Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 113 of 325
Found at i:36580654 original size:37 final size:37
Alignment explanation
Indices: 36580575--36580667 Score: 116
Period size: 37 Copynumber: 2.5 Consensus size: 37
36580565 CAGGTAACAG
* * * *
36580575 AATCAGAATCAAAATCAGGTGATAGAATCAGAATCTG
1 AATCAGTATCAGAATTAGGTGATAGAATCAGAATCTA
36580612 AATCAGTATCAGAATTAGGTGATAGAATCAGAATC-A
1 AATCAGTATCAGAATTAGGTGATAGAATCAGAATCTA
*
36580648 ATATCAGGTAACAGAATTAG
1 A-ATCA-GTATCAGAATTAG
36580668 AATCAGAATG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.02
37 36 0.73
38 12 0.24
ACGTcount: A:0.45, C:0.12, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCAGTATCAGAATTAGGTGATAGAATCAGAATCTA
Found at i:36580656 original size:25 final size:25
Alignment explanation
Indices: 36580611--36580676 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
36580601 ATCAGAATCT
* * * *
36580611 GAATCAGTATCAGAATTAGGTGATA
1 GAATCAGAATCAGAATCAGGTAACA
36580636 GAATCAGAATCA-ATATCAGGTAACA
1 GAATCAGAATCAGA-ATCAGGTAACA
*
36580661 GAATTAGAATCAGAAT
1 GAATCAGAATCAGAAT
36580677 GTGAATGCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
24 1 0.03
25 32 0.94
26 1 0.03
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.24
Consensus pattern (25 bp):
GAATCAGAATCAGAATCAGGTAACA
Found at i:36580842 original size:27 final size:26
Alignment explanation
Indices: 36580794--36580901 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
36580784 AACATGGCTG
* * *
36580794 CCAAAATAGATATTGTGACAGAGTCA
1 CCAAAACAGATATTGTGGCAGAGCCA
* *
36580820 CCAGATACAGATACTGTGGCAGAGCCA
1 CCA-AAACAGATATTGTGGCAGAGCCA
*
36580847 CCAAAACAGATATTTGTGGCATAGCCA
1 CCAAAACAGATA-TTGTGGCAGAGCCA
* * *
36580874 CCAAAAATAGATAATGTGGCAAAGCCA
1 CC-AAAACAGATATTGTGGCAGAGCCA
36580901 C
1 C
36580902 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
26 11 0.16
27 48 0.71
28 9 0.13
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.19
Consensus pattern (26 bp):
CCAAAACAGATATTGTGGCAGAGCCA
Found at i:36581562 original size:27 final size:26
Alignment explanation
Indices: 36581512--36581590 Score: 95
Period size: 27 Copynumber: 3.0 Consensus size: 26
36581502 GGGGCAAAAT
* * *
36581512 GGTAATTTTACCCCACAAGAGTATCTC
1 GGTAATTCTACCCTACAAGGGTAT-TC
*
36581539 GGTAATTCTACCCTACAGGGGTATTC
1 GGTAATTCTACCCTACAAGGGTATTC
*
36581565 TGGTATTTCTACCCTACAAGGGTATT
1 -GGTAATTCTACCCTACAAGGGTATT
36581591 TTAGTAACTC
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.04
27 43 0.96
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (26 bp):
GGTAATTCTACCCTACAAGGGTATTC
Found at i:36581569 original size:54 final size:54
Alignment explanation
Indices: 36581511--36581617 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
36581501 AGGGGCAAAA
* *
36581511 TGGTAATTT-TACCCCACAAGAGTATCTCGGTAATTCTACCCTACAGGGGTATTC
1 TGGT-ATTTCTACCCCACAAGAGTATCTCAGTAACTCTACCCTACAGGGGTATTC
* * * * **
36581565 TGGTATTTCTACCCTACAAGGGTATTTTAGTAACTCTACTTTACAGGGGTATT
1 TGGTATTTCTACCCCACAAGAGTATCTCAGTAACTCTACCCTACAGGGGTATT
36581618 TTAATAATTT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
TGGTATTTCTACCCCACAAGAGTATCTCAGTAACTCTACCCTACAGGGGTATTC
Found at i:36581602 original size:27 final size:27
Alignment explanation
Indices: 36581540--36581626 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
36581530 GAGTATCTCG
* *
36581540 GTAATTCTACCCTACAGGGGTATTCTG
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
36581567 GTATTTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* **
36581594 GTAACTCTACTTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
*
36581621 ATAATT
1 GTAATT
36581627 TTTCAAATCG
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTA
Found at i:36581652 original size:27 final size:27
Alignment explanation
Indices: 36581622--36581696 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
36581612 GGTATTTTAA
36581622 TAATTTTTCAAATCGAGGGTAAAACGG
1 TAATTTTTCAAATCGAGGGTAAAACGG
* ****
36581649 TAATTCTGT-AAATCGAGGGTACTTTGG
1 TAATT-TTTCAAATCGAGGGTAAAACGG
* *
36581676 TAATTTTACAAGTCGAGGGTA
1 TAATTTTTCAAATCGAGGGTA
36581697 TTTCAGTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
26 1 0.03
27 35 0.92
28 2 0.05
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (27 bp):
TAATTTTTCAAATCGAGGGTAAAACGG
Found at i:36585055 original size:15 final size:15
Alignment explanation
Indices: 36585029--36585066 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
36585019 CCCATGCTCA
36585029 AGGCCC-AAACTTCT
1 AGGCCCAAAACTTCT
36585043 AGGCCCAAAACTTCT
1 AGGCCCAAAACTTCT
36585058 AGGCCCAAA
1 AGGCCCAAA
36585067 TTCAGGGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.34, C:0.34, G:0.16, T:0.16
Consensus pattern (15 bp):
AGGCCCAAAACTTCT
Found at i:36587881 original size:53 final size:55
Alignment explanation
Indices: 36587790--36587922 Score: 153
Period size: 53 Copynumber: 2.5 Consensus size: 55
36587780 TTTACCATTT
** * *
36587790 CCATGTCTTGACATGGTCTTATGTGGTATCCTTGCCTTAT-G-AACTCATCATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGTAACTCATCAATG
* * * * ** *
36587843 TCATGCCTTGACATGGTCTTACATGGGATCTTTTCCTTATCGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGTAACTCATCAATG
36587898 CCATGTCTTGACATGGTCTTACATG
1 CCATGTCTTGACATGGTCTTACATG
36587923 ATTTTCTTGC
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 33 0.51
54 1 0.02
55 31 0.48
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.40
Consensus pattern (55 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGTAACTCATCAATG
Found at i:36590624 original size:46 final size:46
Alignment explanation
Indices: 36590569--36590744 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
36590559 TATTTGGGCA
*
36590569 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *** * * ** *
36590615 TTCGAACTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
36590662 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
36590708 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
36590745 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
45 2 0.02
46 68 0.66
47 33 0.32
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:36590718 original size:93 final size:93
Alignment explanation
Indices: 36590565--36590736 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
36590555 AGGATATTTG
* *
36590565 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTCGAACTCGTTGAG
36590630 TTGAGTCCAAGTTCGAGAGATGTAACTA
66 TTGAGTCCAAGTTCGAGAGATGTAACTA
* * *
36590658 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC-CTGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTC-GAACTCGTTGA
*
36590722 GTTGAGTCCGAGTTC
65 GTTGAGTCCAAGTTC
36590737 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCTCGAACTCGTTGAG
TTGAGTCCAAGTTCGAGAGATGTAACTA
Found at i:36592672 original size:18 final size:17
Alignment explanation
Indices: 36592651--36592703 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
36592641 ATAAACATTG
36592651 CAGTAACAGTAATCAGTA
1 CAGTAACAGTAA-CAGTA
* * *
36592669 CAGTAATAGTAAAAGTG
1 CAGTAACAGTAACAGTA
36592686 CAGTAACAGTAAGCAGTA
1 CAGTAACAGTAA-CAGTA
36592704 TGCAAGTCCT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (17 bp):
CAGTAACAGTAACAGTA
Found at i:36592691 original size:17 final size:18
Alignment explanation
Indices: 36592649--36592697 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
36592639 CAATAAACAT
*
36592649 TGCAGTAACAGTAATCAG
1 TGCAGTAACAGTAATAAG
* *
36592667 TACAGTAATAGTAA-AAG
1 TGCAGTAACAGTAATAAG
36592684 TGCAGTAACAGTAA
1 TGCAGTAACAGTAA
36592698 GCAGTATGCA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.22
Consensus pattern (18 bp):
TGCAGTAACAGTAATAAG
Found at i:36593062 original size:27 final size:27
Alignment explanation
Indices: 36593025--36593268 Score: 303
Period size: 27 Copynumber: 9.0 Consensus size: 27
36593015 AAACATACAT
* * **
36593025 CACATAGGGGCAAAACAATCATCCTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
36593052 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
36593079 CTCATAAGGGCAAAACCGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
36593106 CACATAAGGGAAAAACTGTCATTTTAA
1 CACATAAGGGCAAAACAGTCATTTTAC
*
36593133 CACATAAGGGCAAAACAGTCATTTTAA
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
36593160 CACATAAGGGCAAAACAATCATTTTTC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
36593187 CACATAAGGGCAAAACAGTCATTTTAT
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
36593214 CATATAAGGGCAAAATCA-TCATTTTAA
1 CACATAAGGGCAAAA-CAGTCATTTTAC
*
36593241 CACATAAGGGAAAAACTA-TCATTTTAC
1 CACATAAGGGCAAAAC-AGTCATTTTAC
36593268 C
1 C
36593269 TTACAGAGGT
Statistics
Matches: 190, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 187 0.98
28 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:36593316 original size:54 final size:54
Alignment explanation
Indices: 36593258--36593364 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
36593248 GGGAAAAACT
*
36593258 ATCATTTTACCTTACAGA-GGTATTTTGGTCATTTTACCTTATGGGGGTATTTCA
1 ATCATTTTACCCTA-AGAGGGTATTTTGGTCATTTTACCTTATGGGGGTATTTCA
*
36593312 ATCATTTTACCCTATGAGGGTATTTTGGTCATTTTACCTTATGGGGGTATTTC
1 ATCATTTTACCCTAAGAGGGTATTTTGGTCATTTTACCTTATGGGGGTATTTC
36593365 GTCCCAACAT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
53 2 0.04
54 48 0.96
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.45
Consensus pattern (54 bp):
ATCATTTTACCCTAAGAGGGTATTTTGGTCATTTTACCTTATGGGGGTATTTCA
Found at i:36593354 original size:27 final size:27
Alignment explanation
Indices: 36593259--36593363 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 27
36593249 GGAAAAACTA
*
36593259 TCATTTTACCTTA-CAGAGGTATTTTGG
1 TCATTTTACCTTATGAG-GGTATTTTGG
* ***
36593286 TCATTTTACCTTATGGGGGTATTTCAA
1 TCATTTTACCTTATGAGGGTATTTTGG
*
36593313 TCATTTTACCCTATGAGGGTATTTTGG
1 TCATTTTACCTTATGAGGGTATTTTGG
*
36593340 TCATTTTACCTTATGGGGGTATTT
1 TCATTTTACCTTATGAGGGTATTT
36593364 CGTCCCAACA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
27 64 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.14, G:0.20, T:0.46
Consensus pattern (27 bp):
TCATTTTACCTTATGAGGGTATTTTGG
Found at i:36601228 original size:54 final size:54
Alignment explanation
Indices: 36601101--36601234 Score: 205
Period size: 54 Copynumber: 2.5 Consensus size: 54
36601091 TTGTCATTGT
* *
36601101 AGGGGATTTAGCCTGGACTGGTAATCCCGGCATTACTCTATGAGTTTATACTAT
1 AGGGGATTTAGCCTGGACTGGTAATCCCGACATTACTCTATGAGTTTATACTAC
** * *
36601155 AGGGGATTTAGCCCAGACTGATAATCCCGATATTACTCTATGAGTTTATACTAC
1 AGGGGATTTAGCCTGGACTGGTAATCCCGACATTACTCTATGAGTTTATACTAC
*
36601209 GGGGGATTTAGCCTGGACTGGTAATC
1 AGGGGATTTAGCCTGGACTGGTAATC
36601235 TCGTAGTAAA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 70 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (54 bp):
AGGGGATTTAGCCTGGACTGGTAATCCCGACATTACTCTATGAGTTTATACTAC
Found at i:36602822 original size:16 final size:15
Alignment explanation
Indices: 36602797--36602827 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
36602787 TCAATTTAGA
36602797 AAAAAGAAAAATTTT
1 AAAAAGAAAAATTTT
36602812 AAAAAGAAAAATTTT
1 AAAAAGAAAAATTTT
36602827 A
1 A
36602828 TAACCCGACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (15 bp):
AAAAAGAAAAATTTT
Found at i:36606173 original size:47 final size:47
Alignment explanation
Indices: 36606095--36606501 Score: 636
Period size: 47 Copynumber: 8.6 Consensus size: 47
36606085 CCCTTCGGGA
* * * * * **
36606095 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCTGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36606142 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36606189 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36606236 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36606282 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
36606331 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36606380 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36606427 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36606474 CTTATCACATATATATACACTTTCACAT
1 CTTATCAC--ATATATACACTTTCACAT
36606502 CACAATTATC
Statistics
Matches: 336, Mismatches: 19, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
46 8 0.02
47 217 0.65
48 38 0.11
49 73 0.22
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36606428 original size:191 final size:190
Alignment explanation
Indices: 36606095--36606502 Score: 669
Period size: 191 Copynumber: 2.2 Consensus size: 190
36606085 CCCTTCGGGA
* * ** *
36606095 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCTGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
36606158 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
*
36606223 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
36606282 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATAT
* * *
36606347 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCA
36606412 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
36606474 CTTATCACATATATATACACTTTCACATC
1 CTTATCACATATATATACACTTTCACATC
36606503 ACAATTATCC
Statistics
Matches: 203, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
187 10 0.05
188 1 0.00
189 36 0.18
191 128 0.63
192 28 0.14
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:36617310 original size:46 final size:44
Alignment explanation
Indices: 36617258--36617377 Score: 143
Period size: 46 Copynumber: 2.6 Consensus size: 44
36617248 TATGCGTGCT
* *
36617258 AGTGTAAGACATGTTTGGGACATGCATTGGCCACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG---CATTGATGAGAGCC
** *
36617304 AGTGTAAGACATGTCTAAGACATGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATT--GATGAGAGCC
36617350 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
36617378 AACCTCGAGG
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
43 4 0.06
46 60 0.94
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGATGAGAGCC
Found at i:36617879 original size:49 final size:49
Alignment explanation
Indices: 36617791--36617916 Score: 148
Period size: 49 Copynumber: 2.6 Consensus size: 49
36617781 TGTTGTGTGT
36617791 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGAT-GAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGGA-AGC
* * ** * * *
36617840 CAGTGTAAGACCTGTTTGGGGCATGGTGTCGGC-CTCGATATATGGAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGGAAGC
36617889 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
36617917 GTCAACAACT
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
48 1 0.02
49 49 0.77
50 14 0.22
ACGTcount: A:0.25, C:0.20, G:0.33, T:0.23
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGGAAGC
Found at i:36628099 original size:26 final size:26
Alignment explanation
Indices: 36628069--36628176 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
36628059 TGAAATTCCC
36628069 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36628095 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
**
36628121 ATCATTAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36628147 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36628173 ATCA
1 ATCA
36628177 ATTTGTATCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:36635164 original size:23 final size:23
Alignment explanation
Indices: 36635138--36635194 Score: 87
Period size: 26 Copynumber: 2.3 Consensus size: 23
36635128 ACATGAAATT
36635138 CCCATCATGGAACATTTACCTAA
1 CCCATCATGGAACATTTACCTAA
36635161 CCCATTATCATGGAACATTTACCTAA
1 CCC---ATCATGGAACATTTACCTAA
36635187 CCCATCAT
1 CCCATCAT
36635195 CTATTTGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
23 8 0.26
26 23 0.74
ACGTcount: A:0.33, C:0.32, G:0.07, T:0.28
Consensus pattern (23 bp):
CCCATCATGGAACATTTACCTAA
Found at i:36635171 original size:26 final size:26
Alignment explanation
Indices: 36635141--36635191 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
36635131 TGAAATTCCC
36635141 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36635167 ATCATGGAACATTTACCTAACCCAT
1 ATCATGGAACATTTACCTAACCCAT
36635192 CATCTATTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.29
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:36648558 original size:27 final size:27
Alignment explanation
Indices: 36648519--36648653 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
36648509 CCCTACAAGA
* * *
36648519 GTATTTC-AGTAACTTTGCAAACTGGGG
1 GTATTTCGA-TAATTTTACAAACAGGGG
* *
36648546 GTATTTCGATAACTTTACAAACTGGGG
1 GTATTTCGATAATTTTACAAACAGGGG
* * *
36648573 GTATTTCGGTAATTTTATAAACAGTGG
1 GTATTTCGATAATTTTACAAACAGGGG
36648600 GTATTTCGATAATTTTACAAACAGGGG
1 GTATTTCGATAATTTTACAAACAGGGG
*
36648627 GTATTTTGATAATTTTACAAACAGGGG
1 GTATTTCGATAATTTTACAAACAGGGG
36648654 ATCTTAACGA
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 96 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (27 bp):
GTATTTCGATAATTTTACAAACAGGGG
Found at i:36655285 original size:32 final size:32
Alignment explanation
Indices: 36655249--36655338 Score: 85
Period size: 32 Copynumber: 2.8 Consensus size: 32
36655239 CAAGCCCATC
* *
36655249 GGGCCTAAGCCC-ATTCAGTTAACAGTGAAACT
1 GGGCCTAAGCCCTATTCAGATAACAAT-AAACT
* *
36655281 GGGCC-AGAGCCCTTTTCAGATCACAATAAACT
1 GGGCCTA-AGCCCTATTCAGATAACAATAAACT
*
36655313 GGGCCTTAGCCCCTTATTCAGATAAC
1 GGGCCTAAG-CCC-TATTCAGATAAC
36655339 TGTACTACCC
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
31 1 0.02
32 22 0.48
33 13 0.28
34 10 0.22
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (32 bp):
GGGCCTAAGCCCTATTCAGATAACAATAAACT
Found at i:36655681 original size:26 final size:26
Alignment explanation
Indices: 36655652--36655704 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
36655642 TCCAACATGC
36655652 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* * *
36655678 ATTTTGGTACTTTATCTCTTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
36655704 A
1 A
36655705 AAATTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.21, C:0.13, G:0.23, T:0.43
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:36656607 original size:24 final size:24
Alignment explanation
Indices: 36656573--36656665 Score: 132
Period size: 24 Copynumber: 3.9 Consensus size: 24
36656563 CTGCTCTTTG
* *
36656573 ATCAGCTCCTAAATCTTCTCCTTT
1 ATCAGCTCCTAAATCCTCTCCCTT
* *
36656597 ATTAGCACCTAAATCCTCTCCCTT
1 ATCAGCTCCTAAATCCTCTCCCTT
*
36656621 ATCATCTCCTAAATCCTCTCCCTT
1 ATCAGCTCCTAAATCCTCTCCCTT
*
36656645 ATCAGCTCCTAAATCTTCTCC
1 ATCAGCTCCTAAATCCTCTCC
36656666 TGACAGCCTT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.23, C:0.38, G:0.03, T:0.37
Consensus pattern (24 bp):
ATCAGCTCCTAAATCCTCTCCCTT
Found at i:36662857 original size:32 final size:34
Alignment explanation
Indices: 36662821--36662887 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
36662811 GTTAACAGTG
* *
36662821 AAACTGGGCCAGAG-CCCTT-TTCAAATCACAAT
1 AAACTAGGCCAGAGCCCCTTATTCAAATAACAAT
**
36662853 AAACTAGGCCTTAGCCCCTTATTCAAATAACAAT
1 AAACTAGGCCAGAGCCCCTTATTCAAATAACAAT
36662887 A
1 A
36662888 CAGCCCATAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 11 0.38
33 5 0.17
34 13 0.45
ACGTcount: A:0.37, C:0.27, G:0.12, T:0.24
Consensus pattern (34 bp):
AAACTAGGCCAGAGCCCCTTATTCAAATAACAAT
Found at i:36663226 original size:26 final size:26
Alignment explanation
Indices: 36663197--36663249 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36663187 TCCAACATGC
36663197 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
36663223 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
36663249 A
1 A
36663250 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:36664162 original size:24 final size:23
Alignment explanation
Indices: 36664134--36664210 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 23
36664124 CCAACTCCTG
36664134 CTCCTTGATCAGCTCCTAAATCTT
1 CTCCTT-ATCAGCTCCTAAATCTT
36664158 CTCCTTTATCAGCTCCTAAATCCTT
1 CTCC-TTATCAGCTCCTAAAT-CTT
36664183 -TCCCTTATCAGCTCCTAAATCTT
1 CT-CCTTATCAGCTCCTAAATCTT
36664206 CTCCT
1 CTCCT
36664211 GACAGCCTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
23 6 0.12
24 36 0.73
25 7 0.14
ACGTcount: A:0.19, C:0.36, G:0.05, T:0.39
Consensus pattern (23 bp):
CTCCTTATCAGCTCCTAAATCTT
Found at i:36668771 original size:27 final size:29
Alignment explanation
Indices: 36668720--36668779 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
36668710 TTGTTTGCTC
* **
36668720 TTCTAAACAATATTTTTGGATTC-AAAAA
1 TTCTAAACAAGATTTTTAAATTCAAAAAA
36668748 TTCTAAACAAGA-TTTTAAATTCAAAAAA
1 TTCTAAACAAGATTTTTAAATTCAAAAAA
36668776 TTCT
1 TTCT
36668780 TGGATGTCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 8 0.29
28 20 0.71
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (29 bp):
TTCTAAACAAGATTTTTAAATTCAAAAAA
Found at i:36672936 original size:47 final size:47
Alignment explanation
Indices: 36672885--36673569 Score: 1093
Period size: 47 Copynumber: 14.4 Consensus size: 47
36672875 TTGTGATGTG
36672885 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36672932 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
36672979 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
36673026 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
36673075 AATGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
36673122 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36673169 AGTGTATATTTATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
1 AGTGTATA--TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36673218 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36673267 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
36673314 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36673361 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
36673410 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36673457 AGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGAA
* * * * * *
36673504 AGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
36673551 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
36673570 TCCCGAAGGG
Statistics
Matches: 596, Mismatches: 32, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
46 2 0.00
47 418 0.70
48 1 0.00
49 171 0.29
51 4 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:36673100 original size:143 final size:141
Alignment explanation
Indices: 36672885--36673569 Score: 1102
Period size: 143 Copynumber: 4.8 Consensus size: 141
36672875 TTGTGATGTG
*
36672885 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
36672950 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
36673015 ATGAATGTGAA
131 ATGAATGTGAA
* *
36673026 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGAT
*
36673091 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
36673156 TGATGAATGTGAA
129 TGATGAATGTGAA
36673169 AGTGTATATTTATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTG
1 AGTGTATA--TATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTG
* * * *
36673234 ATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
62 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAA
36673299 TGTGATGAATGTGAA
127 TGTGATGAATGTGAA
*
36673314 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGAT
* * *
36673379 AAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATG
36673444 TGATGAATGTGAA
129 TGATGAATGTGAA
36673457 AGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATA
* * * * * * *
36673521 GGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
65 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36673570 TCCCGAAGGG
Statistics
Matches: 516, Mismatches: 21, Indels: 14
0.94 0.04 0.03
Matches are distributed among these distances:
141 62 0.12
142 1 0.00
143 360 0.70
145 93 0.18
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (141 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
ATGAATGTGAA
Found at i:36673499 original size:335 final size:333
Alignment explanation
Indices: 36672889--36673569 Score: 1240
Period size: 335 Copynumber: 2.0 Consensus size: 333
36672879 GATGTGAGTG
*
36672889 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
36672954 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
36673019 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
131 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
36673084 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
196 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* *
36673149 GCCAATGTGATGAATGTGAAAGTGTATATTTATGTGATAAGGCCTAATGGCCAATGTGATGAATG
261 GCCAATGTGATGAATGTGAAAGTGTATA--TATGTGATAAGGCCGAATGGCCAACGTGATGAATG
36673214 TGAAAGTGTA
324 TGAAAGTGTA
36673224 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
36673289 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
66 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
36673354 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATAT
131 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
* *
36673419 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATG
196 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* * *
36673484 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTG
261 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTG
36673549 AAAGTGTA
326 AAAGTGTA
36673557 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
36673570 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
331 10 0.03
332 1 0.00
333 42 0.12
335 283 0.84
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (333 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATGAATGTG
AAAGTGTA
Found at i:36673744 original size:37 final size:37
Alignment explanation
Indices: 36673688--36673766 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36673678 CCAAGCTCTA
* * *
36673688 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
36673725 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36673762 AAGAC
1 AAGAC
36673767 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36679046 original size:28 final size:29
Alignment explanation
Indices: 36679014--36679128 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
36679004 TACCTATATT
* *
36679014 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
36679042 TGGCCCATTAGGCCCAAACCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
36679071 TGGCCTATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
36679100 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
36679128 T
1 T
36679129 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
28 27 0.37
29 45 0.62
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:36679105 original size:58 final size:57
Alignment explanation
Indices: 36679005--36679115 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
36678995 AAATTCACAT
* *
36679005 ACCTATATTTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAACC
1 ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAACC
* * * * *
36679062 ACCTGTATATGGCCTATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
36679116 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 20 0.43
58 26 0.57
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (57 bp):
ACCTATATATGGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAACC
Found at i:36685010 original size:6 final size:6
Alignment explanation
Indices: 36685003--36685039 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
36684993 TCTAAGAAAT
* *
36685003 AAAAAT AAAAAG AAAAAG AAAAGG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A
36685040 TAACTGAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:36685024 original size:18 final size:18
Alignment explanation
Indices: 36685003--36685054 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
36684993 TCTAAGAAAT
36685003 AAAAATAAAAAGAAAAAG
1 AAAAATAAAAAGAAAAAG
**
36685021 AAAAGGAAAAAGAAAAAG
1 AAAAATAAAAAGAAAAAG
* * *
36685039 ATAACTGAAAAGAAAA
1 AAAAATAAAAAGAAAA
36685055 TAAATAAGAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (18 bp):
AAAAATAAAAAGAAAAAG
Found at i:36686648 original size:16 final size:16
Alignment explanation
Indices: 36686627--36686661 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
36686617 ATAATAAAAC
36686627 AAATAAA-AAATGAAAT
1 AAATAAACAAAT-AAAT
36686643 AAATAAACAAATAAAT
1 AAATAAACAAATAAAT
36686659 AAA
1 AAA
36686662 ATGGAAGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.17
Consensus pattern (16 bp):
AAATAAACAAATAAAT
Found at i:36686654 original size:12 final size:12
Alignment explanation
Indices: 36686623--36686661 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
36686613 AATGATAATA
36686623 AAACAAATAAA-
1 AAACAAATAAAT
*
36686634 AAATGAAATAAAT
1 AAA-CAAATAAAT
36686647 AAACAAATAAAT
1 AAACAAATAAAT
36686659 AAA
1 AAA
36686662 ATGGAAGGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 3 0.12
12 18 0.75
13 3 0.12
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.15
Consensus pattern (12 bp):
AAACAAATAAAT
Found at i:36690214 original size:27 final size:27
Alignment explanation
Indices: 36690156--36690215 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
36690146 TACATATCAC
* *
36690156 AGGGGTATATCAGTCATTTTACCTCAT
1 AGGGGTATAGCAGTCATTTTACCTAAT
*
36690183 AGGGGTATAGCAGTCATTTTATCTAAT
1 AGGGGTATAGCAGTCATTTTACCTAAT
*
36690210 TGGGGT
1 AGGGGT
36690216 CTAGGTATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.37
Consensus pattern (27 bp):
AGGGGTATAGCAGTCATTTTACCTAAT
Found at i:36693229 original size:24 final size:24
Alignment explanation
Indices: 36693194--36693244 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
36693184 AGGAAGTGCT
*
36693194 AAAAGGGCTCTGCCCCATTTATCA
1 AAAAGGGCTCTGCCCCAGTTATCA
* *
36693218 AAAAGGGTTCTGCCCCAGTTATTA
1 AAAAGGGCTCTGCCCCAGTTATCA
36693242 AAA
1 AAA
36693245 GAGGCTAGGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTCTGCCCCAGTTATCA
Found at i:36693446 original size:42 final size:42
Alignment explanation
Indices: 36693385--36693476 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
36693375 TAGTCTCCCC
* * *
36693385 AAATGGGCTTGCATGCATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTACATGTGATATTG
*
36693427 AAATGGGCTTGCATACATTCATTGATATTACGTGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTACATGTGATATTG
36693469 AAATGGGC
1 AAATGGGC
36693477 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTACATGTGATATTG
Found at i:36693549 original size:31 final size:31
Alignment explanation
Indices: 36693500--36693582 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
36693490 CGCTTACAGT
36693500 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
36693530 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
36693561 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
36693583 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 15 0.30
31 35 0.70
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:36694921 original size:14 final size:14
Alignment explanation
Indices: 36694902--36694931 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
36694892 ATAATGTTAT
*
36694902 TGCTAATTTATTAA
1 TGCTAATTTATGAA
36694916 TGCTAATTTATGAA
1 TGCTAATTTATGAA
36694930 TG
1 TG
36694932 TACATACTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (14 bp):
TGCTAATTTATGAA
Found at i:36700997 original size:27 final size:26
Alignment explanation
Indices: 36700953--36701004 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
36700943 CTCGTTGTAA
*
36700953 TCTGGTGGCCTCACCACATATATCTGT
1 TCTGGTGACCTCACCACA-ATATCTGT
* *
36700980 TCTGGTGACTTCATCACAATATCTG
1 TCTGGTGACCTCACCACAATATCTG
36701005 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCACCACAATATCTGT
Found at i:36702639 original size:24 final size:24
Alignment explanation
Indices: 36702612--36702675 Score: 119
Period size: 24 Copynumber: 2.7 Consensus size: 24
36702602 GCCATGTTTT
36702612 CTCGCACACATAGTGCCGCATAGC
1 CTCGCACACATAGTGCCGCATAGC
36702636 CTCGCACACATAGTGCCGCATAGC
1 CTCGCACACATAGTGCCGCATAGC
*
36702660 CTTGCACACATAGTGC
1 CTCGCACACATAGTGC
36702676 TGTATTTTCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.25, C:0.36, G:0.20, T:0.19
Consensus pattern (24 bp):
CTCGCACACATAGTGCCGCATAGC
Found at i:36717711 original size:55 final size:56
Alignment explanation
Indices: 36717646--36717760 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
36717636 AGCATGGCTG
* * *
36717646 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * * *
36717702 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAATAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
36717757 CCAG
1 CCAG
36717761 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 28 0.56
56 21 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:36717757 original size:28 final size:27
Alignment explanation
Indices: 36717671--36717760 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
36717661 GTGACAGAGT
*
36717671 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
36717700 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
36717727 CACCAGAATAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
36717755 CACCAG
1 CACCAG
36717761 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:36717937 original size:28 final size:28
Alignment explanation
Indices: 36717866--36717929 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
36717856 AAATTAACCC
*
36717866 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
36717894 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
36717922 TAGGGGTA
1 TAGGGGTA
36717930 CTCTGGTACA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:36719228 original size:24 final size:24
Alignment explanation
Indices: 36719201--36719247 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
36719191 CTAGATTTCC
*
36719201 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAGCTCCTAAATCCTA
36719225 TCCCTTATCAGCTCCTAAATCCT
1 TCCCTTATCAGCTCCTAAATCCT
36719248 CTCCTGACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.38, G:0.04, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAGCTCCTAAATCCTA
Found at i:36725568 original size:55 final size:56
Alignment explanation
Indices: 36725503--36725617 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
36725493 AGCATGGCTG
* * *
36725503 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
36725559 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
36725614 CCAG
1 CCAG
36725618 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:36725614 original size:28 final size:27
Alignment explanation
Indices: 36725528--36725617 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
36725518 GTGACAGAGT
*
36725528 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
36725557 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
36725584 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
36725612 CACCAG
1 CACCAG
36725618 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:36727056 original size:24 final size:24
Alignment explanation
Indices: 36727029--36727075 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
36727019 CTAGATTTCC
*
36727029 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAGCTCCTAAATCCTA
36727053 TCCCTTATCAGCTCCTAAATCCT
1 TCCCTTATCAGCTCCTAAATCCT
36727076 CTCCTGACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.38, G:0.04, T:0.36
Consensus pattern (24 bp):
TCCCTTATCAGCTCCTAAATCCTA
Found at i:36727679 original size:22 final size:23
Alignment explanation
Indices: 36727653--36727698 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
36727643 CAACCAAATC
36727653 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
36727675 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
36727698 A
1 A
36727699 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:36727704 original size:23 final size:23
Alignment explanation
Indices: 36727660--36727704 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
36727650 ATCAATTCAA
*
36727660 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
36727683 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
36727705 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:36734312 original size:27 final size:27
Alignment explanation
Indices: 36734274--36734327 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
36734264 ACTTAATGCA
36734274 TGGGATTTTGATAAACATGATATGTAT
1 TGGGATTTTGATAAACATGATATGTAT
36734301 TGGGATTTTGATAAACATGATATGTAT
1 TGGGATTTTGATAAACATGATATGTAT
36734328 GATATGCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.04, G:0.22, T:0.41
Consensus pattern (27 bp):
TGGGATTTTGATAAACATGATATGTAT
Found at i:36734340 original size:20 final size:20
Alignment explanation
Indices: 36734315--36734365 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
36734305 ATTTTGATAA
*
36734315 ACATGATATGTATGATATGC
1 ACATGACATGTATGATATGC
36734335 ACATGACATGTATGATATGC
1 ACATGACATGTATGATATGC
*
36734355 ACATGAGATGT
1 ACATGACATGT
36734366 TCATAAATGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ACATGACATGTATGATATGC
Found at i:36734437 original size:24 final size:24
Alignment explanation
Indices: 36734410--36734539 Score: 199
Period size: 24 Copynumber: 5.4 Consensus size: 24
36734400 GGAGGAAGTG
36734410 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
36734434 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
36734458 CAAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
36734482 C-AAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
36734505 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
36734529 TAAAAGAGGCT
1 CAAAAG-GGCT
36734540 AGGCCTCCAG
Statistics
Matches: 100, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
23 22 0.22
24 74 0.74
25 4 0.04
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:36734510 original size:47 final size:48
Alignment explanation
Indices: 36734410--36734539 Score: 199
Period size: 47 Copynumber: 2.7 Consensus size: 48
36734400 GGAGGAAGTG
*
36734410 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAATTAT
*
36734458 CAAAAGGGCTTATGCCCCAATTATC-AAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAATTAT
* * *
36734505 TAAAAGGGCTTTTGCCCCAGTTATTAAAAGAGGCT
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCT
36734540 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
47 42 0.57
48 28 0.38
49 4 0.05
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (48 bp):
CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAATTAT
Found at i:36734781 original size:31 final size:31
Alignment explanation
Indices: 36734746--36734809 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
36734736 CGTTTACAGT
36734746 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
36734777 AAAGGCTTCGGCCCAGTGTTATGAATTATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
36734808 AA
1 AA
36734810 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:36736138 original size:20 final size:20
Alignment explanation
Indices: 36736113--36736159 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
36736103 TTTCATGGAC
*
36736113 AAAAATGGACATACATAGAT
1 AAAAATAGACATACATAGAT
36736133 AAAAATAGACATACATAGAT
1 AAAAATAGACATACATAGAT
36736153 AAAAATA
1 AAAAATA
36736160 ACTAAAGATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.62, C:0.09, G:0.11, T:0.19
Consensus pattern (20 bp):
AAAAATAGACATACATAGAT
Found at i:36737200 original size:53 final size:54
Alignment explanation
Indices: 36737018--36737224 Score: 227
Period size: 53 Copynumber: 3.8 Consensus size: 54
36737008 ATTAGGGTTT
* * * *
36737018 AAGGATACCAAGTAAGACCATGCCAAGGCATAGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * * * * *
36737072 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGT-AAGTTCTATAAGGC
* * * * *
36737127 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * *
36737180 AAGGATACCACGTAAGACCATGTCAAGACATGGCAGTGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
36737225 TAAAAAGGAA
Statistics
Matches: 122, Mismatches: 30, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 44 0.36
54 36 0.30
55 42 0.34
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:36743345 original size:53 final size:54
Alignment explanation
Indices: 36743168--36743374 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
36743158 ATTAAGGTTT
* * * * *
36743168 AAGGATACCAAGTAAGACCATGCCACGGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * * * * * *
36743222 AAGGAAATCATTTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * * * *
36743277 AAAGATCCCATGTAAGACCATGCCAAGGCATTGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * *
36743330 AAGGATACCACGTAAGACAATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
36743375 TAAAAAGGAA
Statistics
Matches: 120, Mismatches: 32, Indels: 3
0.77 0.21 0.02
Matches are distributed among these distances:
53 44 0.37
54 35 0.29
55 41 0.34
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:36743392 original size:53 final size:53
Alignment explanation
Indices: 36743168--36743392 Score: 130
Period size: 54 Copynumber: 4.2 Consensus size: 53
36743158 ATTAAGGTTT
* * * * * * * *
36743168 AAGGATACCAAGTAAGACCATGCCACGGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCACGTAAGACAATGCCAAGACATGGCAATGGTAAGTT-AAAAAGGA
* * ** * * * * ** *
36743222 AAGGAAATCATTTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCA
1 AAGGATACCACGTAAGACAATGCCAAGACATGGCAATGGTAAGTTA--AAAAGG-A
* * * * * * * * *
36743278 AA-GATCCCATGTAAGACCATGCCAAGGCATTGCAATGGTGAGTTCATAAGGC
1 AAGGATACCACGTAAGACAATGCCAAGACATGGCAATGGTAAGTTAAAAAGGA
*
36743330 AAGGATACCACGTAAGACAATGTCAAGACATGGCAATGGTAAGTTTAAAAAGGA
1 AAGGATACCACGTAAGACAATGCCAAGACATGGCAATGGTAAG-TTAAAAAGGA
36743384 AAGG-TACCA
1 AAGGATACCA
36743393 GTGTATCCTT
Statistics
Matches: 129, Mismatches: 37, Indels: 11
0.73 0.21 0.06
Matches are distributed among these distances:
52 2 0.02
53 44 0.34
54 46 0.36
55 35 0.27
56 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
AAGGATACCACGTAAGACAATGCCAAGACATGGCAATGGTAAGTTAAAAAGGA
Found at i:36750951 original size:49 final size:49
Alignment explanation
Indices: 36750874--36751111 Score: 235
Period size: 49 Copynumber: 4.8 Consensus size: 49
36750864 TAGCCAAATC
* * *
36750874 TATCTGGTACGCATGGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * * *
36750923 TATCCGGTACCCGTAGTAGCCTGCACTTAATACTACACACGTGACTTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAAT
* * * * * * *
36750973 CATCTGATACACATAGTAGCCTACACTTAGTACTACACAGGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* *
36751024 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA-
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
** *
36751072 TATTCCGGTACATGTAGTAGCCTGCACCTAGTACTACACA
1 TA-TCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
36751112 CGTGACCTCA
Statistics
Matches: 153, Mismatches: 32, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
48 2 0.01
49 70 0.46
50 43 0.28
51 38 0.25
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:36751058 original size:101 final size:99
Alignment explanation
Indices: 36750875--36751062 Score: 259
Period size: 99 Copynumber: 1.9 Consensus size: 99
36750865 AGCCAAATCT
* * * * * *
36750875 ATCTGGTACGCATGGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACCCGTAGT
1 ATCTGATACACATAGTAGCCTACACTTAGTACTACACAGGCGACCAATTATCCGGTACCCATAGT
36750940 AGCCTGCACTTAATACTACACACGTGACTTAACC
66 AGCCTGCACTTAATACTACACACGTGACTTAACC
* * * *
36750974 ATCTGATACACATAGTAGCCTACACTTAGTACTACACAGGTGATCGAAGTTATCGGGTACGCATA
1 ATCTGATACACATAGTAGCCTACACTTAGTACTACACAGGCGA-CCAA-TTATCCGGTACCCATA
*
36751039 GTAGCCTGCACTTAGTACTACACA
64 GTAGCCTGCACTTAATACTACACA
36751063 TGCGACCAAT
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
99 37 0.49
100 3 0.04
101 36 0.47
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (99 bp):
ATCTGATACACATAGTAGCCTACACTTAGTACTACACAGGCGACCAATTATCCGGTACCCATAGT
AGCCTGCACTTAATACTACACACGTGACTTAACC
Found at i:36752050 original size:22 final size:22
Alignment explanation
Indices: 36751979--36752083 Score: 86
Period size: 23 Copynumber: 4.6 Consensus size: 22
36751969 GTAGCTCGTA
* * *
36751979 AGAGCTTACTATTTTAGCTCATT
1 AGAGCTTACT-GTTCAGCTCAAT
* * *
36752002 GGAGCTTACCGATTTAGCTCGAA-
1 AGAGCTTACTG-TTCAGCTC-AAT
*
36752025 AGAGCTGACTGTTCAGCTCAAT
1 AGAGCTTACTGTTCAGCTCAAT
*
36752047 AGAGCTTACCGTTTTCAGCTCAAT
1 AGAGCTTA-C-TGTTCAGCTCAAT
36752071 AGAGCTTACTGTT
1 AGAGCTTACTGTT
36752084 TATCAGCTCA
Statistics
Matches: 66, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
21 2 0.03
22 17 0.26
23 26 0.39
24 21 0.32
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (22 bp):
AGAGCTTACTGTTCAGCTCAAT
Found at i:36752067 original size:46 final size:45
Alignment explanation
Indices: 36751970--36752107 Score: 136
Period size: 46 Copynumber: 3.0 Consensus size: 45
36751960 AGACTCACCG
* * * * *
36751970 TAGCTCGTAAGAGCTTACTATTTTAGCTCATTGGAGCTTACCGATT
1 TAGCTCGAAAGAGCTTACT-GTTCAGCTCAATAGAGCTTACCGATT
* *
36752016 TAGCTCGAAAGAGCTGACTGTTCAGCTCAATAGAGCTTACCGTTT
1 TAGCTCGAAAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGATT
36752061 TCAGCTC-AATAGAGCTTACTGTTTATCAGCTCAGA-AGAGCTTACCGA
1 T-AGCTCGAA-AGAGCTTACTG--T-TCAGCTCA-ATAGAGCTTACCGA
36752108 CCATGACTTG
Statistics
Matches: 77, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
45 24 0.31
46 32 0.42
48 1 0.01
49 19 0.25
50 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (45 bp):
TAGCTCGAAAGAGCTTACTGTTCAGCTCAATAGAGCTTACCGATT
Found at i:36752099 original size:25 final size:24
Alignment explanation
Indices: 36751979--36752106 Score: 115
Period size: 24 Copynumber: 5.5 Consensus size: 24
36751969 GTAGCTCGTA
** *
36751979 AGAGCTTACTATTTT-AGCTCATT
1 AGAGCTTACCGTTTTCAGCTCAAT
* *
36752002 GGAGCTTACCGATTT-AGCTCGAA-
1 AGAGCTTACCGTTTTCAGCTC-AAT
* *
36752025 AGAGCTGA-C-TGTTCAGCTCAAT
1 AGAGCTTACCGTTTTCAGCTCAAT
36752047 AGAGCTTACCGTTTTCAGCTCAAT
1 AGAGCTTACCGTTTTCAGCTCAAT
*
36752071 AGAGCTTACTGTTTATCAGCTCAGA-
1 AGAGCTTACCGTTT-TCAGCTCA-AT
36752096 AGAGCTTACCG
1 AGAGCTTACCG
36752107 ACCATGACTT
Statistics
Matches: 85, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
21 4 0.05
22 13 0.15
23 23 0.27
24 26 0.31
25 18 0.21
26 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (24 bp):
AGAGCTTACCGTTTTCAGCTCAAT
Found at i:36755685 original size:27 final size:27
Alignment explanation
Indices: 36755655--36755706 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
36755645 CAATAACAGT
*
36755655 TGGGC-CTAGCCCATTAACAGAATCAAG
1 TGGGCTCTAGCCCAGT-ACAGAATCAAG
*
36755682 TGGGCTTTAGCCCAGTACAGAATCA
1 TGGGCTCTAGCCCAGTACAGAATCA
36755707 GTATCAGATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 14 0.64
28 8 0.36
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (27 bp):
TGGGCTCTAGCCCAGTACAGAATCAAG
Found at i:36755772 original size:21 final size:21
Alignment explanation
Indices: 36755746--36755802 Score: 89
Period size: 21 Copynumber: 2.7 Consensus size: 21
36755736 CCAGCCCAGT
36755746 CCAACCAACACACCACC-GATA
1 CCAACCAACACACCACCTG-TA
*
36755767 CCAACCAACATACCACCTGTA
1 CCAACCAACACACCACCTGTA
36755788 CCAACCAACACACCA
1 CCAACCAACACACCA
36755803 TGTGGGGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.42, C:0.47, G:0.04, T:0.07
Consensus pattern (21 bp):
CCAACCAACACACCACCTGTA
Found at i:36759719 original size:27 final size:27
Alignment explanation
Indices: 36759689--36759990 Score: 358
Period size: 27 Copynumber: 11.2 Consensus size: 27
36759679 CGATTTACAA
* *
36759689 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
36759716 AATTACTGAAATACCTTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
36759743 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* *
36759770 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
36759797 AGTTATTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
36759824 AATTACCGAAATACCCTTGTAGGCTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * *
36759851 AAATACTAAAATACCCCTGTTGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
*
36759878 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
36759905 AATTA-TCGAAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAG
* * ** *
36759932 AAATACCGAAATACATTTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * *
36759959 AATTAC-GAGATACCGTTGTGGGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAG
36759985 AATTAC
1 AATTAC
36759991 CATTTTGCCC
Statistics
Matches: 235, Mismatches: 36, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
26 22 0.09
27 212 0.90
28 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:36759744 original size:81 final size:81
Alignment explanation
Indices: 36759695--36759991 Score: 416
Period size: 81 Copynumber: 3.7 Consensus size: 81
36759685 ACAAAATTAT
* *
36759695 TGAAATACCCCTGTAGGGTAGAATTACTGAAATACCTTTGTAGGGTAGAATTATCGAAATACCCT
1 TGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCT
*
36759760 TGTAGGGTAGAAATAC
66 TGTAGGCTAGAAATAC
* *
36759776 TGAAATACCCCTGTAGGGTAGAGTTATTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCT
1 TGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCT
36759841 TGTAGGCTAGAAATAC
66 TGTAGGCTAGAAATAC
* * * *
36759857 TAAAATACCCCTGTTGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCT
1 TGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCT
*
36759922 TGTAGGGTAGAAATAC
66 TGTAGGCTAGAAATAC
* *** * * * * *
36759938 CGAAATACATTTATAGGGTAGAATTAC-GAGATACCGTTGTGGGGTAAAATTACC
1 TGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACC
36759992 ATTTTGCCCT
Statistics
Matches: 191, Mismatches: 25, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
80 21 0.11
81 170 0.89
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (81 bp):
TGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCT
TGTAGGCTAGAAATAC
Found at i:36760554 original size:22 final size:22
Alignment explanation
Indices: 36760502--36760555 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
36760492 GCCAATTATT
*
36760502 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGCACCAAC
* *
36760524 CT-ACATATGGCTTTGTACCAAC
1 CTGA-TTATGGCTTTGCACCAAC
36760546 CTGATTATGG
1 CTGATTATGG
36760556 TTGTGTGCCG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 1 0.04
22 24 0.92
23 1 0.04
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (22 bp):
CTGATTATGGCTTTGCACCAAC
Found at i:36760684 original size:27 final size:27
Alignment explanation
Indices: 36760654--36760706 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
36760644 ATTATCTAAT
* *
36760654 TCTGGTGGCTCTACCACAATATCTGTA
1 TCTGGTGACTCTACCAAAATATCTGTA
**
36760681 TCTGGTGACTCTGTCAAAATATCTGT
1 TCTGGTGACTCTACCAAAATATCTGT
36760707 CATGGCAGCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.36
Consensus pattern (27 bp):
TCTGGTGACTCTACCAAAATATCTGTA
Found at i:36760837 original size:6 final size:6
Alignment explanation
Indices: 36760828--36760952 Score: 78
Period size: 6 Copynumber: 20.3 Consensus size: 6
36760818 TTGCATTCAC
* * *
36760828 ATTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG ATTCT- ATCACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT--TCTG
* * *
36760878 AGTCTG ATTCTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* * *
36760927 AATCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
36760953 AATTTTTCTT
Statistics
Matches: 91, Mismatches: 17, Indels: 22
0.70 0.13 0.17
Matches are distributed among these distances:
5 6 0.07
6 73 0.80
7 9 0.10
8 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.14, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:36760863 original size:31 final size:31
Alignment explanation
Indices: 36760828--36760927 Score: 96
Period size: 31 Copynumber: 3.2 Consensus size: 31
36760818 TTGCATTCAC
* *
36760828 ATTCTGATTCTGATTCTGTTACTTGATACTG
1 ATTCTGATTCTGATTCTGTAACTTGATTCTG
** * *
36760859 ATTCTGATTCT-A-TCACCTAAGTCTGATTCTA
1 ATTCTGATTCTGATTC-TGTAACT-TGATTCTG
* *
36760890 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTAACTTGATTCTG
36760921 ATTCTGA
1 ATTCTGA
36760928 ATCTCATTTT
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
29 2 0.04
30 4 0.08
31 42 0.79
32 3 0.06
33 2 0.04
ACGTcount: A:0.21, C:0.20, G:0.14, T:0.45
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTAACTTGATTCTG
Found at i:36760884 original size:25 final size:24
Alignment explanation
Indices: 36760830--36760894 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 24
36760820 GCATTCACAT
* * * *
36760830 TCTGATTCTGATTCTGTTACTTGA
1 TCTGATTCTGATTCTATCACCTAA
36760854 TACTGATTCTGATTCTATCACCTAA
1 T-CTGATTCTGATTCTATCACCTAA
*
36760879 GTCTGATTCTAATTCT
1 -TCTGATTCTGATTCT
36760895 GATTCTGATT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 1 0.03
25 32 0.94
26 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.12, T:0.46
Consensus pattern (24 bp):
TCTGATTCTGATTCTATCACCTAA
Found at i:36760897 original size:37 final size:37
Alignment explanation
Indices: 36760856--36760944 Score: 117
Period size: 37 Copynumber: 2.4 Consensus size: 37
36760846 TTACTTGATA
36760856 CTGATTCTGATTCTATCACCTAAGTCTGATTCT-AATT
1 CTGATTCTGATTCTATCACCTAAGTCTGATTCTGAA-T
* * *
36760893 CTGATTCTGATTCTGTCACCTGATTCTGATTCTGAAT
1 CTGATTCTGATTCTATCACCTAAGTCTGATTCTGAAT
* *
36760930 CTCATTTTGATTCTA
1 CTGATTCTGATTCTA
36760945 GTTCTGATAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
37 43 0.96
38 2 0.04
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (37 bp):
CTGATTCTGATTCTATCACCTAAGTCTGATTCTGAAT
Found at i:36760917 original size:19 final size:19
Alignment explanation
Indices: 36760856--36760926 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
36760846 TTACTTGATA
*
36760856 CTGATTCTGATTCTATCAC
1 CTGATTCTGATTCTGTCAC
* * * *
36760875 CTAAGTCTGATTC--TAATT
1 CTGATTCTGATTCTGTCA-C
36760893 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
36760912 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
36760927 AATCTCATTT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
17 2 0.05
18 11 0.27
19 26 0.63
20 2 0.05
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.44
Consensus pattern (19 bp):
CTGATTCTGATTCTGTCAC
Found at i:36762157 original size:6 final size:6
Alignment explanation
Indices: 36762136--36762246 Score: 109
Period size: 6 Copynumber: 18.2 Consensus size: 6
36762126 TATTAGAACT
* * * *
36762136 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
36762185 AAAATC AGAATC AGAATC AGAATC AGAATT AGAATC AGCATC AGGTAA-C
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
36762234 AGAATC AGAATC A
1 AGAATC AGAATC A
36762247 AAATGTGAAT
Statistics
Matches: 87, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
5 3 0.03
6 76 0.87
7 6 0.07
8 2 0.02
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:36762236 original size:61 final size:61
Alignment explanation
Indices: 36762136--36762250 Score: 176
Period size: 61 Copynumber: 1.9 Consensus size: 61
36762126 TATTAGAACT
* *
36762136 AGAATCAAAATGAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAAAATCAGAATC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAAAATCAGAATC
* * * *
36762197 AGAATCAGAATCAGAATTAGAATCAGCATCAGGTAACAGAATCAGAATCAAAAT
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAAAAT
36762251 GTGAATGCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.51, C:0.15, G:0.17, T:0.17
Consensus pattern (61 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAACAGAATCAAAATCAAAATCAGAATC
Found at i:36762903 original size:27 final size:27
Alignment explanation
Indices: 36762873--36763006 Score: 171
Period size: 27 Copynumber: 5.0 Consensus size: 27
36762863 ATGGAAATCT
* * *
36762873 TACCCCACAAGGGTATCTCGGTAATTC
1 TACCCTACAAGGGTATTTCAGTAATTC
* *
36762900 TACCCTACAGGGGTATTTCAGTATTTC
1 TACCCTACAAGGGTATTTCAGTAATTC
36762927 TACCCTACAAGGGTATTTC-GATAATTC
1 TACCCTACAAGGGTATTTCAG-TAATTC
*
36762954 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAAGGGTATTTCAGTAATTC
* * *
36762981 TACCCTATAGGGGTATTTCAATAATT
1 TACCCTACAAGGGTATTTCAGTAATT
36763007 TTGTAAATTG
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.01
27 93 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCAGTAATTC
Found at i:36762986 original size:54 final size:54
Alignment explanation
Indices: 36762873--36763006 Score: 205
Period size: 54 Copynumber: 2.5 Consensus size: 54
36762863 ATGGAAATCT
* * * *
36762873 TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCAGTATTTC
1 TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTC
36762927 TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTC
* * *
36762981 TACCCTATAGGGGTATTTCAATAATT
1 TACCCTACAAGGGTATTTCGATAATT
36763007 TTGTAAATTG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (54 bp):
TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTC
Found at i:36764266 original size:42 final size:43
Alignment explanation
Indices: 36764207--36764288 Score: 130
Period size: 42 Copynumber: 1.9 Consensus size: 43
36764197 ATGATTTATG
* *
36764207 TGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTTCC
1 TGTAAGACCATGCCTGGGACAGTGGCATCGATATTTGATTTCC
*
36764249 TGTAAGACCCTGCCTGGGACAGTGGCATCGATATTTGATT
1 TGTAAGACCATGCCTGGGACAGTGGCATCGATATTTGATT
36764289 ACATATAAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
42 27 0.75
43 9 0.25
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGCCTGGGACAGTGGCATCGATATTTGATTTCC
Found at i:36772925 original size:29 final size:28
Alignment explanation
Indices: 36772889--36772966 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
36772879 TCATGAGATT
36772889 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
36772919 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
36772946 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
36772967 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:36773240 original size:173 final size:174
Alignment explanation
Indices: 36772919--36773245 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
36772909 AAATTGTACA
* *
36772919 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
36772984 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
36773049 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
36773093 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
36773158 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
36773222 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
36773246 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:36780307 original size:40 final size:40
Alignment explanation
Indices: 36780164--36780379 Score: 339
Period size: 40 Copynumber: 5.5 Consensus size: 40
36780154 TCCTCGTTCA
* * * * *
36780164 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
36780203 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
36780243 ACTGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36780282 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36780322 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36780362 AATGCCTTC-GGACTTAAC
1 AATGCCTTCGGGACTTAAC
36780380 ATTGGAATCC
Statistics
Matches: 166, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 79 0.48
40 87 0.52
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:36780375 original size:79 final size:80
Alignment explanation
Indices: 36780164--36780379 Score: 339
Period size: 79 Copynumber: 2.7 Consensus size: 80
36780154 TCCTCGTTCA
* * * * * *
36780164 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
36780228 TTAACAACTCGCACG
66 TTAACAACTCGCACG
*
36780243 ACTGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
*
36780307 TTAATAACTCGCACG
66 TTAACAACTCGCACG
36780322 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTC-GGACTTAAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAAC
36780380 ATTGGAATCC
Statistics
Matches: 126, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
78 24 0.19
79 63 0.50
80 39 0.31
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
TTAACAACTCGCACG
Found at i:36780430 original size:61 final size:64
Alignment explanation
Indices: 36780321--36780440 Score: 183
Period size: 61 Copynumber: 1.9 Consensus size: 64
36780311 TAACTCGCAC
* *
36780321 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGA-CTTAACATTG
1 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGATCTTAACATTG
* *
36780384 GAAT-CCTTCGGGA-TTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTTAA
1 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGATCTTAA
36780441 TCCGGATATA
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
61 34 0.65
62 14 0.27
63 4 0.08
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (64 bp):
GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGATCTTAACATTG
Found at i:36780471 original size:101 final size:104
Alignment explanation
Indices: 36780281--36780479 Score: 255
Period size: 101 Copynumber: 1.9 Consensus size: 104
36780271 TAACTCGCAC
* *
36780281 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGA
* * *
36780346 TTTAATAACTCGCACGAATGCCTTC-GGACTTAACATTG
66 TATAATAACTAGCACGAAAGCCTTCGGGACTTAACATTG
* * *
36780384 GAAT-CCTTCGGGA-TTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGG
1 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CTTAACCCGG
* *
36780446 ATATATTCACTTAGCAC-AAAGCCTTCGGGACTTA
65 ATATAATAAC-TAGCACGAAAGCCTTCGGGACTTA
36780480 GCCCGGACAG
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
100 3 0.04
101 55 0.66
102 21 0.25
103 4 0.05
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (104 bp):
GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTTAACCCGGA
TATAATAACTAGCACGAAAGCCTTCGGGACTTAACATTG
Found at i:36788275 original size:40 final size:40
Alignment explanation
Indices: 36788177--36788360 Score: 268
Period size: 40 Copynumber: 4.7 Consensus size: 40
36788167 TCCTCGTTCA
* * * * *
36788177 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
36788216 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
36788256 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36788296 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
36788336 AATGCC-TC--GACTTAACCCGGATTTA
1 AATGCCTTCGGGACTTAACCCGGATTTA
36788361 TGCCTTCGGG
Statistics
Matches: 135, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
37 17 0.13
39 36 0.27
40 82 0.61
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:36788363 original size:23 final size:25
Alignment explanation
Indices: 36788337--36788386 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
36788327 ACTCGCACGA
36788337 ATGCC-TC-GACTTAACCCGGATTT
1 ATGCCTTCGGACTTAACCCGGATTT
36788360 ATGCCTTCGGGACTTAACCCGGATTT
1 ATGCCTTC-GGACTTAACCCGGATTT
36788386 A
1 A
36788387 ATAACTCGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 5 0.21
24 2 0.08
26 17 0.71
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (25 bp):
ATGCCTTCGGACTTAACCCGGATTT
Found at i:36792310 original size:24 final size:24
Alignment explanation
Indices: 36792260--36792316 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
36792250 AACCGTATTT
* * *
36792260 GCACACATAGTGCTAATTACACTC
1 GCACACATAGTGCCAAGTAAACTC
36792284 GCACACATAGTGCCATAGTAAAC-C
1 GCACACATAGTGCCA-AGTAAACTC
36792308 GCACACATA
1 GCACACATA
36792317 TTGCATTGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 24 0.83
25 5 0.17
ACGTcount: A:0.37, C:0.30, G:0.14, T:0.19
Consensus pattern (24 bp):
GCACACATAGTGCCAAGTAAACTC
Found at i:36795986 original size:52 final size:50
Alignment explanation
Indices: 36795908--36796100 Score: 161
Period size: 50 Copynumber: 3.7 Consensus size: 50
36795898 ATTGTGAGAA
* * **
36795908 CACATGTGTAGTACTATGTGCAGGCTACTATTTGTTTAAAATGGTTATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAAATGG-T-TAGGT
* * * *
36795960 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTGGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAAATGGTTAGGT
* * * *** * * *
36796010 CGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAAAT-GGTTAGGT
* *
36796061 CACATGTGTGGTAGTACTAAGTGTAGGCTACTATGCGTAC
1 CACA--TGT-GTAGTACTAAGTGCAGGCTACTATGTGTAC
36796101 CCGATAGCTT
Statistics
Matches: 120, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
50 41 0.34
51 9 0.08
52 37 0.31
53 3 0.03
54 30 0.25
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAAATGGTTAGGT
Found at i:36796035 original size:50 final size:51
Alignment explanation
Indices: 36795957--36796139 Score: 206
Period size: 54 Copynumber: 3.5 Consensus size: 51
36795947 AATGGTTATA
* * * *
36795957 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTG
1 GGTCACATGTGTAGTACTAAGTGTAGGCTACTACGCGTACCAGATAGCTTC
* * *
36796007 GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGCTTC
1 GGTCACATGTGTAGTACTAAGTGTAGGCTACTACGCGTACCAGATAGCTTC
* * *
36796058 GATCACATGTGTGGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGCTTC
1 GGTCACA--TGT-GTAGTACTAAGTGTAGGCTACTACGCGTACCAGATAGCTTC
* * * *
36796112 GATCACATGTGTGGTACTATGTGCAGGC
1 GGTCACATGTGTAGTACTAAGTGTAGGC
36796140 CACCGACCAT
Statistics
Matches: 117, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
50 40 0.34
51 23 0.20
52 3 0.03
53 3 0.03
54 48 0.41
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTAAGTGTAGGCTACTACGCGTACCAGATAGCTTC
Found at i:36796084 original size:54 final size:54
Alignment explanation
Indices: 36795967--36796127 Score: 222
Period size: 54 Copynumber: 3.1 Consensus size: 54
36795957 GGTCACATGT
* * * * * * * *
36795967 GTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GGTTGGGTCGCA--TGT-
1 GTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTG
36796017 GTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTG
1 GTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTG
36796071 GTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTG
1 GTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTG
36796125 GTA
1 GTA
36796128 CTATGTGCAG
Statistics
Matches: 99, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
50 31 0.31
51 8 0.08
53 3 0.03
54 57 0.58
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (54 bp):
GTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTG
Found at i:36797597 original size:44 final size:44
Alignment explanation
Indices: 36797532--36797733 Score: 184
Period size: 44 Copynumber: 4.7 Consensus size: 44
36797522 ATGTGATTTT
* * * *
36797532 GTGTAAGAGCACGTTTGGGACGTTGGCATCGACT-TCTGTTTTAC
1 GTGTAAGACCACGTCTAGGACGTTGGCATCGA-TATTTGTTTTAC
36797576 GTGTAAGACCACGTCTAGGACGTTGGCATCGACT-TTTGTTTTAC
1 GTGTAAGACCACGTCTAGGACGTTGGCATCGA-TATTTGTTTTAC
* * * *
36797620 GTGTAAGACCATGTCTAGGACATCGGCATCG-TATATGTTTT-C
1 GTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGTTTTAC
* * * *
36797662 GTGTAAGGCC-CTGTCTAGGATAG-TGGCATCGATGTTTG-ATTAC
1 GTGTAAGACCAC-GTCTAGGA-CGTTGGCATCGATATTTGTTTTAC
* * *
36797705 ATGTAAGACCACGTCTGGGACATTGGCAT
1 GTGTAAGACCACGTCTAGGACGTTGGCAT
36797734 TGTATGAACT
Statistics
Matches: 130, Mismatches: 21, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
42 28 0.22
43 33 0.25
44 69 0.53
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (44 bp):
GTGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGTTTTAC
Found at i:36797680 original size:86 final size:86
Alignment explanation
Indices: 36797568--36797738 Score: 206
Period size: 85 Copynumber: 2.0 Consensus size: 86
36797558 CATCGACTTC
* * *
36797568 TGTTTTACGTGTAAGACCACGTCTAGGA-CGTTGGCATCGACT-TTTGTTTTACGTGTAAGACCA
1 TGTTTTACGTGTAAGACCACGTCTAGGATAG-TGGCATCGA-TGTTTG-ATTACATGTAAGACCA
*
36797631 TGTCTAGGACATCGGCATCGTATA
63 CGTCTAGGACATCGGCATCGTATA
*
36797655 TGTTTT-CGTGTAAGGCC-CTGTCTAGGATAGTGGCATCGATGTTTGATTACATGTAAGACCACG
1 TGTTTTACGTGTAAGACCAC-GTCTAGGATAGTGGCATCGATGTTTGATTACATGTAAGACCACG
* * *
36797718 TCTGGGACATTGGCATTGTAT
65 TCTAGGACATCGGCATCGTAT
36797739 GAACTCTCTG
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
85 35 0.48
86 31 0.42
87 7 0.10
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (86 bp):
TGTTTTACGTGTAAGACCACGTCTAGGATAGTGGCATCGATGTTTGATTACATGTAAGACCACGT
CTAGGACATCGGCATCGTATA
Found at i:36802951 original size:46 final size:45
Alignment explanation
Indices: 36802884--36803058 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
36802874 TGTAACCTGC
* *
36802884 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGTAT
*
36802930 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTAGTAT
* *** * * * * * * *
36802976 ACATCTCTCGAACTCGGACTCAACTTAATGAGTTCAGACATTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTAGTAT
*
36803023 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
36803059 ATGCCCAAAC
Statistics
Matches: 102, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 67 0.66
47 32 0.31
48 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTAGTAT
Found at i:36803078 original size:46 final size:46
Alignment explanation
Indices: 36802889--36803078 Score: 126
Period size: 46 Copynumber: 4.1 Consensus size: 46
36802879 CCTGCCCATA
* * *
36802889 AGTGAACTCAGACTCAACTCAACGAGCTCGG--GCGT-T-CGTATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATAC--ATCC-T
*
36802934 AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTA--TACATC-CT
* * * * * * *
36802984 --CGAACTCGGACTCAACTTAATGAGTTCAGA--CATTTGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCC-T
* *
36803027 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
36803074 AGTGA
1 AGTGA
36803079 CATATCACTT
Statistics
Matches: 112, Mismatches: 19, Indels: 26
0.71 0.12 0.17
Matches are distributed among these distances:
42 1 0.01
43 6 0.05
45 2 0.02
46 61 0.54
47 26 0.23
48 9 0.08
50 4 0.04
51 2 0.02
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTATACATCCT
Found at i:36805115 original size:23 final size:23
Alignment explanation
Indices: 36805085--36805130 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
36805075 AAACCAGCCG
36805085 AGTAAGACTTTTCTGGGATTATT
1 AGTAAGACTTTTCTGGGATTATT
36805108 AGTAAGACTTTTCTGGGATTATT
1 AGTAAGACTTTTCTGGGATTATT
36805131 TGATTATGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (23 bp):
AGTAAGACTTTTCTGGGATTATT
Found at i:36806763 original size:52 final size:50
Alignment explanation
Indices: 36806687--36806814 Score: 139
Period size: 52 Copynumber: 2.5 Consensus size: 50
36806677 GTGAGAACAC
* * ** *
36806687 GTGTAGTACTATGTGCAGGCTACTATATGTTTAAAATGGTTATAGGTCACGT
1 GTGTAGTACTAAGTGTAGGCTACTATATGTACAAAATGGTTA-A-GTCACAT
* ** * * *
36806739 GTGTAGTACTAAGTGTAGGATACTACGTGTACCAGATGGTTAAGTCGCAT
1 GTGTAGTACTAAGTGTAGGCTACTATATGTACAAAATGGTTAAGTCACAT
36806789 GTGTAGTACTAAGTGTAGGCTACTAT
1 GTGTAGTACTAAGTGTAGGCTACTAT
36806815 GCATACCTGA
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
50 29 0.46
51 1 0.02
52 33 0.52
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (50 bp):
GTGTAGTACTAAGTGTAGGCTACTATATGTACAAAATGGTTAAGTCACAT
Found at i:36815301 original size:53 final size:54
Alignment explanation
Indices: 36815233--36815436 Score: 191
Period size: 53 Copynumber: 3.8 Consensus size: 54
36815223 TCCTTTTTAA
* * *
36815233 ACTTACCATTTCCATGTCTTGACATGGTCTTACCTGGTATCCTTTCCTTAT-GT
1 ACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTATAGT
* * * *
36815286 ACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGAT-CTTTGCCTTATCGT
1 ACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTT-CCTTATAGT
* * * * * * * **
36815340 AGTTTATCA--GCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTGTAAA
1 A-CTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTATAGT
* * *
36815393 ACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 ACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
36815437 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 26, Indels: 11
0.76 0.17 0.07
Matches are distributed among these distances:
52 9 0.08
53 71 0.60
54 35 0.29
55 4 0.03
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.39
Consensus pattern (54 bp):
ACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTTCCTTATAGT
Found at i:36821949 original size:23 final size:23
Alignment explanation
Indices: 36821922--36822019 Score: 101
Period size: 24 Copynumber: 4.3 Consensus size: 23
36821912 ACAGCTCGTA
*
36821922 AGAGCTTACTATTTCAGCTCATT
1 AGAGCTTACTATTTCAGCTCAAT
* * *
36821945 GGAGCTTACCAATTT-AGCTCAAA
1 AGAGCTTA-CTATTTCAGCTCAAT
*
36821968 AGATCTTACTA-TTCAGCTCAAT
1 AGAGCTTACTATTTCAGCTCAAT
* *
36821990 AGAGCTTACCATTTTTAGCTCAAT
1 AGAGCTTACTA-TTTCAGCTCAAT
36822014 AGAGCT
1 AGAGCT
36822020 CACCGACCAT
Statistics
Matches: 60, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.03
22 18 0.30
23 19 0.32
24 21 0.35
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (23 bp):
AGAGCTTACTATTTCAGCTCAAT
Found at i:36821995 original size:45 final size:47
Alignment explanation
Indices: 36821921--36822019 Score: 139
Period size: 46 Copynumber: 2.1 Consensus size: 47
36821911 TACAGCTCGT
* *
36821921 AAGAGCTTACTATTTCAGCTCATTGGAGCTTACCA-ATTTAGCTCAA
1 AAGAGCTTACTATTTCAGCTCAATAGAGCTTACCATATTTAGCTCAA
* *
36821967 AAGATCTTACTA-TTCAGCTCAATAGAGCTTACCATTTTTAGCTCAA
1 AAGAGCTTACTATTTCAGCTCAATAGAGCTTACCATATTTAGCTCAA
*
36822013 TAGAGCT
1 AAGAGCT
36822020 CACCGACCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
45 20 0.43
46 26 0.57
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.33
Consensus pattern (47 bp):
AAGAGCTTACTATTTCAGCTCAATAGAGCTTACCATATTTAGCTCAA
Found at i:36824711 original size:28 final size:27
Alignment explanation
Indices: 36824625--36824714 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
36824615 GTGACAGAGT
*
36824625 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* ** *
36824654 CACCAGAATAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
36824681 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
36824709 CACCAG
1 CACCAG
36824715 GACGATTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:36824867 original size:28 final size:28
Alignment explanation
Indices: 36824820--36824883 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
36824810 AAATTAACCC
* *
36824820 TAGGGGTATAGAGGTCATTTTGCATACA
1 TAGGGGTATAGAGGTAATTTTGAATACA
36824848 TAGGGGTATA-ATGGTAATTTTGAATACA
1 TAGGGGTATAGA-GGTAATTTTGAATACA
36824876 TAGGGGTA
1 TAGGGGTA
36824884 CTCTAGTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 32 0.97
ACGTcount: A:0.31, C:0.06, G:0.30, T:0.33
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTGAATACA
Found at i:36832031 original size:47 final size:47
Alignment explanation
Indices: 36831977--36832397 Score: 626
Period size: 47 Copynumber: 9.0 Consensus size: 47
36831967 TTAGGATTTT
** *
36831977 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36832024 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36832071 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36832118 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
36832165 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCTGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36832212 ATGTGATGAATGTGAACATGCATATATGTGATGAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
36832259 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36832306 ATGTGATGAATGTGATCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
36832353 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGTCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
36832398 TAGTGTGAAA
Statistics
Matches: 335, Mismatches: 39, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 335 1.00
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36832079 original size:25 final size:25
Alignment explanation
Indices: 36832004--36832079 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
36831994 GTGTATATAT
36832004 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
36832029 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
36832051 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
36832076 GTGA
1 GTGA
36832080 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:36832610 original size:37 final size:37
Alignment explanation
Indices: 36832560--36832711 Score: 232
Period size: 37 Copynumber: 4.1 Consensus size: 37
36832550 GGAAATATAT
* * * *
36832560 TCCGGGTGAGACCCGATGAGTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
36832597 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
36832634 TCCGGATAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
36832671 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
36832708 TCCG
1 TCCG
36832712 AGTTAAAGGT
Statistics
Matches: 106, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 106 1.00
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:36834535 original size:40 final size:40
Alignment explanation
Indices: 36833973--36834523 Score: 834
Period size: 40 Copynumber: 13.8 Consensus size: 40
36833963 GAGAATTGAG
* *
36833973 AGTGATATGTCCGGGCTAAATCCCGGAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
36834013 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
36834053 AGTGATGTATCCGGGCT-AATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
36834092 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* *
36834132 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
36834172 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
36834212 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
36834252 AGTGATATATCCGGGCTAAATCACGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
36834292 GGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * * *
36834332 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * * *
36834372 AGTGATGTATTCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
36834412 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
36834452 AGTGATATATCCGTGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * **
36834492 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCA
36834524 ATCATGCTGG
Statistics
Matches: 474, Mismatches: 36, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 0.08
40 436 0.92
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
Found at i:36838576 original size:47 final size:47
Alignment explanation
Indices: 36838523--36838755 Score: 349
Period size: 47 Copynumber: 5.0 Consensus size: 47
36838513 TTAGGATTTT
**
36838523 ATGTGATGAATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36838570 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
36838617 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
36838664 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
36838711 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
36838756 TAGTGTGAAA
Statistics
Matches: 166, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 166 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:36838763 original size:94 final size:94
Alignment explanation
Indices: 36838523--36838755 Score: 403
Period size: 94 Copynumber: 2.5 Consensus size: 94
36838513 TTAGGATTTT
* * **
36838523 ATGTGATGAATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
36838588 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
*
36838617 ATGTGGTGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
36838682 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATGTGTGATAAGGCCGAATGGCCA
* *
36838711 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGC
36838756 TAGTGTGAAA
Statistics
Matches: 131, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 131 1.00
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.27
Consensus pattern (94 bp):
ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCA
TGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:36838968 original size:37 final size:37
Alignment explanation
Indices: 36838918--36839063 Score: 211
Period size: 37 Copynumber: 3.9 Consensus size: 37
36838908 GGAAATATAT
* * *
36838918 TCCGGGTGAGACCCAATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
*
36838955 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
* *
36838992 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
* * *
36839029 TCCAGGTAAGACCCAATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCAATGACTACGTGTGGAGATTT
36839064 CGTCTGAGAT
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCAATGACTACGTGTGGAGATTTTG
Found at i:36848954 original size:51 final size:49
Alignment explanation
Indices: 36848848--36849016 Score: 178
Period size: 49 Copynumber: 3.4 Consensus size: 49
36848838 CCGATACACG
** * * *
36848848 TAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGTCC-GCACT
1 TAGTACTACACACGTGACC-AATTATCCGGTACACATAGTAG-CCTGCACT
** * *
36848898 TAGTACTACACACGTGATTGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
*** *
36848949 TAGTACTACACATACGACCAATTATCCGGTACACGTAGTAGCCTGCACT
1 TAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACT
36848998 TAGTACTACACACGTGACC
1 TAGTACTACACACGTGACC
36849017 TCACAATAGA
Statistics
Matches: 97, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
49 41 0.42
50 23 0.24
51 33 0.34
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTGCACT
Done.