACC
33579012 TAATTAAAT
1 TAATTAAAT
33579021 AATCATTATT
Statistics
Matches: 206, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
105 206 1.00
ACGTcount: A:0.35, C:0.05, G:0.04, T:0.55
Consensus pattern (105 bp):
TAATTAAATTAAATTGTATTTAAAATTTTATTTTAAATATTTTATTTTATTTTATTTTAATCACG
AAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACC
Found at i:33578950 original size:14 final size:13
Alignment explanation
Indices: 33578925--33578966 Score: 54
Period size: 10 Copynumber: 3.4 Consensus size: 13
33578915 TTAAATTGTA
33578925 TTTAAAATTTTAT
1 TTTAAAATTTTAT
33578938 TTTAAATATTTTAT
1 TTTAAA-ATTTTAT
33578952 TTT---ATTTTAT
1 TTTAAAATTTTAT
33578962 TTTAA
1 TTTAA
33578967 TCACGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 10 0.38
13 6 0.23
14 10 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTAAAATTTTAT
Found at i:33579180 original size:9 final size:9
Alignment explanation
Indices: 33579164--33579402 Score: 109
Period size: 9 Copynumber: 25.9 Consensus size: 9
33579154 ATATCATATC
33579164 TTACATAAT
1 TTACATAAT
*
33579173 TTACATAAG
1 TTACATAAT
* * *
33579182 GTAAATAAC
1 TTACATAAT
33579191 TTACATAAT
1 TTACATAAT
*
33579200 TCACATAAT
1 TTACATAAT
33579209 TTACATAA-
1 TTACATAAT
33579217 -TACATAA-
1 TTACATAAT
*
33579224 TGACGTATCATAT
1 TTAC--AT-A-AT
33579237 CTTACATAAT
1 -TTACATAAT
*
33579247 TTACATAAG
1 TTACATAAT
* * *
33579256 ATAAATAAC
1 TTACATAAT
33579265 TTACATAAT
1 TTACATAAT
*
33579274 TTACATAAC
1 TTACATAAT
33579283 TTACATAA-
1 TTACATAAT
33579291 -TACATAA-
1 TTACATAAT
*
33579298 TGACGTATCATAT
1 TTAC--AT-A-AT
33579311 CTTACATAAT
1 -TTACATAAT
*
33579321 TTACATAAG
1 TTACATAAT
* * * *
33579330 ATAAATTAC
1 TTACATAAT
33579339 TTACATAAT
1 TTACATAAT
*
33579348 TTACATAAC
1 TTACATAAT
*
33579357 CTACATAA-
1 TTACATAAT
33579365 -TACATAAAT
1 TTACAT-AAT
33579374 ATATATCAT-AT
1 -T-TA-CATAAT
33579385 CTTACATAAT
1 -TTACATAAT
33579395 TTACATAA
1 TTACATAA
33579403 GATAATCCCT
Statistics
Matches: 176, Mismatches: 33, Indels: 42
0.70 0.13 0.17
Matches are distributed among these distances:
7 19 0.11
8 6 0.03
9 115 0.65
10 12 0.07
11 7 0.04
12 8 0.05
13 3 0.02
14 6 0.03
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (9 bp):
TTACATAAT
Found at i:33579262 original size:74 final size:74
Alignment explanation
Indices: 33579155--33579407 Score: 427
Period size: 74 Copynumber: 3.4 Consensus size: 74
33579145 CATAAATATA
* * *
33579155 TATCATATCTTACATAATTTACATAAGGTAAATAACTTACATAATTCACATAATTTACATAATAC
1 TATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACATAACTTACATAATAC
33579220 ATAATGACG
66 ATAATGACG
33579229 TATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACATAACTTACATAATAC
1 TATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACATAACTTACATAATAC
33579294 ATAATGACG
66 ATAATGACG
* *
33579303 TATCATATCTTACATAATTTACATAAGATAAATTACTTACATAATTTACATAACCTACATAATAC
1 TATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACATAACTTACATAATAC
**
33579368 ATAAAT-ATA
66 AT-AATGACG
33579377 TATCATATCTTACATAATTTACATAAGATAA
1 TATCATATCTTACATAATTTACATAAGATAA
33579408 TCCCTTTTAT
Statistics
Matches: 171, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
74 168 0.98
75 3 0.02
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.36
Consensus pattern (74 bp):
TATCATATCTTACATAATTTACATAAGATAAATAACTTACATAATTTACATAACTTACATAATAC
ATAATGACG
Found at i:33584912 original size:21 final size:21
Alignment explanation
Indices: 33584888--33584969 Score: 96
Period size: 21 Copynumber: 3.9 Consensus size: 21
33584878 GGCAGTAGAA
33584888 AGGGAGGCAGCA-GCAGCAGCG
1 AGGGAGGCAG-AGGCAGCAGCG
* * *
33584909 AGGGAGGCGGCGGCAGCAGTG
1 AGGGAGGCAGAGGCAGCAGCG
*
33584930 AGGGAGGCCGAGGCA-CGAGCG
1 AGGGAGGCAGAGGCAGC-AGCG
33584951 AGGGAGGCAGAGGCAGCAG
1 AGGGAGGCAGAGGCAGCAG
33584970 TGATGGCAGC
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
20 1 0.02
21 49 0.96
22 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.52, T:0.01
Consensus pattern (21 bp):
AGGGAGGCAGAGGCAGCAGCG
Found at i:33584924 original size:42 final size:42
Alignment explanation
Indices: 33584873--33584969 Score: 108
Period size: 42 Copynumber: 2.3 Consensus size: 42
33584863 ACAACTTAGA
*
33584873 GCGGAGGCAGTAGAAAGGGAGGCAGCA-GCA-GCAGCGAGGGAG
1 GCGGAGGCAGCAGAAAGGGAGGCAG-AGGCACG-AGCGAGGGAG
* ** *
33584915 GCGGCGGCAGCAGTGAGGGAGGCCGAGGCACGAGCGAGGGAG
1 GCGGAGGCAGCAGAAAGGGAGGCAGAGGCACGAGCGAGGGAG
*
33584957 GCAGAGGCAGCAG
1 GCGGAGGCAGCAG
33584970 TGATGGCAGC
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 44 0.96
43 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.52, T:0.02
Consensus pattern (42 bp):
GCGGAGGCAGCAGAAAGGGAGGCAGAGGCACGAGCGAGGGAG
Found at i:33585274 original size:31 final size:31
Alignment explanation
Indices: 33585218--33585284 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
33585208 TCGGTTGTAT
* **
33585218 TTTTATGCTAAATTTGTTGTTTTTGGCTGCA
1 TTTTATACTAAATTTGTTGCATTTGGCTGCA
* * *
33585249 TTTTATACTATATTTGTTGCATTTGGTTGGA
1 TTTTATACTAAATTTGTTGCATTTGGCTGCA
33585280 TTTTA
1 TTTTA
33585285 ATGCAGGAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.07, G:0.18, T:0.57
Consensus pattern (31 bp):
TTTTATACTAAATTTGTTGCATTTGGCTGCA
Found at i:33586195 original size:23 final size:22
Alignment explanation
Indices: 33586169--33586215 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
33586159 GCATTCTCCC
33586169 TTCTTGTCTTTCTTTCTTTTTCT
1 TTCTTGTCTTTC-TTCTTTTTCT
*
33586192 TTCTTTTCTTTCTTCTTTTTCT
1 TTCTTGTCTTTCTTCTTTTTCT
33586214 TT
1 TT
33586216 TAATTTGCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (22 bp):
TTCTTGTCTTTCTTCTTTTTCT
Found at i:33586198 original size:9 final size:9
Alignment explanation
Indices: 33586177--33586216 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
33586167 CCTTCTTGTC
33586177 TTTCTTTCTT
1 TTTCTTTC-T
33586187 TTTCTTTCT
1 TTTCTTTCT
33586196 TTTCTTTCT
1 TTTCTTTCT
33586205 TCTT-TTTCT
1 T-TTCTTTCT
33586214 TTT
1 TTT
33586217 AATTTGCATG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.07
9 17 0.59
10 10 0.34
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTCTTTCT
Found at i:33586248 original size:3 final size:3
Alignment explanation
Indices: 33586240--33586270 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
33586230 CCACTTTCTT
33586240 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
33586271 AATATAATAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:33597624 original size:27 final size:27
Alignment explanation
Indices: 33597570--33597645 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 27
33597560 TTTACAAGAT
**
33597570 ATGGACTTTCCACGAAAGATAGTTCTG
1 ATGGACTTTCCACGAAAGATAGACCTG
*
33597597 ATGGACTTTCCAC-ATTAGATAGACCTG
1 ATGGACTTTCCACGA-AAGATAGACCTG
* *
33597624 ACGGAC-TTCCTACAAAAGATAG
1 ATGGACTTTCC-ACGAAAGATAG
33597646 TCCAAATAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
26 5 0.12
27 35 0.85
28 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (27 bp):
ATGGACTTTCCACGAAAGATAGACCTG
Found at i:33599429 original size:48 final size:48
Alignment explanation
Indices: 33599359--33599451 Score: 125
Period size: 48 Copynumber: 1.9 Consensus size: 48
33599349 ACTGTGATTA
* * * *
33599359 ATGATATTTGTGTCTGTGTAAGACCATGTCTGGGTCATGGCATCGGTG
1 ATGATATGTGTGTCTGTATAAGACCATGTCTAGGACATGGCATCGGTG
*
33599407 ATGATATGTGTG-CTAGTATAAGATCATGTCTAGGACATGGCATCG
1 ATGATATGTGTGTCT-GTATAAGACCATGTCTAGGACATGGCATCG
33599452 ACACTGACAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 2 0.05
48 37 0.95
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (48 bp):
ATGATATGTGTGTCTGTATAAGACCATGTCTAGGACATGGCATCGGTG
Found at i:33607359 original size:60 final size:61
Alignment explanation
Indices: 33607222--33607370 Score: 164
Period size: 60 Copynumber: 2.5 Consensus size: 61
33607212 CTATTCAGAA
* * * * *
33607222 ATCAGAGT-TAACTGGGCCTTAGCACATATTAATATTAATCTGGGCCATAGCCCCTTATAGT
1 ATCAGAGTAT-ACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTAAAGT
*
33607283 ATCAGAGTATACTGGGCC-TAGCCCATATCAGTATCAATCTGGGCCATAGCCCTATTACAAGT
1 ATCAGAGTATACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTA-AAGT
* *
33607345 -TGAGA-TATATTGGGCCTTA-CCCATAT
1 ATCAGAGTATACTGGGCCTTAGCCCATAT
33607371 TAACACAGTT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
60 47 0.62
61 25 0.33
62 4 0.05
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (61 bp):
ATCAGAGTATACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTAAAGT
Found at i:33607417 original size:19 final size:20
Alignment explanation
Indices: 33607375--33607418 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
33607365 CCATATTAAC
** *
33607375 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
33607395 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
33607414 ACAGT
1 ACAGT
33607419 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:33619886 original size:42 final size:42
Alignment explanation
Indices: 33619827--33619990 Score: 149
Period size: 42 Copynumber: 3.9 Consensus size: 42
33619817 TTAGGGTTAC
33619827 CGAGACTAT-GTGTAAGACCATATCTGGGATATGGCATCATTA
1 CGAGACTATCGTGTAAGACCATATCTGGGATATGGCATCA-TA
* *
33619869 CGAGACT-TCGTGTAAGACCATATTTGGGATATGGCATGGATA
1 CGAGACTATCGTGTAAGACCATATCTGGGATATGGCAT-CATA
* * ** *
33619911 --TGACGTTTCGTGTAAGACCATAGATGGGCTATCGGCATCGATA
1 CGAGAC-TATCGTGTAAGACCATATCTGGGATAT-GGCATC-ATA
** * *
33619954 CGAGA-TCCCATGTAAGACTATATCTGGGATATGGCAT
1 CGAGACTATCGTGTAAGACCATATCTGGGATATGGCAT
33619991 TAGTGTAGTA
Statistics
Matches: 99, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
40 3 0.03
41 2 0.02
42 63 0.64
43 29 0.29
45 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (42 bp):
CGAGACTATCGTGTAAGACCATATCTGGGATATGGCATCATA
Found at i:33619982 original size:85 final size:84
Alignment explanation
Indices: 33619836--33619990 Score: 206
Period size: 85 Copynumber: 1.8 Consensus size: 84
33619826 CCGAGACTAT
** * * *
33619836 GTGTAAGACCATATCTGGGATATGGCATCATTACGAGACTTCGTGTAAGACCATATTTGGGATAT
1 GTGTAAGACCATAGATGGGATATGGCATCATTACGAGACTCCATGTAAGACCATATCTGGGATAT
33619901 GGCATGGATATGACGTTTC
66 GGCATGGATATGACGTTTC
* *
33619920 GTGTAAGACCATAGATGGGCTATCGGCATCGA-TACGAGA-TCCCATGTAAGACTATATCTGGGA
1 GTGTAAGACCATAGATGGGATAT-GGCATC-ATTACGAGACT-CCATGTAAGACCATATCTGGGA
33619983 TATGGCAT
63 TATGGCAT
33619991 TAGTGTAGTA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
84 21 0.34
85 39 0.64
86 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (84 bp):
GTGTAAGACCATAGATGGGATATGGCATCATTACGAGACTCCATGTAAGACCATATCTGGGATAT
GGCATGGATATGACGTTTC
Found at i:33622652 original size:79 final size:82
Alignment explanation
Indices: 33622541--33622725 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
33622531 GCTACTCGTT
* *
33622541 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
33622604 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
33622621 CAAATGCCTTCAGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
33622684 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
33622701 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
33622726 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:33622725 original size:40 final size:40
Alignment explanation
Indices: 33622522--33622725 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
33622512 CGGAATTTAA
** *
33622522 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
33622562 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
33622602 CCGGATTTAGTAACTCGCACAAATGCCTTCAGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
33622641 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
33622681 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
33622721 CCGGA
1 CCGGA
33622726 CATCATTCAA
Statistics
Matches: 140, Mismatches: 17, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 93 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:33624329 original size:20 final size:20
Alignment explanation
Indices: 33624272--33624334 Score: 99
Period size: 20 Copynumber: 3.1 Consensus size: 20
33624262 GGCTGTCACA
* *
33624272 TGTCCCAAGCCACACAGGCA
1 TGTCCCAAGCCACACGGGCG
33624292 TGTCCCAAGCCACACGGGCG
1 TGTCCCAAGCCACACGGGCG
*
33624312 TGTCCCAAGCCACGCGGGCG
1 TGTCCCAAGCCACACGGGCG
33624332 TGT
1 TGT
33624335 GGCTCTTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.21, C:0.38, G:0.29, T:0.13
Consensus pattern (20 bp):
TGTCCCAAGCCACACGGGCG
Found at i:33625254 original size:45 final size:45
Alignment explanation
Indices: 33625190--33625535 Score: 251
Period size: 45 Copynumber: 7.7 Consensus size: 45
33625180 AGGAAATGAT
33625190 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATAAA
*
33625235 TAAGACCACAGTTGAAAGACACTATGGCACTATACCAAAAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATAAA
* * * *
33625280 TAAGACCATAGTTGAAAGACACTATGGCACCATACCAGAAACAAG
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATAAA
* * * *** * * * * *
33625325 TAAGACCATGGCTAAAAGATGTTATGGCA-TCATGATTC--TATTGAG
1 TAAGACCATAGTTGAAAGACACTATGGCACT-AT-A-CCAAAAATAAA
* * * *
33625370 TAAGACCATAGCTGAAAGACACTATGGCA-T-CACGAATCAAAGAAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATACCAA--AAATAAA
* * *
33625415 TAAGACCATAGTTAAAAGACAC-ATGGCA--ACACGACAGAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCACTATAC--CA-AAAATAAA
* * * * * ** *
33625460 TAAGACCATGGTTGAAAGACAGTATGGCGTCAAGA-TGAGAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGC-ACTATACCAAAAATAAA
* *
33625505 TAAGACCATGGTTGAAAGACACCATGGCACT
1 TAAGACCATAGTTGAAAGACACTATGGCACT
33625536 CTCCAATCAT
Statistics
Matches: 237, Mismatches: 49, Indels: 31
0.75 0.15 0.10
Matches are distributed among these distances:
42 1 0.00
44 10 0.04
45 215 0.91
46 7 0.03
47 2 0.01
49 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (45 bp):
TAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATAAA
Found at i:33625509 original size:135 final size:135
Alignment explanation
Indices: 33625229--33625535 Score: 320
Period size: 135 Copynumber: 2.3 Consensus size: 135
33625219 CTATACCAAA
* * * *
33625229 AATAAATAAGACCACAGTTGAAAGACACTATGGCACTATACCAAAAATAAATAAGACCATAGTTG
1 AATAAATAAGACCATAGTTGAAAGACACTATGGCACTACACCAAAAAGAAATAAGACCATAGTTA
* * * * *
33625294 AAAGACACTATGGCACCATACCAGAAACAAGTAAGACCATGGCTAAAAGATGTTATGGCATCATG
66 AAAGACACTATGGCAACAGACCAGAAACAAATAAGACCATGGCTAAAAGAAGTTATGGCATCAAG
***
33625359 ATTCT
131 ATGAG
* * * * *
33625364 ATTGAGTAAGACCATAGCTGAAAGACACTATGGCA-T-CACGAATCAAAGAAATAAGACCATAGT
1 AATAAATAAGACCATAGTTGAAAGACACTATGGCACTACACCAA--AAAGAAATAAGACCATAGT
* *
33625427 TAAAAGACAC-ATGGCAACACGA-CAGAAA-ATGAATAAGACCATGGTTGAAAGACAG-TATGGC
64 TAAAAGACACTATGGCAACA-GACCAGAAACA--AATAAGACCATGGCTAAAAGA-AGTTATGGC
*
33625488 GTCAAGATGAG
125 ATCAAGATGAG
* *
33625499 AATAAATAAGACCATGGTTGAAAGACACCATGGCACT
1 AATAAATAAGACCATAGTTGAAAGACACTATGGCACT
33625536 CTCCAATCAT
Statistics
Matches: 139, Mismatches: 26, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
133 5 0.04
134 15 0.11
135 117 0.84
136 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (135 bp):
AATAAATAAGACCATAGTTGAAAGACACTATGGCACTACACCAAAAAGAAATAAGACCATAGTTA
AAAGACACTATGGCAACAGACCAGAAACAAATAAGACCATGGCTAAAAGAAGTTATGGCATCAAG
ATGAG
Found at i:33627746 original size:20 final size:20
Alignment explanation
Indices: 33627721--33627763 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
33627711 GTGTTACATT
33627721 TGGTATTTATAGTAGAGGGA
1 TGGTATTTATAGTAGAGGGA
33627741 TGGTATTTATAGTAGAGGGA
1 TGGTATTTATAGTAGAGGGA
33627761 TGG
1 TGG
33627764 AATAGGAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (20 bp):
TGGTATTTATAGTAGAGGGA
Found at i:33634765 original size:73 final size:73
Alignment explanation
Indices: 33634646--33634793 Score: 296
Period size: 73 Copynumber: 2.0 Consensus size: 73
33634636 CATCAAAATC
33634646 AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
1 AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
33634711 AATCGACT
66 AATCGACT
33634719 AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
1 AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
33634784 AATCGACT
66 AATCGACT
33634792 AA
1 AA
33634794 GAACAAACCT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 75 1.00
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.26
Consensus pattern (73 bp):
AAAAATTAAAGCTTGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAA
AATCGACT
Found at i:33637497 original size:14 final size:15
Alignment explanation
Indices: 33637478--33637507 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33637468 GTTTATTATA
33637478 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
33637492 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
33637507 T
1 T
33637508 CTTAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:33639628 original size:84 final size:84
Alignment explanation
Indices: 33639392--33639610 Score: 366
Period size: 84 Copynumber: 2.6 Consensus size: 84
33639382 TTTGGGCTTT
* *
33639392 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCAGACTTAAAGGTCTAGCAAGCTTTAAGCTG
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTA
* *
33639457 GTGAATATTATGGGGTTCC
66 GTGAATATTATCGGGCTCC
* * * *
33639476 GAGCCTAGCAGGCGTAATGTCGATGGAATGATATTGGACTTAAAGGTCTAGCAAGCTTTAAGCTA
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTA
33639541 GTGAATATTATCGGGCTCC
66 GTGAATATTATCGGGCTCC
33639560 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAG
1 GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAG
33639611 AAGGCTTATT
Statistics
Matches: 123, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 123 1.00
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (84 bp):
GAGCCTAGCAGGCGTAATGCCGGTGAAATGATATCGGACTTAAAGGTCTAGCAAGCTTTAAGCTA
GTGAATATTATCGGGCTCC
Found at i:33643557 original size:56 final size:56
Alignment explanation
Indices: 33643492--33643608 Score: 225
Period size: 56 Copynumber: 2.1 Consensus size: 56
33643482 ACAAGGGATG
33643492 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
33643548 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
33643604 ATGGG
1 ATGGG
33643609 TAATAAACTA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:33645227 original size:40 final size:40
Alignment explanation
Indices: 33645039--33645263 Score: 237
Period size: 40 Copynumber: 5.7 Consensus size: 40
33645029 CCGAATGATG
* * *
33645039 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
* *
33645079 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
33645119 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
33645159 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
33645198 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AA
* *
33645239 -CCGGGCTATGACCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
33645264 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
39 33 0.20
40 117 0.72
41 12 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:33645257 original size:119 final size:120
Alignment explanation
Indices: 33645039--33645263 Score: 280
Period size: 119 Copynumber: 1.9 Consensus size: 120
33645029 CCGAATGATG
*
33645039 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * *
33645104 GTGCGAGATACTAATTCCGGACTAAGATCTGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAATACCGGACTAAGACCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
33645159 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCC-GAGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGA-CTAAGAT-CCGAAGGCA
* * *
33645220 TTTGTGCGAGTTACT-ATAACCGGGCTATGACCCGAAGGCATTTG
63 TTTGTGCGAGATACTAAT-ACCGGACTAAGACCCGAAGGCATTTG
33645264 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
118 5 0.06
119 67 0.74
120 18 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGACTAAGACCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:33645286 original size:79 final size:78
Alignment explanation
Indices: 33645046--33645296 Score: 251
Period size: 79 Copynumber: 3.2 Consensus size: 78
33645036 ATGTCCGGGC
* * * * *
33645046 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA
*
33645110 GATACTAATTCCGGAC
65 GATACTAA-TCCGG-T
* *
33645126 TAAGAT-CTGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCATTTGTGCG
*
33645188 AGTTACTAAATCCGAGT
64 AGATACT-AATCCG-GT
* * **
33645205 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGACCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
33645270 -TAGCTATATCCGGT
66 ATA-CTA-ATCCGGT
* *
33645284 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
33645297 TACGTGATTT
Statistics
Matches: 144, Mismatches: 17, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
78 1 0.01
79 80 0.56
80 55 0.38
81 8 0.06
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
ATACTAATCCGGT
Found at i:33651400 original size:18 final size:18
Alignment explanation
Indices: 33651377--33651414 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
33651367 AATTTAAAAC
33651377 TATCATACTGACACTCAA
1 TATCATACTGACACTCAA
33651395 TATCATACTGACACTCAA
1 TATCATACTGACACTCAA
33651413 TA
1 TA
33651415 GGGCCTTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.26, G:0.05, T:0.29
Consensus pattern (18 bp):
TATCATACTGACACTCAA
Found at i:33655758 original size:12 final size:11
Alignment explanation
Indices: 33655738--33655780 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 11
33655728 CTTTCATAAA
33655738 AATTGTATATTT
1 AATT-TATATTT
33655750 AATTATATATTTT
1 AATT-TATA-TTT
33655763 AAATTTATATTT
1 -AATTTATATTT
33655775 AATTTA
1 AATTTA
33655781 ATTATATATG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 6 0.21
12 11 0.39
13 7 0.25
14 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (11 bp):
AATTTATATTT
Found at i:33659545 original size:45 final size:45
Alignment explanation
Indices: 33659463--33659572 Score: 121
Period size: 45 Copynumber: 2.4 Consensus size: 45
33659453 CCAGACATGG
* * * *
33659463 TCTTACACGTAACCACATATATCGATGATAACATCCCAAATGTGA
1 TCTTACACGAAAACACATATATCGATGACAACATCCCAAACGTGA
* * * * *
33659508 TTTTACACGAAAACACATATATCGATGCCAACGTCCCAGACGTGG
1 TCTTACACGAAAACACATATATCGATGACAACATCCCAAACGTGA
**
33659553 TCTTACATAAAAACACATAT
1 TCTTACACGAAAACACATAT
33659573 CAAAATCCTA
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 53 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (45 bp):
TCTTACACGAAAACACATATATCGATGACAACATCCCAAACGTGA
Found at i:33668427 original size:40 final size:40
Alignment explanation
Indices: 33668329--33668631 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
33668319 TCCTCGTTCA
* * * * *
33668329 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
33668368 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
33668408 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
33668448 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
33668488 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
33668528 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
33668568 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
33668608 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33668632 CAGCATTCAA
Statistics
Matches: 238, Mismatches: 22, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 37 0.16
40 193 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:33672601 original size:28 final size:27
Alignment explanation
Indices: 33672506--33672687 Score: 98
Period size: 27 Copynumber: 6.6 Consensus size: 27
33672496 TATTGAGGCC
* * * * *
33672506 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACATAGTTAACT
* * * * *
33672533 CGCACACTTAG-GCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTTAACT
33672559 CGCAACACTATAGTGCTACATAGTTAGACT
1 CGC-ACACT-TAGTGCTACATAGTTA-ACT
** * * *
33672589 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTTAACT
* **
33672616 CGCACACTTAGTGC-ATCATAATTCATTT
1 CGCACACTTAGTGCTA-CATAGTT-AACT
* **
33672644 CGCACAACTTAGTGCAACATAGTCGACAT
1 CGCAC-ACTTAGTGCTACATAGTTAAC-T
33672673 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33672688 GTACATCCCG
Statistics
Matches: 119, Mismatches: 27, Indels: 17
0.73 0.17 0.10
Matches are distributed among these distances:
26 13 0.11
27 35 0.29
28 32 0.27
29 33 0.28
30 6 0.05
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTTAACT
Done.