Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 108 of 325
Found at i:34855090 original size:20 final size:18
Alignment explanation
Indices: 34855008--34855117 Score: 57
Period size: 19 Copynumber: 5.9 Consensus size: 18
34854998 TTCCAAAAAT
* *
34855008 AATATTATTTTAATAGTTT
1 AATATTAATTTAATA-TTA
*
34855027 AATATTAAATTT-A-ATTG
1 AATATT-AATTTAATATTA
* *
34855044 AATACTTATTTTAATAATA
1 AATA-TTAATTTAATATTA
**
34855063 TTTTATTAATTTAATATTA
1 -AATATTAATTTAATATTA
*
34855082 AAGTGATT-ATCTTATTATTA
1 AA-T-ATTAAT-TTAATATTA
34855102 AAT-TTAATTTAATATT
1 AATATTAATTTAATATT
34855118 TATCTTGTAA
Statistics
Matches: 69, Mismatches: 13, Indels: 20
0.68 0.13 0.20
Matches are distributed among these distances:
17 19 0.28
18 6 0.09
19 25 0.36
20 19 0.28
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (18 bp):
AATATTAATTTAATATTA
Found at i:34855262 original size:130 final size:127
Alignment explanation
Indices: 34855010--34855238 Score: 290
Period size: 130 Copynumber: 1.8 Consensus size: 127
34855000 CCAAAAATAA
* *
34855010 TATTATTTTAATAGTTTAATATTAAATTTAATTGAATACTTATTTTAATAATATTTTATTAATTT
1 TATTATTTTAATAGTTTAATATTAAATTTAATTGAATACTTATCTTAATAATATTATATTAATTT
* * * * **
34855075 AATATTAAAGTGATTATCTTATTATTAAATTTAATTTAATATTTATCTTGTAAATAAATATTC
66 AATATTAAAGTGA-TATCTAAGTATTAAATATAATTGAATATTTATCTCCTAAATAAATATTC
*
34855138 TATTATTTTAATAAGATTTAATATTAAATTTAATCT-AATATTTATCTTAATAAATATTATATTA
1 TATTATTTTAAT-AG-TTTAATATTAAATTTAAT-TGAATACTTATCTTAAT-AATATTATATTA
34855202 ATTTAATATTAAAGT-A-AT-TAAGT-TT-AATATAATTGAA
62 ATTTAATATTAAAGTGATATCTAAGTATTAAATATAATTGAA
34855239 CTCTTTCAAC
Statistics
Matches: 90, Mismatches: 7, Indels: 11
0.83 0.06 0.10
Matches are distributed among these distances:
125 10 0.11
126 2 0.02
127 3 0.03
128 14 0.16
129 2 0.02
130 32 0.36
131 27 0.30
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (127 bp):
TATTATTTTAATAGTTTAATATTAAATTTAATTGAATACTTATCTTAATAATATTATATTAATTT
AATATTAAAGTGATATCTAAGTATTAAATATAATTGAATATTTATCTCCTAAATAAATATTC
Found at i:34863663 original size:27 final size:27
Alignment explanation
Indices: 34863632--34863809 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34863622 TAAATTGTAC
34863632 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
34863659 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34863685 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
34863713 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34863741 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34863768 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34863795 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34863810 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34863746 original size:82 final size:81
Alignment explanation
Indices: 34863633--34863788 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34863623 AAATTGTACA
* *
34863633 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
34863697 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
34863714 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34863779 TGCGAGTTGA
65 TGCGAATTGA
34863789 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34863800 original size:82 final size:81
Alignment explanation
Indices: 34863629--34863809 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
34863619 GATTAAATTG
* *
34863629 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34863694 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
34863710 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34863774 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
34863792 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34863810 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34871837 original size:27 final size:27
Alignment explanation
Indices: 34871806--34871983 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34871796 TAAATTGTAC
34871806 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
34871833 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34871859 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
34871887 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34871915 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34871942 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34871969 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34871984 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34871920 original size:82 final size:81
Alignment explanation
Indices: 34871807--34871962 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34871797 AAATTGTACA
* *
34871807 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
34871871 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
34871888 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34871953 TGCGAGTTGA
65 TGCGAATTGA
34871963 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34871974 original size:82 final size:81
Alignment explanation
Indices: 34871803--34871983 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
34871793 GATTAAATTG
* *
34871803 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34871868 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
34871884 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34871948 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
34871966 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34871984 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34874295 original size:20 final size:20
Alignment explanation
Indices: 34874249--34874295 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
34874239 AGCTCGTTTC
*
34874249 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
34874269 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
34874289 CAGCTCA
1 CAGCTCA
34874296 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:34876829 original size:23 final size:22
Alignment explanation
Indices: 34876777--34876829 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
34876767 TCCACGTCTT
*
34876777 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
34876799 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
34876822 TTTCTTTT
1 TTTCTTTT
34876830 TTCACTCTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:34879361 original size:27 final size:27
Alignment explanation
Indices: 34879330--34879506 Score: 203
Period size: 27 Copynumber: 6.6 Consensus size: 27
34879320 TAAATTGTAC
*
34879330 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
34879357 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
34879383 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
34879411 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
34879438 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
34879465 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
34879492 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34879507 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:34879391 original size:54 final size:55
Alignment explanation
Indices: 34879330--34879506 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 55
34879320 TAAATTGTAC
* **
34879330 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
34879385 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * *
34879438 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
34879492 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34879507 GACTCAATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
53 1 0.01
54 104 0.99
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:34879470 original size:81 final size:81
Alignment explanation
Indices: 34879331--34879485 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
34879321 AAATTGTACA
* * *
34879331 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
34879396 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
34879412 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTG
*
34879476 TGCGAGTTGA
65 TGCGAATTGA
34879486 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 1 0.02
81 65 0.98
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34879497 original size:81 final size:81
Alignment explanation
Indices: 34879327--34879506 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 81
34879317 GATTAAATTG
* * *
34879327 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34879392 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
34879408 TGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
* **
34879472 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
34879489 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34879507 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 82 0.99
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34884091 original size:13 final size:13
Alignment explanation
Indices: 34884073--34884100 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34884063 AATATAGGGG
34884073 AAAATGTACCATT
1 AAAATGTACCATT
34884086 AAAATGTACCATT
1 AAAATGTACCATT
34884099 AA
1 AA
34884101 CGAATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (13 bp):
AAAATGTACCATT
Found at i:34886388 original size:16 final size:16
Alignment explanation
Indices: 34886369--34886415 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
34886359 TTGAACCAGG
*
34886369 CCGTGCATGAATCTTC
1 CCGTTCATGAATCTTC
34886385 CCGTTCATTGAA-CTTTC
1 CCGTTCA-TGAATC-TTC
*
34886402 CCGTTCATGCATCT
1 CCGTTCATGAATCT
34886416 CTTCATGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 11 0.42
17 15 0.58
ACGTcount: A:0.17, C:0.32, G:0.15, T:0.36
Consensus pattern (16 bp):
CCGTTCATGAATCTTC
Found at i:34886765 original size:20 final size:19
Alignment explanation
Indices: 34886713--34886766 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
34886703 GCTGAAAGTA
34886713 AGCTCGGTTGAGCTCAAACG
1 AGCT-GGTTGAGCTCAAACG
** *
34886733 AGCTGGAACGAGCTCAAATG
1 AGCTGG-TTGAGCTCAAACG
34886753 AGCTGAGTTGAGCT
1 AGCTG-GTTGAGCT
34886767 GGACAGAGCT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
19 2 0.07
20 24 0.89
21 1 0.04
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.20
Consensus pattern (19 bp):
AGCTGGTTGAGCTCAAACG
Found at i:34886795 original size:20 final size:20
Alignment explanation
Indices: 34886748--34886796 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
34886738 GAACGAGCTC
34886748 AAATGAGCTGAGTTGAGCTGG
1 AAATGAGCTGAG-TGAGCTGG
*
34886769 ACA-GAGCTCGAG-GAGCTGG
1 AAATGAGCT-GAGTGAGCTGG
34886788 AAATGAGCT
1 AAATGAGCT
34886797 AGGATCAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 9 0.38
20 10 0.42
21 5 0.21
ACGTcount: A:0.31, C:0.14, G:0.37, T:0.18
Consensus pattern (20 bp):
AAATGAGCTGAGTGAGCTGG
Found at i:34888432 original size:18 final size:18
Alignment explanation
Indices: 34888411--34888460 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
34888401 AAACTCTTTT
34888411 TCATTCTCTTTTTCAATC
1 TCATTCTCTTTTTCAATC
* *
34888429 TCATTTTCTTTTTCACTC
1 TCATTCTCTTTTTCAATC
*
34888447 TCAATCTCTTTTTC
1 TCATTCTCTTTTTC
34888461 TTTTTCTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.14, C:0.28, G:0.00, T:0.58
Consensus pattern (18 bp):
TCATTCTCTTTTTCAATC
Found at i:34888450 original size:24 final size:24
Alignment explanation
Indices: 34888386--34888467 Score: 101
Period size: 24 Copynumber: 3.4 Consensus size: 24
34888376 CTTGTTCACA
*
34888386 TTCTTTTTCTCTCTCAAACTCTTT
1 TTCTTTTTCTCTCTCAATCTCTTT
* * * * *
34888410 TTCATTCTCTTTTTCAATCTCATT
1 TTCTTTTTCTCTCTCAATCTCTTT
*
34888434 TTCTTTTTCACTCTCAATCTCTTT
1 TTCTTTTTCTCTCTCAATCTCTTT
34888458 TTCTTTTTCT
1 TTCTTTTTCT
34888468 TTCATTTCTT
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.12, C:0.27, G:0.00, T:0.61
Consensus pattern (24 bp):
TTCTTTTTCTCTCTCAATCTCTTT
Found at i:34892745 original size:20 final size:20
Alignment explanation
Indices: 34892693--34892746 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
34892683 GCTGAAAGTA
*
34892693 AGCTCGGTTGAGCTCAAACG
1 AGCTCAGTTGAGCTCAAACG
** *
34892713 AGCT-AGAACGAGCTCAAAGG
1 AGCTCAG-TTGAGCTCAAACG
34892733 AGCTCAGTTGAGCT
1 AGCTCAGTTGAGCT
34892747 GGACGGAGCT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
19 1 0.04
20 23 0.88
21 2 0.08
ACGTcount: A:0.30, C:0.22, G:0.30, T:0.19
Consensus pattern (20 bp):
AGCTCAGTTGAGCTCAAACG
Found at i:34893397 original size:15 final size:15
Alignment explanation
Indices: 34893377--34893424 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
34893367 TCAAAGGTGG
34893377 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
34893392 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
34893407 -TTTATGGATATAAA
1 GTTTATGGATATGAA
34893421 GTTT
1 GTTT
34893425 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:34898226 original size:30 final size:28
Alignment explanation
Indices: 34898173--34898228 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
34898163 TTCTTCCACG
* *
34898173 CTTTCTTTTTGCTCACTCTCTTTTTCAA
1 CTTTCTTTTTGCACACACTCTTTTTCAA
34898201 CTTTACTTTCTTGCACACACTCTTTTTC
1 CTTT-CTTT-TTGCACACACTCTTTTTC
34898229 TTTTTCGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 16 0.67
ACGTcount: A:0.12, C:0.30, G:0.04, T:0.54
Consensus pattern (28 bp):
CTTTCTTTTTGCACACACTCTTTTTCAA
Found at i:34899281 original size:17 final size:17
Alignment explanation
Indices: 34899254--34899287 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
34899244 TATGTTCAAA
34899254 TTTTCAGATTTTGTTTTT
1 TTTTCAGATTTT-TTTTT
34899272 TTTTCA-ATTTTTTTTT
1 TTTTCAGATTTTTTTTT
34899288 GAAACTTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 5 0.31
18 6 0.38
ACGTcount: A:0.12, C:0.06, G:0.06, T:0.76
Consensus pattern (17 bp):
TTTTCAGATTTTTTTTT
Found at i:34899526 original size:15 final size:15
Alignment explanation
Indices: 34899506--34899553 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
34899496 TTCAAAGTGG
34899506 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
34899521 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
34899536 -TTTATGGATATAAA
1 GTTTATGGATATGAA
34899550 GTTT
1 GTTT
34899554 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:34920167 original size:15 final size:14
Alignment explanation
Indices: 34920147--34920176 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
34920137 AAAGTGAAAG
34920147 ATATGTTAAAGATTA
1 ATATGTTAAA-ATTA
34920162 ATATGTTAAAATTA
1 ATATGTTAAAATTA
34920176 A
1 A
34920177 GGCTTGGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (14 bp):
ATATGTTAAAATTA
Found at i:34921324 original size:27 final size:27
Alignment explanation
Indices: 34921293--34921470 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34921283 TAAATTGTAC
34921293 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
34921320 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34921346 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
34921374 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34921402 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34921429 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34921456 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34921471 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34921407 original size:82 final size:81
Alignment explanation
Indices: 34921294--34921449 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34921284 AAATTGTACA
* *
34921294 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
34921358 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
34921375 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34921440 TGCGAGTTGA
65 TGCGAATTGA
34921450 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34921461 original size:82 final size:81
Alignment explanation
Indices: 34921290--34921470 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
34921280 GATTAAATTG
* *
34921290 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34921355 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
34921371 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34921435 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
34921453 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34921471 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34923090 original size:29 final size:27
Alignment explanation
Indices: 34923072--34923141 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
34923062 ATATTAAGTC
34923072 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
34923099 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
34923127 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
34923142 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:34923135 original size:28 final size:28
Alignment explanation
Indices: 34923072--34923169 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
34923062 ATATTAAGTC
*
34923072 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
34923099 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
34923127 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
34923156 CGCACACTTAGTGC
1 CGCACACTTAGTGC
34923170 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:34929642 original size:49 final size:47
Alignment explanation
Indices: 34929582--34930273 Score: 1118
Period size: 47 Copynumber: 14.6 Consensus size: 47
34929572 GATAATTGAG
* *
34929582 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34929629 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
34929676 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
34929723 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
34929772 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34929821 ATGTGAAAGTGTATATATATGTGACAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
34929870 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34929917 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
34929963 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
34930012 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
34930061 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34930108 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
34930155 ATGTGAAAGTGTATATATGTGATGAGGTC-AATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
34930201 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
34930248 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
34930274 TCCCGAAGGG
Statistics
Matches: 612, Mismatches: 27, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
46 61 0.10
47 315 0.51
48 25 0.04
49 211 0.34
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:34930043 original size:191 final size:190
Alignment explanation
Indices: 34929582--34930273 Score: 1144
Period size: 191 Copynumber: 3.6 Consensus size: 190
34929572 GATAATTGAG
34929582 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * *
34929645 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
34929710 GCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
34929772 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
34929837 ATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
64 ATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
34929902 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATGA
129 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
34929963 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
34930028 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
64 ATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
34930093 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
129 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
34930155 ATGTGAAAGTG--TATATATGTGATGAGGTC-AATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * *
34930217 ATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
34930274 TCCCGAAGGG
Statistics
Matches: 479, Mismatches: 18, Indels: 13
0.94 0.04 0.03
Matches are distributed among these distances:
187 54 0.11
189 28 0.06
190 21 0.04
191 190 0.40
192 96 0.20
194 90 0.19
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (190 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:34933484 original size:49 final size:49
Alignment explanation
Indices: 34933424--34933605 Score: 274
Period size: 49 Copynumber: 3.7 Consensus size: 49
34933414 AAGCTATCTA
*
34933424 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
* * * *
34933473 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCG
* *
34933524 GTACGCATAGTAGCCTGCACTTAGTACTGCACATGCGACCAATTATCCG
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
*
34933573 GTACACGTAGTAGCCTGCACTTAGTACTACACA
1 GTACACATAGTAGCCTGCACTTAGTACTACACA
34933606 CGTGACCTCA
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
49 71 0.61
50 6 0.05
51 40 0.34
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.25
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
Found at i:34933559 original size:100 final size:100
Alignment explanation
Indices: 34933424--34933610 Score: 356
Period size: 100 Copynumber: 1.9 Consensus size: 100
34933414 AAGCTATCTA
34933424 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCT
34933489 GCACTTAGTACTACACACGTGATCGAAGTTATCGG
66 GCACTTAGTACTACACACGTGATCGAAGTTATCGG
* *
34933524 GTACGCATAGTAGCCTGCACTTAGTACTGCACATGCGACCAATTATCCGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCT
34933589 GCACTTAGTACTACACACGTGA
66 GCACTTAGTACTACACACGTGA
34933611 CCTCACAATA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (100 bp):
GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCT
GCACTTAGTACTACACACGTGATCGAAGTTATCGG
Found at i:34936626 original size:36 final size:36
Alignment explanation
Indices: 34936579--34936655 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 36
34936569 ATACCCCCAC
* *
34936579 ACTTAAGCGTTTGCTTGTCTTCAAGCAAAATCTTCA
1 ACTTAAGCGTTTGCATGTCTTCAAGCAAAATCCTCA
34936615 ACTTAAGCGTTTGCATGTCTTCAAGCAAAATCCTCA
1 ACTTAAGCGTTTGCATGTCTTCAAGCAAAATCCTCA
34936651 ACTTA
1 ACTTA
34936656 CAAACAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.34
Consensus pattern (36 bp):
ACTTAAGCGTTTGCATGTCTTCAAGCAAAATCCTCA
Found at i:34938671 original size:40 final size:40
Alignment explanation
Indices: 34938626--34938817 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 40
34938616 ATAACCACAA
* *
34938626 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
34938666 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * ** * * *
34938706 TCATAAATGCCTTCGGGTCTTAGTCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * * * *
34938746 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGAT-ATAGCAACTC
* * * *
34938786 GCATAAATGCCTTCGGGACTTAGCCCAGATAT
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT
34938818 CATTCAAATG
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 132 0.96
41 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:34941838 original size:18 final size:19
Alignment explanation
Indices: 34941815--34941861 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
34941805 ATTGAAAAAG
* * *
34941815 ATAAATAAAGATAAAAGTA
1 ATAAATAAAAACAAAAATA
34941834 A-AAATAAAAACAAAAATA
1 ATAAATAAAAACAAAAATA
34941852 ATAAATAAAA
1 ATAAATAAAA
34941862 GTCTTCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (19 bp):
ATAAATAAAAACAAAAATA
Found at i:34941843 original size:6 final size:6
Alignment explanation
Indices: 34941817--34941861 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
34941807 TGAAAAAGAT
* * *
34941817 AAATAA AGATAA AAGTAA AAATAA AAACAA AAATAA TAAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA -AAATAA AA
34941862 GTCTTCAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:34943949 original size:23 final size:24
Alignment explanation
Indices: 34943909--34943953 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
34943899 TTTGCTCTTC
*
34943909 TAGCATGAACTTGACTTACCTTTT
1 TAGCATGAACTCGACTTACCTTTT
*
34943933 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGACTTACCTT
34943954 ACCTTACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.40
Consensus pattern (24 bp):
TAGCATGAACTCGACTTACCTTTT
Found at i:34944212 original size:55 final size:53
Alignment explanation
Indices: 34944081--34944274 Score: 160
Period size: 55 Copynumber: 3.6 Consensus size: 53
34944071 CTTACCATTT
* *
34944081 CCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAAATCACCAATG
* * * *
34944134 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAAATTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AAATCACCAATG
* * * *** * *
34944189 TCGTGTCTTAACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCATACCAATTC
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAAATC--ACCAA-TG
* *
34944244 CCATGCCTT-AGCATGGTCTTACATGGTATCC
1 CCATGTCTTGA-CATGGTCTTACATGGGATCC
34944275 CTAAACCCTA
Statistics
Matches: 110, Mismatches: 23, Indels: 14
0.75 0.16 0.10
Matches are distributed among these distances:
52 5 0.05
53 35 0.32
54 6 0.05
55 62 0.56
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAAATCACCAATG
Found at i:34946680 original size:15 final size:15
Alignment explanation
Indices: 34946660--34946697 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
34946650 ATATAGATAT
34946660 TGGGGCACACGGCCG
1 TGGGGCACACGGCCG
34946675 TGGGGCACACGGCCG
1 TGGGGCACACGGCCG
*
34946690 TAGGGCAC
1 TGGGGCAC
34946698 GCCCGTCTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.16, C:0.32, G:0.45, T:0.08
Consensus pattern (15 bp):
TGGGGCACACGGCCG
Found at i:34948822 original size:56 final size:56
Alignment explanation
Indices: 34948736--34948907 Score: 326
Period size: 56 Copynumber: 3.1 Consensus size: 56
34948726 ACAAGGGATG
*
34948736 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
34948792 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAAAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
34948848 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
34948904 ATGG
1 ATGG
34948908 CCAATAAACT
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 113 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:34950176 original size:79 final size:81
Alignment explanation
Indices: 34950040--34950222 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
34950030 TCGAATGATG
* *
34950040 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
34950104 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
34950119 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
34950181 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
34950199 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
34950223 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:34950238 original size:40 final size:40
Alignment explanation
Indices: 34950041--34950224 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
34950031 CGAATGATGT
* * * *
34950041 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
34950081 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
34950121 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34950159 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34950200 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34950225 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:34950246 original size:79 final size:79
Alignment explanation
Indices: 34950093--34950257 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
34950083 GGACTAAGAT
* **
34950093 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
34950158 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
34950172 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
34950235 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34950251 CCGAAGG
1 CCGAAGG
34950258 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:34957836 original size:38 final size:38
Alignment explanation
Indices: 34957785--34957860 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
34957775 CTTTTGCTAT
*
34957785 TGGCACAACCTCGCAGGCATATTTACTGAACTGTACAA
1 TGGCACAACCTCGCAAGCATATTTACTGAACTGTACAA
34957823 TGGCACAACCTCGCAAGCATATTTACTGAACTGTACAA
1 TGGCACAACCTCGCAAGCATATTTACTGAACTGTACAA
34957861 ACACTCACTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (38 bp):
TGGCACAACCTCGCAAGCATATTTACTGAACTGTACAA
Found at i:34960529 original size:48 final size:47
Alignment explanation
Indices: 34960469--34960629 Score: 207
Period size: 48 Copynumber: 3.4 Consensus size: 47
34960459 TACCATGTCT
*
34960469 CAAACATGGTCTTACACTAGCTCTAATATTAATGCCGATGTCATGTTC
1 CAAACATGGTCTTACACTAGCTCTAATATTAACGCCGATG-CATGTTC
* ** * * *
34960517 CAAACATGGTCTTACACTGGCTC-ACATATCGAGGCCAATGCATGTCC
1 CAAACATGGTCTTACACTAGCTCTA-ATATTAACGCCGATGCATGTTC
* *
34960564 CAGACATGGTCTTACACTAGCTCTCATATTAACGCCGATGCCATGTTC
1 CAAACATGGTCTTACACTAGCTCTAATATTAACGCCGATG-CATGTTC
34960612 CAAACATGGTCTTACACT
1 CAAACATGGTCTTACACT
34960630 GGCCTATATA
Statistics
Matches: 95, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
47 39 0.41
48 56 0.59
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (47 bp):
CAAACATGGTCTTACACTAGCTCTAATATTAACGCCGATGCATGTTC
Found at i:34963181 original size:6 final size:6
Alignment explanation
Indices: 34963170--34963343 Score: 157
Period size: 6 Copynumber: 28.8 Consensus size: 6
34963160 AACCAAAATG
*
34963170 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
34963218 AGTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
34963267 AGAATC AGTAA-C AGAATC AGAATC AGTATT AGTAA-C AGAATC AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC
*
34963315 AGAAT- ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
34963344 GTGAATGCAA
Statistics
Matches: 139, Mismatches: 12, Indels: 34
0.75 0.06 0.18
Matches are distributed among these distances:
5 12 0.09
6 115 0.83
7 10 0.07
8 2 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:34963184 original size:30 final size:30
Alignment explanation
Indices: 34963150--34963274 Score: 155
Period size: 30 Copynumber: 4.1 Consensus size: 30
34963140 AAGAAACATT
* *
34963150 TCAGAATT-GGAACCAAAATGAGAATCAGAA
1 TCAGAATTAGGAA-CAGAATCAGAATCAGAA
* *
34963180 TCAGAATCAGTAACAGAATCAGAATCAGAA
1 TCAGAATTAGGAACAGAATCAGAATCAGAA
*
34963210 TCA-ATATTAGTAACAGAATCAGAATCAGAA
1 TCAGA-ATTAGGAACAGAATCAGAATCAGAA
*
34963240 TCAGAATTAGGTGACAGAATCAGAATCAGAA
1 TCAGAATTAGG-AACAGAATCAGAATCAGAA
34963271 TCAG
1 TCAG
34963275 TAACAGAATC
Statistics
Matches: 84, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.01
30 57 0.68
31 26 0.31
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (30 bp):
TCAGAATTAGGAACAGAATCAGAATCAGAA
Found at i:34963498 original size:27 final size:26
Alignment explanation
Indices: 34963461--34963526 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
34963451 AGCATGGCTG
*
34963461 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
34963487 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
34963514 CCAGAATCAGATA
1 CCAGAA-CAGATA
34963527 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:34963531 original size:27 final size:27
Alignment explanation
Indices: 34963461--34963534 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
34963451 AGCATGGCTG
* *
34963461 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
34963487 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
34963514 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
34963535 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:34963541 original size:27 final size:27
Alignment explanation
Indices: 34963485--34963542 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
34963475 GTGACAGAGT
* * *
34963485 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
34963512 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
34963539 CACC
1 CACC
34963543 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:34963924 original size:27 final size:26
Alignment explanation
Indices: 34963845--34963926 Score: 101
Period size: 27 Copynumber: 3.1 Consensus size: 26
34963835 TCGATCGGTC
* * * *
34963845 AACAGATATTGTGACAGAGTCATCAA
1 AACAGATATTGTGGCAGAGCCACCAG
34963871 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
34963898 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
34963925 AA
1 AA
34963927 TGCTTCCTCC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.21
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:34964156 original size:27 final size:27
Alignment explanation
Indices: 34964126--34964321 Score: 248
Period size: 27 Copynumber: 7.3 Consensus size: 27
34964116 GGGGCAAAAT
* * * *
34964126 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
34964153 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
34964180 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
34964207 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
34964234 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
34964261 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34964288 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
34964315 AGTAATT
1 GGTAATT
34964322 TCACAATCAA
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:34964363 original size:27 final size:27
Alignment explanation
Indices: 34964326--34964903 Score: 671
Period size: 27 Copynumber: 21.4 Consensus size: 27
34964316 GTAATTTCAC
* *
34964326 AATCAAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
34964353 AATTGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
34964380 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTATA
* * *
34964407 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
34964434 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
34964461 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
34964488 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* **
34964515 AATTGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
34964542 AA-CTAAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
* * *
34964569 AATTGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
34964596 AATCAAGGGTAAAACAGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
**
34964623 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
34964650 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTATA
34964677 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
34964704 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
34964731 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTATA
** *
34964758 AATTAAGTGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * *
34964785 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
34964812 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
34964839 AATCAAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
34964866 AATCGAGGGTGAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
34964893 AATCGAGGGTA
1 AATCGAGGGTA
34964904 CTTTGGTAAT
Statistics
Matches: 470, Mismatches: 71, Indels: 20
0.84 0.13 0.04
Matches are distributed among these distances:
26 6 0.01
27 458 0.97
28 6 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:34966615 original size:30 final size:30
Alignment explanation
Indices: 34966571--34966659 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
34966561 CAAAGATAAC
*
34966571 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
34966600 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
34966630 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
34966660 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:34966619 original size:15 final size:14
Alignment explanation
Indices: 34966571--34966653 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
34966561 CAAAGATAAC
*
34966571 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
34966585 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
34966600 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
34966615 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
34966630 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
34966645 AAGAAACCC
1 AAGAAACCC
34966654 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:34966659 original size:15 final size:15
Alignment explanation
Indices: 34966582--34966659 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
34966572 AGAAAACCGA
34966582 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
34966597 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
34966611 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
34966626 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
34966642 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
34966657 ATA
1 ATA
34966660 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:34969694 original size:93 final size:93
Alignment explanation
Indices: 34969582--34969753 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
34969572 GCCCATAAGT
* *
34969582 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34969647 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
34969675 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
34969740 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
34969754 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:34969749 original size:46 final size:46
Alignment explanation
Indices: 34969574--34969749 Score: 228
Period size: 46 Copynumber: 3.8 Consensus size: 46
34969564 TGTAACCCGC
* *
34969574 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * *
34969620 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* *** *
34969666 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
34969713 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
34969750 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
46 74 0.67
47 36 0.33
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:34978261 original size:145 final size:145
Alignment explanation
Indices: 34978085--34978363 Score: 531
Period size: 145 Copynumber: 1.9 Consensus size: 145
34978075 CATGTTGAAC
34978085 TGGATTATGTGCGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACT
1 TGGATTATGTGCGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACT
*
34978150 TGATCTTCAAGTCTTCCAATATAATCTTTAGTCATAACAACTCACAAACTCCAAGAGCCATTGCC
66 TGATCTTCAAGTCTTCCAATATAATCTTTAGCCATAACAACTCACAAACTCCAAGAGCCATTGCC
34978215 CTAATCACGTTGAGG
131 CTAATCACGTTGAGG
*
34978230 TGGATTATGTGTGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACT
1 TGGATTATGTGCGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACT
*
34978295 TGATCTTCAAGTCTTCCAATATAATCTTTAGCCATAACAACTCACAAACTCCAAGAGCCATTTCC
66 TGATCTTCAAGTCTTCCAATATAATCTTTAGCCATAACAACTCACAAACTCCAAGAGCCATTGCC
34978360 CTAA
131 CTAA
34978364 ATTCAGCTTC
Statistics
Matches: 131, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
145 131 1.00
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (145 bp):
TGGATTATGTGCGATATTGATAGCAGACTTATTATCGCAATACAACTTCATTGGACCTTCCCACT
TGATCTTCAAGTCTTCCAATATAATCTTTAGCCATAACAACTCACAAACTCCAAGAGCCATTGCC
CTAATCACGTTGAGG
Found at i:34979975 original size:21 final size:21
Alignment explanation
Indices: 34979946--34979986 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
34979936 TGCTGGACAG
*
34979946 GAGCCGGAATGGGAGTGTTTA
1 GAGCCGGAATGAGAGTGTTTA
*
34979967 GAGCTGGAATGAGAGTGTTT
1 GAGCCGGAATGAGAGTGTTT
34979987 GGTTGCTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.07, G:0.41, T:0.27
Consensus pattern (21 bp):
GAGCCGGAATGAGAGTGTTTA
Found at i:34983307 original size:17 final size:16
Alignment explanation
Indices: 34983285--34983316 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
34983275 TTCAGGACAA
34983285 ATGTTGTTCAAGAATAG
1 ATGTTGTTC-AGAATAG
34983302 ATGTTGTTCAGAATA
1 ATGTTGTTCAGAATA
34983317 ACCTCTACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (16 bp):
ATGTTGTTCAGAATAG
Found at i:34987047 original size:67 final size:65
Alignment explanation
Indices: 34986932--34987063 Score: 192
Period size: 67 Copynumber: 2.0 Consensus size: 65
34986922 TTGGAAACTC
* **
34986932 AATCAAGAAAAATACTAAACTGTAATTATGACAAAAAGTCATTTAAATCTTACACTCACATTTTC
1 AATCAAGAAAAATACTAAACTGTAATTATGACAAAAAGCCATACAAATCTTACA--CACATTTTC
34986997 TT
64 TT
* * *
34986999 AATCAAGAAAAATATTAAACTGTAATTTTGGCAAAAAGCCATACAAATCTTACACACATTTTCTT
1 AATCAAGAAAAATACTAAACTGTAATTATGACAAAAAGCCATACAAATCTTACACACATTTTCTT
34987064 TCTGCAAGCA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
65 11 0.19
67 48 0.81
ACGTcount: A:0.45, C:0.17, G:0.07, T:0.32
Consensus pattern (65 bp):
AATCAAGAAAAATACTAAACTGTAATTATGACAAAAAGCCATACAAATCTTACACACATTTTCTT
Found at i:34989302 original size:9 final size:9
Alignment explanation
Indices: 34989288--34989335 Score: 71
Period size: 9 Copynumber: 5.2 Consensus size: 9
34989278 TTAAAATACC
34989288 TTCTTTTTT
1 TTCTTTTTT
34989297 TTCTTTTTT
1 TTCTTTTTT
34989306 TTCTTTTTT
1 TTCTTTTTT
34989315 TT-TTCTTTT
1 TTCTT-TTTT
34989324 TCTCTTTTTT
1 T-TCTTTTTT
34989334 TT
1 TT
34989336 TTCTTAGGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
8 2 0.06
9 26 0.72
10 6 0.17
11 2 0.06
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:34989307 original size:11 final size:11
Alignment explanation
Indices: 34989291--34989340 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 11
34989281 AAATACCTTC
34989291 TTTTTTTTC--
1 TTTTTTTTCTT
34989300 TTTTTTTTCTT
1 TTTTTTTTCTT
34989311 TTTTTTTTC--
1 TTTTTTTTCTT
*
34989320 -TTTTTCTCTT
1 TTTTTTTTCTT
34989330 TTTTTTTTCTT
1 TTTTTTTTCTT
34989341 AGGGAATGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
8 7 0.21
9 9 0.26
11 18 0.53
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:34989311 original size:18 final size:18
Alignment explanation
Indices: 34989288--34989340 Score: 81
Period size: 18 Copynumber: 2.9 Consensus size: 18
34989278 TTAAAATACC
34989288 TTCTTTTTTTTCTT-TTTT
1 TTCTTTTTTTT-TTCTTTT
34989306 TTCTTTTTTTTTTCTTTT
1 TTCTTTTTTTTTTCTTTT
34989324 TCTCTTTTTTTTTTCTT
1 T-TCTTTTTTTTTTCTT
34989341 AGGGAATGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
17 2 0.06
18 16 0.48
19 15 0.45
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (18 bp):
TTCTTTTTTTTTTCTTTT
Found at i:34989316 original size:20 final size:20
Alignment explanation
Indices: 34989291--34989340 Score: 84
Period size: 19 Copynumber: 2.5 Consensus size: 20
34989281 AAATACCTTC
*
34989291 TTTTTTTTCTTTTTTTTCTT
1 TTTTTTTTCTTTTTTCTCTT
34989311 TTTTTTTTC-TTTTTCTCTT
1 TTTTTTTTCTTTTTTCTCTT
34989330 TTTTTTTTCTT
1 TTTTTTTTCTT
34989341 AGGGAATGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 18 0.64
20 10 0.36
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (20 bp):
TTTTTTTTCTTTTTTCTCTT
Found at i:34992527 original size:58 final size:58
Alignment explanation
Indices: 34992463--34992578 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
34992453 TTTGCATGAA
*
34992463 TTACTAGGTAAAAAGTACAGTAGATAACTTTATATTTTAGAGTTATCATTTGGTTCAT
1 TTACTAGGTAAAAAGTACAGTAGATAACTCTATATTTTAGAGTTATCATTTGGTTCAT
* *
34992521 TTACTAGTTAAAAAGTACCGTAGATAACTCTATATTTTAGAGTTATCATTTGGTTCAT
1 TTACTAGGTAAAAAGTACAGTAGATAACTCTATATTTTAGAGTTATCATTTGGTTCAT
34992579 GTTGTTCAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (58 bp):
TTACTAGGTAAAAAGTACAGTAGATAACTCTATATTTTAGAGTTATCATTTGGTTCAT
Found at i:34994601 original size:22 final size:22
Alignment explanation
Indices: 34994575--34994616 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
34994565 ACCATGTAGA
**
34994575 AGGAGACACACGGTCGTGTTGG
1 AGGAGACACACAATCGTGTTGG
34994597 AGGAGACACACAATCGTGTT
1 AGGAGACACACAATCGTGTT
34994617 CTAAGACCGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.19, G:0.33, T:0.19
Consensus pattern (22 bp):
AGGAGACACACAATCGTGTTGG
Found at i:34994850 original size:21 final size:21
Alignment explanation
Indices: 34994824--34994863 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
34994814 TAAAAACACA
*
34994824 TCAAAAGTATGCCAAATCATG
1 TCAAAAGTATACCAAATCATG
*
34994845 TCAAAATTATACCAAATCA
1 TCAAAAGTATACCAAATCA
34994864 CAATCAACCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.25
Consensus pattern (21 bp):
TCAAAAGTATACCAAATCATG
Found at i:34998658 original size:17 final size:18
Alignment explanation
Indices: 34998611--34998664 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
34998601 ATAGCTCATC
* *
34998611 AGAATTGTGAGCCCACCA
1 AGAACTGTGAGCTCACCA
*
34998629 AGAACTATGAGCTCACCA
1 AGAACTGTGAGCTCACCA
*
34998647 AGATC-GTGAGCTCACCA
1 AGAACTGTGAGCTCACCA
34998664 A
1 A
34998665 CACTGCAAGC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
17 12 0.39
18 19 0.61
ACGTcount: A:0.35, C:0.28, G:0.20, T:0.17
Consensus pattern (18 bp):
AGAACTGTGAGCTCACCA
Found at i:34998692 original size:17 final size:18
Alignment explanation
Indices: 34998654--34998696 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
34998644 CCAAGATCGT
34998654 GAGCTCACCAACACTGCA
1 GAGCTCACCAACACTGCA
34998672 -AGCTCACCAA-ACATG-A
1 GAGCTCACCAACAC-TGCA
34998688 GAGCTCACC
1 GAGCTCACC
34998697 TACGAGCTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.35, C:0.37, G:0.16, T:0.12
Consensus pattern (18 bp):
GAGCTCACCAACACTGCA
Found at i:35006492 original size:14 final size:14
Alignment explanation
Indices: 35006473--35006501 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
35006463 TCTCATAATC
35006473 TATAAATTTTGAGG
1 TATAAATTTTGAGG
35006487 TATAAATTTTGAGG
1 TATAAATTTTGAGG
35006501 T
1 T
35006502 GTATCTGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (14 bp):
TATAAATTTTGAGG
Found at i:35009621 original size:38 final size:38
Alignment explanation
Indices: 35009573--35009696 Score: 196
Period size: 38 Copynumber: 3.3 Consensus size: 38
35009563 GGCTCAAAGG
* * *
35009573 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
35009611 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
35009649 CCCGGATAT-ATCAACAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAAT-ACCAGCACGAAGCCTGCGGGATTTAA
35009687 CCCGGATATA
1 CCCGGATATA
35009697 CATCAAATAT
Statistics
Matches: 80, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
37 2 0.03
38 78 0.98
ACGTcount: A:0.31, C:0.27, G:0.23, T:0.19
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:35012967 original size:3 final size:3
Alignment explanation
Indices: 35012959--35013003 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
35012949 TCACTCATCT
35012959 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
35013004 TAATAATAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:35013008 original size:3 final size:3
Alignment explanation
Indices: 35013002--35013042 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
35012992 CAACAACAAC
*
35013002 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT GAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
35013043 CCTCATATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:35014000 original size:32 final size:30
Alignment explanation
Indices: 35013963--35014044 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 30
35013953 ATTATTTAAT
*
35013963 TAATAAATATCT-TTTAACTTAATAATAATAAG
1 TAATAAATATCTATTT-ACTT-A-AATAATAAA
35013995 TAATAAATATCTATTTACTTAAATAATAAA
1 TAATAAATATCTATTTACTTAAATAATAAA
*
35014025 TAATTAAATATTTATGTTAC
1 TAA-TAAATATCTAT-TTAC
35014045 AATTATATTC
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 11 0.24
31 11 0.24
32 20 0.44
33 3 0.07
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (30 bp):
TAATAAATATCTATTTACTTAAATAATAAA
Found at i:35016469 original size:17 final size:18
Alignment explanation
Indices: 35016449--35016490 Score: 70
Period size: 17 Copynumber: 2.4 Consensus size: 18
35016439 CAAAATAGTA
35016449 AGCTCACCTA-AACTGCG
1 AGCTCACCTATAACTGCG
35016466 AGCTCA-CTATAACTGCG
1 AGCTCACCTATAACTGCG
35016483 AGCTCACC
1 AGCTCACC
35016491 AAAATGTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.13
17 19 0.83
18 1 0.04
ACGTcount: A:0.29, C:0.36, G:0.17, T:0.19
Consensus pattern (18 bp):
AGCTCACCTATAACTGCG
Found at i:35021960 original size:21 final size:21
Alignment explanation
Indices: 35021936--35021985 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
35021926 ACAGCCACTG
35021936 TTTTTCCTGTTTTGGAACCTA
1 TTTTTCCTGTTTTGGAACCTA
* *
35021957 TTTTTCCTGTTTTGGAACTTG
1 TTTTTCCTGTTTTGGAACCTA
35021978 TTTTTCCT
1 TTTTTCCT
35021986 ATCTCCACTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (21 bp):
TTTTTCCTGTTTTGGAACCTA
Found at i:35032424 original size:25 final size:25
Alignment explanation
Indices: 35032395--35032444 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
35032385 TATATAAAAG
35032395 TTAACTTTAATGTATGTATATTATA
1 TTAACTTTAATGTATGTATATTATA
35032420 TTAACTTTAATGTATGTATATTATA
1 TTAACTTTAATGTATGTATATTATA
35032445 ATAAAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.52
Consensus pattern (25 bp):
TTAACTTTAATGTATGTATATTATA
Found at i:35033706 original size:20 final size:19
Alignment explanation
Indices: 35033651--35033698 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
35033641 ATGTCAGAGT
* *
35033651 TGAGAAATG-ATTATGAGA
1 TGAGAAATGAAATATGAAA
35033669 TGAGAAATGAAATATGAAA
1 TGAGAAATGAAATATGAAA
35033688 TGATGAAATGA
1 TGA-GAAATGA
35033699 GATGTGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 9 0.35
19 10 0.38
20 7 0.27
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (19 bp):
TGAGAAATGAAATATGAAA
Found at i:35035088 original size:45 final size:45
Alignment explanation
Indices: 35035038--35035131 Score: 111
Period size: 45 Copynumber: 2.1 Consensus size: 45
35035028 GCTTATTGTT
* *
35035038 TTCAGCTC-ATTAAAGCTTACCGTTTTAGCTCA-TATGAGATTACTG
1 TTCAGCTCGA-TAAAGCTTACCATTTCAGCTCATTA-GAGATTACTG
* * *
35035083 TTCAGCTCGATAGAGCTTACCATTTCATCTCATTAGAGCTTACTG
1 TTCAGCTCGATAAAGCTTACCATTTCAGCTCATTAGAGATTACTG
35035128 TTCA
1 TTCA
35035132 TCAACTCAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
45 39 0.93
46 3 0.07
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (45 bp):
TTCAGCTCGATAAAGCTTACCATTTCAGCTCATTAGAGATTACTG
Found at i:35043334 original size:46 final size:46
Alignment explanation
Indices: 35043284--35043456 Score: 197
Period size: 46 Copynumber: 3.7 Consensus size: 46
35043274 TGATTGAGCA
35043284 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * * *
35043330 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ATG
*
35043377 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
35043423 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
35043457 AGGTCGGGTC
Statistics
Matches: 103, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 65 0.63
47 36 0.35
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:35043442 original size:93 final size:93
Alignment explanation
Indices: 35043283--35043451 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 93
35043273 ATGATTGAGC
* * *
35043283 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTTG
35043348 AGTCCGAGTTCGTGAAATGTAACTAGGT
66 AGTCCGAGTTCGTGAAATGTAACTAGGT
*
35043376 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTTG
*
35043441 AGTCTGAGTTC
66 AGTCCGAGTTC
35043452 ACTTAAGGTC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGTTG
AGTCCGAGTTCGTGAAATGTAACTAGGT
Found at i:35050954 original size:48 final size:48
Alignment explanation
Indices: 35050774--35050954 Score: 170
Period size: 48 Copynumber: 3.8 Consensus size: 48
35050764 AAGTTGACGC
* *** * *
35050774 CATGTCCCAGACAGGTCTTACACTACTAGCTTGTATATCGCGAGGCCGATG
1 CATGTCCCAGACATGTCTT--AC-ACTAGCTCACATATCTCGAGGCTGATG
* * * *
35050825 CATGTCCCAGACATGTCTTACACTAGCTCTC--GTCTCAATG-TCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCACATATCTCGAGGCT-GATG
* * *
35050871 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCACATATCTCGAGGCTGATG
* *
35050919 CATGTCCCAGACATGTCTGACACTAGCACACATATC
1 CATGTCCCAGACATGTCTTACACTAGCTCACATATC
35050955 ACCCATTATC
Statistics
Matches: 105, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
46 36 0.34
48 48 0.46
49 3 0.03
51 18 0.17
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTCACATATCTCGAGGCTGATG
Found at i:35056608 original size:55 final size:53
Alignment explanation
Indices: 35056456--35056659 Score: 201
Period size: 53 Copynumber: 3.8 Consensus size: 53
35056446 CTTTTTAAAC
35056456 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAT
1 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAT
* * * * * * * *
35056509 TCACCATTGCCATGCCTTGGCATAGTCTTACATGGGATCTTTGCCTTATCGTAGT
1 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AAT
* * * * * * *
35056564 TTATCAATGCCATGTCTTGACATGGTCTTTCATGATTTCCTTGCCTTGTAAAAA
1 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAAT
* * * * *
35056618 TTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTT
35056660 AAAGCCTAAT
Statistics
Matches: 118, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 42 0.36
54 37 0.31
55 39 0.33
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (53 bp):
TTATCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAT
Found at i:35059912 original size:22 final size:22
Alignment explanation
Indices: 35059861--35059904 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
35059851 TCAATCCATT
35059861 CAAACTTGACATCTTTCTGTAG
1 CAAACTTGACATCTTTCTGTAG
35059883 CAAACTTGACATCTTTCTGTAG
1 CAAACTTGACATCTTTCTGTAG
35059905 AATTCTTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (22 bp):
CAAACTTGACATCTTTCTGTAG
Found at i:35070992 original size:29 final size:28
Alignment explanation
Indices: 35070959--35071016 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
35070949 ACAGGGGTTT
* *
35070959 TTCACATGGCCAGGCACACACCCGTGTCC
1 TTCACACGGCCACG-ACACACCCGTGTCC
* *
35070988 TTCACACGGCCACGACACGCTCGTGTCC
1 TTCACACGGCCACGACACACCCGTGTCC
35071016 T
1 T
35071017 AGCCCGTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
28 13 0.52
29 12 0.48
ACGTcount: A:0.19, C:0.41, G:0.21, T:0.19
Consensus pattern (28 bp):
TTCACACGGCCACGACACACCCGTGTCC
Found at i:35072035 original size:47 final size:48
Alignment explanation
Indices: 35071966--35072228 Score: 258
Period size: 47 Copynumber: 5.6 Consensus size: 48
35071956 GTAAGGTGCT
* *
35071966 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCGCAA-GTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCC
* * * *
35072013 GATGCCATGTCCTAGACATGGTCTTACATTGACT-ATCATCTCGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCA-CATCTC-AAGGCC
* * *
35072061 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCAAGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCC
* * * * * *
35072107 GATG-CATATCCTAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCC
* * **
35072153 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCAAGGCC
35072201 GATG-CATGTCCCAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
35072229 AGCCAACAAC
Statistics
Matches: 182, Mismatches: 27, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 73 0.40
47 76 0.42
48 31 0.17
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCAAGGCC
Found at i:35072162 original size:93 final size:95
Alignment explanation
Indices: 35071966--35072187 Score: 303
Period size: 93 Copynumber: 2.4 Consensus size: 95
35071956 GTAAGGTGCT
*
35071966 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCGCAAGTCGATGCCATGTCCTAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCGCAAGTCGATGCCATATCCTAGACA
* *
35072031 TGGTCTTACATTGACTATCATCTCGTAGCC
66 TGGTCTTACATAGACTATCATCTCATAGCC
* * *
35072061 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCAAGGTCGATG-CATATCCTAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCGCAA-GTCGATGCCATATCCTAGAC
* *
35072123 AT-GTCTTACACTAG-CTCTCGTCTCA-ATGCC
65 ATGGTCTTACA-TAGACTATCATCTCATA-GCC
35072153 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC
35072188 TCATAATGTG
Statistics
Matches: 113, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
91 1 0.01
92 23 0.20
93 50 0.44
94 35 0.31
95 4 0.04
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCGCAAGTCGATGCCATATCCTAGACA
TGGTCTTACATAGACTATCATCTCATAGCC
Found at i:35072204 original size:94 final size:93
Alignment explanation
Indices: 35071966--35072231 Score: 298
Period size: 94 Copynumber: 2.8 Consensus size: 93
35071956 GTAAGGTGCT
*
35071966 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCGCAAGT--CGATGCCATGTCCTAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT--CAAGTGGCGATG-CATGTCCTAGA
* *
35072029 CATGGTCTTACA-TTGACTATCATCTCGTAGCC
63 CAT-GTCTTACACTAG-CTATCATCTCATAGCC
* *
35072061 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTC-TCAAG-GTCGATGCATATCCTAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC-T-C-TCATCAAGTGGCGATGCATGTCCTAGA
* *
35072122 CATGTCTTACACTAGCTCTCGTCTCA-ATGCC
63 CATGTCTTACACTAGCTATCATCTCATA-GCC
*
35072153 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AATGTGGCCGATGCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCAA-GTGG-CGATGCATGTCCTAGAC
35072217 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
35072232 CAACAACAAC
Statistics
Matches: 149, Mismatches: 9, Indels: 27
0.81 0.05 0.15
Matches are distributed among these distances:
91 5 0.03
92 26 0.17
93 48 0.32
94 63 0.42
95 6 0.04
96 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCAAGTGGCGATGCATGTCCTAGACAT
GTCTTACACTAGCTATCATCTCATAGCC
Found at i:35081826 original size:18 final size:18
Alignment explanation
Indices: 35081800--35081860 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
35081790 CAAGGTCACG
35081800 ATCAATAGCGTCACTATC
1 ATCAATAGCGTCACTATC
* * *
35081818 ATAAATAGCATCACTAGC
1 ATCAATAGCGTCACTATC
*
35081836 ATCAATATCGTCACTATC
1 ATCAATAGCGTCACTATC
35081854 ATCAATA
1 ATCAATA
35081861 AGAAAACCTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.28
Consensus pattern (18 bp):
ATCAATAGCGTCACTATC
Found at i:35086856 original size:26 final size:26
Alignment explanation
Indices: 35086827--35086878 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
35086817 GAACAAGTTA
*
35086827 AATGAATAAATTGTCCGATTTGGAGT
1 AATGAATAAATTGTCCGATTCGGAGT
35086853 AATGAATAAATTGTCCGATTCGGAGT
1 AATGAATAAATTGTCCGATTCGGAGT
35086879 CAAAATAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.33
Consensus pattern (26 bp):
AATGAATAAATTGTCCGATTCGGAGT
Found at i:35089740 original size:21 final size:21
Alignment explanation
Indices: 35089714--35089756 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
35089704 ATAAACTGAG
35089714 AACACACGATAAACCAAAACT
1 AACACACGATAAACCAAAACT
35089735 AACACACGATAAACCAAAACT
1 AACACACGATAAACCAAAACT
35089756 A
1 A
35089757 CGCTAGAACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.58, C:0.28, G:0.05, T:0.09
Consensus pattern (21 bp):
AACACACGATAAACCAAAACT
Found at i:35092394 original size:22 final size:23
Alignment explanation
Indices: 35092344--35092395 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
35092334 ATGTTTTTAC
*
35092344 TTTTATTTTATTTTAAGACTACT
1 TTTTATTTTATTTTAACACTACT
* *
35092367 TTTTATTTTATTTTCACATTA-T
1 TTTTATTTTATTTTAACACTACT
35092389 TTTTATT
1 TTTTATT
35092396 AGGATTTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTTATTTTATTTTAACACTACT
Found at i:35097913 original size:26 final size:26
Alignment explanation
Indices: 35097877--35097936 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
35097867 GAACAAGTTA
35097877 AATGAATAAATTGTCCGATTCAGAGT
1 AATGAATAAATTGTCCGATTCAGAGT
*
35097903 AATGAATAAATTGTCCGATTCGGAGT
1 AATGAATAAATTGTCCGATTCAGAGT
*
35097929 CA-GAATAA
1 AATGAATAA
35097937 CAAGTGAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 6 0.19
26 26 0.81
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (26 bp):
AATGAATAAATTGTCCGATTCAGAGT
Found at i:35102352 original size:16 final size:17
Alignment explanation
Indices: 35102331--35102363 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
35102321 CACATTGAAG
35102331 TGTTTT-TTGAAAACCA
1 TGTTTTATTGAAAACCA
35102347 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
35102364 CTTCTTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (17 bp):
TGTTTTATTGAAAACCA
Found at i:35112622 original size:46 final size:46
Alignment explanation
Indices: 35112467--35112688 Score: 173
Period size: 46 Copynumber: 4.8 Consensus size: 46
35112457 TCACTTGTGT
* * * *** *
35112467 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACCTTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACGA
* * * * *
35112513 GAGCCAATGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGACGA
* * * *
35112561 GTGCTAGTCTAAGACATGTCTGGGACATGCTTCGACCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACG-A
* * *
35112608 -AGCCAGTGTAAGACATATATAGGACATGCATCGA-CTACGAGA--A
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCT-CGAGACGA
* *
35112651 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC
35112689 ACAGATATGC
Statistics
Matches: 137, Mismatches: 31, Indels: 15
0.75 0.17 0.08
Matches are distributed among these distances:
43 1 0.01
44 11 0.08
45 13 0.09
46 64 0.47
47 27 0.20
48 21 0.15
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACGA
Found at i:35118442 original size:38 final size:38
Alignment explanation
Indices: 35118383--35118509 Score: 159
Period size: 38 Copynumber: 3.3 Consensus size: 38
35118373 AACCGTACTA
35118383 TTATTCAGGCTTAGTGCCTAGCAGGCTTAATGTCGATG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTAATGTCGATG
* * *
35118421 TTCTTCTA-GCTTAGTGCCTAGCAGGCTTAGTGTCGGTG
1 TTATTC-AGGCTTAGTGCCTAGCAGGCTTAATGTCGATG
** * *
35118459 TTATTCAGGCTTAGTGTTTAGTAGGCTTACTG-CTGATG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTTAATGTC-GATG
35118497 TTATTCAGGCTTA
1 TTATTCAGGCTTA
35118510 TTGTCAATGA
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
37 2 0.03
38 74 0.96
39 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.26, T:0.39
Consensus pattern (38 bp):
TTATTCAGGCTTAGTGCCTAGCAGGCTTAATGTCGATG
Found at i:35118950 original size:15 final size:15
Alignment explanation
Indices: 35118930--35118959 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
35118920 TAGTCATTTG
*
35118930 TAATGTTTTGGTATA
1 TAATGTTTTAGTATA
35118945 TAATGTTTTAGTATA
1 TAATGTTTTAGTATA
35118960 ATTGTGGTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (15 bp):
TAATGTTTTAGTATA
Found at i:35120588 original size:40 final size:40
Alignment explanation
Indices: 35120536--35120807 Score: 438
Period size: 40 Copynumber: 6.8 Consensus size: 40
35120526 ATAACCACAA
* * *
35120536 GCACAATTGCCTTCGGGTCTTAACCC-GAGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TATATCAACTC
* *
35120576 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
35120616 GCACAATTGCCTTCGGGTCTTAGCCCAGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
35120656 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
35120698 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
35120738 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
35120778 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
35120808 GTATTCAAAT
Statistics
Matches: 217, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
40 175 0.81
41 2 0.01
42 40 0.18
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:35120721 original size:122 final size:122
Alignment explanation
Indices: 35120536--35120815 Score: 451
Period size: 122 Copynumber: 2.3 Consensus size: 122
35120526 ATAACCACAA
* * *
35120536 GCACAATTGCCTTCGGGTCTTAACCC-GAGTATA-G-CAACTCGCACGAATGCCTTCGGGTCTTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA-TATATGTCAACTCGCACAAATGCCTTCGGGTCTTA
* *
35120598 GCCCGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCAGATATATCAACTC
65 GCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATATCAACTC
35120656 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
* *
35120721 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
66 CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATATCAACTC
*
35120778 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAT-TCAA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAA
35120816 ATGCTCATGC
Statistics
Matches: 149, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
120 28 0.19
121 7 0.05
122 114 0.77
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (122 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
CCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCAGATATATCAACTC
Found at i:35124481 original size:39 final size:39
Alignment explanation
Indices: 35124438--35124549 Score: 143
Period size: 39 Copynumber: 2.9 Consensus size: 39
35124428 ATTCACTTTT
* * *
35124438 AAGCATATAACATATTACACATATAATCACATAACATTC
1 AAGCATATAACACAATACACATATAATCACATAACATCC
**
35124477 AAGCATATGTCACAATACACATATAATCACATAACATCC
1 AAGCATATAACACAATACACATATAATCACATAACATCC
* ** *
35124516 AAGCATATATCACAATATTCATATAATAACATAA
1 AAGCATATAACACAATACACATATAATCACATAA
35124550 TGTAACACCC
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.49, C:0.21, G:0.04, T:0.27
Consensus pattern (39 bp):
AAGCATATAACACAATACACATATAATCACATAACATCC
Found at i:35126398 original size:20 final size:21
Alignment explanation
Indices: 35126358--35126406 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
35126348 GATTTTGATA
*
35126358 TACATGATTTGATATGATATG
1 TACATGATATGATATGATATG
*
35126379 TACATGATATG-TATGGTATG
1 TACATGATATGATATGATATG
*
35126399 CACATGAT
1 TACATGAT
35126407 GTATTCATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (21 bp):
TACATGATATGATATGATATG
Found at i:35126488 original size:25 final size:25
Alignment explanation
Indices: 35126454--35126523 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
35126444 GAGGAAGTGC
* *
35126454 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
35126479 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
35126504 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
35126524 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:35126536 original size:24 final size:25
Alignment explanation
Indices: 35126453--35126536 Score: 95
Period size: 25 Copynumber: 3.4 Consensus size: 25
35126443 GGAGGAAGTG
* *
35126453 CAAAAG-GGCTTTGCCCTAGTTTAC
1 CAAAAGAGGCTTTGCCCCAGTTTAT
35126477 CGAAAAG-GGCTTTGCCCCAGTTTAT
1 C-AAAAGAGGCTTTGCCCCAGTTTAT
35126502 CAAAA-AGGGCTTTGCCCCAG-TTAT
1 CAAAAGA-GGCTTTGCCCCAGTTTAT
*
35126526 TAAAAGAGGCT
1 CAAAAGAGGCT
35126537 AGGCCTCTAG
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
24 17 0.32
25 36 0.68
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
CAAAAGAGGCTTTGCCCCAGTTTAT
Found at i:35126806 original size:30 final size:32
Alignment explanation
Indices: 35126770--35126834 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 32
35126760 TGATATGATC
*
35126770 TGTGAATTAT-AAAAGGCTTCGGCCTAGTA-A
1 TGTGAATTATGAAAAGGCTTCGGCCCAGTATA
*
35126800 TGTGAATTATGAAGAGGCTTCGGCCCAGTATA
1 TGTGAATTATGAAAAGGCTTCGGCCCAGTATA
35126832 TGT
1 TGT
35126835 TGAGATTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 10 0.32
31 17 0.55
32 4 0.13
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (32 bp):
TGTGAATTATGAAAAGGCTTCGGCCCAGTATA
Found at i:35133936 original size:29 final size:29
Alignment explanation
Indices: 35133873--35133940 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
35133863 TAATCAACCA
35133873 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* * **
35133902 CACACACTTAGTGTCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
35133931 CGCACACTTA
1 CGCACACTTA
35133941 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:35134081 original size:29 final size:30
Alignment explanation
Indices: 35134042--35134120 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
35134032 CTTAATAATC
35134042 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
35134072 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
35134101 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
35134121 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:35137670 original size:11 final size:11
Alignment explanation
Indices: 35137652--35137689 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
35137642 ACAAGATTTG
35137652 ATATGATATGC
1 ATATGATATGC
*
35137663 ACATGATATG-
1 ATATGATATGC
35137673 -TATGATATGC
1 ATATGATATGC
35137683 ATATGAT
1 ATATGAT
35137690 GTATTCTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 8 0.35
11 15 0.65
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (11 bp):
ATATGATATGC
Found at i:35137771 original size:25 final size:25
Alignment explanation
Indices: 35137737--35137806 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
35137727 GAGGAAGTGC
*
35137737 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCA
**
35137762 AAAAGGGCTTTGCCCTAGTTTGTCA
1 AAAAGGGCTTTGCCCTAGTTTACCA
*
35137787 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCTAGTT
35137807 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCA
Found at i:35137819 original size:24 final size:26
Alignment explanation
Indices: 35137736--35137833 Score: 66
Period size: 25 Copynumber: 3.9 Consensus size: 26
35137726 GGAGGAAGTG
* **
35137736 CAAAAG-GGCTTTGCCCTAGTT-TAC
1 CAAAAGAGGCTTTGCCCCAGTTATGT
*
35137760 CGAAAAG-GGCTTTGCCCTAGTT-TGT
1 C-AAAAGAGGCTTTGCCCCAGTTATGT
35137785 CAAAA-AGGGCTTTGCCCCAGTTAT-T
1 CAAAAGA-GGCTTTGCCCCAGTTATGT
**
35137810 -AAAAGAGGCTAGGCCTCCAGTTAT
1 CAAAAGAGGCTTTGCC-CCAGTTAT
35137834 ATGATAAAGC
Statistics
Matches: 63, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
24 16 0.25
25 46 0.73
26 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
CAAAAGAGGCTTTGCCCCAGTTATGT
Found at i:35138089 original size:30 final size:32
Alignment explanation
Indices: 35138053--35138117 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 32
35138043 TGATATGATT
*
35138053 TGTGAATTAT-AAAAGGCTTCGGCCTAGTA-A
1 TGTGAATTATGAAAAGGCTTCGGCCCAGTATA
*
35138083 TGTGAATTATGAAGAGGCTTCGGCCCAGTATA
1 TGTGAATTATGAAAAGGCTTCGGCCCAGTATA
35138115 TGT
1 TGT
35138118 TGAGATTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 10 0.32
31 17 0.55
32 4 0.13
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (32 bp):
TGTGAATTATGAAAAGGCTTCGGCCCAGTATA
Found at i:35140531 original size:9 final size:9
Alignment explanation
Indices: 35140517--35140699 Score: 82
Period size: 9 Copynumber: 21.0 Consensus size: 9
35140507 GTTGGCATAT
35140517 CATAACTTA
1 CATAACTTA
*
35140526 CATAACTCA
1 CATAACTTA
*
35140535 CATAACATA
1 CATAACTTA
35140544 CATAA--TA
1 CATAACTTA
*
35140551 CATAA-ATA
1 CATAACTTA
* * *
35140559 TATATCATAA
1 CATAAC-TTA
*
35140569 CATAAATGT-
1 CATAACT-TA
35140578 CATAACTTA
1 CATAACTTA
35140587 CATAACTTA
1 CATAACTTA
35140596 CATAACTTA
1 CATAACTTA
35140605 CATAA--TA
1 CATAACTTA
*
35140612 CATAA-ATA
1 CATAACTTA
* * *
35140620 TATATCATAA
1 CATAAC-TTA
*
35140630 CATAAATGT-
1 CATAACT-TA
*
35140639 CATAGCTTA
1 CATAACTTA
35140648 CATAACTTA
1 CATAACTTA
35140657 CATAA--TA
1 CATAACTTA
*
35140664 CATAA-ATA
1 CATAACTTA
* * *
35140672 GATATCATA
1 CATAACTTA
*
35140681 TCATAATTTA
1 -CATAACTTA
35140691 CATAACTTA
1 CATAACTTA
35140700 ATTATACTTA
Statistics
Matches: 131, Mismatches: 30, Indels: 26
0.70 0.16 0.14
Matches are distributed among these distances:
7 21 0.16
8 17 0.13
9 80 0.61
10 13 0.10
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (9 bp):
CATAACTTA
Found at i:35140590 original size:52 final size:52
Alignment explanation
Indices: 35140526--35140699 Score: 197
Period size: 52 Copynumber: 3.2 Consensus size: 52
35140516 TCATAACTTA
*
35140526 CATAACTCACATAACATACATAATACATAAATATATATCATAACATAAATGT
1 CATAACTTACATAACATACATAATACATAAATATATATCATAACATAAATGT
35140578 CATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCATAACATAAATGT
1 CATAACTTACAT-A---AC---A--TACATAATACATAAATATATATCATAACATAAATGT
* * * * *
35140639 CATAGCTTACATAACTTACATAATACATAAATAGATATCATATCAT-AATTT
1 CATAACTTACATAACATACATAATACATAAATATATATCATAACATAAATGT
35140690 ACATAACTTA
1 -CATAACTTA
35140700 ATTATACTTA
Statistics
Matches: 105, Mismatches: 7, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
51 4 0.04
52 47 0.45
53 1 0.01
56 2 0.02
57 2 0.02
59 1 0.01
60 1 0.01
61 47 0.45
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (52 bp):
CATAACTTACATAACATACATAATACATAAATATATATCATAACATAAATGT
Found at i:35140695 original size:61 final size:60
Alignment explanation
Indices: 35140516--35140668 Score: 263
Period size: 61 Copynumber: 2.5 Consensus size: 60
35140506 TGTTGGCATA
*
35140516 TCATAACTTACATAACTCACATAACATACATAATACATAAATATATATCATAACATAAATG
1 TCATAACTTACATAACTTACATAAC-TACATAATACATAAATATATATCATAACATAAATG
35140577 TCATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCATAACATAAATG
1 TCATAACTTACATAACTTACATAAC-TACATAATACATAAATATATATCATAACATAAATG
*
35140638 TCATAGCTTACATAACTTACATAA-TACATAA
1 TCATAACTTACATAACTTACATAACTACATAA
35140669 ATAGATATCA
Statistics
Matches: 89, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
59 7 0.08
61 82 0.92
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.31
Consensus pattern (60 bp):
TCATAACTTACATAACTTACATAACTACATAATACATAAATATATATCATAACATAAATG
Found at i:35144429 original size:47 final size:47
Alignment explanation
Indices: 35144345--35144753 Score: 629
Period size: 47 Copynumber: 8.6 Consensus size: 47
35144335 TATTTGAATA
35144345 AATGTGAAAGTGTATACATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
35144394 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35144441 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
35144490 AATGTGAAAATGTATATATGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35144537 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
35144586 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
35144633 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
35144680 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
35144727 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
35144754 TCCCGAAGGG
Statistics
Matches: 332, Mismatches: 24, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
47 229 0.69
49 103 0.31
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:35144509 original size:96 final size:96
Alignment explanation
Indices: 35144345--35144753 Score: 691
Period size: 96 Copynumber: 4.3 Consensus size: 96
35144335 TATTTGAATA
*
35144345 AATGTGAAAGTGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
35144410 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
35144441 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
35144506 TATGTGATAAGGCCGAATGACCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
35144537 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
35144602 TATGTGATAAGGCCTAATAGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
35144633 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * *
35144696 TATGTGACAGGGCCGAGTGGCCAACGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
35144727 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
35144754 TCCCGAAGGG
Statistics
Matches: 295, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
94 96 0.33
95 1 0.00
96 198 0.67
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Done.