Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 112 of 325
Found at i:36297680 original size:16 final size:16
Alignment explanation
Indices: 36297638--36297680 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
36297628 GTAGATCGGT
36297638 AAAAGCCGAAATACCG
1 AAAAGCCGAAATACCG
* * *
36297654 AAAAACTGAAATGCCG
1 AAAAGCCGAAATACCG
36297670 AAAAGCCGAAA
1 AAAAGCCGAAA
36297681 GTTTGGCTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.53, C:0.21, G:0.19, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATACCG
Found at i:36297913 original size:29 final size:29
Alignment explanation
Indices: 36297884--36298003 Score: 131
Period size: 29 Copynumber: 4.2 Consensus size: 29
36297874 ATAATGTGAT
*
36297884 TTGGGCCGGATGGGCCATA-GAAATGAGA
1 TTGGGCCTGATGGGCCATATGAAATGAGA
* * *
36297912 TTGGGCCTAATGGGCTATATG-AATGTGAA
1 TTGGGCCTGATGGGCCATATGAAATGAG-A
* *
36297941 TTGGGCCTGATGGGTCATATGAACGTGA-A
1 TTGGGCCTGATGGGCCATATGAA-ATGAGA
*
36297970 TTGGGCCAGATGGGCCATAT-AAATGAGA
1 TTGGGCCTGATGGGCCATATGAAATGAGA
36297998 TTGGGC
1 TTGGGC
36298004 ATAGTGACCC
Statistics
Matches: 75, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
27 3 0.04
28 30 0.40
29 39 0.52
30 1 0.01
31 2 0.03
ACGTcount: A:0.27, C:0.13, G:0.35, T:0.25
Consensus pattern (29 bp):
TTGGGCCTGATGGGCCATATGAAATGAGA
Found at i:36297938 original size:57 final size:56
Alignment explanation
Indices: 36297872--36298003 Score: 144
Period size: 57 Copynumber: 2.3 Consensus size: 56
36297862 GTGAGCATGA
*
36297872 ATATAATGTGATTTGGGCCGGATGGGCCATA-GAA-ATGAGATTGGGCCTA-ATGGGCT
1 ATATAATGTGA-TTGGGCCGGATGGGCCATATGAACATGA-ATTGGGCC-AGATGGGCC
* * *
36297928 ATATGAATGTGAATTGGGCCTGATGGGTCATATGAACGTGAATTGGGCCAGATGGGCC
1 ATAT-AATGTG-ATTGGGCCGGATGGGCCATATGAACATGAATTGGGCCAGATGGGCC
*
36297986 ATATAAATGAGATTGGGC
1 ATAT-AATGTGATTGGGC
36298004 ATAGTGACCC
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
56 4 0.06
57 31 0.48
58 27 0.42
59 3 0.05
ACGTcount: A:0.28, C:0.12, G:0.33, T:0.27
Consensus pattern (56 bp):
ATATAATGTGATTGGGCCGGATGGGCCATATGAACATGAATTGGGCCAGATGGGCC
Found at i:36303155 original size:36 final size:36
Alignment explanation
Indices: 36303103--36303175 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
36303093 CTAACCTAAC
36303103 TTATTGAACAACTACTGTAAGCTATGTAACACTTGT
1 TTATTGAACAACTACTGTAAGCTATGTAACACTTGT
*
36303139 TTATTGAACAAGTACTGTAAGCTATGTAACACTTGT
1 TTATTGAACAACTACTGTAAGCTATGTAACACTTGT
36303175 T
1 T
36303176 GCCCGGCCCG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (36 bp):
TTATTGAACAACTACTGTAAGCTATGTAACACTTGT
Found at i:36315735 original size:17 final size:18
Alignment explanation
Indices: 36315699--36315738 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
36315689 TCTAAAGTAA
* *
36315699 TAATTTCATTCAATATAT
1 TAATTTCATACAATAAAT
36315717 TAATTT-ATACAATAAAT
1 TAATTTCATACAATAAAT
36315734 TAATT
1 TAATT
36315739 CCTTTCATAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.47
Consensus pattern (18 bp):
TAATTTCATACAATAAAT
Found at i:36316290 original size:26 final size:26
Alignment explanation
Indices: 36316254--36316337 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
36316244 TGATACAAAT
36316254 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
36316280 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
36316306 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
36316332 TGATAA
1 TGATAA
36316338 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:36317820 original size:27 final size:25
Alignment explanation
Indices: 36317779--36317851 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 25
36317769 AAAAGTAGCT
* * *
36317779 AAATTACTATAATACCCTATGTATGGA
1 AAATTACTGTTATACCCTA-G-ATGCA
*
36317806 AAATTACTGTTATACCTCTAGGTGCA
1 AAATTACTGTTATACC-CTAGATGCA
*
36317832 AAATTACCGTTATACCCTAG
1 AAATTACTGTTATACCCTAG
36317852 GGTTAATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
25 4 0.10
26 18 0.45
27 15 0.38
28 3 0.08
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (25 bp):
AAATTACTGTTATACCCTAGATGCA
Found at i:36317996 original size:27 final size:27
Alignment explanation
Indices: 36317955--36318067 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
36317945 GAGGAAGCGT
*
36317955 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
36317982 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
36318009 TCTGGTGGCTCTGCCACGATTATCTATA
1 TCTGGTGGCTCTGCCACAAATATCT-GA
* * * *
36318037 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
36318063 TCTGG
1 TCTGG
36318068 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.07
27 53 0.73
28 15 0.21
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:36318060 original size:54 final size:54
Alignment explanation
Indices: 36317953--36318067 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
36317943 TGGAGGAAGC
*
36317953 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * * *
36318007 GTTCTGGTGGCTCTGCCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCT-GATCTGGTGACTCTGCCACATATATCT
36318061 GTTCTGG
1 GTTCTGG
36318068 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:36320405 original size:40 final size:40
Alignment explanation
Indices: 36320350--36320566 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
36320340 CGGATGATAA
* * *
36320350 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
36320390 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36320430 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36320470 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
36320510 CCGGGCTATGTCCCGATGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
36320549 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
36320567 TACTTCGCTT
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
38 14 0.09
39 15 0.10
40 128 0.82
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36325511 original size:46 final size:47
Alignment explanation
Indices: 36325436--36325539 Score: 183
Period size: 46 Copynumber: 2.2 Consensus size: 47
36325426 TAGTATTAAT
*
36325436 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
36325483 TATGTGATAAGG-CGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
36325529 AATGTGATAAG
1 TATGTGATAAG
36325540 TCCCGAAGGG
Statistics
Matches: 55, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
46 43 0.78
47 12 0.22
ACGTcount: A:0.35, C:0.07, G:0.31, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:36346166 original size:41 final size:43
Alignment explanation
Indices: 36346067--36346215 Score: 142
Period size: 41 Copynumber: 3.5 Consensus size: 43
36346057 CAATGTCAAC
** * ** *
36346067 GTCCCAGATGTGGTCTTACATGCTATCTCATATCGATGCCATT
1 GTCCCAGACATGGTCTTACATGCAATCAAATATCGATGCCAAT
*
36346110 GTCCCAGACAGGGTCTTACATG-AATCAAATA-CGATGCCAAT
1 GTCCCAGACATGGTCTTACATGCAATCAAATATCGATGCCAAT
* * * *
36346151 GTCCCAAACATGGTCTTAC-TCGTAACCACATATATCGATGCCAAC
1 GTCCCAGACATGGTCTTACAT-GCAATCA-A-ATATCGATGCCAAT
*
36346196 GTCCCAGACGTGGTCTTACA
1 GTCCCAGACATGGTCTTACA
36346216 AGAGAACACA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
40 1 0.01
41 27 0.31
42 10 0.11
43 20 0.23
44 3 0.03
45 26 0.30
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGCAATCAAATATCGATGCCAAT
Found at i:36346226 original size:45 final size:44
Alignment explanation
Indices: 36346096--36346228 Score: 130
Period size: 45 Copynumber: 3.0 Consensus size: 44
36346086 ATGCTATCTC
* * *
36346096 ATATCGATGCCATTGTCCCAGACAG-GGTCTTACATGAATCA-A-
1 ATATCGATGCCAATGTCCCAGAC-GTGGTCTTACAAGAAACACAT
* * ** *
36346138 ATA-CGATGCCAATGTCCCAAACATGGTCTTACTCGTAACCACAT
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTACAAG-AAACACAT
*
36346182 ATATCGATGCCAACGTCCCAGACGTGGTCTTACAAGAGAACACAT
1 ATATCGATGCCAATGTCCCAGACGTGGTCTTACAAGA-AACACAT
36346227 AT
1 AT
36346229 CTGAAATCCT
Statistics
Matches: 73, Mismatches: 12, Indels: 9
0.78 0.13 0.10
Matches are distributed among these distances:
41 26 0.36
42 7 0.10
43 1 0.01
44 4 0.05
45 35 0.48
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.24
Consensus pattern (44 bp):
ATATCGATGCCAATGTCCCAGACGTGGTCTTACAAGAAACACAT
Found at i:36348522 original size:40 final size:40
Alignment explanation
Indices: 36348443--36348602 Score: 205
Period size: 40 Copynumber: 4.0 Consensus size: 40
36348433 CGGATGATAA
* * *
36348443 CCGGACTAAGATCCGAAGGCATTCATGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* * * * *
36348483 CCGGGCTATGTCCCGAAGGAATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-CTATAT
*
36348523 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
* *
36348563 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
36348603 TTGGCTAAAT
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
39 2 0.02
40 99 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGCTATAT
Found at i:36350735 original size:25 final size:25
Alignment explanation
Indices: 36350706--36350755 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
36350696 CATTATCTTA
36350706 CCATTTC-ATCATATAAATATATCAT
1 CCATTTCAAT-ATATAAATATATCAT
*
36350731 CCATTTCAATATATCAATATATCAT
1 CCATTTCAATATATAAATATATCAT
36350756 GTATTGCCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 21 0.91
26 2 0.09
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (25 bp):
CCATTTCAATATATAAATATATCAT
Found at i:36356654 original size:40 final size:40
Alignment explanation
Indices: 36356590--36356665 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
36356580 TATACATATA
* * *
36356590 TAGCCGAAGCTATCTCCAATCGCACACCAAGTGCCACATT
1 TAGCCGAAGCTATCTCAAACCGCACAACAAGTGCCACATT
* *
36356630 TAGCCGAAGCTATTTCAAACCGCACAATAAGTGCCA
1 TAGCCGAAGCTATCTCAAACCGCACAACAAGTGCCA
36356666 TTTTATTTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.33, C:0.32, G:0.16, T:0.20
Consensus pattern (40 bp):
TAGCCGAAGCTATCTCAAACCGCACAACAAGTGCCACATT
Found at i:36360608 original size:11 final size:10
Alignment explanation
Indices: 36360583--36360643 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
36360573 ACCAATAAAA
36360583 TAAA-TGAGC
1 TAAATTGAGC
*
36360592 TGAATTGTAGC
1 TAAATTG-AGC
36360603 TAAATTGAGC
1 TAAATTGAGC
**
36360613 TCGATTGAGC
1 TAAATTGAGC
36360623 TGAAA-TGAGC
1 T-AAATTGAGC
*
36360633 TCAATTGAGC
1 TAAATTGAGC
36360643 T
1 T
36360644 GGTCAGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:36360644 original size:20 final size:20
Alignment explanation
Indices: 36360584--36360644 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
36360574 CCAATAAAAT
*
36360584 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
36360604 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
36360625 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
36360645 GTCAGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:36362687 original size:33 final size:33
Alignment explanation
Indices: 36362649--36362711 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
36362639 GATTACTCAC
36362649 TTCACTCG-TTTCTTTT-ATAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTTCA-AG-CTCTCTTTCTTT
*
36362682 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTTCAAGCTCTCTTTC
36362712 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.13, C:0.25, G:0.06, T:0.56
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:36362738 original size:21 final size:21
Alignment explanation
Indices: 36362709--36362764 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 21
36362699 CAAGCTCTCT
*
36362709 TTCAATTTCTTTTTTCGCTTT-
1 TTCATTTTCTTTTTTC-CTTTC
* ** *
36362730 TTCTTTTTCAATTTTCTTTTC
1 TTCATTTTCTTTTTTCCTTTC
36362751 TTCATTTTCTTTTT
1 TTCATTTTCTTTTT
36362765 CTCTCACTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.71
Consensus pattern (21 bp):
TTCATTTTCTTTTTTCCTTTC
Found at i:36362757 original size:14 final size:14
Alignment explanation
Indices: 36362708--36362764 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
36362698 TCAAGCTCTC
36362708 TTTCAA-TTTCTTT
1 TTTCAATTTTCTTT
**
36362721 TTTCGCTTTT-TCTT
1 TTTCAATTTTCT-TT
36362735 TTTCAATTTTCTTT
1 TTTCAATTTTCTTT
36362749 TCTTC-ATTTTCTTT
1 T-TTCAATTTTCTTT
36362763 TT
1 TT
36362765 CTCTCACTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
13 6 0.17
14 26 0.72
15 4 0.11
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.72
Consensus pattern (14 bp):
TTTCAATTTTCTTT
Found at i:36362792 original size:18 final size:18
Alignment explanation
Indices: 36362771--36362829 Score: 73
Period size: 18 Copynumber: 3.3 Consensus size: 18
36362761 TTTTCTCTCA
36362771 CTTTTTTGATTTCTTTTT
1 CTTTTTTGATTTCTTTTT
***
36362789 CTTTTGCAATTTCTTTTT
1 CTTTTTTGATTTCTTTTT
*
36362807 CTTTTTTGTTTTCTTTTT
1 CTTTTTTGATTTCTTTTT
*
36362825 GTTTT
1 CTTTT
36362830 CTTTCAATTT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.05, C:0.12, G:0.07, T:0.76
Consensus pattern (18 bp):
CTTTTTTGATTTCTTTTT
Found at i:36362818 original size:12 final size:12
Alignment explanation
Indices: 36362803--36362833 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
36362793 TGCAATTTCT
36362803 TTTTCTTTTTTG
1 TTTTCTTTTTTG
36362815 TTTTC-TTTTTG
1 TTTTCTTTTTTG
36362826 TTTTCTTT
1 TTTTCTTT
36362834 CAATTTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (12 bp):
TTTTCTTTTTTG
Found at i:36362846 original size:6 final size:6
Alignment explanation
Indices: 36362726--36362833 Score: 60
Period size: 6 Copynumber: 17.7 Consensus size: 6
36362716 TCTTTTTTCG
* * * **
36362726 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
* * **
36362777 -TGATTT CTTTTT CTTTTG CAATTT CTTTTT CTTTTT -TGTTTT CTTTTT
1 CT-TTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CT-TTTT CTTTTT
*
36362825 -GTTTT CTTT
1 CTTTTT CTTT
36362834 CAATTTCTTT
Statistics
Matches: 74, Mismatches: 21, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
5 6 0.08
6 54 0.73
7 11 0.15
8 3 0.04
ACGTcount: A:0.06, C:0.17, G:0.04, T:0.73
Consensus pattern (6 bp):
CTTTTT
Found at i:36364027 original size:10 final size:11
Alignment explanation
Indices: 36364012--36364040 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
36364002 AACTCAAATT
36364012 TTTTTTTTGA-
1 TTTTTTTTGAC
36364022 TTTTTTTTGAC
1 TTTTTTTTGAC
36364033 TTTTTTTT
1 TTTTTTTT
36364041 ACATTACGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.07, C:0.03, G:0.07, T:0.83
Consensus pattern (11 bp):
TTTTTTTTGAC
Found at i:36365323 original size:11 final size:10
Alignment explanation
Indices: 36365298--36365358 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
36365288 ACCAATAAAA
36365298 TAAA-TGAGC
1 TAAATTGAGC
*
36365307 TGAATTGTAGC
1 TAAATTG-AGC
36365318 TAAATTGAGC
1 TAAATTGAGC
**
36365328 TCGATTGAGC
1 TAAATTGAGC
36365338 TGAAA-TGAGC
1 T-AAATTGAGC
*
36365348 TCAATTGAGC
1 TAAATTGAGC
36365358 T
1 T
36365359 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:36365359 original size:20 final size:20
Alignment explanation
Indices: 36365299--36365359 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
36365289 CCAATAAAAT
*
36365299 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
36365319 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
36365340 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
36365360 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:36370107 original size:42 final size:41
Alignment explanation
Indices: 36370059--36370382 Score: 227
Period size: 42 Copynumber: 7.3 Consensus size: 41
36370049 ATAGTCCAAC
*
36370059 TATGGTCTTACACAAAGTCTCACATCGATGCCATGTCCCAGA
1 TATGGTCTTACAC-AAGTCTCATATCGATGCCATGTCCCAGA
* * * * ***
36370101 CATGGTCTTATACAAAATCACATATCGATGCCGCATCCCAGA
1 TATGGTCTTACAC-AAGTCTCATATCGATGCCATGTCCCAGA
* * * * * * *
36370143 CACGGTCTTACATGAAATCTCATACCGAAGCCATATCCCAGA
1 TATGGTCTTACA-CAAGTCTCATATCGATGCCATGTCCCAGA
36370185 TATGGTCTTACACGTAA-TCTCATATCGATGCCGATGTTATATCCCAGA
1 TATGGTCTTACAC--AAGTCTCATATCGATGCC-ATG-----TCCCAGA
*
36370233 TATGGTCTTACACAAGATCTCATATCGATGCTAATGTCATATGCCAGA
1 TATGGTCTTACACAAG-TCTCATATCGATGC-CATGTC-----CCAGA
* *
36370281 TATGGTCTTACACAAGATCTCATATCAATGCTGATGCCATATCCCAAA
1 TATGGTCTTACACAAG-TCTC--AT--AT-C-GATGCCATGTCCCAGA
*
36370329 TATGGTCTTACACAGGATCTCATATCGATGCCATGTCCCAGA
1 TATGGTCTTACACAAG-TCTCATATCGATGCCATGTCCCAGA
*
36370371 CATGGTCTTACA
1 TATGGTCTTACA
36370383 TGTATCACAA
Statistics
Matches: 229, Mismatches: 30, Indels: 46
0.75 0.10 0.15
Matches are distributed among these distances:
42 115 0.50
43 7 0.03
44 2 0.01
46 4 0.02
48 87 0.38
50 2 0.01
52 2 0.01
53 5 0.02
54 5 0.02
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (41 bp):
TATGGTCTTACACAAGTCTCATATCGATGCCATGTCCCAGA
Found at i:36370228 original size:48 final size:48
Alignment explanation
Indices: 36370174--36370365 Score: 271
Period size: 48 Copynumber: 4.0 Consensus size: 48
36370164 ATACCGAAGC
*
36370174 CATATCCCAGATATGGTCTTACACGTA-ATCTCATATCGATGCCGATGT
1 CATATCCCAGATATGGTCTTACAC-AAGATCTCATATCGATGCCGATGT
* **
36370222 TATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCTAATGT
1 CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGATGT
* * * *
36370270 CATATGCCAGATATGGTCTTACACAAGATCTCATATCAATGCTGATGC
1 CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGATGT
* *
36370318 CATATCCCAAATATGGTCTTACACAGGATCTCATATCGATGCC-ATGT
1 CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGATGT
36370365 C
1 C
36370366 CCAGACATGG
Statistics
Matches: 128, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
47 5 0.04
48 123 0.96
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.31
Consensus pattern (48 bp):
CATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGATGT
Found at i:36370443 original size:37 final size:37
Alignment explanation
Indices: 36370354--36370529 Score: 214
Period size: 37 Copynumber: 4.8 Consensus size: 37
36370344 GATCTCATAT
**
36370354 CGATGCCATGTCCCAGAC-ATGGTCTTACATG-TATCA
1 CGATGCCATAACCCAG-CTATGGTCTTACATGCTATCA
* * *
36370390 CAATGCTATAGCCCAGCTATGGTCTTACATG-TCATCA
1 CGATGCCATAACCCAGCTATGGTCTTACATGCT-ATCA
* * *
36370427 CGATGCCATAAACCAGCTATGGCCTTACATGCTATTA
1 CGATGCCATAACCCAGCTATGGTCTTACATGCTATCA
* *
36370464 CGATGCCATAACCCAGCTATGGCCTTACATGCTATTA
1 CGATGCCATAACCCAGCTATGGTCTTACATGCTATCA
*
36370501 CGATGCCATAGCCCAGCTATGGTCTTACA
1 CGATGCCATAACCCAGCTATGGTCTTACA
36370530 CGTACAACAT
Statistics
Matches: 124, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
35 1 0.01
36 26 0.21
37 96 0.77
38 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (37 bp):
CGATGCCATAACCCAGCTATGGTCTTACATGCTATCA
Found at i:36373040 original size:28 final size:28
Alignment explanation
Indices: 36373008--36373084 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
36372998 ATCTTCGATG
36373008 TCTCGTACACTAAGTGCCATACTCAATA
1 TCTCGTACACTAAGTGCCATACTCAATA
* * * *
36373036 TCTCGCACACCAAGTGCCATTCTTAATA
1 TCTCGTACACTAAGTGCCATACTCAATA
* *
36373064 TTTTGTACACTAAGTGCCATA
1 TCTCGTACACTAAGTGCCATA
36373085 TACATATATA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (28 bp):
TCTCGTACACTAAGTGCCATACTCAATA
Found at i:36380171 original size:48 final size:48
Alignment explanation
Indices: 36380065--36380244 Score: 184
Period size: 48 Copynumber: 3.7 Consensus size: 48
36380055 GGTTATGTGT
* * * *** *
36380065 GAGCCAGTGTAAGACCATGTTTGGGACGTGGCATCGGCATTGTTATAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGA
* * *
36380113 GATCTC-GTGTAAGACCATGCCTGGGACATGGCATCGGCCTCAATATGC
1 GAGC-CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGA
* * * *
36380161 GAGCCAGTGTAAGACCATGTCTGAGACATGGCATCGACACTGATGTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCA-ATATGA
*
36380211 GAGCCAGTGTAAGACCGTG-CTGGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
36380245 AAAATTTTAC
Statistics
Matches: 109, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
47 1 0.01
48 68 0.62
49 18 0.17
50 22 0.20
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAATATGA
Found at i:36381858 original size:46 final size:45
Alignment explanation
Indices: 36381798--36381967 Score: 148
Period size: 46 Copynumber: 3.7 Consensus size: 45
36381788 TCTTAGCCAG
36381798 TGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTTGAGGTCGA
1 TGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTTGAGG-CGA
* * ** * *
36381844 TGCATGTCCTAGACATGTCTTACACTAGCACT-CGTCTCAATGCCA
1 TGCATGTCCCAGACATGTCTTACACTAGC-TTACGTCTTGAGGCGA
* * ** *
36381889 GTGCCATGTCCTAGACATGGTCTTACACTGGCTCTTA--TAATGTGGCTGA
1 -TG-CATGTCCCAGACAT-GTCTTACACTAG--CTTACGTCTTGAGGC-GA
36381938 TGCATGTCCCAGACATGTCTTACACTAGCT
1 TGCATGTCCCAGACATGTCTTACACTAGCT
36381968 CACATAAATG
Statistics
Matches: 99, Mismatches: 17, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
44 2 0.02
45 2 0.02
46 48 0.48
47 28 0.28
48 16 0.16
49 2 0.02
50 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (45 bp):
TGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTTGAGGCGA
Found at i:36381912 original size:94 final size:92
Alignment explanation
Indices: 36381702--36381966 Score: 249
Period size: 94 Copynumber: 2.8 Consensus size: 92
36381692 AAAGTACCGA
* * * * *
36381702 TGCCATGTCCCAGACATGGTCTTACATTAGCTCT-CGCCTATCCATGTCGATGCCATGTCCCAAA
1 TGCCATGTCCCAGACATGGTCTTACACTAGCT-TACGTCT-T-GAGGTCGATG-CATGTCCCAGA
*
36381766 CATGCTCTTACACT-GACACAACTCTTAGCCAG
62 CATG-TCTTACACTAG-CACAACTCTAAGCCAG
*
36381798 TG-CATGTCCCAGACAT-GTCTTACACTAGCTTACGTCTTGAGGTCGATGCATGTCCTAGACATG
1 TGCCATGTCCCAGACATGGTCTTACACTAGCTTACGTCTTGAGGTCGATGCATGTCCCAGACATG
*
36381861 TCTTACACTAGCAC-TCGTCTCAATGCCAG
66 TCTTACACTAGCACAAC-TCT-AA-GCCAG
* * ** *
36381890 TGCCATGTCCTAGACATGGTCTTACACTGGCTCTTA--TAATGTGG-CTGATGCATGTCCCAGAC
1 TGCCATGTCCCAGACATGGTCTTACACTAG--CTTACGTCTTGAGGTC-GATGCATGTCCCAGAC
36381952 ATGTCTTACACTAGC
63 ATGTCTTACACTAGC
36381967 TCACATAAAT
Statistics
Matches: 145, Mismatches: 14, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
89 1 0.01
90 15 0.10
91 15 0.10
92 15 0.10
93 16 0.11
94 63 0.43
95 14 0.10
96 6 0.04
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (92 bp):
TGCCATGTCCCAGACATGGTCTTACACTAGCTTACGTCTTGAGGTCGATGCATGTCCCAGACATG
TCTTACACTAGCACAACTCTAAGCCAG
Found at i:36390905 original size:32 final size:32
Alignment explanation
Indices: 36390864--36390928 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
36390854 ATTAATAAAG
36390864 TTAGCCTAATAATGAACACAAATATGTGCACA
1 TTAGCCTAATAATGAACACAAATATGTGCACA
36390896 TTAGCCTAATAATGAACACAAATATGTGCACA
1 TTAGCCTAATAATGAACACAAATATGTGCACA
36390928 T
1 T
36390929 AATTTATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.26
Consensus pattern (32 bp):
TTAGCCTAATAATGAACACAAATATGTGCACA
Found at i:36391491 original size:22 final size:22
Alignment explanation
Indices: 36391466--36391510 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
36391456 ATTATGTGTA
*
36391466 TTAATTCATAATTTAA-TTAATT
1 TTAATTCAT-ATTCAATTTAATT
*
36391488 TTAATTTATATTCAATTTAATT
1 TTAATTCATATTCAATTTAATT
36391510 T
1 T
36391511 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (22 bp):
TTAATTCATATTCAATTTAATT
Found at i:36393765 original size:43 final size:43
Alignment explanation
Indices: 36393715--36393797 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
36393705 GATATATGTG
*
36393715 GCATCCGAGCTCGATGAGTGG-TCCAAGTTCATTATGGATGCGA
1 GCATCCGAGCTCGATGAGTGGCT-CAAGTTCATAATGGATGCGA
* *
36393758 GCATCCGAGCTCGTTGAGTGGCTCGAGTTCATAATGGATG
1 GCATCCGAGCTCGATGAGTGGCTCAAGTTCATAATGGATG
36393798 TAATACATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 35 0.97
44 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (43 bp):
GCATCCGAGCTCGATGAGTGGCTCAAGTTCATAATGGATGCGA
Found at i:36394580 original size:18 final size:18
Alignment explanation
Indices: 36394557--36394611 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
36394547 GCATGTCTCG
36394557 ATGCATTGATGGTGTTTT
1 ATGCATTGATGGTGTTTT
**
36394575 ATGCA-TGCAT-GTG-TCG
1 ATGCATTG-ATGGTGTTTT
*
36394591 ATGCATTGATGATGTTTT
1 ATGCATTGATGGTGTTTT
36394609 ATG
1 ATG
36394612 TGGTTGTGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
16 8 0.29
17 9 0.32
18 11 0.39
ACGTcount: A:0.20, C:0.09, G:0.27, T:0.44
Consensus pattern (18 bp):
ATGCATTGATGGTGTTTT
Found at i:36394584 original size:34 final size:34
Alignment explanation
Indices: 36394541--36394611 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
36394531 CTAATTGTTC
*
36394541 ATGCATGCATGTCTCGATGCATTGATGGTGTTTT
1 ATGCATGCATGTCTCGATGCATTGATGATGTTTT
*
36394575 ATGCATGCATGTGTCGATGCATTGATGATGTTTT
1 ATGCATGCATGTCTCGATGCATTGATGATGTTTT
36394609 ATG
1 ATG
36394612 TGGTTGTGTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.20, C:0.13, G:0.27, T:0.41
Consensus pattern (34 bp):
ATGCATGCATGTCTCGATGCATTGATGATGTTTT
Found at i:36394596 original size:16 final size:16
Alignment explanation
Indices: 36394541--36394596 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
36394531 CTAATTGTTC
*
36394541 ATGCATGCATGTCTCG
1 ATGCATGCATGTGTCG
**
36394557 ATGCATTG-ATGGTGTTTT
1 ATGCA-TGCAT-GTG-TCG
36394575 ATGCATGCATGTGTCG
1 ATGCATGCATGTGTCG
36394591 ATGCAT
1 ATGCAT
36394597 TGATGATGTT
Statistics
Matches: 31, Mismatches: 5, Indels: 8
0.70 0.11 0.18
Matches are distributed among these distances:
16 14 0.45
17 9 0.29
18 8 0.26
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.38
Consensus pattern (16 bp):
ATGCATGCATGTGTCG
Found at i:36398905 original size:21 final size:21
Alignment explanation
Indices: 36398879--36399098 Score: 246
Period size: 21 Copynumber: 9.9 Consensus size: 21
36398869 GATTTCCAAC
36398879 TGGTAATGGTCAAAATTGGAA
1 TGGTAATGGTCAAAATTGGAA
36398900 TGGTAATGGTCAAAATTGGCAGGCTAA
1 TGGTAATGGTCAAAATT----GG--AA
*
36398927 TGGTACTGGTCAAAATTGGAA
1 TGGTAATGGTCAAAATTGGAA
36398948 TGGTAATGGTCAAAATTGGCAGGCTAA
1 TGGTAATGGTCAAAATT----GG--AA
* *
36398975 TGGTACTGGTCAAAATTGGGA
1 TGGTAATGGTCAAAATTGGAA
*
36398996 TGGTAATGGTCAAAATTGGTA
1 TGGTAATGGTCAAAATTGGAA
*
36399017 -GGCTAATGGTCAAAATTGGGA
1 TGG-TAATGGTCAAAATTGGAA
*
36399038 TGGTAATGGTCAAAATTGGCA
1 TGGTAATGGTCAAAATTGGAA
36399059 -GGATAATGGTCAAAATTGGAA
1 TGG-TAATGGTCAAAATTGGAA
36399080 TGGTAATGGTCAAAATTGG
1 TGGTAATGGTCAAAATTGG
36399099 GGTGCCTTTT
Statistics
Matches: 174, Mismatches: 9, Indels: 32
0.81 0.04 0.15
Matches are distributed among these distances:
20 4 0.02
21 122 0.70
22 4 0.02
23 4 0.02
25 4 0.02
27 36 0.21
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (21 bp):
TGGTAATGGTCAAAATTGGAA
Found at i:36398909 original size:27 final size:27
Alignment explanation
Indices: 36398898--36399026 Score: 147
Period size: 27 Copynumber: 5.2 Consensus size: 27
36398888 TCAAAATTGG
36398898 AATGGTAATGGTCAAAATTGGCAGGCT
1 AATGGTAATGGTCAAAATTGGCAGGCT
*
36398925 AATGGTACTGGTCAAAATT----GG--
1 AATGGTAATGGTCAAAATTGGCAGGCT
36398946 AATGGTAATGGTCAAAATTGGCAGGCT
1 AATGGTAATGGTCAAAATTGGCAGGCT
*
36398973 AATGGTACTGGTCAAAATT-G--GG--
1 AATGGTAATGGTCAAAATTGGCAGGCT
*
36398995 -ATGGTAATGGTCAAAATTGGTAGGCT
1 AATGGTAATGGTCAAAATTGGCAGGCT
36399021 AATGGT
1 AATGGT
36399027 CAAAATTGGG
Statistics
Matches: 86, Mismatches: 4, Indels: 24
0.75 0.04 0.21
Matches are distributed among these distances:
21 35 0.41
22 1 0.01
23 2 0.02
24 4 0.05
25 2 0.02
26 1 0.01
27 41 0.48
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (27 bp):
AATGGTAATGGTCAAAATTGGCAGGCT
Found at i:36398950 original size:48 final size:47
Alignment explanation
Indices: 36398879--36399098 Score: 307
Period size: 48 Copynumber: 4.9 Consensus size: 47
36398869 GATTTCCAAC
36398879 TGGTAATGGTCAAAATTGGAATGGTAATGGTCAAAATTGGCAGGCTAA
1 TGGTAATGGTCAAAATTGGAATGGTAATGGTCAAAATTGGCAGGCT-A
*
36398927 TGGTACTGGTCAAAATTGGAATGGTAATGGTCAAAATTGGCAGGCTAA
1 TGGTAATGGTCAAAATTGGAATGGTAATGGTCAAAATTGGCAGGCT-A
* * *
36398975 TGGTACTGGTCAAAATTGGGATGGTAATGGTCAAAATTGGTAGGC--
1 TGGTAATGGTCAAAATTGGAATGGTAATGGTCAAAATTGGCAGGCTA
*
36399020 ---TAATGGTCAAAATTGGGATGGTAATGGTCAAAATTGGCAGG--A
1 TGGTAATGGTCAAAATTGGAATGGTAATGGTCAAAATTGGCAGGCTA
36399062 ---TAATGGTCAAAATTGGAATGGTAATGGTCAAAATTGG
1 TGGTAATGGTCAAAATTGGAATGGTAATGGTCAAAATTGG
36399099 GGTGCCTTTT
Statistics
Matches: 165, Mismatches: 6, Indels: 8
0.92 0.03 0.04
Matches are distributed among these distances:
42 75 0.45
48 90 0.55
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TGGTAATGGTCAAAATTGGAATGGTAATGGTCAAAATTGGCAGGCTA
Found at i:36408077 original size:13 final size:13
Alignment explanation
Indices: 36408059--36408086 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36408049 TCATAAAATT
36408059 TAAAATATATATA
1 TAAAATATATATA
36408072 TAAAATATATATA
1 TAAAATATATATA
36408085 TA
1 TA
36408087 GTTGTTATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TAAAATATATATA
Found at i:36408376 original size:17 final size:18
Alignment explanation
Indices: 36408354--36408387 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
36408344 AATTTTGAAA
36408354 TTTAT-AGTATCAATACT
1 TTTATAAGTATCAATACT
36408371 TTTATAAGTATCAATAC
1 TTTATAAGTATCAATAC
36408388 CAATTTGACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (18 bp):
TTTATAAGTATCAATACT
Found at i:36410384 original size:48 final size:48
Alignment explanation
Indices: 36410313--36410436 Score: 185
Period size: 48 Copynumber: 2.6 Consensus size: 48
36410303 TGAGATCCCA
** *
36410313 TGTAAGACCATGAGTGGGACATGGCATCGGCGTTGATATGTGTACCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTACCAG
* * *
36410361 TGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTACCAG
*
36410409 CGTAAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
36410437 AGCACCGATA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 69 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTACCAG
Found at i:36413992 original size:47 final size:47
Alignment explanation
Indices: 36413921--36414178 Score: 392
Period size: 47 Copynumber: 5.4 Consensus size: 47
36413911 TATCACAGTT
* * * *
36413921 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCATATAC
* *
36413968 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC
36414015 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATAC
*
36414064 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC
*
36414111 GTACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATAC
36414160 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
36414179 GTAACAAAAT
Statistics
Matches: 194, Mismatches: 12, Indels: 8
0.91 0.06 0.04
Matches are distributed among these distances:
47 122 0.63
48 2 0.01
49 70 0.36
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC
Found at i:36414104 original size:96 final size:96
Alignment explanation
Indices: 36413921--36414178 Score: 432
Period size: 96 Copynumber: 2.7 Consensus size: 96
36413911 TATCACAGTT
* * * * *
36413921 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTAT--CATATATATATACTTTCACATT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATT
36413983 CATCACATTGGCCATTCGGCCTTATCACATAC
65 CATCACATTGGCCATTCGGCCTTATCACATAC
36414015 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
36414080 ATCACATTGGCCATTCGGCCTTATCACATAC
66 ATCACATTGGCCATTCGGCCTTATCACATAC
*
36414111 GTACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
36414176 ATC
66 ATC
36414179 GTAACAAAAT
Statistics
Matches: 155, Mismatches: 6, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
94 34 0.22
95 2 0.01
96 119 0.77
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (96 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
ATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:36414105 original size:22 final size:22
Alignment explanation
Indices: 36414080--36414155 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
36414070 TTTCACATTC
36414080 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * * *
36414102 ATCACATACGTACACTTTC-ACATT
1 ATCACAT-TG-GC-CATTCGGCCTT
36414126 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
36414149 ATCACAT
1 ATCACAT
36414156 ATACATACAC
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 18 0.46
23 5 0.13
24 5 0.13
25 11 0.28
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:36421847 original size:28 final size:28
Alignment explanation
Indices: 36421794--36421877 Score: 114
Period size: 28 Copynumber: 3.0 Consensus size: 28
36421784 CATTTTGTGC
*
36421794 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTAGTGTGTTTTGGA-GGATTATAT
*
36421823 TATTCTAGTGTGTTTGGGAGGATTATAT
1 TATTCTAGTGTGTTTTGGAGGATTATAT
* * *
36421851 GATACTTGTGTGTTTTGGAGGATTATA
1 TATTCTAGTGTGTTTTGGAGGATTATA
36421878 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 32 0.65
29 17 0.35
ACGTcount: A:0.20, C:0.04, G:0.29, T:0.48
Consensus pattern (28 bp):
TATTCTAGTGTGTTTTGGAGGATTATAT
Found at i:36422111 original size:23 final size:23
Alignment explanation
Indices: 36422082--36422167 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
36422072 GCTATACTGA
*
36422082 TCAGGCACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
* *
36422105 TTAGGCACCTTGTGTGTCGTA--
1 TCAGGCACCTTATGTGTCGTATT
**
36422126 TCAGGCACCTCGTGTGTC--ATT
1 TCAGGCACCTTATGTGTCGTATT
36422147 TCAGGCA-CTTATGTGTCGTAT
1 TCAGGCACCTTATGTGTCGTAT
36422168 ACTGATCAGG
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
19 1 0.02
20 8 0.15
21 23 0.44
22 2 0.04
23 18 0.35
ACGTcount: A:0.16, C:0.21, G:0.24, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:36423405 original size:46 final size:48
Alignment explanation
Indices: 36423247--36423433 Score: 163
Period size: 46 Copynumber: 3.9 Consensus size: 48
36423237 TGGTTGGACC
36423247 ATGGCATCA-A-TGTGATATGTGA-TCTGTGTAAGACCATAGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTC-GTGTAAGACCATAGCTGGGCT
* * * * *
36423293 ATGGCATCAGAGATATGTGATTACGTGCTTCCGTATAAGACCATATCTGGGAT
1 ATGGCATCAGAG---TGTGA-TATGTGATT-CGTGTAAGACCATAGCTGGGCT
*
36423346 ATGGCATC--AGTGTGATATGTGATTCGTGTAAGACCATGGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
* * *
36423392 ATGGC-TACGGTGTGTGATATGTGACTAT-GTGCAAGACCATAG
1 ATGGCAT-CAGAGTGTGATATGTGA-T-TCGTGTAAGACCATAG
36423434 TTTTACTATG
Statistics
Matches: 114, Mismatches: 14, Indels: 23
0.75 0.09 0.15
Matches are distributed among these distances:
45 1 0.01
46 33 0.29
47 8 0.07
48 18 0.16
49 13 0.11
50 1 0.01
51 7 0.06
52 5 0.04
53 27 0.24
54 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (48 bp):
ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
Found at i:36431801 original size:48 final size:48
Alignment explanation
Indices: 36431676--36431801 Score: 189
Period size: 48 Copynumber: 2.6 Consensus size: 48
36431666 TGAGATCCCA
* * *
36431676 TGTAAGACCATGTCTGGGACATGGCATCGAAGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATGTGCGCCAG
* * *
36431724 TGTAAGACCATGTCTGGGACTTGGCATCGGTGATGATATGTGCGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATGTGCGCCAG
*
36431772 TGTAAGACCATGTTTGGGACATGGCATCGG
1 TGTAAGACCATGTCTGGGACATGGCATCGG
36431802 CACCGATATG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 70 1.00
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGAGATGATATGTGCGCCAG
Found at i:36435759 original size:16 final size:17
Alignment explanation
Indices: 36435740--36435784 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
36435730 AAAAAAAAGT
*
36435740 GAAAATGAAAAAT-AAA
1 GAAAAAGAAAAATGAAA
36435756 GAAAAAG-AAAATGAAA
1 GAAAAAGAAAAATGAAA
36435772 GAGAAAAGAAAAA
1 GA-AAAAGAAAAA
36435785 GAGTTGTGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 5 0.20
16 11 0.44
17 5 0.20
18 4 0.16
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.07
Consensus pattern (17 bp):
GAAAAAGAAAAATGAAA
Found at i:36435768 original size:22 final size:23
Alignment explanation
Indices: 36435740--36435786 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
36435730 AAAAAAAAGT
36435740 GAAAATGAAA-A-ATAAAGAAAAA
1 GAAAATGAAAGAGA-AAAGAAAAA
36435762 GAAAATGAAAGAGAAAAGAAAAA
1 GAAAATGAAAGAGAAAAGAAAAA
36435785 GA
1 GA
36435787 GTTGTGATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 10 0.43
23 12 0.52
24 1 0.04
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.06
Consensus pattern (23 bp):
GAAAATGAAAGAGAAAAGAAAAA
Found at i:36436894 original size:10 final size:10
Alignment explanation
Indices: 36436879--36436923 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
36436869 AACTCACTTG
36436879 AGCTCGTTTC
1 AGCTCGTTTC
*
36436889 AGCTCGTTTG
1 AGCTCGTTTC
* *
36436899 AGCTTGATTTT
1 AGCTCG-TTTC
36436910 AGCTCGTTTC
1 AGCTCGTTTC
36436920 AGCT
1 AGCT
36436924 TATTCCTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
10 21 0.72
11 8 0.28
ACGTcount: A:0.13, C:0.22, G:0.22, T:0.42
Consensus pattern (10 bp):
AGCTCGTTTC
Found at i:36436915 original size:21 final size:20
Alignment explanation
Indices: 36436876--36436924 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
36436866 ATCAACTCAC
*
36436876 TTGAGCTCGTTTCAGCTCGT
1 TTGAGCTTGTTTCAGCTCGT
*
36436896 TTGAGCTTGATTTTAGCTCGT
1 TTGAGCTTG-TTTCAGCTCGT
*
36436917 TTCAGCTT
1 TTGAGCTT
36436925 ATTCCTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.12, C:0.20, G:0.22, T:0.45
Consensus pattern (20 bp):
TTGAGCTTGTTTCAGCTCGT
Found at i:36443944 original size:94 final size:94
Alignment explanation
Indices: 36443752--36443963 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 94
36443742 TATGTGTGCT
* *
36443752 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATCATGAGAGCCAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACATCACGAGAGCCAGTGTAAGACATGTCTGGG
** *
36443817 ACATGCATTGGCCTCGAGATATTTAAACC
66 ACATGCATTGGCCTCGAGATATACAAACA
* * * *
36443846 AGTGTAAGACATGTTTGGGACATGCATC-GGCA-TTGAGACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCACAT--CACGAGAGCCAGTGTAAGACATGTCTG
* ** *
36443909 GGACATGCATCT-GCCTTGCTATATACAAGCA
64 GGACATGCAT-TGGCCTCGAGATATACAAACA
* *
36443940 AGTGTAAGACCTGTTTAGGACATG
1 AGTGTAAGACATGTTTGGGACATG
36443964 GCGTCAGCTT
Statistics
Matches: 100, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
92 1 0.01
93 3 0.03
94 95 0.95
95 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (94 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCACATCACGAGAGCCAGTGTAAGACATGTCTGGG
ACATGCATTGGCCTCGAGATATACAAACA
Found at i:36444040 original size:49 final size:48
Alignment explanation
Indices: 36443752--36444108 Score: 183
Period size: 46 Copynumber: 7.5 Consensus size: 48
36443742 TATGTGTGCT
* * *
36443752 AGTGTAAGACATGTCTGGGACAT-GCATC-AGCCA-C-ATCATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCATCTA-GATGAAAGCC
* * * * *
36443798 AGTGTAAGACATGTCTGGGACAT-GCATTGGCC-TCGAGAT-ATTTAAACC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCATCTAGATGA---AAGCC
* * * * * *
36443846 AGTGTAAGACATGTTTGGGACAT-GCATCG-GCAT-TGAGACGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCATCT-AGATGAAAGCC
* * * *
36443892 AGTGTAAGACATGTCTGGGACAT-GCATCTG-CCTTGCTATAT-ACAAGCA
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACCAT-CTAGATGA-AAGCC
* * * * * * * * *
36443940 AGTGTAAGACCTGTTTAGGACATGGCGTC-AGCTTGT-TATG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCATCTAGATGAAAGCC
* *
36443984 AGTGTAAGACCTGCCTGGGACATGGCATCGACACCAT-TAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCG--ACCATCTAGATGAAAGCC
* * *
36444033 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTTGCTATATGAAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCAT-CTAGATGAAAGCC
36444082 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
36444109 GTCAGCATCT
Statistics
Matches: 243, Mismatches: 43, Indels: 46
0.73 0.13 0.14
Matches are distributed among these distances:
44 26 0.11
45 1 0.00
46 65 0.27
47 16 0.07
48 62 0.26
49 58 0.24
50 15 0.06
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCATCTAGATGAAAGCC
Found at i:36453243 original size:42 final size:44
Alignment explanation
Indices: 36453153--36453275 Score: 130
Period size: 43 Copynumber: 2.9 Consensus size: 44
36453143 GGGATGTTGG
36453153 CATCGACT-TATGATTTACATGTAAGACCATGTCTGGGAAATCGA
1 CATCGA-TATATGATTTACATGTAAGACCATGTCTGGGAAATCGA
* * * * *
36453197 CATCG-TATATGATTT-CGTGTAAGACCCTGTTTGGGGCAAT-GG
1 CATCGATATATGATTTACATGTAAGACCATGTCT-GGGAAATCGA
* *
36453239 CATCGATATTTG-TTTACATGTAAGACCACGTCTGGGA
1 CATCGATATATGATTTACATGTAAGACCATGTCTGGGA
36453276 CGTTGGCTTT
Statistics
Matches: 64, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
42 27 0.42
43 32 0.50
44 5 0.08
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (44 bp):
CATCGATATATGATTTACATGTAAGACCATGTCTGGGAAATCGA
Found at i:36459376 original size:41 final size:41
Alignment explanation
Indices: 36459319--36459403 Score: 127
Period size: 41 Copynumber: 2.1 Consensus size: 41
36459309 AGCCTAGACC
36459319 GTGTGGCCCAGAACATGGTCGTGTGGCTACTTT-ACATGCCT
1 GTGTGGCCCAGAACATGGTCGTGTGGCTA-TTTCACATGCCT
* * *
36459360 GTGTGGCCTAGAACATGGTCGTGTTGCTATTTCACATGCTT
1 GTGTGGCCCAGAACATGGTCGTGTGGCTATTTCACATGCCT
36459401 GTG
1 GTG
36459404 GATGTAGACC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 3 0.08
41 37 0.93
ACGTcount: A:0.16, C:0.21, G:0.29, T:0.33
Consensus pattern (41 bp):
GTGTGGCCCAGAACATGGTCGTGTGGCTATTTCACATGCCT
Found at i:36459383 original size:20 final size:20
Alignment explanation
Indices: 36459318--36459383 Score: 55
Period size: 20 Copynumber: 3.2 Consensus size: 20
36459308 TAGCCTAGAC
*
36459318 CGTGTGGCCCAGAACATGGT
1 CGTGTGGCCTAGAACATGGT
** *
36459338 CGTGTGG-CTACTTTACAT-GC
1 CGTGTGGCCTA--GAACATGGT
36459358 CTGTGTGGCCTAGAACATGGT
1 C-GTGTGGCCTAGAACATGGT
36459379 CGTGT
1 CGTGT
36459384 TGCTATTTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 10
0.67 0.14 0.20
Matches are distributed among these distances:
19 2 0.06
20 17 0.50
21 12 0.35
22 3 0.09
ACGTcount: A:0.17, C:0.23, G:0.32, T:0.29
Consensus pattern (20 bp):
CGTGTGGCCTAGAACATGGT
Found at i:36470324 original size:46 final size:46
Alignment explanation
Indices: 36470270--36470445 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
36470260 TGGTTGAGCA
*
36470270 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * * *
36470316 TCCAAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
*
36470361 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
36470409 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
36470446 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 62 0.58
47 28 0.26
48 4 0.04
50 4 0.04
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:36470426 original size:93 final size:93
Alignment explanation
Indices: 36470267--36470437 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
36470257 GGATGGTTGA
*
36470267 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCATTGAGT
36470332 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
36470360 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCATTGAGT
36470425 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
36470438 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:36472202 original size:27 final size:27
Alignment explanation
Indices: 36472168--36472367 Score: 274
Period size: 27 Copynumber: 7.4 Consensus size: 27
36472158 TGGATAAGTT
*
36472168 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
36472195 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
36472222 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
36472249 GTAGAATTACCGAAATACGCCTGTATG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
36472276 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
36472303 GTAGAAATACCGAAATACCCCTGTAGA
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
36472330 GTAGAATTACCGAGATACCCTTCTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
36472357 GTAAAATTACC
1 GTAGAATTACC
36472368 ATTTTTCCCC
Statistics
Matches: 151, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 151 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:36477594 original size:42 final size:42
Alignment explanation
Indices: 36477533--36477645 Score: 181
Period size: 42 Copynumber: 2.7 Consensus size: 42
36477523 ATGTCGGTGC
*
36477533 CAATGCCATATCCTAGACATGGTCTTACACGAGACCTCATAT
1 CAATGCCATATCCCAGACATGGTCTTACACGAGACCTCATAT
** *
36477575 TGATGCCATGTCCCAGACATGGTCTTACACGAGACCTCATAT
1 CAATGCCATATCCCAGACATGGTCTTACACGAGACCTCATAT
*
36477617 CAATGCCATATCCCAGATATGGTCTTACA
1 CAATGCCATATCCCAGACATGGTCTTACA
36477646 TAAAATCACA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (42 bp):
CAATGCCATATCCCAGACATGGTCTTACACGAGACCTCATAT
Found at i:36477704 original size:48 final size:49
Alignment explanation
Indices: 36477619--36477743 Score: 146
Period size: 48 Copynumber: 2.6 Consensus size: 49
36477609 CCTCATATCA
* *
36477619 ATGCCATATCCCAGATATGGTCTTACA-TAAAATCACATACCGATGCCG
1 ATGCCATATCCCAGATATGGTCTTACACTAAAATCACATACCAACGCCG
* *** * *
36477667 ATGCCATATCCCATATATGGTCTTACACTTGCA-CACATATCAACGTCG
1 ATGCCATATCCCAGATATGGTCTTACACTAAAATCACATACCAACGCCG
* *
36477715 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATATCCCAGATATGGTCTTACACT
36477744 GGCTCTCATC
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 63 0.97
49 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (49 bp):
ATGCCATATCCCAGATATGGTCTTACACTAAAATCACATACCAACGCCG
Found at i:36480394 original size:319 final size:319
Alignment explanation
Indices: 36479813--36480456 Score: 991
Period size: 319 Copynumber: 2.0 Consensus size: 319
36479803 GATGAAAGGT
* *
36479813 GGTACTAAAATTCAATCTCGTGCCTAAGGCTTCTTGCAACTTTTTCTAAAACTGAGAGGTAAACC
1 GGTACTAAAATTCAATCTCGTGCCCAAGGCTTCTTGCAACTTTTTCCAAAACTGAGAGGTAAACC
* * * * *
36479878 TCAGATCTCTATCCGATATGATCGATAAGGGTATTTCGTGAAGTGTCACAATTTCAAAAATATAT
66 TCAGATCTCTATACGATATAATCGATAAAGGTATTCCGTGAAGTCTCACAATTTCAAAAATATAT
* * * * ** *
36479943 AACTCAGCCAATTTATCAATCGAATAGTCGGTATGTACAGAGATAAATTGAGCTGATTTTGTCAA
131 AACTCAGCCAATTTATCAAGCGAATAGTCAGTACGTACAGAGATAAAGTGAGCCAACTTTGTCAA
* * *
36480008 TCGATCAACCACGACCCACACCGCATCTTTCTTACTTAGTGTCAAATGTAAACCCATTACAAATT
196 TCGATCAACCACGACCCACACCGCATCTTTCTTAATCAGTGTCAAAGGTAAACCCATTACAAATT
* *
36480073 TCATGGTAATTCGGTCCCATTTCCACTCGGGAACCATGATTGGCTGTAGTAATCCTGAA
261 TCATGGTAATTCAGTCCCATTTCCACTCGGGAACCATGATAGGCTGTAGTAATCCTGAA
*
36480132 GGTACTAAAATTCAATCTCGTGCCCAAGGCTTCTTGTAACTTTTTCCAAAACTGAGAGGTAAACC
1 GGTACTAAAATTCAATCTCGTGCCCAAGGCTTCTTGCAACTTTTTCCAAAACTGAGAGGTAAACC
*
36480197 TCAGATCTCTATACGATATAATCGATAAAGGTATTCCGTGAAGTCTCAGAATTTCAAAAATATAT
66 TCAGATCTCTATACGATATAATCGATAAAGGTATTCCGTGAAGTCTCACAATTTCAAAAATATAT
* * * * *
36480262 AACTCTGCCAATTTATCAAGCGAGTAGTTATTACGTACTGAGATAAAGTGAGCCAACTTTGTCAA
131 AACTCAGCCAATTTATCAAGCGAATAGTCAGTACGTACAGAGATAAAGTGAGCCAACTTTGTCAA
* * * * **
36480327 TCGATCAACTACGACCCACACCGCATCTTTCTTAATCGGTGTCAAAGGTAATCCCGTTATGAATT
196 TCGATCAACCACGACCCACACCGCATCTTTCTTAATCAGTGTCAAAGGTAAACCCATTACAAATT
*
36480392 TCATGGTAATTCAGTCCCATTTTCACTCGGGAACCATGATAGGCTGTAGTAATCCTGAA
261 TCATGGTAATTCAGTCCCATTTCCACTCGGGAACCATGATAGGCTGTAGTAATCCTGAA
36480451 GGTACT
1 GGTACT
36480457 TGGTTCTTAG
Statistics
Matches: 292, Mismatches: 33, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
319 292 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.30
Consensus pattern (319 bp):
GGTACTAAAATTCAATCTCGTGCCCAAGGCTTCTTGCAACTTTTTCCAAAACTGAGAGGTAAACC
TCAGATCTCTATACGATATAATCGATAAAGGTATTCCGTGAAGTCTCACAATTTCAAAAATATAT
AACTCAGCCAATTTATCAAGCGAATAGTCAGTACGTACAGAGATAAAGTGAGCCAACTTTGTCAA
TCGATCAACCACGACCCACACCGCATCTTTCTTAATCAGTGTCAAAGGTAAACCCATTACAAATT
TCATGGTAATTCAGTCCCATTTCCACTCGGGAACCATGATAGGCTGTAGTAATCCTGAA
Found at i:36488373 original size:21 final size:22
Alignment explanation
Indices: 36488340--36488380 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
36488330 TACATACCTG
*
36488340 TACCATACATTCTTATTCATTC
1 TACCATACATTCTTAATCATTC
*
36488362 TACCCTAC-TTCTTAATCAT
1 TACCATACATTCTTAATCAT
36488381 AATCTTGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.44
Consensus pattern (22 bp):
TACCATACATTCTTAATCATTC
Found at i:36488608 original size:42 final size:42
Alignment explanation
Indices: 36488544--36488654 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
36488534 ATGTCGGTGC
* * **
36488544 CAATTCCATGTTCCAGACATGGTCTTAAACGGGACCTCATAT
1 CAATGCCATGTCCCAGACATGGTCTTAAACGAAACCTCATAT
* * *
36488586 CGATGCCATGTCCCAGACATGGTCTTACACGAAATCTCATAT
1 CAATGCCATGTCCCAGACATGGTCTTAAACGAAACCTCATAT
* * *
36488628 CAATGCCATATCCCAAATATGGTCTTA
1 CAATGCCATGTCCCAGACATGGTCTTA
36488655 CATGAAATCA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (42 bp):
CAATGCCATGTCCCAGACATGGTCTTAAACGAAACCTCATAT
Found at i:36488655 original size:42 final size:42
Alignment explanation
Indices: 36488579--36488705 Score: 146
Period size: 42 Copynumber: 2.9 Consensus size: 42
36488569 TAAACGGGAC
* * *
36488579 CTCATATCGATGCCATGTCCCAGACATGGTCTTACACGAAAT
1 CTCATATCGATGCCATATCCCAAATATGGTCTTACACGAAAT
* *
36488621 CTCATATCAATGCCATATCCCAAATATGGTCTTACATGAAAT
1 CTCATATCGATGCCATATCCCAAATATGGTCTTACACGAAAT
*
36488663 CACATACCGATGCCGATGCCATATCCCAAATATGGTCTTACAC
1 CTCAT----AT--CGATGCCATATCCCAAATATGGTCTTACAC
36488706 TCACACACAT
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 41 0.58
46 2 0.03
48 28 0.39
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.27
Consensus pattern (42 bp):
CTCATATCGATGCCATATCCCAAATATGGTCTTACACGAAAT
Found at i:36488730 original size:48 final size:49
Alignment explanation
Indices: 36488627--36488753 Score: 141
Period size: 48 Copynumber: 2.6 Consensus size: 49
36488617 AAATCTCATA
* * *
36488627 TCAATGCCATATCCCAAATATGGTCTTACA-TGAAATCACATACCGATG
1 TCAATGCCATATCCCAAATATGGTCTTACACTCAAATCACATACCAACG
* * * *
36488675 CCGATGCCATATCCCAAATATGGTCTTACACTCACA-CACATATCAACG
1 TCAATGCCATATCCCAAATATGGTCTTACACTCAAATCACATACCAACG
* * * *
36488723 TCAATGCCATGTCTCAGACATGGTCTTACAC
1 TCAATGCCATATCCCAAATATGGTCTTACAC
36488754 AGGATCTCAT
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
48 62 0.95
49 3 0.05
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (49 bp):
TCAATGCCATATCCCAAATATGGTCTTACACTCAAATCACATACCAACG
Found at i:36498028 original size:93 final size:93
Alignment explanation
Indices: 36497915--36498086 Score: 326
Period size: 93 Copynumber: 1.8 Consensus size: 93
36497905 CGCCCATAAG
*
36497915 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36497980 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
36498008 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
36498073 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
36498087 TCAACCATCC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:36498083 original size:46 final size:46
Alignment explanation
Indices: 36497908--36498083 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
36497898 TGTAACCCGC
* *
36497908 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
36497954 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
36498004 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
36498047 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
36498084 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:36503005 original size:22 final size:22
Alignment explanation
Indices: 36502955--36503006 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
36502945 TGGACAAGCC
36502955 ACTACATAATTGTCGATAAACA
1 ACTACATAATTGTCGATAAACA
* *
36502977 ACCACATAATTG-CAGATAAACT
1 ACTACATAATTGTC-GATAAACA
*
36502999 GCTACATA
1 ACTACATA
36503007 TCTTTCCCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.25
Consensus pattern (22 bp):
ACTACATAATTGTCGATAAACA
Found at i:36506759 original size:29 final size:26
Alignment explanation
Indices: 36506710--36506766 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 26
36506700 ACATTGTTCT
36506710 CAGTTTCTTCCATTAAATCTAGTCCTAA
1 CAGTTTCTTCCATTAAATCTA-TCC-AA
36506738 CAGTTTCTTTTCC-TTAAATCTATCCAA
1 CAGTTTC--TTCCATTAAATCTATCCAA
36506765 CA
1 CA
36506767 CAAAGGTGCC
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
27 4 0.15
28 10 0.37
29 9 0.33
30 4 0.15
ACGTcount: A:0.28, C:0.26, G:0.05, T:0.40
Consensus pattern (26 bp):
CAGTTTCTTCCATTAAATCTATCCAA
Found at i:36508279 original size:40 final size:39
Alignment explanation
Indices: 36508235--36508330 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 39
36508225 TTTGGAAAAG
* *
36508235 AAACACCACTATAGATCGAGCATTAATGGCACTTT-TTGAA
1 AAACACCACTATAGAT-GAGAATTAATAGCACTTTCTT-AA
* * **
36508275 AAACATCACTATAGAATGAGAATTAGTAGTGCTTTCTTAA
1 AAACACCACTATAG-ATGAGAATTAATAGCACTTTCTTAA
36508315 AAACACCACTATAGAT
1 AAACACCACTATAGAT
36508331 ATAGTATTAG
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
39 2 0.04
40 41 0.87
41 4 0.09
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.28
Consensus pattern (39 bp):
AAACACCACTATAGATGAGAATTAATAGCACTTTCTTAA
Found at i:36508340 original size:40 final size:40
Alignment explanation
Indices: 36508266--36508358 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 40
36508256 ATTAATGGCA
* * *
36508266 CTTTTTGAAAAACATCACTATAGAATGAGAATTAGTAGTG
1 CTTTTTCAAAAACACCACTATAGAATGAGAATTAGCAGTG
* *
36508306 CTTTCTT-AAAAACACCACTATAGATAT-AGTATTAGCGGTG
1 CTTT-TTCAAAAACACCACTATAGA-ATGAGAATTAGCAGTG
36508346 CTTTTTCAAAAAC
1 CTTTTTCAAAAAC
36508359 GCCGCAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
39 2 0.04
40 40 0.87
41 4 0.09
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (40 bp):
CTTTTTCAAAAACACCACTATAGAATGAGAATTAGCAGTG
Found at i:36508823 original size:13 final size:13
Alignment explanation
Indices: 36508805--36508849 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
36508795 ATTGATTGTT
36508805 TTAAATTTATATA
1 TTAAATTTATATA
* *
36508818 TTAAATATT-TTTT
1 TTAAAT-TTATATA
36508831 TTAAATTTATATA
1 TTAAATTTATATA
36508844 TTAAAT
1 TTAAAT
36508850 ATTTTCTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 2 0.08
13 22 0.85
14 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TTAAATTTATATA
Found at i:36508836 original size:26 final size:26
Alignment explanation
Indices: 36508803--36508854 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
36508793 TGATTGATTG
36508803 TTTTAAATTTATATATTAAATATTTT
1 TTTTAAATTTATATATTAAATATTTT
36508829 TTTTAAATTTATATATTAAATATTTT
1 TTTTAAATTTATATATTAAATATTTT
36508855 CTTATATGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTTAAATTTATATATTAAATATTTT
Found at i:36508929 original size:14 final size:14
Alignment explanation
Indices: 36508910--36508937 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36508900 TTAATTATCA
36508910 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
36508924 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
36508938 ATATGATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:36510047 original size:31 final size:31
Alignment explanation
Indices: 36510009--36510069 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
36509999 TTTTCATAAT
*
36510009 TCATATTTCATAACACTGGGTCGAAGCCTTC
1 TCATATTTCATAACACTGGGCCGAAGCCTTC
**
36510040 TCATATTTCATATTACTGGGCCGAAGCCTT
1 TCATATTTCATAACACTGGGCCGAAGCCTT
36510070 TACTGTAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (31 bp):
TCATATTTCATAACACTGGGCCGAAGCCTTC
Found at i:36510328 original size:24 final size:24
Alignment explanation
Indices: 36510264--36510357 Score: 131
Period size: 23 Copynumber: 4.0 Consensus size: 24
36510254 GCTTTATCAT
*
36510264 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
36510289 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
36510312 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
36510335 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
36510358 GCACTTCCTC
Statistics
Matches: 64, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
23 40 0.62
24 16 0.25
25 8 0.12
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:36510432 original size:20 final size:20
Alignment explanation
Indices: 36510407--36510473 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
36510397 TTATGAATAC
36510407 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
36510427 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
36510447 GTCATGTGCATATCATGCAT
1 ATCATGTGCATATCATACAT
*
36510467 ACCATGT
1 ATCATGT
36510474 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:36510438 original size:11 final size:11
Alignment explanation
Indices: 36510407--36510463 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
36510397 TTATGAATAC
36510407 ATCATGTGCAT
1 ATCATGTGCAT
*
36510418 ATCA--TACAT
1 ATCATGTGCAT
36510427 ATCATGTGCAT
1 ATCATGTGCAT
*
36510438 ATCA--TACAT
1 ATCATGTGCAT
*
36510447 GTCATGTGCAT
1 ATCATGTGCAT
36510458 ATCATG
1 ATCATG
36510464 CATACCATGT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:36513799 original size:40 final size:40
Alignment explanation
Indices: 36513722--36513956 Score: 335
Period size: 40 Copynumber: 5.8 Consensus size: 40
36513712 CCAGCATGAT
* * *
36513722 TGCTCTTCGGGACCCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGA-CTTAGCCCGGATATATCACTAGCACGAA
** * *
36513763 TGCTCTTCGGGGTTTAGCACGGATATATCTCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
36513803 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
36513843 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
36513883 CGTGCTCTTCGGGACTTATCCCGGATATATCACTAGCACGAA
1 --TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36513925 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
36513957 CTCAATTCTC
Statistics
Matches: 171, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
40 122 0.71
41 11 0.06
42 38 0.22
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:36513913 original size:122 final size:121
Alignment explanation
Indices: 36513722--36513956 Score: 337
Period size: 122 Copynumber: 1.9 Consensus size: 121
36513712 CCAGCATGAT
**
36513722 TGCTCTTCGGGACCCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGAT
1 TGCTCTTCGGGACCCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCACGGAT
* *
36513787 ATATCTCTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
66 ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
** * * * *
36513843 TGCTCTTCGGGA-TTTAGCCCGGATATATCACTAGCACGAACGTGCTCTTCGGGACTTATCCCGG
1 TGCTCTTCGGGACCCTAGCCCGGATATAACACCAGCACGAA--TGCTCTTCGGGACTTAGCACGG
* *
36513907 ATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
64 ATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACT
36513957 CTCAATTCTC
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
120 24 0.24
121 12 0.12
122 64 0.64
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (121 bp):
TGCTCTTCGGGACCCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGACTTAGCACGGAT
ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:36513933 original size:82 final size:80
Alignment explanation
Indices: 36513722--36513956 Score: 337
Period size: 82 Copynumber: 2.9 Consensus size: 80
36513712 CCAGCATGAT
* * * * * *
36513722 TGCTCTTCGGGACCCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGAT
1 TGCTCTTCGGGA-CTTATCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGAT
*
36513787 ATATCTCTAGCACGAA
65 ATATCACTAGCACGAA
* *
36513803 TGCTCTTCGGAACTTAGT-CCGGATACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGAT
1 TGCTCTTCGGGACTTA-TCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGAT
36513867 ATATCACTAGCACGAA
65 ATATCACTAGCACGAA
*
36513883 CGTGCTCTTCGGGACTTATCCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGA
1 --TGCTCTTCGGGACTTATCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGA
36513948 TATATCACT
64 TATATCACT
36513957 CTCAATTCTC
Statistics
Matches: 138, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
80 59 0.43
81 12 0.09
82 67 0.49
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (80 bp):
TGCTCTTCGGGACTTATCCCGGATATATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGATA
TATCACTAGCACGAA
Found at i:36515221 original size:37 final size:37
Alignment explanation
Indices: 36515171--36515249 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36515161 TTATTACGAA
* * *
36515171 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
36515208 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
36515245 GTCTT
1 GTCTT
36515250 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:36515446 original size:47 final size:47
Alignment explanation
Indices: 36515368--36515929 Score: 928
Period size: 47 Copynumber: 11.7 Consensus size: 47
36515358 CCCTTCGGGA
* * * * * *
36515368 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36515415 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515462 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515509 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515558 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515605 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515652 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
36515701 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515750 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515799 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515848 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36515895 CTTATCACATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
36515930 AGAATCCTAA
Statistics
Matches: 496, Mismatches: 12, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
46 1 0.00
47 262 0.53
49 227 0.46
51 6 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36515542 original size:49 final size:49
Alignment explanation
Indices: 36515368--36515908 Score: 926
Period size: 49 Copynumber: 11.3 Consensus size: 49
36515358 CCCTTCGGGA
* * * * *
36515368 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36515415 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515462 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515509 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515558 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515605 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
36515652 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515701 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515750 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515799 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515848 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36515895 CTTATCACATATAT
1 CTTATCACATATAT
36515909 GCATGTTCAC
Statistics
Matches: 475, Mismatches: 11, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
46 1 0.00
47 231 0.49
49 243 0.51
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36515565 original size:96 final size:96
Alignment explanation
Indices: 36515368--36515908 Score: 946
Period size: 96 Copynumber: 5.6 Consensus size: 96
36515358 CCCTTCGGGA
* * * * * * * *
36515368 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
36515431 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36515462 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
36515527 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36515558 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
36515621 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
36515652 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
36515717 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
36515750 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
36515815 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
36515848 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
36515909 GCATGTTCAC
Statistics
Matches: 431, Mismatches: 8, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
94 100 0.23
96 188 0.44
98 137 0.32
100 6 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36519820 original size:40 final size:40
Alignment explanation
Indices: 36519788--36520019 Score: 356
Period size: 40 Copynumber: 5.8 Consensus size: 40
36519778 CCAGCATGAT
* * *
36519788 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** * *
36519828 TGCTCTTCGGGGTTTAGCACGGATATATCTCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
36519868 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
36519908 TGCTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
36519948 TGCTCTTCGGGACTTATCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
36519988 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
36520020 CTCAATTCTC
Statistics
Matches: 171, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 171 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:36521284 original size:37 final size:37
Alignment explanation
Indices: 36521234--36521312 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36521224 TTATTACGAA
* * *
36521234 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
36521271 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
36521308 GTCTT
1 GTCTT
36521313 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:36521606 original size:49 final size:47
Alignment explanation
Indices: 36521433--36521991 Score: 940
Period size: 47 Copynumber: 11.7 Consensus size: 47
36521423 CTTCGGGACT
* * * * * *
36521433 TTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
36521480 CTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
36521527 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
36521574 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
36521623 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
36521670 TTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCC
36521719 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
36521768 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
36521815 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
36521864 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
36521911 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
36521958 TTATCACATATATGCA-TGTTCACATCCATCACAT
1 TTATCACATATATACACT-TTCACATTCATCACAT
36521992 AGAATCCTAA
Statistics
Matches: 491, Mismatches: 12, Indels: 18
0.94 0.02 0.03
Matches are distributed among these distances:
46 1 0.00
47 308 0.63
49 176 0.36
51 6 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:36521628 original size:96 final size:94
Alignment explanation
Indices: 36521433--36521991 Score: 940
Period size: 96 Copynumber: 5.9 Consensus size: 94
36521423 CTTCGGGACT
* * * * * * * *
36521433 TTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACT
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
36521498 TTCACATTCATCACATCGGCCATTAGGCC
66 TTCACATTCATCACATCGGCCATTAGGCC
36521527 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACA
36521592 CTTTCACATTCATCACATCGGCCATTAGGCC
64 CTTTCACATTCATCACATCGGCCATTAGGCC
36521623 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--ACA
36521688 CTTTCACATTCATCACATCGGCCATTAGGCC
64 CTTTCACATTCATCACATCGGCCATTAGGCC
36521719 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
36521784 CTTTCACATTCATCACATCGGCCATTAGGCC
64 CTTTCACATTCATCACATCGGCCATTAGGCC
36521815 TTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
36521880 CTTTCACATTCATCACATCGGCCATTAGGCC
64 CTTTCACATTCATCACATCGGCCATTAGGCC
*
36521911 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCA-T
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
*
36521975 GTTCACATCCATCACAT
66 -TTCACATTCATCACAT
36521992 AGAATCCTAA
Statistics
Matches: 448, Mismatches: 10, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
93 1 0.00
94 122 0.27
96 272 0.61
98 53 0.12
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (94 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCC
Found at i:36525076 original size:31 final size:31
Alignment explanation
Indices: 36525038--36525100 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
36525028 CTTTTCATAA
*
36525038 TTCATATTTCATAACACTGGGTCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
**
36525069 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
36525100 T
1 T
36525101 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:36525358 original size:24 final size:23
Alignment explanation
Indices: 36525294--36525364 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 23
36525284 GCTTTATCAT
**
36525294 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGG-GGCAAAGCC-CTTTTA
36525319 ATAACTGGGGCAAAGCCCTTTTA
1 ATAACTGGGGCAAAGCCCTTTTA
*
36525342 ATAATTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCA-AAGCCCTTTT
36525365 GCACTTCCTC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
23 17 0.40
24 17 0.40
25 8 0.19
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (23 bp):
ATAACTGGGGCAAAGCCCTTTTA
Found at i:36525439 original size:20 final size:20
Alignment explanation
Indices: 36525414--36525480 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
36525404 TTATGAATAC
36525414 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
36525434 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
36525454 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
36525474 ACCATGT
1 ATCATGT
36525481 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:36525445 original size:11 final size:11
Alignment explanation
Indices: 36525414--36525469 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
36525404 TTATGAATAC
36525414 ATCATGTGCAT
1 ATCATGTGCAT
*
36525425 ATCA--TACAT
1 ATCATGTGCAT
36525434 ATCATGTGCAT
1 ATCATGTGCAT
*
36525445 ATCA--TACAT
1 ATCATGTGCAT
*
36525454 GTCATGTGCAT
1 ATCATGTGCAT
36525465 ATCAT
1 ATCAT
36525470 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:36525549 original size:25 final size:25
Alignment explanation
Indices: 36525517--36525564 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
36525507 ATACATAAAC
* * *
36525517 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
36525542 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
36525565 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:36527935 original size:482 final size:482
Alignment explanation
Indices: 36527030--36527996 Score: 1916
Period size: 482 Copynumber: 2.0 Consensus size: 482
36527020 TTAATTCATT
36527030 CCTTATCTCCTTAATTCATGGCCAAAATCAAAGTTTAAATTTAATTCAAACTCTCCACTGTTGAG
1 CCTTATCTCCTTAATTCATGGCCAAAATCAAAGTTTAAATTTAATTCAAACTCTCCACTGTTGAG
36527095 CAGCAGTCCACCACTCAGCCGACTCCTCCTGCAGCTGGTAGCGTTTCAATCTCGTACGGTCCTTC
66 CAGCAGTCCACCACTCAGCCGACTCCTCCTGCAGCTGGTAGCGTTTCAATCTCGTACGGTCCTTC
36527160 CCACGCGCATTCAGCAAAAAGAAGCACCCTTTTGCGCATAACGTTGTTCAAACCTAGGACCTCCA
131 CCACGCGCATTCAGCAAAAAGAAGCACCCTTTTGCGCATAACGTTGTTCAAACCTAGGACCTCCA
36527225 AGTTGCACTGGGACACGCATTTGTTTTCAATAATATACCGTCACATTTTATCTTAAAGGTTACCT
196 AGTTGCACTGGGACACGCATTTGTTTTCAATAATATACCGTCACATTTTATCTTAAAGGTTACCT
36527290 GCTGAAGTCTCGTTCATTTTAAAAATATAACATTAAAACATACCTTCACCTAGACTCAAACTCCA
261 GCTGAAGTCTCGTTCATTTTAAAAATATAACATTAAAACATACCTTCACCTAGACTCAAACTCCA
*
36527355 AACCTCCGTCCGCCTTGCGCCCACGCCCGTGGGGCTGGCCACTGCACCAGGCTTCCTTCCTTGCT
326 AACCTCCGTCCGCCTTGCGCCCACGCCCGTGGGGCTGGCCACTACACCAGGCTTCCTTCCTTGCT
36527420 AATATATGGTCACAATAAATTATAAACCTTACCTGCTTCAGTTCTGGCCCACTTTAAAAATAAAA
391 AATATATGGTCACAATAAATTATAAACCTTACCTGCTTCAGTTCTGGCCCACTTTAAAAATAAAA
36527485 CAGGATTCGCTCGCGTATGGAATCGAA
456 CAGGATTCGCTCGCGTATGGAATCGAA
36527512 CCTTATCTCCTTAATTCATGGCCAAAATCAAAGTTTAAATTTAATTCAAACTCTCCACTGTTGAG
1 CCTTATCTCCTTAATTCATGGCCAAAATCAAAGTTTAAATTTAATTCAAACTCTCCACTGTTGAG
36527577 CAGCAGTCCACCACTCAGCCGACTCCTCCTGCAGCTGGTAGCGTTTCAATCTCGTACGGTCCTTC
66 CAGCAGTCCACCACTCAGCCGACTCCTCCTGCAGCTGGTAGCGTTTCAATCTCGTACGGTCCTTC
*
36527642 CCACGCGCATTCAGCAAAAAGAAGCACCCTTTTGCGCATAACGTTGTTCAAATCTAGGACCTCCA
131 CCACGCGCATTCAGCAAAAAGAAGCACCCTTTTGCGCATAACGTTGTTCAAACCTAGGACCTCCA
36527707 AGTTGCACTGGGACACGCATTTGTTTTCAATAATATACCGTCACATTTTATCTTAAAGGTTACCT
196 AGTTGCACTGGGACACGCATTTGTTTTCAATAATATACCGTCACATTTTATCTTAAAGGTTACCT
36527772 GCTGAAGTCTCGTTCATTTTAAAAATATAACATTAAAACATACCTTCACCTAGACTCAAACTCCA
261 GCTGAAGTCTCGTTCATTTTAAAAATATAACATTAAAACATACCTTCACCTAGACTCAAACTCCA
36527837 AACCTCCGTCCGCCTTGCGCCCACGCCCGTGGGGCTGGCCACTACACCAGGCTTCCTTCCTTGCT
326 AACCTCCGTCCGCCTTGCGCCCACGCCCGTGGGGCTGGCCACTACACCAGGCTTCCTTCCTTGCT
36527902 AATATATGGTCACAATAAATTATAAACCTTACCTGCTTCAGTTCTGGCCCACTTTAAAAATAAAA
391 AATATATGGTCACAATAAATTATAAACCTTACCTGCTTCAGTTCTGGCCCACTTTAAAAATAAAA
36527967 CAGGATTCGCTCGCGTATGGAATCGAA
456 CAGGATTCGCTCGCGTATGGAATCGAA
36527994 CCT
1 CCT
36527997 GCGCCCTCTC
Statistics
Matches: 483, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
482 483 1.00
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (482 bp):
CCTTATCTCCTTAATTCATGGCCAAAATCAAAGTTTAAATTTAATTCAAACTCTCCACTGTTGAG
CAGCAGTCCACCACTCAGCCGACTCCTCCTGCAGCTGGTAGCGTTTCAATCTCGTACGGTCCTTC
CCACGCGCATTCAGCAAAAAGAAGCACCCTTTTGCGCATAACGTTGTTCAAACCTAGGACCTCCA
AGTTGCACTGGGACACGCATTTGTTTTCAATAATATACCGTCACATTTTATCTTAAAGGTTACCT
GCTGAAGTCTCGTTCATTTTAAAAATATAACATTAAAACATACCTTCACCTAGACTCAAACTCCA
AACCTCCGTCCGCCTTGCGCCCACGCCCGTGGGGCTGGCCACTACACCAGGCTTCCTTCCTTGCT
AATATATGGTCACAATAAATTATAAACCTTACCTGCTTCAGTTCTGGCCCACTTTAAAAATAAAA
CAGGATTCGCTCGCGTATGGAATCGAA
Found at i:36528490 original size:19 final size:18
Alignment explanation
Indices: 36528453--36528496 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
36528443 ATACTTGCAG
36528453 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
36528470 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
36528489 TACTAATT
1 TAATAATT
36528497 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:36530516 original size:258 final size:257
Alignment explanation
Indices: 36530038--36530555 Score: 910
Period size: 258 Copynumber: 2.0 Consensus size: 257
36530028 CTAAAAAAAA
* *
36530038 TTTCAACTTCATATTCGGATGAAAAATTAGAAAGTTTAAACACATTCATAAACAAATCTATTTAT
1 TTTCAACTTCATATTCAGATGAAAAAATAGAAAGTTTAAACACATTCATAAACAAATCTATTTAT
36530103 TAACTGCATTTTTTGATCAGTTTATTGTAATTAAATTCTGATTTTATCTAATTAAGTTGATATCA
66 TAACTGCATTTTTTGATCAGTTTATTGTAATTAAATTCTGATTTTATCTAATTAAGTTGATATCA
36530168 AGTAGACACTAAAGAAAATATAGATAATATAAAGAAAATTTAAAAACCCCGCAGGGATTATTACT
131 AGTAGACACTAAAGAAAATATAGATAATATAAAGAAAATTTAAAAACCCCGCAGGGATTATTACT
* * *
36530233 AATTTAGTCTAAAGCAAGTTAAGGCAGTAGCAGAAGTCTACGTGGACTGTTCCAATCTGTTG
196 AATTTAGTCTAAAGCAAGTTAAGGCAGCAGCAGAAGTCTACGTGCACAGTTCCAATCTGTTG
36530295 TTTCAACTTCATATTCAGATGAAAAAATAGAAAGTTTAAACACATTCATAAACAAATCTATTTAT
1 TTTCAACTTCATATTCAGATGAAAAAATAGAAAGTTTAAACACATTCATAAACAAATCTATTTAT
* * * *
36530360 TAACTTCATTTTTTGATCAGTTTATTGTAATTGAATTCTGAATTTTTTTTAATTAAGTTGATATC
66 TAACTGCATTTTTTGATCAGTTTATTGTAATTAAATTCTG-ATTTTATCTAATTAAGTTGATATC
* * *
36530425 AAGTAGACACTAAAGAGAATGTAGATAATATAAAGCAAATTTAAAAACCCCGCAGGGATTATTAC
130 AAGTAGACACTAAAGAAAATATAGATAATATAAAGAAAATTTAAAAACCCCGCAGGGATTATTAC
*
36530490 TAATTTAGTCTAAAGCAAGTTAAGGCAGCAGCAGAAGTCTACGTGCACAGTTCCAATTTGTTG
195 TAATTTAGTCTAAAGCAAGTTAAGGCAGCAGCAGAAGTCTACGTGCACAGTTCCAATCTGTTG
36530553 TTT
1 TTT
36530556 TTTTGTTTGC
Statistics
Matches: 247, Mismatches: 13, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
257 101 0.41
258 146 0.59
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (257 bp):
TTTCAACTTCATATTCAGATGAAAAAATAGAAAGTTTAAACACATTCATAAACAAATCTATTTAT
TAACTGCATTTTTTGATCAGTTTATTGTAATTAAATTCTGATTTTATCTAATTAAGTTGATATCA
AGTAGACACTAAAGAAAATATAGATAATATAAAGAAAATTTAAAAACCCCGCAGGGATTATTACT
AATTTAGTCTAAAGCAAGTTAAGGCAGCAGCAGAAGTCTACGTGCACAGTTCCAATCTGTTG
Found at i:36531648 original size:26 final size:26
Alignment explanation
Indices: 36531586--36531639 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
36531576 TATTATGAAA
36531586 TTTAA-AT-AAAATAAAATAATATTT
1 TTTAATATAAAAATAAAATAATATTT
*
36531610 TTTAATATAAAAATAAAATTACTATTT
1 TTTAATATAAAAATAAAA-TAATATTT
36531637 TTT
1 TTT
36531640 TTCAAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 2 0.08
26 9 0.35
27 10 0.38
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (26 bp):
TTTAATATAAAAATAAAATAATATTT
Found at i:36532069 original size:9 final size:9
Alignment explanation
Indices: 36532057--36532219 Score: 108
Period size: 9 Copynumber: 18.1 Consensus size: 9
36532047 TATATCATAT
36532057 CATAACTTA
1 CATAACTTA
36532066 CATAACTTA
1 CATAACTTA
*
36532075 CAAAACTTA
1 CATAACTTA
36532084 CATAA--TA
1 CATAACTTA
*
36532091 CATAAATATATA
1 CAT-AA-CT-TA
36532103 TCATAACTTA
1 -CATAACTTA
36532113 CATAACTTA
1 CATAACTTA
36532122 CATAA--TA
1 CATAACTTA
*
36532129 CATAA-ATA
1 CATAACTTA
* *
36532137 TAT-ATTATA
1 CATAACT-TA
36532146 TCATAACTTA
1 -CATAACTTA
36532156 CATAACTTA
1 CATAACTTA
*
36532165 CATAAATGT-
1 CATAACT-TA
* *
36532174 -ATATCATA
1 CATAACTTA
36532182 TCATAACTTA
1 -CATAACTTA
36532192 CATAACTTA
1 CATAACTTA
*
36532201 CAAAACTTA
1 CATAACTTA
*
36532210 CTTAACTTA
1 CATAACTTA
36532219 C
1 C
36532220 GTAATACAAA
Statistics
Matches: 123, Mismatches: 16, Indels: 30
0.73 0.09 0.18
Matches are distributed among these distances:
7 14 0.11
8 9 0.07
9 77 0.63
10 13 0.11
11 3 0.02
12 4 0.03
13 3 0.02
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.34
Consensus pattern (9 bp):
CATAACTTA
Found at i:36532160 original size:43 final size:38
Alignment explanation
Indices: 36532066--36532202 Score: 172
Period size: 36 Copynumber: 3.5 Consensus size: 38
36532056 TCATAACTTA
*
36532066 CATAACTTACAAAACTTACATAATACATAAATATATAT
1 CATAACTTACATAACTTACATAATACATAAATATATAT
36532104 CATAACTTACATAACTTACATAATACATAAATATATATTATAT
1 CATAACTTACATAACTTACATAATACAT--A-A-ATA-TATAT
**
36532147 CATAACTTACATAACTTACAT-A-A-ATGTATATCATAT
1 CATAACTTACATAACTTACATAATACATAAATAT-ATAT
36532183 CATAACTTACATAACTTACA
1 CATAACTTACATAACTTACA
36532203 AAACTTACTT
Statistics
Matches: 90, Mismatches: 3, Indels: 14
0.84 0.03 0.13
Matches are distributed among these distances:
35 1 0.01
36 27 0.30
38 27 0.30
40 3 0.03
41 2 0.02
42 4 0.04
43 26 0.29
ACGTcount: A:0.48, C:0.17, G:0.01, T:0.34
Consensus pattern (38 bp):
CATAACTTACATAACTTACATAATACATAAATATATAT
Found at i:36535899 original size:108 final size:110
Alignment explanation
Indices: 36535675--36535924 Score: 400
Period size: 108 Copynumber: 2.3 Consensus size: 110
36535665 GGTGACGGTT
* *
36535675 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTAATGAGTTATTATAAAGGCAAAGGTCCC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTATAAAGGAAAAGGTCCC
*
36535740 ATGTAAGACCATGTCACAGCATGGCATTGGTGAGTTCATAAGGCA
66 ATGTAAGACCATGCCACAGCATGGCATTGGTGAGTTCATAAGGCA
*
36535785 AA-GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTAT-AAGGAAAAGGTCCC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTATAAAGGAAAAGGTCCC
*
36535848 ATGTAAGACCATGCCA-AGGCATGGCATTGGTGAGTTCATATGG-A
66 ATGTAAGACCATGCCACA-GCATGGCATTGGTGAGTTCATAAGGCA
* *
36535892 AAGGATACCACGTAAGACCATGTCAATACATGG
1 AAGGATACCATGTAAGACCATGTCAAGACATGG
36535925 TAATGGTAAG
Statistics
Matches: 131, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
107 4 0.03
108 80 0.61
109 45 0.34
110 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (110 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTAATGAGTTACTATAAAGGAAAAGGTCCC
ATGTAAGACCATGCCACAGCATGGCATTGGTGAGTTCATAAGGCA
Found at i:36535937 original size:53 final size:54
Alignment explanation
Indices: 36535675--36535938 Score: 304
Period size: 53 Copynumber: 4.9 Consensus size: 54
36535665 GGTGACGGTT
** *
36535675 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTAATGAGTTATTATAAAGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAG-T-TCAT-AAGGCA
*
36535732 AAGG-TCCCATGTAAGACCATGTCACAG-CATGGCATTGGTGAGTTCATAAGGCA
1 AAGGATACCATGTAAGACCATGTCA-AGACATGGCATTGGTGAGTTCATAAGGCA
* *
36535785 AA-GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTT-C-ATAAGGCA
* * * *
36535840 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATATGG-A
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATAAGGCA
* * * * *
36535892 AAGGATACCACGTAAGACCATGTCAATACATGGTAATGGTAAGTTCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTCA
36535939 AAAAGGAAAA
Statistics
Matches: 180, Mismatches: 20, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
52 8 0.04
53 82 0.46
54 5 0.03
55 46 0.26
56 33 0.18
57 6 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGTTCATAAGGCA
Found at i:36546111 original size:49 final size:50
Alignment explanation
Indices: 36546031--36546263 Score: 299
Period size: 49 Copynumber: 4.7 Consensus size: 50
36546021 ATCTATGGTG
*
36546031 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
36546081 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * * * **
36546131 CGATCACGTGTGTAGTACCAAGTGCAGGCTACTACATGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
36546181 AGGTCACGTGTGAAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
36546231 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
36546264 TGCATACTAG
Statistics
Matches: 154, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
49 73 0.47
50 45 0.29
51 36 0.23
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:36546228 original size:101 final size:98
Alignment explanation
Indices: 36546034--36546263 Score: 307
Period size: 100 Copynumber: 2.3 Consensus size: 98
36546024 TATGGTGAGG
* * * *
36546034 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGAAGTACT
* *
36546099 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCGGATAA-TT-GA
* * ** *
36546134 TCACGTGTGTAGTACCAAGTGCAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTGAAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCACATGTGAAGTAC
* *
36546199 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCGGATAATTGA
*
36546233 TCACATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
36546264 TGCATACTAG
Statistics
Matches: 114, Mismatches: 15, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
99 30 0.26
100 43 0.38
101 41 0.36
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCACATGTGAAGTACT
AAGTGCAGGCTACTACGCGTACCGGATAATTGA
Found at i:36555027 original size:27 final size:27
Alignment explanation
Indices: 36554996--36555173 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
36554986 TAAATTGTAC
*
36554996 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
36555023 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
36555049 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
36555077 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
36555104 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
36555132 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
36555159 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36555174 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:36555057 original size:54 final size:55
Alignment explanation
Indices: 36554996--36555173 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 55
36554986 TAAATTGTAC
* **
36554996 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
36555051 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* *
36555104 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
36555159 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36555174 GACTTAATAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:36562715 original size:120 final size:121
Alignment explanation
Indices: 36562497--36562734 Score: 415
Period size: 120 Copynumber: 1.9 Consensus size: 121
36562487 GACTAGCTGA
*
36562497 TCCGTACCGATTTTTCATCGTCTGAGGTAAGTATTTAAGCAATTAAACATCGTCTATTTTGAATG
1 TCCGTACCGATTTTTCATCGTC----GTAAGTAATTAAGCAATTAAACATCGTCTATTTTGAATG
*
36562562 TAAAATAGTTTAATATGATGATTCGAATTTTATAGACTTATAGTAGAGTAGCCGGATGTG
62 TAAAATAGTTTAATATGATGATTCGAATTTTATAAACTTATAGTAGAGTAGCCGGATGTG
36562622 TCCGTACCGATTTTTCATCGTC-TAAGTAATTAAGCAATTAAACATCGTCTATTTTGAATGTAAA
1 TCCGTACCGATTTTTCATCGTCGTAAGTAATTAAGCAATTAAACATCGTCTATTTTGAATGTAAA
36562686 ATAGTTTAATATGATGATTCGAATTTTATAAACTTATAGTAGAGTAGCC
66 ATAGTTTAATATGATGATTCGAATTTTATAAACTTATAGTAGAGTAGCC
36562735 AGATATGGTT
Statistics
Matches: 111, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
120 89 0.80
125 22 0.20
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.38
Consensus pattern (121 bp):
TCCGTACCGATTTTTCATCGTCGTAAGTAATTAAGCAATTAAACATCGTCTATTTTGAATGTAAA
ATAGTTTAATATGATGATTCGAATTTTATAAACTTATAGTAGAGTAGCCGGATGTG
Found at i:36574924 original size:52 final size:52
Alignment explanation
Indices: 36574863--36574962 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
36574853 CTTTACAAAA
* * * *
36574863 CATGAAAATCTATCATTAAACCTTCTTATTTCAACATTAATCATCAAACTTT
1 CATGAAAATCTATCATCAAACCTTCATATTTCAACAGTAAACATCAAACTTT
*
36574915 CATGAAAATCTATCATCAAACTTTCATATTTCAACAGTAAACATCAAA
1 CATGAAAATCTATCATCAAACCTTCATATTTCAACAGTAAACATCAAA
36574963 GAACACATAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.42, C:0.21, G:0.03, T:0.34
Consensus pattern (52 bp):
CATGAAAATCTATCATCAAACCTTCATATTTCAACAGTAAACATCAAACTTT
Found at i:36580514 original size:37 final size:37
Alignment explanation
Indices: 36580482--36580560 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
36580472 TCAGAACTAG
*
36580482 AATCAAAATGAGAATCAGAATCAGGCGACAGAATCAA
1 AATCAAAATCAGAATCAGAATCAGGCGACAGAATCAA
* * * * *
36580519 AATCAAAATCAGTATCAGAATTAGGTGACAAAATCAG
1 AATCAAAATCAGAATCAGAATCAGGCGACAGAATCAA
36580556 AATCA
1 AATCA
36580561 GTATCAGGTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.18
Consensus pattern (37 bp):
AATCAAAATCAGAATCAGAATCAGGCGACAGAATCAA
Found at i:36580550 original size:25 final size:25
Alignment explanation
Indices: 36580522--36580617 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
36580512 GAATCAAAAT
* *
36580522 CAAAATCAGTATCAGAATTAGGTGA
1 CAAAATCAGAATCAGAATCAGGTGA
* *
36580547 CAAAATCAGAATCAGTATCAGGTAA
1 CAAAATCAGAATCAGAATCAGGTGA
* *
36580572 CAGAATCAGAATCAAAATCAGGTGA
1 CAAAATCAGAATCAGAATCAGGTGA
* * *
36580597 TAGAATCAGAATCTGAATCAG
1 CAAAATCAGAATCAGAATCAG
36580618 TATCAGAATT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.21
Consensus pattern (25 bp):
CAAAATCAGAATCAGAATCAGGTGA
Found at i:36580585 original size:31 final size:30
Alignment explanation
Indices: 36580455--36580676 Score: 104
Period size: 31 Copynumber: 7.4 Consensus size: 30
36580445 TAGCCCATTA
* * *
36580455 CAGAATAAGAAACATTATCA-GAACTAGAAT
1 CAGAATCAGAATCAGTATCAGGAAC-AGAAT
* * * *
36580485 CAAAATGAGAATCAGAATCAGGCGACAGAAT
1 CAGAATCAGAATCAGTATCAGG-AACAGAAT
* * * *
36580516 CAAAATCAAAATCAGTATCA-GAATTAG-GT
1 CAGAATCAGAATCAGTATCAGGAA-CAGAAT
*
36580545 GACAAAATCAGAATCAGTATCAGGTAACAGAAT
1 --CAGAATCAGAATCAGTATCAGG-AACAGAAT
* * *
36580578 CAGAATCAAAATCAG-GT---G-ATAGAAT
1 CAGAATCAGAATCAGTATCAGGAACAGAAT
* * *
36580603 CAGAATCTGAATCAGTATCA-GAATTAGGTGAT
1 CAGAATCAGAATCAGTATCAGGAA-CA-G-AAT
*
36580635 -AGAATCAGAATCAATATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGG-AACAGAAT
*
36580665 TAGAATCAGAAT
1 CAGAATCAGAAT
36580677 GTGAATGCAA
Statistics
Matches: 147, Mismatches: 27, Indels: 35
0.70 0.13 0.17
Matches are distributed among these distances:
25 19 0.13
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 23 0.16
31 85 0.58
32 9 0.06
33 5 0.03
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (30 bp):
CAGAATCAGAATCAGTATCAGGAACAGAAT
Found at i:36580592 original size:87 final size:87
Alignment explanation
Indices: 36580492--36580672 Score: 272
Period size: 87 Copynumber: 2.1 Consensus size: 87
36580482 AATCAAAATG
*
36580492 AGAATCAGAATCAGGCGACAGAATCAAAATCAAAATCAGTATCAGAATTAGGTGACAAAATCAGA
1 AGAATCAAAATCAGGCGACAGAATCAAAATCAAAATCAGTATCAGAATTAGGTGACAAAATCAGA
*
36580557 ATCAGTATCAGGTAACAGAATC
66 ATCAATATCAGGTAACAGAATC
* * * ** * *
36580579 AGAATCAAAATCAGGTGATAGAATCAGAATCTGAATCAGTATCAGAATTAGGTGATAGAATCAGA
1 AGAATCAAAATCAGGCGACAGAATCAAAATCAAAATCAGTATCAGAATTAGGTGACAAAATCAGA
*
36580644 ATCAATATCAGGTAACAGAATT
66 ATCAATATCAGGTAACAGAATC
36580666 AGAATCA
1 AGAATCA
36580673 GAATGTGAAT
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21
Consensus pattern (87 bp):
AGAATCAAAATCAGGCGACAGAATCAAAATCAAAATCAGTATCAGAATTAGGTGACAAAATCAGA
ATCAATATCAGGTAACAGAATC
Found at i:36580615 original size:37 final size:37
Alignment explanation
Indices: 36580574--36580646 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
36580564 TCAGGTAACA
36580574 GAATCAGAATCAAAATCAGGTGATAGAATCAGAATCT
1 GAATCAGAATCAAAATCAGGTGATAGAATCAGAATCT
* * *
36580611 GAATCAGTATCAGAATTAGGTGATAGAATCAGAATC
1 GAATCAGAATCAAAATCAGGTGATAGAATCAGAATC
36580647 AATATCAGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.23
Consensus pattern (37 bp):
GAATCAGAATCAAAATCAGGTGATAGAATCAGAATCT
Done.