Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 106 of 325
Found at i:34148057 original size:17 final size:17
Alignment explanation
Indices: 34148031--34148077 Score: 76
Period size: 17 Copynumber: 2.8 Consensus size: 17
34148021 ATCTGACAAA
34148031 GCCCGATCAATGATAAT
1 GCCCGATCAATGATAAT
*
34148048 GCCTGATCAATGATAAT
1 GCCCGATCAATGATAAT
*
34148065 GCCCGATAAATGA
1 GCCCGATCAATGA
34148078 GAAATGATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.23
Consensus pattern (17 bp):
GCCCGATCAATGATAAT
Found at i:34148342 original size:44 final size:44
Alignment explanation
Indices: 34148274--34148387 Score: 156
Period size: 44 Copynumber: 2.6 Consensus size: 44
34148264 TGTTGCTGAT
* * * * * * *
34148274 AGGATTTAGCTCGAACGAGCAATCCTATTTACCTCATTACAGAA
1 AGGATTTAGCCCGGACGGGTAATCCTACTGACCTCATGACAGAA
34148318 AGGATTTAGCCCGGACGGGTAATCCTACTGACCTCATGACAGAA
1 AGGATTTAGCCCGGACGGGTAATCCTACTGACCTCATGACAGAA
*
34148362 AGGATTTAGCCCAGACGGGTAATCCT
1 AGGATTTAGCCCGGACGGGTAATCCT
34148388 GATATAAGTC
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (44 bp):
AGGATTTAGCCCGGACGGGTAATCCTACTGACCTCATGACAGAA
Found at i:34149397 original size:30 final size:30
Alignment explanation
Indices: 34149362--34149418 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
34149352 TTTATGAGCC
34149362 TAGGGGCAAAAA-TGTAATTTTGACAAAGTT
1 TAGGGG-AAAAATTGTAATTTTGACAAAGTT
*
34149392 TAGGGGAAAAATTGTAATTTTGCCAAA
1 TAGGGGAAAAATTGTAATTTTGACAAA
34149419 ATATGATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAATTGTAATTTTGACAAAGTT
Found at i:34156975 original size:20 final size:20
Alignment explanation
Indices: 34156948--34157015 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
34156938 ATGCGATCAC
34156948 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
*
34156968 ATACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
* *
34156988 ACATGCCCATGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
34157008 ACACGCCC
1 ACACGCCC
34157016 ATGTACTCAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.13, C:0.31, G:0.35, T:0.21
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:34160239 original size:19 final size:19
Alignment explanation
Indices: 34160215--34160252 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
34160205 AGGATACGGG
*
34160215 TTAGAGGTGTTACAGAGAT
1 TTAGAGGTGTTACAAAGAT
34160234 TTAGAGGTGTTACAAAGAT
1 TTAGAGGTGTTACAAAGAT
34160253 CCTCTTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (19 bp):
TTAGAGGTGTTACAAAGAT
Found at i:34161161 original size:10 final size:10
Alignment explanation
Indices: 34161146--34161180 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
34161136 TTATGTATTC
34161146 TAATTAAATT
1 TAATTAAATT
34161156 TAATTAAATAT
1 TAATTAAAT-T
*
34161167 TAAATAAATT
1 TAATTAAATT
34161177 TAAT
1 TAAT
34161181 ACATTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TAATTAAATT
Found at i:34161391 original size:16 final size:17
Alignment explanation
Indices: 34161370--34161407 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
34161360 TACCAACGAA
34161370 AATTTATAGTTGTTTC-
1 AATTTATAGTTGTTTCG
34161386 AATTTATAGTTGTTTCG
1 AATTTATAGTTGTTTCG
34161403 AATTT
1 AATTT
34161408 CGAAATGGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.26, C:0.05, G:0.13, T:0.55
Consensus pattern (17 bp):
AATTTATAGTTGTTTCG
Found at i:34161593 original size:21 final size:20
Alignment explanation
Indices: 34161556--34161597 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
34161546 TTATATTCAA
34161556 TACTCATTTAATATTAAAAT
1 TACTCATTTAATATTAAAAT
* * *
34161576 TACTTATTTTATATTTAAAT
1 TACTCATTTAATATTAAAAT
34161596 TA
1 TA
34161598 TTTTTAACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.52
Consensus pattern (20 bp):
TACTCATTTAATATTAAAAT
Found at i:34162261 original size:4 final size:4
Alignment explanation
Indices: 34162252--34162308 Score: 96
Period size: 4 Copynumber: 14.2 Consensus size: 4
34162242 TGGGATTGGA
* *
34162252 ACAT ACAT ACGT ACAT ACAT ACAT ACAT AAAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
34162300 ACAT ACAT A
1 ACAT ACAT A
34162309 TGTATGTATA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.51, C:0.23, G:0.02, T:0.25
Consensus pattern (4 bp):
ACAT
Found at i:34162749 original size:2 final size:2
Alignment explanation
Indices: 34162742--34162788 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
34162732 CAAATGCATA
34162742 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
34162784 AG AG A
1 AG AG A
34162789 AACCTAATAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:34188794 original size:40 final size:40
Alignment explanation
Indices: 34188732--34189030 Score: 390
Period size: 40 Copynumber: 7.5 Consensus size: 40
34188722 AAGCCAAGTA
* * *
34188732 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
34188771 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34188811 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34188851 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
34188891 CCTTCGGGACTTAGGCCGGATATAGTAACTCACACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
34188931 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
34188971 CCTTCGGGACTTATCCCGGA-ACTAGTCACTAGTGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
34189012 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34189031 TTATCATCCA
Statistics
Matches: 232, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
39 12 0.05
40 194 0.84
41 23 0.10
42 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34198409 original size:11 final size:11
Alignment explanation
Indices: 34198393--34198435 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 11
34198383 AAGTAATTTT
34198393 TCAATTCAATC
1 TCAATTCAATC
*
34198404 TCAATTCTAATTTT
1 TCAATTC-AA--TC
34198418 TCAATTCAATC
1 TCAATTCAATC
34198429 TCAATTC
1 TCAATTC
34198436 TAACCTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
11 15 0.56
12 2 0.07
13 2 0.07
14 8 0.30
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.44
Consensus pattern (11 bp):
TCAATTCAATC
Found at i:34198450 original size:30 final size:25
Alignment explanation
Indices: 34198386--34198438 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
34198376 TCTAGTTAAG
34198386 TAATTTTTCAATTCAATCTCAATTC
1 TAATTTTTCAATTCAATCTCAATTC
34198411 TAATTTTTCAATTCAATCTCAATTC
1 TAATTTTTCAATTCAATCTCAATTC
34198436 TAA
1 TAA
34198439 CCTTTTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (25 bp):
TAATTTTTCAATTCAATCTCAATTC
Found at i:34211215 original size:46 final size:46
Alignment explanation
Indices: 34211153--34211473 Score: 439
Period size: 46 Copynumber: 7.0 Consensus size: 46
34211143 AGTGTGCTCT
34211153 CTGATA-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
34211199 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
34211245 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
34211291 CTGATATGAAACGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
34211337 CAGATATGAAATGTGTAAGACCTTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * ** * *
34211383 GTGACAGGGAAATGAATAAGACCATGGTTGAATGATACCATTGCAAC
1 CTGATA-TGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
34211430 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
34211474 TCATGTCGAA
Statistics
Matches: 248, Mismatches: 24, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.00
46 207 0.83
47 40 0.16
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:34215762 original size:46 final size:46
Alignment explanation
Indices: 34215695--34215786 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
34215685 GATATACACA
*
34215695 TTACCAAACGTATTCACAAACTTCTAGCCTATACATGCCATACTTC
1 TTACCAAACATATTCACAAACTTCTAGCCTATACATGCCATACTTC
34215741 TTACCAAACATATTCACAAACTTCTAGCCTATACATGCCATACTTC
1 TTACCAAACATATTCACAAACTTCTAGCCTATACATGCCATACTTC
34215787 AATATATACA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.34, C:0.30, G:0.05, T:0.30
Consensus pattern (46 bp):
TTACCAAACATATTCACAAACTTCTAGCCTATACATGCCATACTTC
Found at i:34217358 original size:51 final size:51
Alignment explanation
Indices: 34217241--34217484 Score: 280
Period size: 51 Copynumber: 4.9 Consensus size: 51
34217231 TAGCCAAAGC
* * * * *
34217241 TATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* * * *
34217290 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGATCGAAGT
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* *
34217341 TATCAGGTATGCATAGTAGCCTGCATTTAGTACTACACACGTGATCGAAGT
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* * * *
34217392 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
* * * * *
34217441 AATCTGGTACACGTAGTAGCCTGCACTTAGTGCTACACACGTGA
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGA
34217485 CCTCACAATA
Statistics
Matches: 166, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 75 0.45
50 6 0.04
51 85 0.51
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (51 bp):
TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
Found at i:34217431 original size:100 final size:98
Alignment explanation
Indices: 34217241--34217486 Score: 298
Period size: 100 Copynumber: 2.5 Consensus size: 98
34217231 TAGCCAAAGC
* * *
34217241 TATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAG
*
34217306 TAGCCTGCACTTAGTACTACACACATGATCGA-AGT
66 TAGCCTGCACTTAGTACTA-ACACATG--CGACAAT
* * * * *
34217341 TATCAGGTATGCATAGTAGCCTGCATTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCAT
1 TATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACAT
34217406 AGTAGCCTGCACTTAGTACT-ACACATGCGACCAAT
64 AGTAGCCTGCACTTAGTACTAACACATGCGA-CAAT
* ** * *
34217441 AATCTGGTACACGTAGTAGCCTGCACTTAGTGCTACACACGTGACC
1 TATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACACGTGACC
34217487 TCACAATAGA
Statistics
Matches: 125, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
98 3 0.02
99 1 0.01
100 86 0.69
101 3 0.02
102 32 0.26
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (98 bp):
TATCTGGTATGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAG
TAGCCTGCACTTAGTACTAACACATGCGACAAT
Found at i:34218993 original size:43 final size:43
Alignment explanation
Indices: 34218927--34219082 Score: 131
Period size: 43 Copynumber: 3.6 Consensus size: 43
34218917 AGCTCGTACA
*
34218927 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGTAATCAAATATCG
*** *
34218970 ATGCC-ACTGTCCCAGACAGGGTCTTACACAAAATCATATAT-G
1 ATGCCAAC-GTCCCAGACAGGGTCTTACATGTAATCAAATATCG
* * * * * * *
34219012 ATGTCGATGTCCCAAATATGGTCTTACATGTAAATCATAA-GTCG
1 ATGCCAACGTCCCAGACAGGGTCTTACATGT-AATCA-AATATCG
*
34219056 ATGCCAACGTCCTAGAC-GTGGTCTTAC
1 ATGCCAACGTCCCAGACAG-GGTCTTAC
34219083 GCGAAAACAC
Statistics
Matches: 85, Mismatches: 22, Indels: 11
0.72 0.19 0.09
Matches are distributed among these distances:
42 24 0.28
43 40 0.47
44 21 0.25
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGTAATCAAATATCG
Found at i:34222569 original size:24 final size:24
Alignment explanation
Indices: 34222541--34222587 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
34222531 ACACATATTC
*
34222541 AATTCAATC-AATACAAATTCAATA
1 AATTC-ATCAAATACAAAATCAATA
34222565 AATTCATCAAATACAAAATCAAT
1 AATTCATCAAATACAAAATCAAT
34222588 CCATTTAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (24 bp):
AATTCATCAAATACAAAATCAATA
Found at i:34228807 original size:28 final size:28
Alignment explanation
Indices: 34228775--34228841 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
34228765 ACAGTGCATG
* *
34228775 CAGTAACAGTCTGGGCCTTAGCCCT-ATA
1 CAGTAACAGTATGGGCCTAAG-CCTAATA
*
34228803 CAGTAATAGTATGGGCCTAAGCCTAATA
1 CAGTAACAGTATGGGCCTAAGCCTAATA
*
34228831 CAGTATCAGTA
1 CAGTAACAGTA
34228842 CAATGTAATG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 3 0.09
28 30 0.91
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (28 bp):
CAGTAACAGTATGGGCCTAAGCCTAATA
Found at i:34229026 original size:27 final size:27
Alignment explanation
Indices: 34228996--34229055 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
34228986 AGTTGCCAGA
*
34228996 AACAGTAAATGTGGCAAAGCCACCAAT
1 AACAGTAAATGTGACAAAGCCACCAAT
** * *
34229023 AACAGTGGATGTGACATAGTCACCAAT
1 AACAGTAAATGTGACAAAGCCACCAAT
34229050 -ACAGTA
1 AACAGTA
34229056 CTTCCTCCAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (27 bp):
AACAGTAAATGTGACAAAGCCACCAAT
Found at i:34234603 original size:27 final size:27
Alignment explanation
Indices: 34234568--34234641 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
34234558 CCCCAAAATA
*
34234568 GGTAAAATGACCATAATACCACTGTAG
1 GGTAAAATGACCATAATACCACTATAG
*** * *
34234595 GGTAAAATGATTGTAATACCCCTATAT
1 GGTAAAATGACCATAATACCACTATAG
* *
34234622 GGTAAAATGACGATTATACC
1 GGTAAAATGACCATAATACC
34234642 TTTATGTTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (27 bp):
GGTAAAATGACCATAATACCACTATAG
Found at i:34234818 original size:27 final size:26
Alignment explanation
Indices: 34234769--34234820 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
34234759 TGGAGGAAGT
*
34234769 ACTATACTGGTGACTATGTCACATTC
1 ACTATACTGGTGACTATGCCACATTC
* *
34234795 ACTATTACTGGTGGCTTTGCCACATT
1 ACTA-TACTGGTGACTATGCCACATT
34234821 TACTGTTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (26 bp):
ACTATACTGGTGACTATGCCACATTC
Found at i:34237888 original size:40 final size:39
Alignment explanation
Indices: 34237775--34237906 Score: 142
Period size: 40 Copynumber: 3.3 Consensus size: 39
34237765 GATAACCGAA
* * * *
34237775 CTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATTCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATA-TCCGG
* * * *
34237815 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGG
34237854 TCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGG
1 -CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGG
34237894 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
34237907 ATACTTGGGT
Statistics
Matches: 76, Mismatches: 12, Indels: 9
0.78 0.12 0.09
Matches are distributed among these distances:
38 1 0.01
39 17 0.22
40 56 0.74
41 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (39 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGG
Found at i:34238174 original size:22 final size:22
Alignment explanation
Indices: 34238134--34238175 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
34238124 GAATGTGCAT
*
34238134 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
34238156 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
34238176 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:34245759 original size:40 final size:39
Alignment explanation
Indices: 34245641--34245777 Score: 143
Period size: 40 Copynumber: 3.4 Consensus size: 39
34245631 CGGATGATAA
* * *
34245641 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATT
1 CCGG-CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATA-T
* * * * *
34245682 CGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
34245721 CCGGTCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGG-CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
34245761 CCGGCTAA-ATCCCGAAG
1 CCGGCTAAGA-CCCGAAG
34245778 ATACTTGGGT
Statistics
Matches: 79, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
38 1 0.01
39 17 0.22
40 56 0.71
41 5 0.06
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (39 bp):
CCGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:34246045 original size:22 final size:22
Alignment explanation
Indices: 34246005--34246046 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
34245995 GAATGTGCAT
*
34246005 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
34246027 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
34246047 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:34249674 original size:26 final size:27
Alignment explanation
Indices: 34249642--34249705 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
34249632 CCTTAAAATA
34249642 GGTAAAATGACCAT-ATACTCC-TATAG
1 GGTAAAATGACCATAATAC-CCTTATAG
* * *
34249668 GGTAAAATGACCGTAATACCCTTGTAT
1 GGTAAAATGACCATAATACCCTTATAG
34249695 GGTAAAATGAC
1 GGTAAAATGAC
34249706 GATTATGTCC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 15 0.45
27 18 0.55
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.27
Consensus pattern (27 bp):
GGTAAAATGACCATAATACCCTTATAG
Found at i:34250085 original size:33 final size:30
Alignment explanation
Indices: 34250048--34250147 Score: 89
Period size: 33 Copynumber: 3.2 Consensus size: 30
34250038 TAATTGCATT
*
34250048 ACACTGTACTGATATTGTATTGGGCTTAGGCCC
1 ACACTGTACTGATA-T-TA-TGGGCTAAGGCCC
34250081 ACACTGTTACT-ATA-TA-GGGCTAAGGCCC
1 ACACTG-TACTGATATTATGGGCTAAGGCCC
* *
34250109 AGACTGTACTGTTACTATATAGGGCTAAGGCCC
1 ACACTGTACTGATA-T-TAT-GGGCTAAGGCCC
34250142 ACACTG
1 ACACTG
34250148 CACTATTTAC
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
27 4 0.07
28 18 0.32
30 2 0.04
31 2 0.04
33 26 0.46
34 4 0.07
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (30 bp):
ACACTGTACTGATATTATGGGCTAAGGCCC
Found at i:34250101 original size:28 final size:28
Alignment explanation
Indices: 34250069--34250147 Score: 104
Period size: 33 Copynumber: 2.6 Consensus size: 28
34250059 ATATTGTATT
*
34250069 GGGCTTAGGCCCACACTGTTACTATATA
1 GGGCTAAGGCCCACACTGTTACTATATA
34250097 GGGCTAAGGCCCAGACTGTACTGTTACTATATA
1 GGGCTAAGGCCC--AC---ACTGTTACTATATA
34250130 GGGCTAAGGCCCACACTG
1 GGGCTAAGGCCCACACTG
34250148 CACTATTTAC
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
28 15 0.33
30 2 0.04
31 2 0.04
33 26 0.58
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (28 bp):
GGGCTAAGGCCCACACTGTTACTATATA
Found at i:34252192 original size:42 final size:42
Alignment explanation
Indices: 34252082--34252240 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 42
34252072 TGGTATGTAT
* **
34252082 TTTCATGTAAGACCACGTCTGGGATGTTGGCATCG-ACTTATGA
1 TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGA
* * *
34252125 TTTACGTGTAAGACTATGTCAGGGACATTGGCATCGTATTTGA
1 TTT-CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGA
* *
34252168 TTTTGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGA
1 TTTCGTGTAAGACCAC-GTCTGGGACATTGGCATCG-TATTTGA
* * *
34252211 TTACATGTAAGACCACGTCTGGGACGTTGG
1 TTTCGTGTAAGACCACGTCTGGGACATTGG
34252241 GATTGTACAA
Statistics
Matches: 95, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 26 0.27
43 39 0.41
44 29 0.31
45 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGA
Found at i:34254725 original size:25 final size:25
Alignment explanation
Indices: 34254704--34254796 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 25
34254694 GTTCCAACCA
*
34254704 ATAACTCGTATGAGCATACCAATTT
1 ATAACTCGTATGAGCATACCAATCT
* **
34254729 ATAGCTCGT-TAGAGCATACTGATCT
1 ATAACTCGTAT-GAGCATACCAATCT
*
34254754 ATAACTCGTATGAGCATACCGAT-T
1 ATAACTCGTATGAGCATACCAATCT
*
34254778 ACAACTCGTAT-ATGCATAC
1 ATAACTCGTATGA-GCATAC
34254797 ATGTACATGA
Statistics
Matches: 58, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
23 1 0.02
24 18 0.31
25 38 0.66
26 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (25 bp):
ATAACTCGTATGAGCATACCAATCT
Found at i:34258294 original size:40 final size:40
Alignment explanation
Indices: 34258234--34258417 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
34258224 TATTCAAATG
* *
34258234 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
34258274 ATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
34258314 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
34258354 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
34258394 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
34258418 CTTGTGCGAG
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 2 0.02
40 121 0.97
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:34258367 original size:80 final size:80
Alignment explanation
Indices: 34258234--34258453 Score: 270
Period size: 80 Copynumber: 2.8 Consensus size: 80
34258224 TATTCAAATG
* * * *
34258234 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCTGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGATCCCGAAGGC
* *
34258298 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
*
34258314 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGATCCCGAAGGC
*
34258378 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * **
34258394 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGATCCCGAAG
34258454 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 89 0.72
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGATCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:34262612 original size:51 final size:51
Alignment explanation
Indices: 34262535--34262733 Score: 292
Period size: 51 Copynumber: 3.9 Consensus size: 51
34262525 CGGATACACG
* * *
34262535 GTGGCCTTCACATAGCACCACCCTTGTAG-CCAAAACTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGT-GTCCAAAGCTATTTTATTCACAAA
34262586 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* * * * *
34262637 GTGGCCTTCATATAGAACCACACTTGGGCCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
* *
34262688 GTGGCCTTCCCATAGTACCACTCTTGTGTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTC
34262734 CTAAGGTTCA
Statistics
Matches: 132, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
50 1 0.01
51 131 0.99
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTTTATTCACAAA
Found at i:34262813 original size:52 final size:52
Alignment explanation
Indices: 34262757--34262874 Score: 200
Period size: 52 Copynumber: 2.3 Consensus size: 52
34262747 GGAAAATTTC
34262757 TCACTTAGCACAATGCAATGGACTTATTTCACTTAGATGCCATGGACTTATT
1 TCACTTAGCACAATGCAATGGACTTATTTCACTTAGATGCCATGGACTTATT
* * * *
34262809 TCACTTAGCACATTGCCATGGACTTATTTCACTTAGATGTCATGGTCTTATT
1 TCACTTAGCACAATGCAATGGACTTATTTCACTTAGATGCCATGGACTTATT
34262861 TCACTTAGCACAAT
1 TCACTTAGCACAAT
34262875 TTCGTATCCT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.36
Consensus pattern (52 bp):
TCACTTAGCACAATGCAATGGACTTATTTCACTTAGATGCCATGGACTTATT
Found at i:34262834 original size:28 final size:27
Alignment explanation
Indices: 34262757--34262872 Score: 145
Period size: 24 Copynumber: 4.4 Consensus size: 27
34262747 GGAAAATTTC
*
34262757 TCACTTAGCACAATGCAATGGACTTATT
1 TCACTTAGCAC-ATGCCATGGACTTATT
34262785 TCACTTAG---ATGCCATGGACTTATT
1 TCACTTAGCACATGCCATGGACTTATT
34262809 TCACTTAGCACATTGCCATGGACTTATT
1 TCACTTAGCACA-TGCCATGGACTTATT
* *
34262837 TCACTTAG---ATGTCATGGTCTTATT
1 TCACTTAGCACATGCCATGGACTTATT
34262861 TCACTTAGCACA
1 TCACTTAGCACA
34262873 ATTTCGTATC
Statistics
Matches: 78, Mismatches: 3, Indels: 15
0.81 0.03 0.16
Matches are distributed among these distances:
24 44 0.56
25 1 0.01
27 2 0.03
28 31 0.40
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (27 bp):
TCACTTAGCACATGCCATGGACTTATT
Found at i:34266524 original size:24 final size:26
Alignment explanation
Indices: 34266497--34266545 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
34266487 AGTTCATGCA
34266497 ATATTAAAGC-ATTTAA-ATACAATT
1 ATATTAAAGCTATTTAACATACAATT
34266521 ATATTAAAGCTTATTTAACATACAA
1 ATATTAAAGC-TATTTAACATACAA
34266546 ACTTGCCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (26 bp):
ATATTAAAGCTATTTAACATACAATT
Found at i:34268982 original size:25 final size:25
Alignment explanation
Indices: 34268954--34269036 Score: 103
Period size: 25 Copynumber: 3.3 Consensus size: 25
34268944 TCATGTACAT
34268954 GTATGCTCACACGAGCTGTAGATCA
1 GTATGCTCACACGAGCTGTAGATCA
* * * * *
34268979 GTATGCTCTCATGAGCTATAAATCG
1 GTATGCTCACACGAGCTGTAGATCA
* *
34269004 GTATACTTACACGAGCTGTAGATCA
1 GTATGCTCACACGAGCTGTAGATCA
34269029 GTATGCTC
1 GTATGCTC
34269037 TTGCGAGCTA
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAGATCA
Found at i:34269066 original size:50 final size:50
Alignment explanation
Indices: 34268954--34269068 Score: 158
Period size: 50 Copynumber: 2.3 Consensus size: 50
34268944 TCATGTACAT
*
34268954 GTATGCTCACACGAGCTGTAGATCAGTATGCTCTCATGAGCTATAAATCG
1 GTATGCTCACACGAGCTGTAGATCAGTATGCTCTCACGAGCTATAAATCG
* * ** * *
34269004 GTATACTTACACGAGCTGTAGATCAGTATGCTCTTGCGAGCTATATATTG
1 GTATGCTCACACGAGCTGTAGATCAGTATGCTCTCACGAGCTATAAATCG
*
34269054 GTATGGTCACACGAG
1 GTATGCTCACACGAG
34269069 TTATGGGTCA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (50 bp):
GTATGCTCACACGAGCTGTAGATCAGTATGCTCTCACGAGCTATAAATCG
Found at i:34270908 original size:22 final size:22
Alignment explanation
Indices: 34270883--34270924 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
34270873 GGGAGAAATC
34270883 TATACGTACCAGAATAAAATGT
1 TATACGTACCAGAATAAAATGT
34270905 TATACGTACCAGAATAAAAT
1 TATACGTACCAGAATAAAAT
34270925 ATGCAGACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.48, C:0.14, G:0.12, T:0.26
Consensus pattern (22 bp):
TATACGTACCAGAATAAAATGT
Found at i:34278818 original size:24 final size:24
Alignment explanation
Indices: 34278791--34278842 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
34278781 AGCTAGTTGA
*
34278791 ATTGTACAGTGTTGAGGTTGTTAG
1 ATTGTACAGTGCTGAGGTTGTTAG
34278815 ATTGTACAGTGCTGAGGTTGTTAG
1 ATTGTACAGTGCTGAGGTTGTTAG
34278839 ATTG
1 ATTG
34278843 CACGGGGCGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.21, C:0.06, G:0.33, T:0.40
Consensus pattern (24 bp):
ATTGTACAGTGCTGAGGTTGTTAG
Found at i:34281908 original size:15 final size:17
Alignment explanation
Indices: 34281878--34281909 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
34281868 TTGATACTTG
34281878 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
34281895 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
34281910 AATAATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:34283671 original size:15 final size:15
Alignment explanation
Indices: 34283648--34283678 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
34283638 TAGGTCGTTG
34283648 AGCACGAATTGGATT
1 AGCACGAATTGGATT
*
34283663 AGCATGAATTGGATT
1 AGCACGAATTGGATT
34283678 A
1 A
34283679 ATACTCGGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.10, G:0.26, T:0.29
Consensus pattern (15 bp):
AGCACGAATTGGATT
Found at i:34306859 original size:19 final size:19
Alignment explanation
Indices: 34306835--34306879 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
34306825 AAATGAATCG
34306835 GTAACTCAGGTAATGCTCC
1 GTAACTCAGGTAATGCTCC
*
34306854 GTAACTCAGGTGATGCTCC
1 GTAACTCAGGTAATGCTCC
34306873 GTAACTC
1 GTAACTC
34306880 TATTCCGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (19 bp):
GTAACTCAGGTAATGCTCC
Found at i:34307723 original size:2 final size:2
Alignment explanation
Indices: 34307698--34307740 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
34307688 TCTAACTAAA
* * *
34307698 AC AC AA AC AC AA AC AC AA AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
34307740 A
1 A
34307741 AAAAAAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.58, C:0.42, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:34309395 original size:111 final size:113
Alignment explanation
Indices: 34309257--34309554 Score: 275
Period size: 114 Copynumber: 2.6 Consensus size: 113
34309247 GATCTTTTGG
* * * * *
34309257 TGAAGAAGAAGGCAAGCGTGCTAATAGAGAGAGGAGCGAAGAAAGTGAAAGAATTCATG-C-TGA
1 TGAAGAAGATGGCAAGCTTCCTAATAGAGAGAGAAGCGAAGAAAGAGAAAGAATTCATGACGTGA
*
34309320 TAATGATAGTAAGGATAGGCAGAGAGAA-AAACGTCCTAGATCCTCTGA
66 TAATGATAGTAAGGATAGGCAGAGAGAAGAAACGT-CAAGATCCTCTGA
* * ** *
34309368 TGAAGAAGATGGCAAGCATTCCT-ATAGAGATAGAAGGGGTGAAAGAGAGAGAATTCATGACGGT
1 TGAAGAAGATGGCAAGC-TTCCTAATAGAGAGAGAAGCGAAGAAAGAGAAAGAATTCATGAC-GT
* * * ** *
34309432 GATGATGATGGTAAGGATAGGCGGAGAGAAGAAGGGTCAAGATCTTCTGA
64 GATAATGATAGTAAGGATAGGCAGAGAGAAGAAACGTCAAGATCCTCTGA
* * * * * * *
34309482 TGAAGAAGATGACAAGCCTTCCT-TTAGGGATAGAAG-GCATGAAAGAGATAGAATTCGTGACGG
1 TGAAGAAGATGGCAAG-CTTCCTAATAGAGAGAGAAGCG-AAGAAAGAGAAAGAATTCATGAC-G
*
34309545 TGAAAATGAT
63 TGATAATGAT
34309555 TCCAAGGCTA
Statistics
Matches: 155, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
111 45 0.29
112 4 0.03
113 1 0.01
114 100 0.65
115 5 0.03
ACGTcount: A:0.39, C:0.10, G:0.32, T:0.19
Consensus pattern (113 bp):
TGAAGAAGATGGCAAGCTTCCTAATAGAGAGAGAAGCGAAGAAAGAGAAAGAATTCATGACGTGA
TAATGATAGTAAGGATAGGCAGAGAGAAGAAACGTCAAGATCCTCTGA
Found at i:34309485 original size:114 final size:114
Alignment explanation
Indices: 34309297--34309554 Score: 317
Period size: 114 Copynumber: 2.3 Consensus size: 114
34309287 GAGGAGCGAA
* *
34309297 GAAAGTGAAAGAATTCATG-C--TGATAATGATAGTAAGGATAGGCAGAGAGAAAAACGTCCTAG
1 GAAAGAGAAAGAATTCATGACGGTGATAATGATAGTAAGGATAGGCAGAGAGAAAAACGTCCAAG
* **
34309359 ATCCTCTGATGAAGAAGATGGCAAGCATTCCTATAGAGATAGAAGGGGT
66 ATCCTCTGATGAAGAAGATGACAAGCATTCCTATAGAGATAGAAGGCAT
* * * * **
34309408 GAAAGAGAGAGAATTCATGACGGTGATGATGATGGTAAGGATAGGCGGAGAGAAGAAGGGT-CAA
1 GAAAGAGAAAGAATTCATGACGGTGATAATGATAGTAAGGATAGGCAGAGAGAA-AAACGTCCAA
* * * *
34309472 GATCTTCTGATGAAGAAGATGACAAGCCTTCCTTTAGGGATAGAAGGCAT
65 GATCCTCTGATGAAGAAGATGACAAGCATTCCTATAGAGATAGAAGGCAT
* * *
34309522 GAAAGAGATAGAATTCGTGACGGTGAAAATGAT
1 GAAAGAGAAAGAATTCATGACGGTGATAATGAT
34309555 TCCAAGGCTA
Statistics
Matches: 124, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
111 17 0.14
112 1 0.01
114 102 0.82
115 4 0.03
ACGTcount: A:0.38, C:0.10, G:0.31, T:0.21
Consensus pattern (114 bp):
GAAAGAGAAAGAATTCATGACGGTGATAATGATAGTAAGGATAGGCAGAGAGAAAAACGTCCAAG
ATCCTCTGATGAAGAAGATGACAAGCATTCCTATAGAGATAGAAGGCAT
Found at i:34319885 original size:40 final size:43
Alignment explanation
Indices: 34319787--34319888 Score: 129
Period size: 43 Copynumber: 2.4 Consensus size: 43
34319777 CATTGCCATA
* *
34319787 TCCCAGATATGGTCTTACATGCGATCACATACCGATGCCACTG
1 TCCCAGATATGGTCTTACATGCAATCACATACCGATGCCACAG
* *
34319830 TCCCAGATAGGGTCTTACATG-AATCATATA-CGATGCCA-AG
1 TCCCAGATATGGTCTTACATGCAATCACATACCGATGCCACAG
* *
34319870 TCCCAGACATAGTCTTACA
1 TCCCAGATATGGTCTTACA
34319889 CATTTTCTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 17 0.33
41 8 0.15
42 7 0.13
43 20 0.38
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
TCCCAGATATGGTCTTACATGCAATCACATACCGATGCCACAG
Found at i:34323536 original size:40 final size:40
Alignment explanation
Indices: 34323407--34323623 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
34323397 AAGCCAAGTA
* * *
34323407 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
34323445 CCTTCGGGACATAGCCCGGATATAGTAACTCGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34323484 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34323524 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34323564 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
34323605 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34323624 TTATCATCCA
Statistics
Matches: 163, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
38 12 0.07
39 55 0.34
40 68 0.42
41 24 0.15
42 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34332526 original size:40 final size:43
Alignment explanation
Indices: 34332428--34332529 Score: 129
Period size: 43 Copynumber: 2.4 Consensus size: 43
34332418 CATTGCCATA
* *
34332428 TCCCAGATATGGTCTTACATGCGATCACATACCGATGCCACTG
1 TCCCAGATATGGTCTTACATGCAATCACATACCGATGCCACAG
* *
34332471 TCCCAGATAGGGTCTTACATG-AATCATATA-CGATGCCA-AG
1 TCCCAGATATGGTCTTACATGCAATCACATACCGATGCCACAG
* *
34332511 TCCCAGACATAGTCTTACA
1 TCCCAGATATGGTCTTACA
34332530 CATTTTCTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 17 0.33
41 8 0.15
42 7 0.13
43 20 0.38
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
TCCCAGATATGGTCTTACATGCAATCACATACCGATGCCACAG
Found at i:34336173 original size:40 final size:40
Alignment explanation
Indices: 34336044--34336258 Score: 298
Period size: 39 Copynumber: 5.5 Consensus size: 40
34336034 AAGCCAAGTA
* * *
34336044 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
34336082 CCTTCGGGACATAGCCCGGATATAGTAACTCGCAC-CATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34336121 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
34336161 CCTTCGGGACTTAGCCCGGATATA-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
34336200 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTGGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
34336240 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34336259 TTATCATCCA
Statistics
Matches: 162, Mismatches: 10, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 13 0.08
39 91 0.56
40 58 0.36
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34336176 original size:79 final size:78
Alignment explanation
Indices: 34336044--34336258 Score: 294
Period size: 79 Copynumber: 2.7 Consensus size: 78
34336034 AAGCCAAGTA
* * * *
34336044 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA-
*
34336107 TAACTCGCAC-CATG
64 TAACTCGCACAAATG
34336121 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAT
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAT
34336186 AACTCGCACAAATG
65 AACTCGCACAAATG
* *
34336200 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTGGCGCAAATGCCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
34336259 TTATCATCCA
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
77 13 0.10
78 28 0.22
79 84 0.67
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATATA
ACTCGCACAAATG
Found at i:34344208 original size:40 final size:40
Alignment explanation
Indices: 34344123--34344340 Score: 257
Period size: 40 Copynumber: 5.5 Consensus size: 40
34344113 AAGCCAAGTA
* * * *
34344123 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
34344161 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34344201 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
34344241 CCTTCGGGACTTAGCCCGGATGTAATAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
34344281 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
34344322 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
34344341 TTATCATCCA
Statistics
Matches: 156, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 12 0.08
39 16 0.10
40 101 0.65
41 24 0.15
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:34352959 original size:5 final size:5
Alignment explanation
Indices: 34352949--34353018 Score: 52
Period size: 5 Copynumber: 12.8 Consensus size: 5
34352939 TTTTTCTCGT
**
34352949 TTTTC TTTTC TTTTTC ATTTTC TTTTC TTTT- TTCAC ATTCATTC TTTTC
1 TTTTC TTTTC -TTTTC -TTTTC TTTTC TTTTC TTTTC -TT--TTC TTTTC
34352998 TTTTTC ATTTTC TTTTC TTTT
1 -TTTTC -TTTTC TTTTC TTTT
34353019 TTTCACATTC
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
4 2 0.04
5 26 0.49
6 22 0.42
7 2 0.04
8 1 0.02
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (5 bp):
TTTTC
Found at i:34352971 original size:17 final size:17
Alignment explanation
Indices: 34352949--34353019 Score: 97
Period size: 17 Copynumber: 3.9 Consensus size: 17
34352939 TTTTTCTCGT
34352949 TTTTCTTTTCTTTTTCA
1 TTTTCTTTTCTTTTTCA
34352966 TTTTCTTTTCTTTTTTCACA
1 TTTTCTTTTC-TTTTT--CA
34352986 TTCATTCTTTTCTTTTTCA
1 TT--TTCTTTTCTTTTTCA
34353005 TTTTCTTTTCTTTTT
1 TTTTCTTTTCTTTTT
34353020 TTCACATTCA
Statistics
Matches: 49, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
17 23 0.47
18 5 0.10
19 4 0.08
20 4 0.08
21 5 0.10
22 8 0.16
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (17 bp):
TTTTCTTTTCTTTTTCA
Found at i:34352994 original size:39 final size:40
Alignment explanation
Indices: 34352951--34353043 Score: 170
Period size: 40 Copynumber: 2.4 Consensus size: 40
34352941 TTTCTCGTTT
34352951 TTCTTTTCTTTTTCATTTTCTTTTC-TTTTTTCACATTCA
1 TTCTTTTCTTTTTCATTTTCTTTTCTTTTTTTCACATTCA
34352990 TTCTTTTCTTTTTCATTTTCTTTTCTTTTTTTCACATTCA
1 TTCTTTTCTTTTTCATTTTCTTTTCTTTTTTTCACATTCA
*
34353030 TTCTTTTTTTTTTC
1 TTCTTTTCTTTTTC
34353044 TCTCAATTGA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 25 0.48
40 27 0.52
ACGTcount: A:0.09, C:0.19, G:0.00, T:0.72
Consensus pattern (40 bp):
TTCTTTTCTTTTTCATTTTCTTTTCTTTTTTTCACATTCA
Found at i:34353036 original size:17 final size:18
Alignment explanation
Indices: 34352976--34353039 Score: 65
Period size: 18 Copynumber: 3.3 Consensus size: 18
34352966 TTTTCTTTTC
34352976 TTTTTTCACATTCATTCTTT
1 TTTTTTCACATTCATTC--T
** *
34352996 TCTTTTTCATTTTCTTTTCT
1 T-TTTTTCACATTC-ATTCT
34353016 TTTTTTCACATTCATTCT
1 TTTTTTCACATTCATTCT
34353034 TTTTTT
1 TTTTTT
34353040 TTTCTCTCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
18 10 0.28
19 10 0.28
20 3 0.08
21 10 0.28
22 3 0.08
ACGTcount: A:0.11, C:0.19, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTTTCACATTCATTCT
Found at i:34353037 original size:19 final size:19
Alignment explanation
Indices: 34352976--34353040 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
34352966 TTTTCTTTTC
34352976 TTTTTTCACATTCATTCTTT
1 TTTTTTCACATTCATTC-TT
** *
34352996 TCTTTTTCATTTTC-TTTTCT
1 T-TTTTTCACATTCATTCT-T
34353016 TTTTTTCACATTCATTCTT
1 TTTTTTCACATTCATTCTT
34353035 TTTTTT
1 TTTTTT
34353041 TTCTCTCAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 7
0.73 0.12 0.14
Matches are distributed among these distances:
19 18 0.50
20 8 0.22
21 10 0.28
ACGTcount: A:0.11, C:0.18, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTTTCACATTCATTCTT
Found at i:34354582 original size:13 final size:13
Alignment explanation
Indices: 34354564--34354589 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34354554 AAATTACAAC
34354564 AGACACACGCTCG
1 AGACACACGCTCG
34354577 AGACACACGCTCG
1 AGACACACGCTCG
34354590 TGTGCTCAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.23, T:0.08
Consensus pattern (13 bp):
AGACACACGCTCG
Found at i:34355966 original size:29 final size:29
Alignment explanation
Indices: 34355905--34355994 Score: 119
Period size: 29 Copynumber: 3.1 Consensus size: 29
34355895 CACATACCTG
*
34355905 TATATGGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
34355933 TATATGACCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * * *
34355962 TATATGGCTCATCAGACCCAATTCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
34355991 TATA
1 TATA
34355995 GTCATGCTCA
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 17 0.31
29 37 0.69
ACGTcount: A:0.32, C:0.28, G:0.11, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:34357382 original size:20 final size:20
Alignment explanation
Indices: 34357357--34357394 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
34357347 GTACCAACTT
*
34357357 ACAACATACCATTATCTTCC
1 ACAACATACCATAATCTTCC
34357377 ACAACATACCATAATCTT
1 ACAACATACCATAATCTT
34357395 TCATAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.29
Consensus pattern (20 bp):
ACAACATACCATAATCTTCC
Found at i:34364363 original size:43 final size:43
Alignment explanation
Indices: 34364281--34364363 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
34364271 TGAGGTATGT
* * *
34364281 AGCATCCAAGCTCGTTGAGAGGTCCGAGTTTATTATGGATGCG
1 AGCATCCAAGCTCGCTGAGAGGTCCGAGTTCATGATGGATGCG
* * * *
34364324 AGCATCCGAGCTCGCTGAGTGGTCTGAGTTCATGGTGGAT
1 AGCATCCAAGCTCGCTGAGAGGTCCGAGTTCATGATGGAT
34364364 ACGATTTATG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.28
Consensus pattern (43 bp):
AGCATCCAAGCTCGCTGAGAGGTCCGAGTTCATGATGGATGCG
Found at i:34366140 original size:21 final size:21
Alignment explanation
Indices: 34366116--34366156 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
34366106 AAAATATAAA
34366116 TTACAACTCATAAATATTTTT
1 TTACAACTCATAAATATTTTT
* * *
34366137 TTACAATTTATAATTATTTT
1 TTACAACTCATAAATATTTT
34366157 ATCAAATCAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.54
Consensus pattern (21 bp):
TTACAACTCATAAATATTTTT
Found at i:34366870 original size:48 final size:47
Alignment explanation
Indices: 34366782--34367198 Score: 260
Period size: 46 Copynumber: 8.8 Consensus size: 47
34366772 CATAGGGTAT
34366782 AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTC
1 AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTC
*
34366829 AATGCCGA-GCCATGCCCCAGACATGTGTTTTACACTAGCTCTCGTCTC
1 AATGCCGATGCCATGTCCCAGACA--TGTTTTACACTAGCTCTCGTCTC
* *
34366877 AATGCCGA-GCCATGTCCCAGACATGTTTTACACTAGCTGTCATCTC
1 AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTC
* * * * * ** *
34366923 AATACCGATGACATGTCCCAGACATGGTCTTACA-TTGACTATCGAAGTT
1 AATGCCGATGCCATGTCCCAGACAT-GTTTTACACTAG-CTCTCG-TCTC
* * ** ** * * * *
34366972 GAGGTTGACACCATGTCCCAAACATGGTCTTACACTAGCTCTCACATATC
1 AATGCCGATGCCATGTCCCAGACAT-GTTTTACACTAGCTCT--CGTCTC
** ** * * * *
34367022 CGTGCCGATGCCATGTCTTAGACATGGTCTTACACT-G-ACACATCTC
1 AATGCCGATGCCATGTCCCAGACAT-GTTTTACACTAGCTCTCGTCTC
* * * * *
34367068 -GTAGCCGATG-CATGTTCCAGACATGTCTTACATTAGCTCTTGTCTC
1 AAT-GCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTC
* * * * * * *
34367114 AATGCCAATGCCATGTCCCAGAAAAGGTCTTACACTGGCTCTC--ATA
1 AATGCCGATGCCATGTCCCAG-ACATGTTTTACACTAGCTCTCGTCTC
* *
34367160 ATATGGCCAATG-CATGTCCCAGACATGTCTTACACTAGC
1 A-AT-GCCGATGCCATGTCCCAGACATGTTTTACACTAGC
34367199 ACACACACAT
Statistics
Matches: 291, Mismatches: 62, Indels: 35
0.75 0.16 0.09
Matches are distributed among these distances:
44 9 0.03
45 14 0.05
46 81 0.28
47 47 0.16
48 80 0.27
49 30 0.10
50 29 0.10
51 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTC
Found at i:34366901 original size:94 final size:95
Alignment explanation
Indices: 34366782--34366956 Score: 273
Period size: 94 Copynumber: 1.9 Consensus size: 95
34366772 CATAGGGTAT
* * *
34366782 AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCGTCTCAATGCCGA-GCCATGCCC
1 AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCATCTCAATACCGATGACATGCCC
*
34366846 CAGACATGTGTTTTACACTAGCTCTCGTCTC
66 CAGACATG-GTCTTACACTAGCTCTCGTCTC
* *
34366877 AATGCCGA-GCCATGTCCCAGACATGTTTTACACTAGCTGTCATCTCAATACCGATGACATGTCC
1 AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCATCTCAATACCGATGACATGCCC
34366941 CAGACATGGTCTTACA
66 CAGACATGGTCTTACA
34366957 TTGACTATCG
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
94 50 0.68
95 23 0.32
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (95 bp):
AATGCCGATGCCATGTCCCAGACATGTTTTACACTAGCTCTCATCTCAATACCGATGACATGCCC
CAGACATGGTCTTACACTAGCTCTCGTCTC
Found at i:34369968 original size:36 final size:37
Alignment explanation
Indices: 34369923--34369999 Score: 129
Period size: 36 Copynumber: 2.1 Consensus size: 37
34369913 AGGCCTTGTA
*
34369923 ACTTGTCCCGATCTCGGGTACGGGTAATGGGTGTTAC
1 ACTTGTCCCGATCTCGGGTACGGGTAAGGGGTGTTAC
*
34369960 ACTT-TCCCGATCTTGGGTACGGGTAAGGGGTGTTAC
1 ACTTGTCCCGATCTCGGGTACGGGTAAGGGGTGTTAC
34369996 ACTT
1 ACTT
34370000 ACACATGCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
36 34 0.89
37 4 0.11
ACGTcount: A:0.17, C:0.21, G:0.31, T:0.31
Consensus pattern (37 bp):
ACTTGTCCCGATCTCGGGTACGGGTAAGGGGTGTTAC
Found at i:34385009 original size:3 final size:3
Alignment explanation
Indices: 34385001--34385031 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
34384991 CGAGAAGCTA
34385001 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG T
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG T
34385032 AGGTCTTCTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.65, T:0.35
Consensus pattern (3 bp):
TGG
Found at i:34385966 original size:257 final size:258
Alignment explanation
Indices: 34385504--34386022 Score: 968
Period size: 257 Copynumber: 2.0 Consensus size: 258
34385494 CCGAGGATCG
* *
34385504 TACCTAAGGGAGGCGAGAACTACATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
1 TACCAAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
34385569 AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
66 AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
* *
34385634 TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATGAGCATGGATGAT
131 TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATAAGCATGAATGAT
*
34385699 TAGCTCGCTTCGGCTGTCATAAATAATTATTGCTTTGGGTTCCTTGTTAAATCAACTATTCGT
196 TAGCTCGCTTCGGCTGTCATAAATAATTATTGCTTTGGGTTCCTTATTAAATCAACTATTCGT
34385762 TACCAAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
1 TACCAAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
34385827 AAATAAATTATACTATGAATAGACATAAAG-AATATTTTTGGTATTTTTATAAATAAAGAAAAAA
66 AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
34385891 TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATAAGCATGAATGAT
131 TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATAAGCATGAATGAT
* *
34385956 TAGCTCGCTTCGGTTGTCATAAATAATTGTTGCTTTGGGTTCCTTATTAAATCAACTATTCGT
196 TAGCTCGCTTCGGCTGTCATAAATAATTATTGCTTTGGGTTCCTTATTAAATCAACTATTCGT
34386019 TACC
1 TACC
34386023 CTAGTAGGAT
Statistics
Matches: 254, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
257 161 0.63
258 93 0.37
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (258 bp):
TACCAAAGGGAGGCGAGAACTAAATTAATCCTAACCTAAGCACAAATAAAGCTAAGTAGTGCTTT
AAATAAATTATACTATGAATAGACATAAAGAAATATTTTTGGTATTTTTATAAATAAAGAAAAAA
TACTAGAAAGGGAAGACTATGAGAAATTTGATATGGAAACTAAATCAGATATAAGCATGAATGAT
TAGCTCGCTTCGGCTGTCATAAATAATTATTGCTTTGGGTTCCTTATTAAATCAACTATTCGT
Found at i:34400121 original size:28 final size:28
Alignment explanation
Indices: 34399848--34400121 Score: 214
Period size: 28 Copynumber: 9.8 Consensus size: 28
34399838 ATTTCGTAGA
* * *
34399848 TCGCCATAAAGGCTTCCCTATCTATAGAT
1 TCGCCACAAAGGCTTCCCTTTTTATAG-T
* * * *
34399877 T-GCAACAAAGTCTTTCCTTCTTATAGAT
1 TCGCCACAAAGGCTTCCCTTTTTATAG-T
* * * * *
34399905 T-TCCAGAAATGCTTCCTTTTTTATAAT
1 TCGCCACAAAGGCTTCCCTTTTTATAGT
** * *
34399932 TTTCCACAAAAGCTTCCCTTTTCATAG-
1 TCGCCACAAAGGCTTCCCTTTTTATAGT
* *
34399959 TCGCCAAAAAGGCTTTCCTTTTTATAGT
1 TCGCCACAAAGGCTTCCCTTTTTATAGT
* * * *
34399987 TCACCACTAAGGCTTCACTTTTCATAGAT
1 TCGCCACAAAGGCTTCCCTTTTTATAG-T
*
34400016 T-GCCACAAAGACTTCCCTTTTTATAGT
1 TCGCCACAAAGGCTTCCCTTTTTATAGT
* * *
34400043 TTGCCATAAAGGCTTCCCTTTTCATAGT
1 TCGCCACAAAGGCTTCCCTTTTTATAGT
* ***
34400071 TTGTTGCAAAGGCTTCCCTTTTTATAGT
1 TCGCCACAAAGGCTTCCCTTTTTATAGT
*
34400099 TCGCAACAAAGGCTTCCCTTTTT
1 TCGCCACAAAGGCTTCCCTTTTT
34400122 TTAACGTCTT
Statistics
Matches: 191, Mismatches: 50, Indels: 9
0.76 0.20 0.04
Matches are distributed among these distances:
27 25 0.13
28 163 0.85
29 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (28 bp):
TCGCCACAAAGGCTTCCCTTTTTATAGT
Found at i:34412654 original size:213 final size:213
Alignment explanation
Indices: 34412283--34412698 Score: 742
Period size: 213 Copynumber: 2.0 Consensus size: 213
34412273 TTATCAATCT
*
34412283 TGTATTCAATTTCACATCAATAGCATGTACACAATTCATACATACAATATTCAATTTAAGCATAT
1 TGTATTCAATTTCACATCAATAGCATGTAAACAATTCATACATACAATATTCAATTTAAGCATAT
* * *
34412348 AAATAAACACAATTTAGTTACACGAACTTACCTCAATACTTGTTCTTATACGAAAATCTACTAAT
66 AAATAAACACAATTTAATTACACGAACTTACATCAATACTTGTTCGTATACGAAAATCTACTAAT
*
34412413 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGAATCTATATAAATGAAT
131 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGCTCTTTTCGAATCTATATAAATGAAT
34412478 TTAATCATGAATTTATCA
196 TTAATCATGAATTTATCA
*
34412496 TGTATTCAATTTCACATCAATAGCATTTAAACAATTCATACATACAATATTCAATTTAAGCATAT
1 TGTATTCAATTTCACATCAATAGCATGTAAACAATTCATACATACAATATTCAATTTAAGCATAT
*
34412561 AAATAAACACGATTTAATTACACGAACTTACATCAATACTTGTTCGTATACGAAAATCTACTAAT
66 AAATAAACACAATTTAATTACACGAACTTACATCAATACTTGTTCGTATACGAAAATCTACTAAT
* * *
34412626 CAGAAACTTTTTGTTTTCCTCGATCCAATTTCGTATTTGCTCTTTTCGGATCTATATAAATGAAT
131 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGCTCTTTTCGAATCTATATAAATGAAT
34412691 TTAATCAT
196 TTAATCAT
34412699 CAATATATTA
Statistics
Matches: 193, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
213 193 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.38
Consensus pattern (213 bp):
TGTATTCAATTTCACATCAATAGCATGTAAACAATTCATACATACAATATTCAATTTAAGCATAT
AAATAAACACAATTTAATTACACGAACTTACATCAATACTTGTTCGTATACGAAAATCTACTAAT
CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGCTCTTTTCGAATCTATATAAATGAAT
TTAATCATGAATTTATCA
Found at i:34414961 original size:213 final size:213
Alignment explanation
Indices: 34414590--34415005 Score: 742
Period size: 213 Copynumber: 2.0 Consensus size: 213
34414580 TTATCGATCT
** * *
34414590 TGTATTCAATTTCACATCAATAGCATGTACCCAATTCATACATACAATATTCAATTTAAGCATAT
1 TGTATTCAATTTCACATCAATAGCATGTAAACAACTCATACATACAATATTCAACTTAAGCATAT
* *
34414655 AAATAAACACAATTTAGTTACATAAACTTACCTCAATACTTGTTCTTATACGAAAATCTACTAAT
66 AAATAAACACAATTTAGTTACACAAACTTACCTCAATACTTGTTCGTATACGAAAATCTACTAAT
34414720 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGGATCTATATAAATGAAT
131 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGGATCTATATAAATGAAT
34414785 TTAATCATGAATTTATCA
196 TTAATCATGAATTTATCA
*
34414803 TGTATTCAATTTCACATCAATAGCATTTAAACAACTCATACATACAATATTCAACTTAAGCATAT
1 TGTATTCAATTTCACATCAATAGCATGTAAACAACTCATACATACAATATTCAACTTAAGCATAT
* *
34414868 AAATAAACACGATTTAGTTACACGAACTTACCTCAATACTTGTTCGTATACGAAAATCTACTAAT
66 AAATAAACACAATTTAGTTACACAAACTTACCTCAATACTTGTTCGTATACGAAAATCTACTAAT
*
34414933 CAGAAACTTTTTGTTTTCCTCGATCCAATTCCGTATTTGGTCTTTTCGGATCTATATAAATGAAT
131 CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGGATCTATATAAATGAAT
34414998 TTAATCAT
196 TTAATCAT
34415006 CAATATATTA
Statistics
Matches: 193, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
213 193 1.00
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.37
Consensus pattern (213 bp):
TGTATTCAATTTCACATCAATAGCATGTAAACAACTCATACATACAATATTCAACTTAAGCATAT
AAATAAACACAATTTAGTTACACAAACTTACCTCAATACTTGTTCGTATACGAAAATCTACTAAT
CAGAAACTTTTTGTTTTCCTCAATCCAATTCCGTATTTGGTCTTTTCGGATCTATATAAATGAAT
TTAATCATGAATTTATCA
Found at i:34423904 original size:13 final size:13
Alignment explanation
Indices: 34423886--34423911 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34423876 TTTTTCGACC
34423886 CGGGTGTGGGGTA
1 CGGGTGTGGGGTA
34423899 CGGGTGTGGGGTA
1 CGGGTGTGGGGTA
34423912 TGCTAGACCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.62, T:0.23
Consensus pattern (13 bp):
CGGGTGTGGGGTA
Found at i:34425040 original size:25 final size:25
Alignment explanation
Indices: 34424957--34425074 Score: 119
Period size: 25 Copynumber: 4.6 Consensus size: 25
34424947 TGAACTCTAG
* *
34424957 CTCAAGGCCTGATAATTAAACACCGA
1 CTCAAAGCCTGCTAA-TAAACACCGA
* * *
34424983 CTCACAGCCTGCTAGATAAATCACTGG
1 CTCAAAGCCTGCTA-ATAAA-CACCGA
* * *
34425010 CTCAAAGTCTACTAATAAATACCGA
1 CTCAAAGCCTGCTAATAAACACCGA
*
34425035 CTCAAAGCCTGCTAATATACACCGA
1 CTCAAAGCCTGCTAATAAACACCGA
*
34425060 CTTAAAGCCTGCTAA
1 CTCAAAGCCTGCTAA
34425075 GCAATCACAT
Statistics
Matches: 74, Mismatches: 16, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
25 38 0.51
26 20 0.27
27 16 0.22
ACGTcount: A:0.36, C:0.28, G:0.14, T:0.22
Consensus pattern (25 bp):
CTCAAAGCCTGCTAATAAACACCGA
Found at i:34425911 original size:4 final size:4
Alignment explanation
Indices: 34425887--34425928 Score: 57
Period size: 4 Copynumber: 10.5 Consensus size: 4
34425877 CTAGCCTTTG
* **
34425887 TTTA TTTG TTTA TACA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
34425929 CACAAATTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:34431148 original size:28 final size:28
Alignment explanation
Indices: 34430913--34431309 Score: 327
Period size: 28 Copynumber: 14.1 Consensus size: 28
34430903 TTCTCCGTAA
* * **
34430913 CATAGACCGCCATAAAGGCTTCTATTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* * * *
34430941 -AGTAGATCACTATAAAGGCTTCTCTTTT
1 CA-TAGATCGCCACAAAGGCTTCCCTTTT
* *
34430969 CATAGATTGCCATAAAGGCTTCCCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* * * *
34430997 TATAGTTCACCACAAAGGTTTCCCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* * *
34431025 CATAGATAGTCTCAAAGGCTTCCCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* *
34431053 CATAGATCGACACAAAGGCTTCCCTCTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* * * *
34431081 -ATAGTTCCCCATAAAGGCTTCTCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* * *
34431108 CATATATCACTACAAAGGCTTCCCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* * *
34431136 CATAGATCGCTACAAACAAAGGATTTCTTTTT
1 CATAGATCGC--C--ACAAAGGCTTCCCTTTT
*
34431168 CACA-ATTCGCCACAAAGGCTT-CCTTTGT
1 CATAGA-TCGCCACAAAGGCTTCCCTTT-T
* *
34431196 CAGAAATCGCCACAAAGGCTTCCCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
** * *
34431224 TTTAGTTCGCCACAAAGGCTTCTCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
*
34431252 CATAGATCGCCACAAAGGCTT-CATTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
* * * *
34431279 TATAGTTTGCCACAAAAGCTTCCCTTTT
1 CATAGATCGCCACAAAGGCTTCCCTTTT
34431307 CAT
1 CAT
34431310 GCTTCTCTTT
Statistics
Matches: 293, Mismatches: 64, Indels: 24
0.77 0.17 0.06
Matches are distributed among these distances:
27 47 0.16
28 216 0.74
29 7 0.02
30 1 0.00
31 1 0.00
32 21 0.07
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.35
Consensus pattern (28 bp):
CATAGATCGCCACAAAGGCTTCCCTTTT
Found at i:34431350 original size:28 final size:28
Alignment explanation
Indices: 34431310--34431373 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
34431300 CCCTTTTCAT
* * *
34431310 GCTTCTCTTTTTATAGTTTGCCACAAAG
1 GCTTCCCTCTTTATAGTTCGCCACAAAG
34431338 GCTTCCCTCTTTATAGTTCGCCACAAAG
1 GCTTCCCTCTTTATAGTTCGCCACAAAG
34431366 GCTTCCCT
1 GCTTCCCT
34431374 TTTTCTAACG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.38
Consensus pattern (28 bp):
GCTTCCCTCTTTATAGTTCGCCACAAAG
Found at i:34436614 original size:10 final size:10
Alignment explanation
Indices: 34436601--34436629 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
34436591 AAAAAACTTA
34436601 AAAATATTTC
1 AAAATATTTC
34436611 AAAATATTTC
1 AAAATATTTC
34436621 AAAATATTT
1 AAAATATTT
34436630 TTCGTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (10 bp):
AAAATATTTC
Found at i:34437827 original size:54 final size:54
Alignment explanation
Indices: 34437756--34437866 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 54
34437746 ATTCCAAAAG
34437756 TATATGGCAGCAATTACACAATTTCTATTAACCAATTTTACTTGTTTCTATCAA
1 TATATGGCAGCAATTACACAATTTCTATTAACCAATTTTACTTGTTTCTATCAA
*
34437810 TATATGGCAGCATTTACACAATTTCTATTAACCAATTTTACTTGTTTCTATCAA
1 TATATGGCAGCAATTACACAATTTCTATTAACCAATTTTACTTGTTTCTATCAA
34437864 TAT
1 TAT
34437867 CAAATTAAGT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.32, C:0.18, G:0.07, T:0.42
Consensus pattern (54 bp):
TATATGGCAGCAATTACACAATTTCTATTAACCAATTTTACTTGTTTCTATCAA
Found at i:34448438 original size:13 final size:13
Alignment explanation
Indices: 34448420--34448445 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34448410 AATATTGCAT
34448420 GAAAATTTTTATC
1 GAAAATTTTTATC
34448433 GAAAATTTTTATC
1 GAAAATTTTTATC
34448446 AATTATGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
GAAAATTTTTATC
Found at i:34448921 original size:20 final size:21
Alignment explanation
Indices: 34448896--34448937 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
34448886 AATATGCTGT
*
34448896 AAAATGAAAG-TTTTTGATAG
1 AAAATGAAAGATTATTGATAG
34448916 AAAATGAAAGATTATTGATAG
1 AAAATGAAAGATTATTGATAG
34448937 A
1 A
34448938 TAAACCACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (21 bp):
AAAATGAAAGATTATTGATAG
Found at i:34449461 original size:32 final size:32
Alignment explanation
Indices: 34449419--34449527 Score: 121
Period size: 32 Copynumber: 3.3 Consensus size: 32
34449409 AAATGATACA
*
34449419 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
1 ACTTGAAAAGGTTAGGTATACTTTGTGTGTAC
* *
34449451 ACTTGGAAAGGTTAGGTATACTTTGTGTATAC
1 ACTTGAAAAGGTTAGGTATACTTTGTGTGTAC
** *
34449483 -CATATGAAAAGGAAAGGTATACTTTGTGAGTACC
1 AC-T-TGAAAAGGTTAGGTATACTTTGTGTGTA-C
*
34449517 ACTTGGAAAGG
1 ACTTGAAAAGG
34449528 AATGTACGCC
Statistics
Matches: 64, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
31 1 0.02
32 30 0.47
33 30 0.47
34 2 0.03
35 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (32 bp):
ACTTGAAAAGGTTAGGTATACTTTGTGTGTAC
Found at i:34449527 original size:33 final size:33
Alignment explanation
Indices: 34449432--34449529 Score: 112
Period size: 33 Copynumber: 3.0 Consensus size: 33
34449422 TGAAAAGGTT
* * **
34449432 AGGTACACTTTGTGTGTA-CACTTGGAAAGGTT
1 AGGTATACTTTGTGAGTACCACTTGGAAAGGAA
*
34449464 AGGTATACTTTGTGTA-TACCA-TATGAAAAGGAA
1 AGGTATACTTTGTG-AGTACCACT-TGGAAAGGAA
34449497 AGGTATACTTTGTGAGTACCACTTGGAAAGGAA
1 AGGTATACTTTGTGAGTACCACTTGGAAAGGAA
34449530 TGTACGCCTC
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
32 17 0.31
33 37 0.67
34 1 0.02
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.31
Consensus pattern (33 bp):
AGGTATACTTTGTGAGTACCACTTGGAAAGGAA
Found at i:34452907 original size:40 final size:39
Alignment explanation
Indices: 34452849--34453067 Score: 258
Period size: 40 Copynumber: 5.5 Consensus size: 39
34452839 CGGATGATAA
* * *
34452849 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
34452889 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
* * *
34452929 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TT
** *
34452969 CCGGGCTAAGTCCTAAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
* *
34453009 CCGGGCTAAGTCTCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-T
*
34453049 CCGGGCTATGTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
34453068 TACTTGGCTT
Statistics
Matches: 156, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
40 156 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATT
Found at i:34453062 original size:120 final size:120
Alignment explanation
Indices: 34452849--34453067 Score: 316
Period size: 120 Copynumber: 1.8 Consensus size: 120
34452839 CGGATGATAA
* * *
34452849 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCAAAGGCATTTGCGCGAGTGACTAGTTCCAGGCTAAGTCCCGAAGGCATTGG
*
34452914 TGCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTACAT
66 TGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTACAT
* * * *
34452969 CCGGGCTAAGTCCTAAAGGCATTTGTGCGAGCT-ACTA-TATCCGGGCTAAGTCTCGAAGGCATT
1 CCGGGCTAAGTCCCAAAGGCATTTGCGCGAG-TGACTAGT-TCCAGGCTAAGTCCCGAAGGCATT
* *
34453032 GGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGG
64 GGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGG
34453068 TACTTGGCTT
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
119 1 0.01
120 85 0.98
121 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (120 bp):
CCGGGCTAAGTCCCAAAGGCATTTGCGCGAGTGACTAGTTCCAGGCTAAGTCCCGAAGGCATTGG
TGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTACAT
Found at i:34458270 original size:32 final size:32
Alignment explanation
Indices: 34458228--34458352 Score: 162
Period size: 32 Copynumber: 3.9 Consensus size: 32
34458218 AAGTGATACA
34458228 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
1 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
* * *
34458260 ACTTGGAAAGGTTAGGTATACTTTGTGTATAC
1 ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
**
34458292 -CATATGAAAAGGAAAGGTACACTTTGTGTGTAC
1 AC-T-TGAAAAGGTTAGGTACACTTTGTGTGTAC
* *
34458325 ACTTGGAAAGGTTAGGTATACTTTGTGT
1 ACTTGAAAAGGTTAGGTACACTTTGTGT
34458353 ATACCATATG
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
31 1 0.01
32 51 0.65
33 25 0.32
34 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (32 bp):
ACTTGAAAAGGTTAGGTACACTTTGTGTGTAC
Found at i:34458270 original size:65 final size:64
Alignment explanation
Indices: 34458195--34458398 Score: 207
Period size: 65 Copynumber: 3.1 Consensus size: 64
34458185 AAAGGGTAAA
**
34458195 ACTTGGAAAGGACTTA-TATACCCAAGTG-ATACAACT-TGAAAAGGTTAGGTACACTTTGTGTG
1 ACTTGGAAAGG--TTAGTATA-CCAAGTGTATACAA-TATGAAAAGGAAAGGTACACTTTGTGTG
34458257 TAC
62 TAC
*** *
34458260 ACTTGGAAAGGTTAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTACACTTTGTGTGTAC
1 ACTTGGAAAGGTTA-GTATACCAAGTGTATACAATATGAAAAGGAAAGGTACACTTTGTGTGTAC
*** * * * *
34458325 ACTTGGAAAGGTTAGGTATACTTTGTGTATACCATATGAAAATGAAAGGTATACTTTGTGAGTAC
1 ACTTGGAAAGGTTA-GTATACCAAGTGTATACAATATGAAAAGGAAAGGTACACTTTGTGTGTA-
34458390 C
64 C
34458391 ACTTGGAA
1 ACTTGGAA
34458399 TGAAATGTAC
Statistics
Matches: 125, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
63 3 0.02
64 5 0.04
65 108 0.86
66 9 0.07
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.31
Consensus pattern (64 bp):
ACTTGGAAAGGTTAGTATACCAAGTGTATACAATATGAAAAGGAAAGGTACACTTTGTGTGTAC
Found at i:34458391 original size:33 final size:33
Alignment explanation
Indices: 34458273--34458384 Score: 147
Period size: 33 Copynumber: 3.4 Consensus size: 33
34458263 TGGAAAGGTT
34458273 AGGTATACTTTGTGTATACCATATGAAAAGGAA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
* * * **
34458306 AGGTACACTTTGTGTGTA-CACT-TGGAAAGGTT
1 AGGTATACTTTGTGTATACCA-TATGAAAAGGAA
*
34458338 AGGTATACTTTGTGTATACCATATGAAAATGAA
1 AGGTATACTTTGTGTATACCATATGAAAAGGAA
34458371 AGGTATACTTTGTG
1 AGGTATACTTTGTG
34458385 AGTACCACTT
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
32 26 0.40
33 39 0.60
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34
Consensus pattern (33 bp):
AGGTATACTTTGTGTATACCATATGAAAAGGAA
Found at i:34461191 original size:21 final size:21
Alignment explanation
Indices: 34461155--34461207 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
34461145 TACATTTATG
*
34461155 GGCATTAAAATAAGCCTACGA
1 GGCATTAAAACAAGCCTACGA
* * *
34461176 GGTATTAAAACGAGCCTATGA
1 GGCATTAAAACAAGCCTACGA
*
34461197 GGCCTTAAAAC
1 GGCATTAAAAC
34461208 TAGTTTAGGA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.19, G:0.21, T:0.21
Consensus pattern (21 bp):
GGCATTAAAACAAGCCTACGA
Found at i:34462086 original size:38 final size:36
Alignment explanation
Indices: 34462044--34462147 Score: 86
Period size: 38 Copynumber: 2.8 Consensus size: 36
34462034 ATGAATCGTT
*
34462044 ACACCAATACGAAGCCTGCTAGGCATCAAGCCCGATAA
1 ACACCAATA-GAAGCCTGCTAGGC-TCAAGACCGATAA
* * *
34462082 ACACCTACA-ATAAGCCTACTAGGCTTCAAGATCGATAA
1 ACACC-A-ATAGAAGCCTGCTAGGC-TCAAGACCGATAA
*
34462120 ACATCGGAAT-GAAGCCTGCTAGGCTCAA
1 ACA-C-CAATAGAAGCCTGCTAGGCTCAA
34462148 AGTCTAATAA
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
37 4 0.08
38 44 0.83
39 4 0.08
40 1 0.02
ACGTcount: A:0.37, C:0.28, G:0.18, T:0.17
Consensus pattern (36 bp):
ACACCAATAGAAGCCTGCTAGGCTCAAGACCGATAA
Found at i:34462194 original size:39 final size:39
Alignment explanation
Indices: 34462131--34462240 Score: 166
Period size: 39 Copynumber: 2.8 Consensus size: 39
34462121 CATCGGAATG
* * *
34462131 AAGCCTGCTAGGCTCAAAGTCTAATAAGTCTCCGGCACA
1 AAGCCTGTTAGGCTCAAAGCCTAATAAGTCACCGGCACA
* *
34462170 AAGCTTGTTAGGCTCAAAGCCTAATAAGTCACCGGCACG
1 AAGCCTGTTAGGCTCAAAGCCTAATAAGTCACCGGCACA
*
34462209 AAGCCTGTTAGGCTCAAAGCCTGATAAGTCAC
1 AAGCCTGTTAGGCTCAAAGCCTAATAAGTCAC
34462241 TGAACAAGGC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (39 bp):
AAGCCTGTTAGGCTCAAAGCCTAATAAGTCACCGGCACA
Found at i:34462262 original size:38 final size:39
Alignment explanation
Indices: 34462124--34462263 Score: 131
Period size: 39 Copynumber: 3.6 Consensus size: 39
34462114 CGATAAACAT
* * * *
34462124 CGGAATGAAGCCTGCTAGGCTCAAAGTCTAATAAGTCTC
1 CGGAACGAAGCCTGCCAGGCTCAAAGCCTAATAAGTCAC
* * * **
34462163 CGGCACAAAGCTTGTTAGGCTCAAAGCCTAATAAGTCAC
1 CGGAACGAAGCCTGCCAGGCTCAAAGCCTAATAAGTCAC
* ** *
34462202 CGGCACGAAGCCTGTTAGGCTCAAAGCCTGATAAGTCA-
1 CGGAACGAAGCCTGCCAGGCTCAAAGCCTAATAAGTCAC
*
34462240 CTGAAC-AAGGCCTGCCAGGCTCAA
1 CGGAACGAA-GCCTGCCAGGCTCAA
34462264 GCTCCGATAT
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
37 2 0.02
38 17 0.20
39 67 0.78
ACGTcount: A:0.31, C:0.26, G:0.24, T:0.19
Consensus pattern (39 bp):
CGGAACGAAGCCTGCCAGGCTCAAAGCCTAATAAGTCAC
Found at i:34464611 original size:20 final size:21
Alignment explanation
Indices: 34464572--34464611 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
34464562 AAGGGCTATT
*
34464572 TTGTAAAGTTTGTAAAATAAG
1 TTGTAAAGTGTGTAAAATAAG
*
34464593 TTGTAAA-TGTGTGAAATAA
1 TTGTAAAGTGTGTAAAATAA
34464612 TTGAAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (21 bp):
TTGTAAAGTGTGTAAAATAAG
Found at i:34464978 original size:17 final size:17
Alignment explanation
Indices: 34464956--34464989 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
34464946 TATTCTTTAC
34464956 TATGATTTAATATATTG
1 TATGATTTAATATATTG
34464973 TATGATTTAATATATTG
1 TATGATTTAATATATTG
34464990 GAAAAATTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (17 bp):
TATGATTTAATATATTG
Found at i:34467123 original size:79 final size:78
Alignment explanation
Indices: 34467021--34467245 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 78
34467011 GCTCTTCGTT
* *
34467021 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
34467086 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* *
34467101 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
34467164 GATTTAGTATCTCGCA
63 GATTTAGTAACTCGCA
* * * * *
34467180 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
34467244 GA
63 GA
34467246 CATCATTCAA
Statistics
Matches: 125, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
78 6 0.05
79 64 0.51
80 42 0.34
81 12 0.10
82 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCGCA
Found at i:34467205 original size:119 final size:120
Alignment explanation
Indices: 34467021--34467245 Score: 291
Period size: 119 Copynumber: 1.9 Consensus size: 120
34467011 GCTCTTCGTT
34467021 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
34467086 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
34467140 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAAC
* *
34467201 CCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
62 CCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
34467246 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
118 8 0.09
119 63 0.68
120 21 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:34467245 original size:40 final size:39
Alignment explanation
Indices: 34467002--34467245 Score: 246
Period size: 40 Copynumber: 6.1 Consensus size: 39
34466992 CGGAATTTAA
* ** *
34467002 CCGGATATAGCTCTTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TATTCGCACAAATGCCTTCGGGACTTAGC
* *
34467042 CCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGT-ATTCGCACAAATGCCTTCGGGACTTAGC
* *
34467082 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGT-ATTCGCACAAATGCCTTCGGGACTTAGC
*
34467121 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAT-TCGCACAAATGCCTTCGGGA-CTTAGC
* *
34467161 CCGGATTTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAT-TCGCACAAATGCCTTCGGGA-CTTAGC
* *
34467201 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-A-TTCGCACAAATGCCTTCGGGACTTAGC
34467241 CCGGA
1 CCGGA
34467246 CATCATTCAA
Statistics
Matches: 177, Mismatches: 18, Indels: 18
0.83 0.08 0.08
Matches are distributed among these distances:
38 3 0.02
39 31 0.18
40 130 0.73
41 12 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAGTATTCGCACAAATGCCTTCGGGACTTAGC
Found at i:34471339 original size:58 final size:58
Alignment explanation
Indices: 34471187--34471341 Score: 156
Period size: 57 Copynumber: 2.7 Consensus size: 58
34471177 CCACATATCA
* * * *
34471187 TATAACAGGATTACTTGTCCAAGCTAAATCCTGTTTC--CAACATATGCTCATAAGAGCT
1 TATATCAGGATTACTAGTCCAGGCTAAAT-CT-TTTCTATAACATATGCTCATAAGAGCT
* ** * * * *
34471245 TA-ATCAGGACTACCCGTCCGGGCTAAATCCTGTCTATAACATATGCTCA-AGAGGGCT
1 TATATCAGGATTACTAGTCCAGGCTAAATCTTTTCTATAACATATGCTCATA-AGAGCT
34471302 TATATCAGGATTACTAGTCCAGGCTAAATCTTTTCTATAA
1 TATATCAGGATTACTAGTCCAGGCTAAATCTTTTCTATAA
34471342 TGAGGTCAAT
Statistics
Matches: 77, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
55 3 0.04
56 2 0.03
57 39 0.51
58 33 0.43
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (58 bp):
TATATCAGGATTACTAGTCCAGGCTAAATCTTTTCTATAACATATGCTCATAAGAGCT
Found at i:34481425 original size:18 final size:19
Alignment explanation
Indices: 34481402--34481438 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
34481392 AATTTAGCTT
34481402 TTAAACTC-TAAATGAAAA
1 TTAAACTCTTAAATGAAAA
*
34481420 TTAAACTCTTAAATTAAAA
1 TTAAACTCTTAAATGAAAA
34481439 ATTTTTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.54, C:0.11, G:0.03, T:0.32
Consensus pattern (19 bp):
TTAAACTCTTAAATGAAAA
Found at i:34482322 original size:28 final size:28
Alignment explanation
Indices: 34482290--34482344 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
34482280 TTATTTTGAC
*
34482290 TTTTTAAAATTTAGTTAAATATTTTAAAA
1 TTTTCAAAATTT-GTTAAATATTTTAAAA
* * *
34482319 TTTTCTAAATTTTTTTAATATTTTAA
1 TTTTCAAAATTTGTTAAATATTTTAA
34482345 TATATTATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 12 0.55
29 10 0.45
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (28 bp):
TTTTCAAAATTTGTTAAATATTTTAAAA
Found at i:34482336 original size:20 final size:18
Alignment explanation
Indices: 34482290--34482333 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
34482280 TTATTTTGAC
34482290 TTTTTAAAATTTAGTTAAAT
1 TTTTTAAAATTT--TTAAAT
*
34482310 ATTTTAAAATTTTCTAAAT
1 TTTTTAAAATTTT-TAAAT
34482329 TTTTT
1 TTTTT
34482334 TAATATTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 9 0.43
20 11 0.52
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59
Consensus pattern (18 bp):
TTTTTAAAATTTTTAAAT
Found at i:34483295 original size:4 final size:4
Alignment explanation
Indices: 34483286--34483310 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
34483276 GAAGCATGGT
34483286 CCAC CCAC CCAC CCAC CCAC CCAC C
1 CCAC CCAC CCAC CCAC CCAC CCAC C
34483311 TTAAAAGGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.76, G:0.00, T:0.00
Consensus pattern (4 bp):
CCAC
Found at i:34489436 original size:13 final size:13
Alignment explanation
Indices: 34489420--34489446 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
34489410 TATGTATTAG
34489420 TTTATTTTATTTA
1 TTTATTTTATTTA
34489433 TTTATTTTATTTA
1 TTTATTTTATTTA
34489446 T
1 T
34489447 AACAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:34498244 original size:41 final size:40
Alignment explanation
Indices: 34498092--34498261 Score: 152
Period size: 41 Copynumber: 4.2 Consensus size: 40
34498082 GCTAATTGGG
* *
34498092 GTCTAAATCCGAGCTTGGTCTTGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
34498133 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* *
34498176 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAGT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
34498216 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
34498257 G-CTAA
1 GTCTAA
34498262 GAGTCGGACT
Statistics
Matches: 106, Mismatches: 11, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
39 7 0.07
40 14 0.13
41 49 0.46
42 23 0.22
43 9 0.08
44 1 0.01
45 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:34505673 original size:14 final size:14
Alignment explanation
Indices: 34505654--34505682 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
34505644 GAGATAATGG
34505654 ACATGATTTAGTAA
1 ACATGATTTAGTAA
34505668 ACATGATTTAGTAA
1 ACATGATTTAGTAA
34505682 A
1 A
34505683 GTATGCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (14 bp):
ACATGATTTAGTAA
Found at i:34506200 original size:10 final size:10
Alignment explanation
Indices: 34506185--34506211 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
34506175 ATTAGATAAA
34506185 ATGTTATTAT
1 ATGTTATTAT
34506195 ATGTTATTAT
1 ATGTTATTAT
34506205 ATGTTAT
1 ATGTTAT
34506212 AATTTATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (10 bp):
ATGTTATTAT
Found at i:34517257 original size:26 final size:28
Alignment explanation
Indices: 34517203--34517257 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
34517193 TATTAACCAA
* * *
34517203 GCACTATGTGTGCGAGATCGGTTGTAGG
1 GCACTATGTGTGCGAAATCGATTGAAGG
34517231 GCACTATGTGTGCGAAAT-GATT-AAGG
1 GCACTATGTGTGCGAAATCGATTGAAGG
34517257 G
1 G
34517258 AATATGATCG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.17
27 3 0.12
28 17 0.71
ACGTcount: A:0.24, C:0.13, G:0.36, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAAATCGATTGAAGG
Found at i:34521153 original size:40 final size:40
Alignment explanation
Indices: 34521098--34521315 Score: 332
Period size: 40 Copynumber: 5.5 Consensus size: 40
34521088 TGGATGATAA
**
34521098 CCGGGCTAAGTCCCGAAGGCATTTGCACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
34521138 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
34521178 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
34521218 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
34521258 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
34521298 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
34521316 TACTTGGCTT
Statistics
Matches: 166, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 15 0.09
40 151 0.91
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:34526254 original size:37 final size:37
Alignment explanation
Indices: 34526204--34526313 Score: 166
Period size: 37 Copynumber: 3.0 Consensus size: 37
34526194 AGACCTTTAG
* * *
34526204 CTCAGACGAAATCTCCACACGAAGTTATCGGGTCTTA
1 CTCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
34526241 CTCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
1 CTCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
* * *
34526278 CCCGGACATAATCTCCACACGTAGTCATCGGGTCTT
1 CTCAGACAAAATCTCCACACGTAGTCATCGGGTCTT
34526314 TAGAGCTCGG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
CTCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
Found at i:34526510 original size:47 final size:47
Alignment explanation
Indices: 34526432--34526693 Score: 434
Period size: 47 Copynumber: 5.6 Consensus size: 47
34526422 TCCTTCGGGA
* * * * * *
34526432 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34526479 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34526526 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34526573 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34526620 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34526667 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
34526694 TATTCAAATA
Statistics
Matches: 201, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 201 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34528612 original size:13 final size:13
Alignment explanation
Indices: 34528594--34528618 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34528584 TACTAAATTT
34528594 TCATGGATTCAAA
1 TCATGGATTCAAA
34528607 TCATGGATTCAA
1 TCATGGATTCAA
34528619 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:34531495 original size:37 final size:37
Alignment explanation
Indices: 34531445--34531553 Score: 157
Period size: 37 Copynumber: 3.0 Consensus size: 37
34531435 AGACCTTTAG
* * *
34531445 CTCAGACGAAATCTCCACACGAAGTTATCGGGTCTTA
1 CTCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
34531482 CTCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
1 CTCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
* * *
34531519 CCCGGA-ATAATCTCCACACGTAGTCATCGGGTCTT
1 CTCAGACAAAATCTCCACACGTAGTCATCGGGTCTT
34531554 TAGAGCTCGG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
36 28 0.42
37 38 0.58
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (37 bp):
CTCAGACAAAATCTCCACACGTAGTCATCGGGTCTTA
Found at i:34531783 original size:47 final size:47
Alignment explanation
Indices: 34531670--34531926 Score: 391
Period size: 47 Copynumber: 5.6 Consensus size: 47
34531660 TCCTTCGGGA
* * * * *
34531670 CTTATCACATTTATACACTTTCACATCCATCACGT-GGCCACT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34531715 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34531761 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34531808 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34531854 CTTATCAACATATATACGCTTTCACA-TCATCACATCGGCCATTAGGC
1 CTTATC-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34531901 CTTATCA-ATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
34531927 TATTCAAATA
Statistics
Matches: 195, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
44 29 0.15
45 23 0.12
46 31 0.16
47 112 0.57
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34539673 original size:40 final size:40
Alignment explanation
Indices: 34539576--34539726 Score: 234
Period size: 40 Copynumber: 3.8 Consensus size: 40
34539566 CGGATGATAA
*
34539576 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
34539616 CC-GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
34539655 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
* *
34539695 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
34539727 AGCTATATCC
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
39 37 0.36
40 63 0.62
41 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:34539752 original size:79 final size:79
Alignment explanation
Indices: 34539576--34539726 Score: 223
Period size: 79 Copynumber: 1.9 Consensus size: 79
34539566 CGGATGATAA
* * * *
34539576 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGCTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAATCCCGAAGGCATTGGTGCGAGTTACTAATACCGGCTAAGTCCCGAAGGCATTTGA
34539641 GCGAGTTACCAAAT
66 GCGAGTTACCAAAT
* *
34539655 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTT
1 CCGGGCTAAATCCCGAAGGCATTGGTGCGAGTTACTAAT-ACC-GGCTAAGTCCCGAAGGCATTT
34539719 GAGCGAGT
64 GAGCGAGT
34539727 AGCTATATCC
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
78 2 0.03
79 37 0.56
80 27 0.41
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAATCCCGAAGGCATTGGTGCGAGTTACTAATACCGGCTAAGTCCCGAAGGCATTTGA
GCGAGTTACCAAAT
Found at i:34543207 original size:40 final size:40
Alignment explanation
Indices: 34543163--34543351 Score: 265
Period size: 40 Copynumber: 4.8 Consensus size: 40
34543153 GGGGTGTTAC
34543163 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
1 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
34543203 AGTTACTATATCCGGGCTAAGTCCCGAATGCATTTGTGCG
1 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
**
34543243 AGTTACTATATCCGGGCTAAGTTTCGAAGGCATTTGTGCG
1 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
* * ***
34543283 AGTTACTATATCCGGGCTATGTCCCGAAGGTATTCAAGCG
1 AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
* *
34543323 AG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 AGTTA-CTATATCCGGGCTAAGTCCCGAAGG
34543352 TACTTGGCTT
Statistics
Matches: 134, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 15 0.11
40 119 0.89
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (40 bp):
AGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG
Found at i:34546922 original size:68 final size:66
Alignment explanation
Indices: 34546850--34546998 Score: 176
Period size: 66 Copynumber: 2.2 Consensus size: 66
34546840 CATCATGTGT
* * * *
34546850 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
34546913 TGTAG
62 TGTAG
** * *
34546918 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTA
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
34546983 G
66 G
34546984 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
34546999 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.34
65 5 0.07
66 28 0.40
68 13 0.19
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.21
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:34546955 original size:64 final size:64
Alignment explanation
Indices: 34546874--34547056 Score: 210
Period size: 66 Copynumber: 2.8 Consensus size: 64
34546864 AGACATTATG
* * *
34546874 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
34546938 ATGTAGCTAGGTCGCATGCGTGGTTCCAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGATA
34547003 A
64 A
* * *
34547004 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
34547057 CGAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
65 21 0.21
66 31 0.31
67 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:34550648 original size:27 final size:27
Alignment explanation
Indices: 34550618--34550795 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
34550608 ATATTGAGCC
* * *
34550618 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
34550645 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
34550672 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
34550700 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
34550727 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
34550754 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
34550781 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34550796 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:34550711 original size:55 final size:55
Alignment explanation
Indices: 34550618--34550795 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
34550608 ATATTGAGCC
* * *
34550618 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
34550672 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
34550727 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
34550781 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34550796 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Done.