Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 114 of 325
Found at i:36849446 original size:18 final size:18
Alignment explanation
Indices: 36849423--36849458 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
36849413 TTTTCCCCAA
36849423 GGTTCAAAAATTAAACTT
1 GGTTCAAAAATTAAACTT
36849441 GGTTCAAAAATTAAACTT
1 GGTTCAAAAATTAAACTT
36849459 CTTCCTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33
Consensus pattern (18 bp):
GGTTCAAAAATTAAACTT
Found at i:36860309 original size:43 final size:43
Alignment explanation
Indices: 36860247--36860411 Score: 103
Period size: 43 Copynumber: 3.9 Consensus size: 43
36860237 GGCAATGTCA
* *
36860247 ATGTCCCAGA-CGTGGTCTTACATGTAAA-CAAATATCGATGCC
1 ATGTCCCAGATAG-GGTCTTACATGAAAACCAAATATCGATGCC
* *
36860289 ATTGTCCCAGATAGGGTCTTACA-CAAAATCAAATA-CGATGCC
1 A-TGTCCCAGATAGGGTCTTACATGAAAACCAAATATCGATGCC
* * * * * * *
36860331 GATAT-CTAGAGATGGTCTTACACGTAAACCATAA-GTCGATGCC
1 -ATGTCCCAGATAGGGTCTTACATGAAAACCA-AATATCGATGCC
* *
36860374 AACGTCCCAGAT-GTGGTCTTACATGAAAA-CACATATCG
1 -ATGTCCCAGATAG-GGTCTTACATGAAAACCAAATATCG
36860412 GATCCTATGT
Statistics
Matches: 92, Mismatches: 21, Indels: 19
0.70 0.16 0.14
Matches are distributed among these distances:
41 14 0.15
42 19 0.21
43 41 0.45
44 18 0.20
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (43 bp):
ATGTCCCAGATAGGGTCTTACATGAAAACCAAATATCGATGCC
Found at i:36865048 original size:40 final size:40
Alignment explanation
Indices: 36865019--36865154 Score: 211
Period size: 40 Copynumber: 3.4 Consensus size: 40
36865009 CTAATAGCTA
36865019 CACGTATGTGCATTCAAGGGTACCGAAGTACAAACAGGGG
1 CACGTATGTGCATTCAAGGGTACCGAAGTACAAACAGGGG
*
36865059 TACGTATGTGCATTCAAGGGTACCGAAGTACAAACAGGGG
1 CACGTATGTGCATTCAAGGGTACCGAAGTACAAACAGGGG
* *
36865099 CACGTATGTGCATTTAAGGGTA-CGAAAGTACAAATAGGGG
1 CACGTATGTGCATTCAAGGGTACCG-AAGTACAAACAGGGG
* *
36865139 TACGTATGTGAATTCA
1 CACGTATGTGCATTCA
36865155 GACGATAATT
Statistics
Matches: 88, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.02
40 86 0.98
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (40 bp):
CACGTATGTGCATTCAAGGGTACCGAAGTACAAACAGGGG
Found at i:36865061 original size:20 final size:20
Alignment explanation
Indices: 36865036--36865098 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
36865026 GTGCATTCAA
36865036 GGGTACCGAAGTACAAACAG
1 GGGTACCGAAGTACAAACAG
* * ** *
36865056 GGGTA-CGTATGTGCATTCAA
1 GGGTACCG-AAGTACAAACAG
36865076 GGGTACCGAAGTACAAACAG
1 GGGTACCGAAGTACAAACAG
36865096 GGG
1 GGG
36865099 CACGTATGTG
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
19 2 0.06
20 27 0.87
21 2 0.06
ACGTcount: A:0.33, C:0.17, G:0.33, T:0.16
Consensus pattern (20 bp):
GGGTACCGAAGTACAAACAG
Found at i:36869068 original size:29 final size:29
Alignment explanation
Indices: 36868998--36869109 Score: 120
Period size: 29 Copynumber: 3.9 Consensus size: 29
36868988 ACCCCTACAT
* * *
36868998 ACATGCATATGGCCCCCTTGGCCCAA-TC
1 ACATTCATATGGCCCACTAGGCCCAATTC
* *
36869026 TCATTCATATGGCCCATCT-GGCCCAGTTC
1 ACATTCATATGGCCCA-CTAGGCCCAATTC
* *
36869055 ATATTCTTATGGCCCACTAGGCCCAATTC
1 ACATTCATATGGCCCACTAGGCCCAATTC
* *
36869084 ACATTCATATGGCCTATTAGGCCCAA
1 ACATTCATATGGCCCACTAGGCCCAA
36869110 ATCATATTAT
Statistics
Matches: 69, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
28 21 0.30
29 48 0.70
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAATTC
Found at i:36869107 original size:58 final size:57
Alignment explanation
Indices: 36869005--36869117 Score: 147
Period size: 58 Copynumber: 2.0 Consensus size: 57
36868995 CATACATGCA
* * * **
36869005 TATGGCCCCCTTGGCCCAATCTCATTCATATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCACATTCATATGGCCCATCTGGCCCAAATCATATTCT
*
36869062 TATGGCCCACTAGGCCCAATTCACATTCATATGGCCTAT-TAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCACATTCATATGGCCCATCT-GGCCCAAATCATATT
36869118 ATACTCATGC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 18 0.38
58 30 0.62
ACGTcount: A:0.23, C:0.32, G:0.15, T:0.30
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCATATGGCCCATCTGGCCCAAATCATATTCT
Found at i:36869220 original size:10 final size:9
Alignment explanation
Indices: 36869190--36869228 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
36869180 GGGCAAAAAA
*
36869190 CCCATTAGG
1 CCCATTTGG
*
36869199 CCCATTTAG
1 CCCATTTGG
36869208 CCCATTCTGG
1 CCCATT-TGG
36869218 CCCATTTGG
1 CCCATTTGG
36869227 CC
1 CC
36869229 AATTCTAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.15, C:0.38, G:0.18, T:0.28
Consensus pattern (9 bp):
CCCATTTGG
Found at i:36869221 original size:19 final size:19
Alignment explanation
Indices: 36869197--36869234 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
36869187 AAACCCATTA
*
36869197 GGCCCATTTAGCCCATTCT
1 GGCCCATTTAGCCAATTCT
*
36869216 GGCCCATTTGGCCAATTCT
1 GGCCCATTTAGCCAATTCT
36869235 AAACCCATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.34, G:0.18, T:0.32
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCT
Found at i:36869344 original size:8 final size:8
Alignment explanation
Indices: 36869331--36869366 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
36869321 GTAGCGCAAC
*
36869331 TTTCGGCT
1 TTTCGGCA
36869339 TTTCGGCA
1 TTTCGGCA
*
36869347 TTTTGGCA
1 TTTCGGCA
36869355 TTTCGGCA
1 TTTCGGCA
36869363 TTTC
1 TTTC
36869367 AACTTTTGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.08, C:0.22, G:0.22, T:0.47
Consensus pattern (8 bp):
TTTCGGCA
Found at i:36870633 original size:16 final size:16
Alignment explanation
Indices: 36870608--36870639 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36870598 AAGTTCAGGA
36870608 TTTCAAGATTTTTGGG
1 TTTCAAGATTTTTGGG
*
36870624 TTTCAGGATTTTTGGG
1 TTTCAAGATTTTTGGG
36870640 GCTTTAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.28, T:0.50
Consensus pattern (16 bp):
TTTCAAGATTTTTGGG
Found at i:36878194 original size:27 final size:28
Alignment explanation
Indices: 36878164--36878225 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 28
36878154 GTGACGAAGT
*
36878164 CACCAGATACAGATAT-TGTGGCTAGGC
1 CACCAGATACAGATATATGTGGCGAGGC
36878191 CACCAGA-ACAGATATATGTGGCGAGGC
1 CACCAGATACAGATATATGTGGCGAGGC
36878218 CACCAGAT
1 CACCAGAT
36878226 TGTAGTGAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 8 0.25
27 24 0.75
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.18
Consensus pattern (28 bp):
CACCAGATACAGATATATGTGGCGAGGC
Found at i:36878869 original size:27 final size:27
Alignment explanation
Indices: 36878846--36878930 Score: 109
Period size: 27 Copynumber: 3.1 Consensus size: 27
36878836 ATTGGTAGTC
* *
36878846 CTACCCTACAGGGGTATTTCGGTATTT
1 CTACCTTACAGGGGTATTTCGGTAATT
* * *
36878873 CTATCTTACAAGGGTATTTCGATAATT
1 CTACCTTACAGGGGTATTTCGGTAATT
36878900 CTACCTTACAGGGGTATTTTC-GTAATT
1 CTACCTTACAGGGGTA-TTTCGGTAATT
36878927 CTAC
1 CTAC
36878931 AACTTATCTA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 45 0.92
28 4 0.08
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.39
Consensus pattern (27 bp):
CTACCTTACAGGGGTATTTCGGTAATT
Found at i:36887711 original size:39 final size:40
Alignment explanation
Indices: 36887668--36887762 Score: 174
Period size: 40 Copynumber: 2.4 Consensus size: 40
36887658 GACTTATAGT
*
36887668 CCGCAAGC-TTGTGCTGGTAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
36887707 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
36887747 CCGCAGGCTTTGTGCT
1 CCGCAGGCTTTGTGCT
36887763 AGAAATTAGA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 7 0.13
40 47 0.87
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
Found at i:36891791 original size:29 final size:28
Alignment explanation
Indices: 36891723--36891819 Score: 72
Period size: 29 Copynumber: 3.4 Consensus size: 28
36891713 TTACATACAC
36891723 GCCCACTAGGCCTAATCTCATTCGTATG
1 GCCCACTAGGCCTAATCTCATTCGTATG
* * *
36891751 ACCCATCT-GGCCTAGT-TCATATTGTTATG
1 GCCCA-CTAGGCCTAATCTCAT-TCG-TATG
* * * *
36891780 GCCCACTAGGCCCAATTCACATTCATAAG
1 GCCCACTAGGCCTAA-TCTCATTCGTATG
*
36891809 GCCCATTAGGC
1 GCCCACTAGGC
36891820 AAAAATCATA
Statistics
Matches: 52, Mismatches: 11, Indels: 11
0.70 0.15 0.15
Matches are distributed among these distances:
27 4 0.08
28 15 0.29
29 28 0.54
30 2 0.04
31 3 0.06
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.28
Consensus pattern (28 bp):
GCCCACTAGGCCTAATCTCATTCGTATG
Found at i:36892090 original size:16 final size:16
Alignment explanation
Indices: 36892055--36892090 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
36892045 ATTTTTGGAT
* *
36892055 TTTCAGCTTTTTGACT
1 TTTCAGCTTTTCGACA
36892071 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
36892087 TTTC
1 TTTC
36892091 GGCATTTCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.22, G:0.11, T:0.53
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:36893700 original size:28 final size:28
Alignment explanation
Indices: 36893635--36893760 Score: 171
Period size: 28 Copynumber: 4.5 Consensus size: 28
36893625 ATGAGATTGG
* * ** *
36893635 CACTAAGTGTGCGGGTTTAAATTGCATAG
1 CACTAAGTGTGCGAGTTT-GATTATATAA
* *
36893664 CACTAAGTGTGCAAGTTTGATTATATAG
1 CACTAAGTGTGCGAGTTTGATTATATAA
*
36893692 CACTAAGTGTGCGAGTTTGATTATGTAA
1 CACTAAGTGTGCGAGTTTGATTATATAA
36893720 CACTAAGTGTGCGAGTTTGATTATATAA
1 CACTAAGTGTGCGAGTTTGATTATATAA
36893748 CACTAAGTGTGCG
1 CACTAAGTGTGCG
36893761 GACTTACTAT
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 72 0.82
29 16 0.18
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGATTATATAA
Found at i:36901728 original size:28 final size:28
Alignment explanation
Indices: 36901662--36901789 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
36901652 CATGAGATTG
* * **
36901662 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
36901691 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
36901719 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
36901748 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
36901776 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
36901790 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:36901751 original size:57 final size:57
Alignment explanation
Indices: 36901662--36901789 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
36901652 CATGAGATTG
*
36901662 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
36901719 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
36901776 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
36901790 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:36904492 original size:40 final size:40
Alignment explanation
Indices: 36904437--36904651 Score: 339
Period size: 40 Copynumber: 5.5 Consensus size: 40
36904427 CGGATGATAA
*
36904437 CCGGGCTAAGTCCCGATGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
36904477 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36904517 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
36904557 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
36904597 CC-GGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
36904636 -C-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
36904652 TTACTTGGTT
Statistics
Matches: 167, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
38 17 0.10
39 33 0.20
40 117 0.70
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:36907577 original size:27 final size:26
Alignment explanation
Indices: 36907521--36907577 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
36907511 CAACCTTAAC
* *
36907521 CCTAGGGGTATAACAGAAATTTTGCT
1 CCTAGGGGTATAACAGAAATTTTCCA
*
36907547 CCTAGGGGTA-AATCTGTAAATTTTCCA
1 CCTAGGGGTATAA-CAG-AAATTTTCCA
36907574 CCTA
1 CCTA
36907578 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 2 0.08
26 12 0.46
27 12 0.46
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
CCTAGGGGTATAACAGAAATTTTCCA
Found at i:36908836 original size:12 final size:11
Alignment explanation
Indices: 36908782--36908841 Score: 52
Period size: 12 Copynumber: 5.5 Consensus size: 11
36908772 GGCTAAGGAG
36908782 GAAAAGAAGAA
1 GAAAAGAAGAA
* *
36908793 GAGAAAGTAGAT
1 GA-AAAGAAGAA
* *
36908805 GGAGAGAA-AA
1 GAAAAGAAGAA
36908815 GAAAAG-AGAA
1 GAAAAGAAGAA
36908825 GAAGAAGAAGAA
1 GAA-AAGAAGAA
36908837 GAAAA
1 GAAAA
36908842 AACTGAATCC
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
9 1 0.03
10 10 0.27
11 11 0.30
12 15 0.41
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (11 bp):
GAAAAGAAGAA
Found at i:36909802 original size:25 final size:26
Alignment explanation
Indices: 36909747--36909808 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 26
36909737 AAAATAATTA
*
36909747 TAATAATAATAATTTTATAAATATATC
1 TAATAATAA-AAATTTATAAATATATC
* * *
36909774 TAATCATAAAAATTTA-AAATATCTG
1 TAATAATAAAAATTTATAAATATATC
36909799 TAATAATAAA
1 TAATAATAAA
36909809 TACAGTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 16 0.53
26 6 0.20
27 8 0.27
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (26 bp):
TAATAATAAAAATTTATAAATATATC
Found at i:36910580 original size:30 final size:30
Alignment explanation
Indices: 36910545--36910608 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
36910535 CAACTTTTAT
*
36910545 AATTCTGATAACAATACTGTAGTACTTTTG
1 AATTCTGATAACAATACTGTAGTACTTTCG
** *
36910575 AATTCTGATAACGGTATTGTAGTACTTTCG
1 AATTCTGATAACAATACTGTAGTACTTTCG
36910605 AATT
1 AATT
36910609 TCTGTCAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (30 bp):
AATTCTGATAACAATACTGTAGTACTTTCG
Found at i:36912634 original size:42 final size:43
Alignment explanation
Indices: 36912552--36912645 Score: 127
Period size: 42 Copynumber: 2.2 Consensus size: 43
36912542 TCCCAGATGT
** * *
36912552 GGTCTTACATGTTATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACATGAAATCAAATATCGATGCCAATATCCCAGACAG
* *
36912595 GGTCTTACATGAAATCATATAT-GATGCCAATATCCCAGACAT
1 GGTCTTACATGAAATCAAATATCGATGCCAATATCCCAGACAG
36912637 GGTCTTACA
1 GGTCTTACA
36912646 CATCAATCAC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
42 26 0.58
43 19 0.42
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGCCAATATCCCAGACAG
Found at i:36912689 original size:43 final size:44
Alignment explanation
Indices: 36912533--36912689 Score: 139
Period size: 43 Copynumber: 3.7 Consensus size: 44
36912523 AGCTCGTACA
** **
36912533 ATGCCAACGTCCCAGATGTGGTCTT--ACATGTTATCA-AATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACATGAAATCACAA-AT-G
* * *
36912576 ATGCC-ACTGTCCCAGACAGGGTCTT--ACATGAAATCATATATG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACATGAAATCACAAATG
** *
36912618 ATGCCAATATCCCAGACATGGTCTTACACAT-CAATCACAAATG
1 ATGCCAACGTCCCAGACATGGTCTTACACATGAAATCACAAATG
*
36912661 ATGCTAACGTCCCAGACATGGTCTTACAC
1 ATGCCAACGTCCCAGACATGGTCTTACAC
36912690 GATAACACAC
Statistics
Matches: 94, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 23 0.24
43 66 0.70
44 5 0.05
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACATGAAATCACAAATG
Found at i:36916096 original size:23 final size:22
Alignment explanation
Indices: 36916044--36916096 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
36916034 TCCACGTCTT
*
36916044 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
36916066 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
36916089 TTTCTTTT
1 TTTCTTTT
36916097 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:36919782 original size:98 final size:97
Alignment explanation
Indices: 36919662--36919842 Score: 254
Period size: 98 Copynumber: 1.9 Consensus size: 97
36919652 CATCAAAGTT
* * *
36919662 GATGCCATGTCCCAAACAGGTCTTACACTAACTTCCATATATCTAGGCTGATGCCGTGTCCTAGA
1 GATGCCATGTCCCAAACAGGTCTTACACTAACTTCCATATATCGAGGCCGATG-CATGTCCTAGA
*
36919727 CAAGTCTTACACTGGCTCTCATCCATTGGTGTC
65 CAAGTCTTACACTAGCTCTCATCCATTGGTGTC
* * ** * *
36919760 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCTTAGAC
1 GATGCCATGTCCCAAACAGGTCTTACACTAACTTCCATATATCGAGGCCGATGCATGTCCTAGAC
*
36919825 ATGTCTTACACTAGCTCT
66 AAGTCTTACACTAGCTCT
36919843 TGTTTCAATG
Statistics
Matches: 72, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
97 26 0.36
98 46 0.64
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (97 bp):
GATGCCATGTCCCAAACAGGTCTTACACTAACTTCCATATATCGAGGCCGATGCATGTCCTAGAC
AAGTCTTACACTAGCTCTCATCCATTGGTGTC
Found at i:36919812 original size:49 final size:46
Alignment explanation
Indices: 36919662--36919913 Score: 159
Period size: 49 Copynumber: 5.2 Consensus size: 46
36919652 CATCAAAGTT
* * * * *
36919662 GATGCCATGTCCCAAACAGGTCTTACACTAACTTCCATATATCTAGGCT
1 GATG-CATGTCCCAGACAGGTCTTACACTAGCTT-TATAT-TCGAGGCC
* * * * * *
36919711 GATGCCGTGTCCTAGACAAGTCTTACACTGGCTCTCATCCATT-G-GTGTC
1 GATG-CATGTCCCAGACAGGTCTTACACTAGCT-TTAT--ATTCGAG-GCC
36919760 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCC
1 GATG-CATGTCCCAGACAGGTCTTACACTAGCTT-TATAT-TCGAGGCC
** * * * *
36919809 GATGCATGTCTTAGACATGTCTTACACTAGCTCTTGT-TTCAATGCC
1 GATGCATGTCCCAGACAGGTCTTACACTAGCT-TTATATTCGAGGCC
* * * *
36919855 GATGCATGTCCCAGACATGTTTTACACTGGCTGGTATATCTCGAGGCC
1 GATGCATGTCCCAGACAGGTCTTACACTAGCT-TTATAT-TCGAGGCC
*
36919903 AATGCATGTCC
1 GATGCATGTCC
36919914 TAAAAATTTA
Statistics
Matches: 161, Mismatches: 31, Indels: 23
0.75 0.14 0.11
Matches are distributed among these distances:
46 36 0.22
47 4 0.02
48 46 0.29
49 70 0.43
50 3 0.02
51 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
GATGCATGTCCCAGACAGGTCTTACACTAGCTTTATATTCGAGGCC
Found at i:36919831 original size:48 final size:48
Alignment explanation
Indices: 36919759--36919913 Score: 181
Period size: 48 Copynumber: 3.2 Consensus size: 48
36919749 CCATTGGTGT
*
36919759 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGC
** * * *
36919808 CGATGCATGTCTTAGACATGTCTTACACTAGCTCT-TGT-T-TCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGAGGC
* * *
36919854 CGATGCATGTCCCAGACATGTTTTACACTGGCTGGTATATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGC
*
36919902 CAATGCATGTCC
1 CGATGCATGTCC
36919914 TAAAAATTTA
Statistics
Matches: 87, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
46 36 0.41
47 2 0.02
48 43 0.49
49 6 0.07
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.30
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGC
Found at i:36919928 original size:94 final size:94
Alignment explanation
Indices: 36919759--36919979 Score: 250
Period size: 94 Copynumber: 2.3 Consensus size: 94
36919749 CCATTGGTGT
* * * * * *
36919759 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGCATGTCTTAGA
1 CGATG-CATGTCCCAGACATGTTTTACACTAGCTGGTATATCTCGAGGCCAATGCATGTCCTAAA
* * ** *
36919824 CATGTCTTACACTAGCTCT-TGTTTCAAT-GC
65 AATGTATTACACTAGCTCTCAATATC--TGGC
*
36919854 CGATGCATGTCCCAGACATGTTTTACACTGGCTGGTATATCTCGAGGCCAATGCATGTCCTAAAA
1 CGATGCATGTCCCAGACATGTTTTACACTAGCTGGTATATCTCGAGGCCAATGCATGTCCTAAAA
* *
36919919 ATTTATTACACTGGCTCTCAATATCTGGC
66 ATGTATTACACTAGCTCTCAATATCTGGC
*
36919948 C-AGTGCATGTCCCAGACATGTTTTACATTAGC
1 CGA-TGCATGTCCCAGACATGTTTTACACTAGC
36919980 ACACATATCA
Statistics
Matches: 107, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
93 2 0.02
94 97 0.91
95 8 0.07
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.31
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGTTTTACACTAGCTGGTATATCTCGAGGCCAATGCATGTCCTAAAA
ATGTATTACACTAGCTCTCAATATCTGGC
Found at i:36919974 original size:46 final size:46
Alignment explanation
Indices: 36919765--36919974 Score: 142
Period size: 46 Copynumber: 4.5 Consensus size: 46
36919755 GTGTCGATGC
* * * *
36919765 CATGTCCCAGACAGGTCTTACACTAGCTTG-TATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTTTTACACTGGC-TGCTATATCT--AGGCCAATG
** * * * * * * *
36919813 CATGTCTTAGACATGTCTTACACTAGCT-CTTGTTTCAATGCCGATG
1 CATGTCCCAGACATGTTTTACACTGGCTGC-TATATCTAGGCCAATG
*
36919859 CATGTCCCAGACATGTTTTACACTGGCTGGTATATCTCGAGGCCAATG
1 CATGTCCCAGACATGTTTTACACTGGCTGCTATATCT--AGGCCAATG
* * * *
36919907 CATGTCCTAAAAAT-TTATTACACTGGCT-CTCAATATCT-GGCCAGTG
1 CATGTCCCAGACATGTT-TTACACTGGCTGCT--ATATCTAGGCCAATG
36919953 CATGTCCCAGACATGTTTTACA
1 CATGTCCCAGACATGTTTTACA
36919975 TTAGCACACA
Statistics
Matches: 128, Mismatches: 25, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
46 59 0.46
47 6 0.05
48 57 0.45
49 6 0.05
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.31
Consensus pattern (46 bp):
CATGTCCCAGACATGTTTTACACTGGCTGCTATATCTAGGCCAATG
Found at i:36922437 original size:18 final size:18
Alignment explanation
Indices: 36922414--36922448 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36922404 TTCCTGGGTG
*
36922414 GTAGTCGATTATCAACTT
1 GTAGTCCATTATCAACTT
*
36922432 GTAGTCCTTTATCAACT
1 GTAGTCCATTATCAACT
36922449 CCAACCATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (18 bp):
GTAGTCCATTATCAACTT
Found at i:36927017 original size:46 final size:48
Alignment explanation
Indices: 36926806--36927037 Score: 190
Period size: 46 Copynumber: 4.9 Consensus size: 48
36926796 CACACAACAA
* *
36926806 GCTGATGCCATGTCCCAGACAGGTCTTACACTAGCT-TGTATATCTCGAG
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTCT-CATATCTCGAG
* * * * * *
36926855 GCTGATGCATATCCCTGACATGTCTTACACTATCTCTC--GTCTCAAT
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCTCGAG
* * * * *
36926901 GCCGATGCATGTCCCAAACATGTTTTACA-TAGGCTGGT-ATATCTTGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTA-GCT-CTCATATCTCGAG
* * * * * *
36926949 GCCGATGTATGTCCTAGTCATGTCTTACACTAGCTCTCA-ATAT-GTG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCTCGAG
* *
36926995 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACACATATC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATC
36927038 ACCCGATGTC
Statistics
Matches: 141, Mismatches: 34, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
45 2 0.01
46 66 0.47
47 7 0.05
48 56 0.40
49 10 0.07
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (48 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCTCGAG
Found at i:36927037 original size:94 final size:93
Alignment explanation
Indices: 36926806--36927028 Score: 236
Period size: 94 Copynumber: 2.4 Consensus size: 93
36926796 CACACAACAA
* * *
36926806 GCTGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATGCATATCCCT
1 GCTGATG-CATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCGAGGCCGATGCATATCCCT
* * *
36926871 GACATGTCTTACACTATCTCTCGTCTCAAT
65 GACATGTCTTACACTAGCTCTCATAT-AAT
* * * * * * *
36926901 GCCGATGCATGTCCCAAACATGTTTTACA-TAGGCTGGTATATCTTGAGGCCGATGTATGT-CCT
1 GCTGATGCATGTCCCAGACATGTCTTACACTA-GCTCGTATATCTCGAGGCCGATGCATATCCCT
* *
36926964 AGTCATGTCTTACACTAGCTCTCA-ATATGT
65 -GACATGTCTTACACTAGCTCTCATATA-AT
36926994 GGCTGATGCATGTCCCAGACATGTCTTACACTAGC
1 -GCTGATGCATGTCCCAGACATGTCTTACACTAGC
36927029 ACACATATCA
Statistics
Matches: 106, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
92 1 0.01
93 7 0.07
94 90 0.85
95 8 0.08
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (93 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTCGTATATCTCGAGGCCGATGCATATCCCTG
ACATGTCTTACACTAGCTCTCATATAAT
Found at i:36929459 original size:16 final size:17
Alignment explanation
Indices: 36929432--36929464 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
36929422 CTAGCCTTGC
36929432 AAAAAATCTAAAAGGGA
1 AAAAAATCTAAAAGGGA
*
36929449 AAAAAAT-TAAACGGGA
1 AAAAAATCTAAAAGGGA
36929465 TGAGCTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.64, C:0.06, G:0.18, T:0.12
Consensus pattern (17 bp):
AAAAAATCTAAAAGGGA
Found at i:36934374 original size:79 final size:78
Alignment explanation
Indices: 36934272--36934496 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 78
36934262 GCTCCTCGTT
* *
36934272 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
36934337 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* *
36934352 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
36934415 GATTTAGTATCTCGCA
63 GATTTAGTAACTCGCA
* * * * *
36934431 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
36934495 GA
63 GA
36934497 CATCATTCAA
Statistics
Matches: 125, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
78 6 0.05
79 64 0.51
80 42 0.34
81 12 0.10
82 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCGCA
Found at i:36934456 original size:119 final size:120
Alignment explanation
Indices: 36934272--36934496 Score: 291
Period size: 119 Copynumber: 1.9 Consensus size: 120
36934262 GCTCCTCGTT
36934272 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
36934337 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
36934391 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAAC
* *
36934452 CCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
62 CCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
36934497 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
118 8 0.09
119 63 0.68
120 21 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:36934496 original size:40 final size:39
Alignment explanation
Indices: 36934272--36934496 Score: 244
Period size: 40 Copynumber: 5.7 Consensus size: 39
36934262 GCTCCTCGTT
* *
36934272 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATTCGCA
* * *
36934312 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATTCGCA
36934352 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAT-TCGCA
* *
36934391 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAT-TCGCA
* * *
36934431 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-A-TTCGCA
36934472 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
36934497 CATCATTCAA
Statistics
Matches: 163, Mismatches: 14, Indels: 16
0.84 0.07 0.08
Matches are distributed among these distances:
38 3 0.02
39 30 0.18
40 117 0.72
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTATTCGCA
Found at i:36938312 original size:22 final size:22
Alignment explanation
Indices: 36938284--36938328 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
36938274 GTTCACTGGC
36938284 AGAGATAAACCAAGGCAAAGCA
1 AGAGATAAACCAAGGCAAAGCA
36938306 AGAGATAAACCAAGGCAAAGCA
1 AGAGATAAACCAAGGCAAAGCA
36938328 A
1 A
36938329 TTTTAAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.56, C:0.18, G:0.22, T:0.04
Consensus pattern (22 bp):
AGAGATAAACCAAGGCAAAGCA
Found at i:36943384 original size:43 final size:42
Alignment explanation
Indices: 36943319--36943419 Score: 121
Period size: 43 Copynumber: 2.4 Consensus size: 42
36943309 ACCTATAGCG
* *
36943319 GACACACACCATGTCGCATAGCCGTGTGTGACACACGGCTGA
1 GACACACACCATGTCGCATAGCCATGTGTCACACACGGCTGA
* ** *
36943361 GACACACAGCCGTGTCGGGTAGCCATGTGTCACACATGGCTGA
1 GACACACA-CCATGTCGCATAGCCATGTGTCACACACGGCTGA
*
36943404 GACACACGCCTATGTC
1 GACACACACC-ATGTC
36943420 TTAGACCGTG
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 10 0.20
43 39 0.80
ACGTcount: A:0.25, C:0.31, G:0.27, T:0.18
Consensus pattern (42 bp):
GACACACACCATGTCGCATAGCCATGTGTCACACACGGCTGA
Found at i:36957137 original size:130 final size:130
Alignment explanation
Indices: 36956857--36957245 Score: 564
Period size: 130 Copynumber: 3.0 Consensus size: 130
36956847 ATTTGGAGAA
* * * * * *
36956857 CATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAAC-AGGAGATCGCAACCCTGCAC
1 CATGAGTGAAATCCCAAAGGAATATTTGATTGTTTTGAACAAACGA-GAAATCGCAACCCAGCAC
* * ** * *
36956921 GATAGGGCACGATTCCCTGAATTGCTAAACATTAAACATTACCTTCGTTTTGGAGAATTTTTAAA
65 GATAGGGCACGATTCCC-GAATTGCCAAACATTGAGTATTGCCTTCGTTTTAGAGAATTTTTAAA
36956986 AG
129 AG
*
36956988 CATGAGTGAAATCCCAAAGGAATATTTGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACA
1 CATGAGTGAAATCCCAAAGGAATATTTGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACG
* ** * *
36957053 ATAGGGCACGATTCCCGAATTTCCAAACACCGAGTATCGCCTTCATTTTAGAGAATTTTTAAAAG
66 ATAGGGCACGATTCCCGAATTGCCAAACATTGAGTATTGCCTTCGTTTTAGAGAATTTTTAAAAG
* *
36957118 TATGAGTGAAATCCCAAAGGAATATTTGATTGTTTTGAACAAACGAAAAATCGCAACCCAGCACG
1 CATGAGTGAAATCCCAAAGGAATATTTGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACG
*
36957183 ATAGGGCACGATTCCCGAATTGCCAAACATTGAGTATTGCCTTCGTTTTAAAGAATTTTTAAA
66 ATAGGGCACGATTCCCGAATTGCCAAACATTGAGTATTGCCTTCGTTTTAGAGAATTTTTAAA
36957246 TGAATAGCTT
Statistics
Matches: 230, Mismatches: 27, Indels: 3
0.88 0.10 0.01
Matches are distributed among these distances:
130 157 0.68
131 72 0.31
132 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.28
Consensus pattern (130 bp):
CATGAGTGAAATCCCAAAGGAATATTTGATTGTTTTGAACAAACGAGAAATCGCAACCCAGCACG
ATAGGGCACGATTCCCGAATTGCCAAACATTGAGTATTGCCTTCGTTTTAGAGAATTTTTAAAAG
Found at i:36963011 original size:28 final size:28
Alignment explanation
Indices: 36962979--36963106 Score: 166
Period size: 29 Copynumber: 4.5 Consensus size: 28
36962969 ATAGTAAGTC
*
36962979 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
36963007 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
*
36963036 CACACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
36963064 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
36963093 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36963107 CAATCTCATG
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 43 0.49
29 44 0.51
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36963099 original size:57 final size:57
Alignment explanation
Indices: 36962978--36963106 Score: 179
Period size: 57 Copynumber: 2.3 Consensus size: 57
36962968 TATAGTAAGT
*
36962978 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
* * * * * *
36963035 TCACACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCA-ATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
36963092 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
36963107 CAATCTCATG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
57 59 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTTACATAATCAAAC
Found at i:36971063 original size:28 final size:28
Alignment explanation
Indices: 36971031--36971158 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
36971021 ATAGTAAGTC
*
36971031 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
36971059 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
36971088 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
36971116 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
36971145 CGCACACTTAGTGC
1 CGCACACTTAGTGC
36971159 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:36971121 original size:57 final size:57
Alignment explanation
Indices: 36971030--36971158 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
36971020 TATAGTAAGT
*
36971030 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
36971087 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
36971144 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
36971159 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:36976121 original size:40 final size:40
Alignment explanation
Indices: 36976052--36976227 Score: 293
Period size: 40 Copynumber: 4.4 Consensus size: 40
36976042 ACCCAAGTAA
* *
36976052 CTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGC
*
36976091 CTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
*
36976131 CTTCGGGACTTAGCCCGGATATCGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
36976171 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
36976211 CTTCGGGACTTAGCCCG
1 CTTCGGGACTTAGCCCG
36976228 ATTATCATCC
Statistics
Matches: 129, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
39 12 0.09
40 117 0.91
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:36978925 original size:26 final size:26
Alignment explanation
Indices: 36978896--36979003 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
36978886 TGATAAAAAT
36978896 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
36978922 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
36978948 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
36978974 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
36979000 TGAT
1 TGAT
36979004 TGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:36986150 original size:27 final size:27
Alignment explanation
Indices: 36986094--36986150 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
36986084 CCCTTGATCA
* *
36986094 ATAAAATGACGATTATGCCCCTATGTG
1 ATAAAATGACGATTATGCCCCAATGAG
* **
36986121 ATAAAATGACTATTATGCCGGAATGAG
1 ATAAAATGACGATTATGCCCCAATGAG
36986148 ATA
1 ATA
36986151 TATGATTATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (27 bp):
ATAAAATGACGATTATGCCCCAATGAG
Found at i:36988121 original size:13 final size:13
Alignment explanation
Indices: 36988103--36988127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36988093 GTGTCTTATC
36988103 AAGGCTTGGATCG
1 AAGGCTTGGATCG
36988116 AAGGCTTGGATC
1 AAGGCTTGGATC
36988128 TTTGGAGCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
AAGGCTTGGATCG
Found at i:36988668 original size:28 final size:28
Alignment explanation
Indices: 36988636--36988700 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
36988626 ATTTACTAGA
* *
36988636 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATATATGCAAAATGACC-TCT
36988664 ATACCCCTATATATGCAAAATGACCTCT
1 ATACCCCTATATATGCAAAATGACCTCT
36988692 ATACCCCTA
1 ATACCCCTA
36988701 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.35, C:0.29, G:0.06, T:0.29
Consensus pattern (28 bp):
ATACCCCTATATATGCAAAATGACCTCT
Found at i:36988847 original size:28 final size:28
Alignment explanation
Indices: 36988806--36988906 Score: 114
Period size: 28 Copynumber: 3.6 Consensus size: 28
36988796 AGGAAGCATC
* *
36988806 CTGGTGGCTATGCCACAAATTATTTGTT
1 CTGGTGGCTCTGCCACAAATTATCTGTT
* *
36988834 CTGGTGGCTCTGCCACATATT-TCTCTT
1 CTGGTGGCTCTGCCACAAATTATCTGTT
* *
36988861 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCACAAATTATCTGT-T
* *
36988890 CTGGTGACTCTGTCACA
1 CTGGTGGCTCTGCCACA
36988907 TTCTCTGTAT
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
27 22 0.37
28 23 0.38
29 15 0.25
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATTATCTGTT
Found at i:36988873 original size:27 final size:28
Alignment explanation
Indices: 36988806--36988895 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
36988796 AGGAAGCATC
* *
36988806 CTGGTGGCTA-TGCCACAAATTATTTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTCTT
* *
36988834 CTGGTGGCTCTGCCACATATT-TCTCTT
1 CTGGTGGCACTGCCACAAATTATCTCTT
* *
36988861 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTCT-T
36988890 CTGGTG
1 CTGGTG
36988896 ACTCTGTCAC
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTCTT
Found at i:36988920 original size:56 final size:55
Alignment explanation
Indices: 36988806--36988912 Score: 137
Period size: 55 Copynumber: 1.9 Consensus size: 55
36988796 AGGAAGCATC
* * * *
36988806 CTGGTGGCTATGCCACAAATTATTTGTTCTGGTGGCTCTGCCACATATTTCTCTT
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACTCTGCCACATATCTCTCTT
*
36988861 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TCTCT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACTCTGCCACATATCTCT
36988913 GTATCTGGCA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
54 1 0.02
55 27 0.60
56 17 0.38
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACTCTGCCACATATCTCTCTT
Found at i:36989382 original size:19 final size:19
Alignment explanation
Indices: 36989358--36989396 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
36989348 TTTTAATTAT
* *
36989358 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
36989377 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
36989396 T
1 T
36989397 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:36994993 original size:50 final size:50
Alignment explanation
Indices: 36994938--36995074 Score: 220
Period size: 50 Copynumber: 2.7 Consensus size: 50
36994928 TAAGCTTGTT
*
36994938 AATTTGTTCTTAATAATTTCGGTTAAATTTGCTCTTAATAATTCTAGTTA
1 AATTTGTTCTTAATAATTTCGGTTAAATTTGCTCTTAATAATTCCAGTTA
*
36994988 AATTTGTTCTTAATAATTTCGGTTAAATTTGTTCTTAATAATTCCAGTTA
1 AATTTGTTCTTAATAATTTCGGTTAAATTTGCTCTTAATAATTCCAGTTA
* * * *
36995038 AATTTGCTCCTAATATTTTCGGTTAAATTTGCCCTTA
1 AATTTGTTCTTAATAATTTCGGTTAAATTTGCTCTTA
36995075 TTATTTCCGA
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 80 1.00
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.49
Consensus pattern (50 bp):
AATTTGTTCTTAATAATTTCGGTTAAATTTGCTCTTAATAATTCCAGTTA
Found at i:36995080 original size:25 final size:25
Alignment explanation
Indices: 36994938--36995074 Score: 177
Period size: 25 Copynumber: 5.5 Consensus size: 25
36994928 TAAGCTTGTT
*
36994938 AATTTGTTCTTAATAATTTCGGTTA
1 AATTTGCTCTTAATAATTTCGGTTA
*
36994963 AATTTGCTCTTAATAA-TTCTAGTTA
1 AATTTGCTCTTAATAATTTC-GGTTA
*
36994988 AATTTGTTCTTAATAATTTCGGTTA
1 AATTTGCTCTTAATAATTTCGGTTA
* * *
36995013 AATTTGTTCTTAATAATTCCAGTTA
1 AATTTGCTCTTAATAATTTCGGTTA
* *
36995038 AATTTGCTCCTAATATTTTCGGTTA
1 AATTTGCTCTTAATAATTTCGGTTA
*
36995063 AATTTGCCCTTA
1 AATTTGCTCTTA
36995075 TTATTTCCGA
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
24 3 0.03
25 91 0.94
26 3 0.03
ACGTcount: A:0.28, C:0.12, G:0.10, T:0.49
Consensus pattern (25 bp):
AATTTGCTCTTAATAATTTCGGTTA
Found at i:36995659 original size:45 final size:45
Alignment explanation
Indices: 36995585--36995849 Score: 299
Period size: 45 Copynumber: 6.0 Consensus size: 45
36995575 TATCGTACAG
* * * *
36995585 TACTATTCGGGTCTTTGAGCCTAGTAGGCTATAATGCTAGTGAGA
1 TACTAATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
* * * *
36995630 TAGTAATCGGGCCTTTGAGCATAACAGGCTATAATGCC-GATGATA
1 TACTAATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAG-TGAGA
* * *
36995675 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTAATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
* *
36995720 TACTATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCAGTGAGA
1 TACTAATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
* *
36995765 TACT-ATCTGGGCCTTCGAGCCTAGCAGGCTATAATGCCAGTGAAA
1 TACTAATC-GGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
* * *
36995810 TGA-T-ATCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 T-ACTAATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGA
36995850 ATGAATTCGG
Statistics
Matches: 193, Mismatches: 23, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
42 10 0.05
43 18 0.09
44 6 0.03
45 157 0.81
46 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (45 bp):
TACTAATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGA
Found at i:37005268 original size:15 final size:15
Alignment explanation
Indices: 37005248--37005277 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37005238 CAAAACTTGT
37005248 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
37005263 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
37005278 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:37012964 original size:25 final size:25
Alignment explanation
Indices: 37012929--37013074 Score: 166
Period size: 25 Copynumber: 5.8 Consensus size: 25
37012919 TAAGCTTGTT
*
37012929 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
**
37012954 AATTTGCTCTTAATAATTCCAATTA
1 AATTTGCTCTTAATAATTCCGGTTA
* * *
37012979 AATTTGTTCTTAACAATTCTGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* **
37013004 AATTTGTTCTTAATAATTCTAGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* *
37013029 AATTTGCTCTTAATATTTCTGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* * *
37013054 AATTTGCCCTTATTATTTCCG
1 AATTTGCTCTTAATAATTCCG
37013075 AATAAGTTAC
Statistics
Matches: 105, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 105 1.00
ACGTcount: A:0.28, C:0.14, G:0.10, T:0.49
Consensus pattern (25 bp):
AATTTGCTCTTAATAATTCCGGTTA
Found at i:37012987 original size:50 final size:50
Alignment explanation
Indices: 37012929--37013065 Score: 202
Period size: 50 Copynumber: 2.7 Consensus size: 50
37012919 TAAGCTTGTT
*
37012929 AATTTGTTCTTAATAATTCCGGTTAAATTTGCTCTTAATAATTCCAATTA
1 AATTTGTTCTTAATAATTCTGGTTAAATTTGCTCTTAATAATTCCAATTA
* * * *
37012979 AATTTGTTCTTAACAATTCTGGTTAAATTTGTTCTTAATAATTCTAGTTA
1 AATTTGTTCTTAATAATTCTGGTTAAATTTGCTCTTAATAATTCCAATTA
* * *
37013029 AATTTGCTCTTAATATTTCTGGTTAAATTTGCCCTTA
1 AATTTGTTCTTAATAATTCTGGTTAAATTTGCTCTTA
37013066 TTATTTCCGA
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.29, C:0.13, G:0.09, T:0.48
Consensus pattern (50 bp):
AATTTGTTCTTAATAATTCTGGTTAAATTTGCTCTTAATAATTCCAATTA
Found at i:37013957 original size:45 final size:45
Alignment explanation
Indices: 37013893--37014156 Score: 376
Period size: 45 Copynumber: 6.0 Consensus size: 45
37013883 TATCGTAGAG
* * *
37013893 TACTATTCGAGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
37013938 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
37013983 TACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
37014028 TACTATTCGAGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
37014073 TACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCC-GTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
37014117 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCAGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
37014157 ATGAATTTGG
Statistics
Matches: 203, Mismatches: 14, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
41 6 0.03
42 22 0.11
43 5 0.02
44 8 0.04
45 162 0.80
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:37015044 original size:42 final size:43
Alignment explanation
Indices: 37014989--37015110 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 43
37014979 CATTGATTTG
*
37014989 TGATTTACATGTAAGACCATGTATGGGACATTGGCATCG-TATA
1 TGATTT-CATGTAAGACCATGTCTGGGACATTGGCATCGATATA
* * * * *
37015032 TGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCGATATT
1 TGATTTCATGTAAGACCATGTCTGGGACATTGGCATCGATATA
* ** *
37015075 TGATTACATGTAAGACCACATCTGGGACTTTGGCAT
1 TGATTTCATGTAAGACCATGTCTGGGACATTGGCAT
37015111 TGTTCGAGCT
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
42 27 0.42
43 37 0.58
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
TGATTTCATGTAAGACCATGTCTGGGACATTGGCATCGATATA
Found at i:37015079 original size:43 final size:42
Alignment explanation
Indices: 37014989--37015092 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 42
37014979 CATTGATTTG
*
37014989 TGATTTACATGTAAGACCATGTATGGGACATTGGCATCGTATA
1 TGATTT-CATGTAAGACCATGTATGGGACAGTGGCATCGTATA
* * * * *
37015032 TGATTTCGTGTAAGACCCTGTCTGGGATAGTGGCATCGATATT
1 TGATTTCATGTAAGACCATGTATGGGACAGTGGCATCG-TATA
*
37015075 TGATTACATGTAAGACCA
1 TGATTTCATGTAAGACCA
37015093 CATCTGGGAC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 27 0.53
43 24 0.47
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (42 bp):
TGATTTCATGTAAGACCATGTATGGGACAGTGGCATCGTATA
Found at i:37016575 original size:42 final size:42
Alignment explanation
Indices: 37016503--37016592 Score: 135
Period size: 42 Copynumber: 2.1 Consensus size: 42
37016493 ATGGGCTAGA
*
37016503 CACATGGGTGTGTCTAATGCCATGTAAGGCACACGGCCTGCT
1 CACACGGGTGTGTCTAATGCCATGTAAGGCACACGGCCTGCT
** * *
37016545 CACACGGGTGTGTCTAATGCTGTGTGAGGCACACGGCCTGTT
1 CACACGGGTGTGTCTAATGCCATGTAAGGCACACGGCCTGCT
37016587 CACACG
1 CACACG
37016593 AGCGTGTGAC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (42 bp):
CACACGGGTGTGTCTAATGCCATGTAAGGCACACGGCCTGCT
Found at i:37019160 original size:43 final size:42
Alignment explanation
Indices: 37019040--37019197 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 42
37019030 AGCTCATACA
37019040 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACAT-TAAATCAAATAT-G
* * * *
37019083 ATACC-ACTATCCCAGACAG-GGTCTTGCATGAAATCAAATATG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATTAAATCAAATATG
* *
37019125 ATGCCAACGTCCCAGATGTGGTCTTACACTTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACGTGGTCTTACA-TTAAATCA-AA-TATG
*
37019169 ATGCCAACGTCCCAAACGTGGTCTTACAT
1 ATGCCAACGTCCCAGACGTGGTCTTACAT
37019198 GAAAACACAT
Statistics
Matches: 95, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
41 1 0.01
42 22 0.23
43 41 0.43
44 30 0.32
45 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATTAAATCAAATATG
Found at i:37022809 original size:27 final size:28
Alignment explanation
Indices: 37022773--37022885 Score: 137
Period size: 27 Copynumber: 4.2 Consensus size: 28
37022763 AGCATGACTG
*
37022773 CCAGA-ACAGATA-TTGTGACAGAGTCA
1 CCAGATACAGATATTTGTGACAGAGCCA
*
37022799 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGACAGAGCCA
* *
37022826 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGACAGAGCCA
*
37022854 CTAGAT-CAGATATTTGTCGA-AGAGCCA
1 CCAGATACAGATATTTGT-GACAGAGCCA
37022881 CCAGA
1 CCAGA
37022886 ACGCTTCCTC
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
26 5 0.06
27 53 0.69
28 19 0.25
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGATACAGATATTTGTGACAGAGCCA
Found at i:37022864 original size:54 final size:55
Alignment explanation
Indices: 37022773--37022886 Score: 153
Period size: 55 Copynumber: 2.1 Consensus size: 55
37022763 AGCATGACTG
* * *
37022773 CCAG-AACAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGAAACAGATATTGTGACAGAGCCACCAGATACAGATATTTGTCGAAGAGCCA
* *
37022826 CCAGAAACAGATATTTGTGGCAGAGCCACTAGAT-CAGATATTTGTCGAAGAGCCA
1 CCAGAAACAGATA-TTGTGACAGAGCCACCAGATACAGATATTTGTCGAAGAGCCA
37022881 CCAGAA
1 CCAGAA
37022887 CGCTTCCTCC
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
53 4 0.08
54 14 0.26
55 35 0.66
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (55 bp):
CCAGAAACAGATATTGTGACAGAGCCACCAGATACAGATATTTGTCGAAGAGCCA
Found at i:37027325 original size:46 final size:46
Alignment explanation
Indices: 37027275--37027447 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
37027265 TGGTTGAGCA
37027275 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
37027321 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--ATG
*
37027366 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
37027414 CCCGAGCTCATTGAGTTGAGTCTGATTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
37027448 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 3 0.03
46 55 0.52
47 26 0.25
48 3 0.03
50 5 0.05
51 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:37027390 original size:47 final size:44
Alignment explanation
Indices: 37027272--37027395 Score: 144
Period size: 47 Copynumber: 2.7 Consensus size: 44
37027262 GGATGGTTGA
*
37027272 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAG-T---TTATGGATGCAAAG
* *
37027320 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTATG-GATGCAA--AG
37027365 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTT
37027396 CACTTATGGA
Statistics
Matches: 68, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
42 4 0.06
43 6 0.09
45 3 0.04
46 26 0.38
47 28 0.41
48 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (44 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTATGGATGCAAAG
Found at i:37036755 original size:42 final size:41
Alignment explanation
Indices: 37036707--37036859 Score: 173
Period size: 42 Copynumber: 3.7 Consensus size: 41
37036697 TGAGTTTACA
*
37036707 TGTAAGACCATATCCGGGATATGGCATCATTATGAGATTCCG
1 TGTAAGACCATATCTGGGATATGGCATCA-TATGAGATTCCG
* * * *
37036749 TATAAGACCATGTCTGGGACATGGCATCGATATGAGAAT-CG
1 TGTAAGACCATATCTGGGATATGGCATC-ATATGAGATTCCG
* * * * *
37036790 TGTAAGACCATAGCTGGGCTATTGGCATCAATATAAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATC-ATATGAGATTCCG
37036833 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
37036860 TGGTATGATT
Statistics
Matches: 91, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 18 0.20
42 52 0.57
43 21 0.23
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGATATGGCATCATATGAGATTCCG
Found at i:37043508 original size:40 final size:40
Alignment explanation
Indices: 37043414--37043634 Score: 231
Period size: 40 Copynumber: 5.5 Consensus size: 40
37043404 TATTCGAATG
*
37043414 ATATCCGGGCTAAG-TCTCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCTA-GTGACT
* * * *
37043455 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
37043495 ATATCCGGGCTAAGACCCGAAGCCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
*
37043535 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
37043575 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGT-ACTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGAC-T
37043614 ATATCC-GGCTAA-ATCTCGAAG
1 ATATCCGGGCTAAGATC-CGAAG
37043635 ATTACTTGAG
Statistics
Matches: 152, Mismatches: 21, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
37 2 0.01
38 13 0.09
39 16 0.11
40 91 0.60
41 28 0.18
42 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:37051593 original size:40 final size:40
Alignment explanation
Indices: 37051499--37051683 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
37051489 TATTCGAATG
*
37051499 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * * *
37051540 ATAACCGGACTAAGATCTGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
37051580 ATATCCGGGCTAAGACCCGAAGCCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
*
37051620 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
37051660 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
37051684 CTTGTGCAAG
Statistics
Matches: 120, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 90 0.75
41 28 0.23
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:37051667 original size:80 final size:81
Alignment explanation
Indices: 37051499--37051681 Score: 237
Period size: 80 Copynumber: 2.3 Consensus size: 81
37051489 TATTCGAATG
* * * * *
37051499 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCTGAAGGC
1 ATATCCGGGCTAAGACCCGAAGCCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
37051564 ATTCGTGCGAGTTGCT
66 ATTCATGCGAGTTGCT
* *
37051580 ATATCCGGGCTAAGACCCGAAGCCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGCCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* *
37051643 CATTTATGCTAG-TGACT
65 CATTCATGCGAGTTG-CT
37051660 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
37051682 GCCTTGTGCA
Statistics
Matches: 90, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
79 3 0.03
80 56 0.62
81 31 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGCCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCT
Found at i:37064347 original size:39 final size:40
Alignment explanation
Indices: 37064304--37064404 Score: 109
Period size: 39 Copynumber: 2.6 Consensus size: 40
37064294 ACCAGTTCGA
* * * * *
37064304 AGCCTGCGGGA-CTTTAGCCCGGACGTATTTCTAGCACGT
1 AGCCTGCGGGACCTTAAGCCCGGACATAATTCCAGCACAT
*
37064343 AGCCTGC-GGACCTTAAGTCCGGACATAATTCCAGCACAT
1 AGCCTGCGGGACCTTAAGCCCGGACATAATTCCAGCACAT
* *
37064382 AGCCTGC-GGACCCTAAGTCCGGA
1 AGCCTGCGGGACCTTAAGCCCGGA
37064405 TATACATCAC
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
38 3 0.06
39 51 0.94
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.21
Consensus pattern (40 bp):
AGCCTGCGGGACCTTAAGCCCGGACATAATTCCAGCACAT
Found at i:37070161 original size:40 final size:39
Alignment explanation
Indices: 37070102--37070358 Score: 293
Period size: 40 Copynumber: 6.5 Consensus size: 39
37070092 GGATGATAAT
* * * *
37070102 CGGGCTAAGTCCCGGAGGCATTTGCGCTAGTGACTAGTTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTC
* *
37070142 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTC
* *
37070182 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TTC
* *
37070222 CGGGCTAAGTCCCGAAGGCATTTGTGCGTGCTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TC
*
37070262 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-TC
* * *
37070302 CGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAT-TC
* *
37070342 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
37070359 TACTTGGCTT
Statistics
Matches: 195, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 15 0.08
40 180 0.92
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTC
Found at i:37070315 original size:120 final size:120
Alignment explanation
Indices: 37070102--37070332 Score: 342
Period size: 120 Copynumber: 1.9 Consensus size: 120
37070092 GGATGATAAT
* *
37070102 CGGGCTAAGTCCCGGAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGGT
* * *
37070167 GCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
66 GCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTATTACATC
*
37070222 CGGGCTAAGTCCCGAAGGCATTTGTGC--GTGCTACTA-TATCCGGGCTAAGTCCCGAAGGCATT
1 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTG--ACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
* *
37070284 GGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTCGAGCGAGT
63 GGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGT
37070333 AGCTATATCC
Statistics
Matches: 100, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
118 3 0.03
119 1 0.01
120 96 0.96
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.26
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGGT
GCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTATTACATC
Found at i:37070343 original size:120 final size:120
Alignment explanation
Indices: 37070102--37070358 Score: 335
Period size: 120 Copynumber: 2.1 Consensus size: 120
37070092 GGATGATAAT
* *
37070102 CGGGCTAAGTCCCGGAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGGT
* * * *
37070167 GCGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
66 GCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTACATC
*
37070222 CGGGCTAAGTCCCGAAGGCATTTGTGC--GTGCTACTA-TATCCGGGCTAAGTCCCGAAGGCATT
1 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTG--ACTAGT-TCCGGGCTAAGTCCCGAAGGCATT
* * *
37070284 GGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATC
63 GGTGCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTA-CTACATC
* *
37070342 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
37070359 TACTTGGCTT
Statistics
Matches: 121, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
118 3 0.02
119 17 0.14
120 101 0.83
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGGT
GCGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTCGAGCGAGTTACTACATC
Found at i:37075682 original size:84 final size:83
Alignment explanation
Indices: 37075552--37075712 Score: 223
Period size: 84 Copynumber: 1.9 Consensus size: 83
37075542 TGAGTTTACG
* * * * * *
37075552 TGTAAGACCATATCTGGGATATGGCATCATTATGATATTTCGTGTAAGACCATGTCCGGGACATG
1 TGTAAGACCATAGCTGGGATATGGCATCAATATGAGATCTCATGTAAGACCATATCCGGGACATG
37075617 GCATTGATATGAGAATCA
66 GCATTGATATGAGAATCA
* * *
37075635 TGTAAGACCATAGCTGGGCTATTGGCATCAATATGAGATCTCATGTAAGACCATATCTGGGATAT
1 TGTAAGACCATAGCTGGGATA-TGGCATCAATATGAGATCTCATGTAAGACCATATCCGGGACAT
*
37075700 GGCATTGGTATGA
65 GGCATTGATATGA
37075713 TTCTATGTGT
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
83 19 0.28
84 48 0.72
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (83 bp):
TGTAAGACCATAGCTGGGATATGGCATCAATATGAGATCTCATGTAAGACCATATCCGGGACATG
GCATTGATATGAGAATCA
Found at i:37075712 original size:42 final size:42
Alignment explanation
Indices: 37075552--37075704 Score: 182
Period size: 42 Copynumber: 3.6 Consensus size: 42
37075542 TGAGTTTACG
* * * *
37075552 TGTAAGACCATATCTGGGATATGGCATCATTATGATATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCAATATGAGATATCA
* * * **
37075594 TGTAAGACCATGTCCGGGACATGGCATTGATATGAGA-ATCA
1 TGTAAGACCATATCTGGGATATGGCATCAATATGAGATATCA
* * *
37075635 TGTAAGACCATAGCTGGGCTATTGGCATCAATATGAGATCTCA
1 TGTAAGACCATATCTGGGATA-TGGCATCAATATGAGATATCA
37075678 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
37075705 TGGTATGATT
Statistics
Matches: 90, Mismatches: 19, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
41 18 0.20
42 50 0.56
43 22 0.24
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCAATATGAGATATCA
Found at i:37081215 original size:33 final size:32
Alignment explanation
Indices: 37081167--37081229 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
37081157 TTGCTGCAAT
* *
37081167 CTGGTGGCTTCGCCACATATATATATATCTGTC
1 CTGGTGGCCTAGCCACA-ATATATATATCTGTC
*
37081200 CTGGTGGCCTAGCCACAATATCTATATCTG
1 CTGGTGGCCTAGCCACAATATATATATCTG
37081230 GTGACTTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 12 0.44
33 15 0.56
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.33
Consensus pattern (32 bp):
CTGGTGGCCTAGCCACAATATATATATCTGTC
Found at i:37091079 original size:42 final size:43
Alignment explanation
Indices: 37091032--37091183 Score: 141
Period size: 42 Copynumber: 3.6 Consensus size: 43
37091022 GTGTTATCAT
* * * *
37091032 GTAAGACCATATCTGGGATATGGCGTTGATATAAGATTTCG-A
1 GTAAGACCATATCTGGGATATGGCATCGAAATAAGATCTCGTA
* * *
37091074 GTAAGACCATGTCTGGGACATGGCATCGAAATGAGATCTCGTA
1 GTAAGACCATATCTGGGATATGGCATCGAAATAAGATCTCGTA
* * ** *
37091117 -TAAGACCATATTTGTGATATGGCATCGATGTGAGATC-C-TA
1 GTAAGACCATATCTGGGATATGGCATCGAAATAAGATCTCGTA
* *
37091157 TGTAAGACCACATCTGGGACATGGCAT
1 -GTAAGACCATATCTGGGATATGGCAT
37091184 TGGTATCTTA
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 86 0.96
43 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (43 bp):
GTAAGACCATATCTGGGATATGGCATCGAAATAAGATCTCGTA
Found at i:37091613 original size:71 final size:71
Alignment explanation
Indices: 37091497--37091639 Score: 268
Period size: 71 Copynumber: 2.0 Consensus size: 71
37091487 TTACTCATAT
*
37091497 TTACATGCAAACTTACTAAGCTTTATGCTTACTCCCCTTTCTTTTCCATTTTTCTTATAGTATCG
1 TTACATGCAAACTTACTAAGCTTTATGCTTACTCCACTTTCTTTTCCATTTTTCTTATAGTATCG
37091562 CCAAGC
66 CCAAGC
*
37091568 TTACATGCAAACTTACTAAGCTTTATGCTTACTCCATTTTCTTTTCCATTTTTCTTATAGTATCG
1 TTACATGCAAACTTACTAAGCTTTATGCTTACTCCACTTTCTTTTCCATTTTTCTTATAGTATCG
37091633 CCAAGC
66 CCAAGC
37091639 T
1 T
37091640 ATGTAACACC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.23, C:0.25, G:0.08, T:0.43
Consensus pattern (71 bp):
TTACATGCAAACTTACTAAGCTTTATGCTTACTCCACTTTCTTTTCCATTTTTCTTATAGTATCG
CCAAGC
Found at i:37104470 original size:42 final size:42
Alignment explanation
Indices: 37104368--37104481 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 42
37104358 AGCATATACA
* * *
37104368 ATGCCAACGTCCCAGAC-GTGGTCTTACATATAATCAAACATCG
1 ATGCCAATGT-CCAGACAG-GGTCTTACACAAAATCAAACATCG
** *
37104411 ATGCCGCTGTCCTAGACAGGGTCTTACACAAAATCATACA-CG
1 ATGCCAATGTCC-AGACAGGGTCTTACACAAAATCAAACATCG
*
37104453 ATGCCAATGTCTCAGACATGGTCTTACAC
1 ATGCCAATGTC-CAGACAGGGTCTTACAC
37104482 GTAAAAAAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
42 28 0.47
43 30 0.51
44 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCAGACAGGGTCTTACACAAAATCAAACATCG
Found at i:37104876 original size:97 final size:97
Alignment explanation
Indices: 37104710--37104904 Score: 345
Period size: 97 Copynumber: 2.0 Consensus size: 97
37104700 TTTCAAATAC
* *
37104710 ATTTATTTGTATATAGACTTACATCTCATATACTATCAAAGTAATAACATTAAAATACACATTGC
1 ATTTATTTGTATATAGACTTACATCTCATATACTATCAAAGCAATAAAATTAAAATACACATTGC
*
37104775 ATTATTAAAAATCATATGAACTTATCTCATAT
66 ATTATTAAAAATCATATGAACTTACCTCATAT
*
37104807 ATTTATTTGTATATAGACTTGCATCTCATATACTATCAAAGCAATAAAATTAAAATACACATTGC
1 ATTTATTTGTATATAGACTTACATCTCATATACTATCAAAGCAATAAAATTAAAATACACATTGC
*
37104872 ATTATTAAAAATCATATGAACTTACCTCGTAT
66 ATTATTAAAAATCATATGAACTTACCTCATAT
37104904 A
1 A
37104905 CGAAAATGAC
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
97 93 1.00
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.37
Consensus pattern (97 bp):
ATTTATTTGTATATAGACTTACATCTCATATACTATCAAAGCAATAAAATTAAAATACACATTGC
ATTATTAAAAATCATATGAACTTACCTCATAT
Found at i:37109004 original size:37 final size:37
Alignment explanation
Indices: 37108954--37109026 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
37108944 ACCCCTTGTC
37108954 GAGGATAGATTATTTATTTGATCAACTGAAGGGAGCT
1 GAGGATAGATTATTTATTTGATCAACTGAAGGGAGCT
37108991 GAGGATAGATTATTTATTTGATCAACTGAAGGGAGC
1 GAGGATAGATTATTTATTTGATCAACTGAAGGGAGC
37109027 CATAGCATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.32
Consensus pattern (37 bp):
GAGGATAGATTATTTATTTGATCAACTGAAGGGAGCT
Found at i:37114813 original size:14 final size:14
Alignment explanation
Indices: 37114794--37114826 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
37114784 GCATGATTAT
37114794 TTTGAGACCATAAA
1 TTTGAGACCATAAA
37114808 TTTGAGACCATAAA
1 TTTGAGACCATAAA
37114822 TTTGA
1 TTTGA
37114827 AGTAGAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.33
Consensus pattern (14 bp):
TTTGAGACCATAAA
Found at i:37120835 original size:28 final size:27
Alignment explanation
Indices: 37120799--37120927 Score: 109
Period size: 29 Copynumber: 4.5 Consensus size: 27
37120789 TCCCTACATA
**
37120799 CATTCATATTTCCCA-CTTGGCCCAATCT
1 CATTCATATGGCCCATC-TGGCCCAAT-T
*
37120827 CATTTATATGGCCCATCTGGCCCAATT
1 CATTCATATGGCCCATCTGGCCCAATT
*
37120854 CATATTCATATGGCCCATCAGGCCCAATT
1 C--ATTCATATGGCCCATCTGGCCCAATT
*
37120883 CATATTCATATGGCCCAT-TAGGCCCAAAT
1 C--ATTCATATGGCCCATCT-GGCCCAATT
*
37120912 CACCTTTATATGGCCC
1 CA--TTCATATGGCCC
37120928 GTTACGCCCA
Statistics
Matches: 87, Mismatches: 8, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
27 3 0.03
28 21 0.24
29 63 0.72
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.31
Consensus pattern (27 bp):
CATTCATATGGCCCATCTGGCCCAATT
Found at i:37120869 original size:29 final size:29
Alignment explanation
Indices: 37120816--37120927 Score: 140
Period size: 29 Copynumber: 3.9 Consensus size: 29
37120806 ATTTCCCACT
37120816 TGGCCCAATCTCAT-TT-ATATGGCCCATC
1 TGGCCCAAT-TCATATTCATATGGCCCATC
37120844 TGGCCCAATTCATATTCATATGGCCCATC
1 TGGCCCAATTCATATTCATATGGCCCATC
*
37120873 AGGCCCAATTCATATTCATATGGCCCAT-
1 TGGCCCAATTCATATTCATATGGCCCATC
* ** *
37120901 TAGGCCCAAATCACCTTTATATGGCCC
1 T-GGCCCAATTCATATTCATATGGCCC
37120928 GTTACGCCCA
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
27 4 0.05
28 11 0.15
29 60 0.80
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.29
Consensus pattern (29 bp):
TGGCCCAATTCATATTCATATGGCCCATC
Found at i:37120936 original size:29 final size:28
Alignment explanation
Indices: 37120830--37120950 Score: 100
Period size: 29 Copynumber: 4.2 Consensus size: 28
37120820 CCAATCTCAT
* * **
37120830 TTATATGGCCCATCT-GGCCCAATTCATA
1 TTATATGGCCCAT-TACGCCCAAATCACC
* * * **
37120858 TTCATATGGCCCATCAGGCCCAATTCATA
1 TT-ATATGGCCCATTACGCCCAAATCACC
*
37120887 TTCATATGGCCCATTAGGCCCAAATCACC
1 TT-ATATGGCCCATTACGCCCAAATCACC
*
37120916 TTTATATGGCCCGTTACGCCCAAATCACC
1 -TTATATGGCCCATTACGCCCAAATCACC
37120945 TTATAT
1 TTATAT
37120951 TCATGTTCAC
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
28 8 0.10
29 73 0.88
30 2 0.02
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (28 bp):
TTATATGGCCCATTACGCCCAAATCACC
Found at i:37122793 original size:30 final size:30
Alignment explanation
Indices: 37122752--37122812 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
37122742 ATGTGTATGG
37122752 ACTACCATAGGCTTAATAAGGAAACTAGGA
1 ACTACCATAGGCTTAATAAGGAAACTAGGA
*
37122782 ACTACCGTAGGCTTAATAAGGAAACTAGGA
1 ACTACCATAGGCTTAATAAGGAAACTAGGA
37122812 A
1 A
37122813 AGGTCATTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.21, T:0.20
Consensus pattern (30 bp):
ACTACCATAGGCTTAATAAGGAAACTAGGA
Found at i:37135702 original size:18 final size:18
Alignment explanation
Indices: 37135681--37135715 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37135671 AGAAAAGAAA
37135681 ATTGA-AAAAGAAATTGAG
1 ATTGAGAAAA-AAATTGAG
37135699 ATTGAGAAAAAAATTGA
1 ATTGAGAAAAAAATTGA
37135716 AAAAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (18 bp):
ATTGAGAAAAAAATTGAG
Found at i:37137791 original size:20 final size:20
Alignment explanation
Indices: 37137746--37137793 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
37137736 CAAGCTAATT
*
37137746 TCAGCTCAATTCCAGCTCCC
1 TCAGCTCAATTCCAGCTCCA
* *
37137766 TTAGCTCAATTCGA-CTCCAA
1 TCAGCTCAATTCCAGCTCC-A
37137786 TCAGCTCA
1 TCAGCTCA
37137794 CTTGAGCTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.25, C:0.38, G:0.10, T:0.27
Consensus pattern (20 bp):
TCAGCTCAATTCCAGCTCCA
Found at i:37140542 original size:46 final size:46
Alignment explanation
Indices: 37140470--37140596 Score: 175
Period size: 46 Copynumber: 2.8 Consensus size: 46
37140460 GGTCATATGT
* *
37140470 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGC-CAGAGCATGA
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACAGAG-ACGA
* *
37140516 GTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCACTGAGACGA
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACAGAGACGA
** *
37140562 AAGCTAGCGTAAGACATGTCTGGGACATGCATCAG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAG
37140597 TCTCGCGATA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 68 0.94
47 4 0.06
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.20
Consensus pattern (46 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACAGAGACGA
Found at i:37143730 original size:25 final size:23
Alignment explanation
Indices: 37143621--37143734 Score: 95
Period size: 23 Copynumber: 4.8 Consensus size: 23
37143611 AGCTCGAAGA
***
37143621 AGCTTACTGTTTCAGCTCATTGG
1 AGCTTACTGTTTCAGCTCAAAAG
* * * *
37143644 AACTTATTGATTCAGCTCGAAAG
1 AGCTTACTGTTTCAGCTCAAAAG
*
37143667 AGCTTACTG-TTCAGCTCAATAG
1 AGCTTACTGTTTCAGCTCAAAAG
*
37143689 AGCTTACCGTTTTTCAGCTCAAAAG
1 AGCTTA-C-TGTTTCAGCTCAAAAG
*
37143714 AGCTTATTGTTCATCAGCTCA
1 AGCTTACTGTT--TCAGCTCA
37143735 GGAGGAGTTT
Statistics
Matches: 71, Mismatches: 15, Indels: 8
0.76 0.16 0.09
Matches are distributed among these distances:
22 17 0.24
23 27 0.38
24 1 0.01
25 26 0.37
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (23 bp):
AGCTTACTGTTTCAGCTCAAAAG
Found at i:37151145 original size:47 final size:47
Alignment explanation
Indices: 37151080--37151723 Score: 892
Period size: 47 Copynumber: 13.4 Consensus size: 47
37151070 CAGCCAAGAG
*
37151080 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
37151127 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
37151174 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAA
1 AGTGTA--TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
37151223 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
37151274 AGTATATGTATATATGTAATAAGGCCTAATAGCTGATGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
37151325 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
37151372 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
37151419 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
37151470 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
37151517 AGTGTATATGTGTGATAAGGCCTAATCGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
37151564 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
37151611 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * * *
37151658 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
37151705 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
37151724 TCCCGAAAGG
Statistics
Matches: 548, Mismatches: 37, Indels: 24
0.90 0.06 0.04
Matches are distributed among these distances:
47 369 0.67
49 43 0.08
51 132 0.24
53 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:37151429 original size:145 final size:141
Alignment explanation
Indices: 37151080--37151672 Score: 934
Period size: 145 Copynumber: 4.1 Consensus size: 141
37151070 CAGCCAAGAG
37151080 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
* * *
37151145 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA--TATATGTGATAAGGCCTAATAGCCGACG
*
37151210 TGATGAATGAGAA
129 TGATGAATGTGAA
* *
37151223 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATGTATATA
1 A--G--TGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG----TGTATATA
* *
37151288 TGTAATAAGGCCTAATAGCTGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAG
58 TGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAG
37151353 CCGACGTGATGAATGTGAA
123 CCGACGTGATGAATGTGAA
37151372 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA--G--TGTATATATGTA
*
37151437 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGA
62 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
37151502 CGTGATGAATGTGAA
127 CGTGATGAATGTGAA
*
37151517 AGTGTATATGTGTGATAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
* * *
37151582 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTG
37151647 ATGAATGTGAA
131 ATGAATGTGAA
*
37151658 AGTGTATATATGTGA
1 AGTGTATATGTGTGA
37151673 CAGGGCCGAG
Statistics
Matches: 423, Mismatches: 17, Indels: 22
0.92 0.04 0.05
Matches are distributed among these distances:
141 102 0.24
143 2 0.00
145 185 0.44
147 47 0.11
149 38 0.09
151 49 0.12
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (141 bp):
AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTG
ATGAATGTGAA
Found at i:37151898 original size:37 final size:37
Alignment explanation
Indices: 37151842--37151920 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37151832 CCGAGCTCTA
* * *
37151842 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
37151879 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37151916 AAGAC
1 AAGAC
37151921 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37155507 original size:46 final size:46
Alignment explanation
Indices: 37155413--37155523 Score: 125
Period size: 46 Copynumber: 2.4 Consensus size: 46
37155403 AGACTCACCA
* * * *
37155413 CAGCTCGAAAAAGCTTACTGTTTCAACTCATTGGAGCTTACCGATT
1 CAGCTCGAAAGAGCTTACTATTTCAACTCAATAGAGCTTACCGATT
* * *
37155459 CAGCTTGAAAGAGCTTACTATTT-AGCTCAATAGAGCTTACCGTTTT
1 CAGCTCGAAAGAGCTTACTATTTCAACTCAATAGAGCTTACCG-ATT
* *
37155505 CAGCTCAAAAGAGATTACT
1 CAGCTCGAAAGAGCTTACT
37155524 GTTCATCAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 16 0.30
46 38 0.70
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (46 bp):
CAGCTCGAAAGAGCTTACTATTTCAACTCAATAGAGCTTACCGATT
Found at i:37155517 original size:24 final size:24
Alignment explanation
Indices: 37155446--37155536 Score: 73
Period size: 24 Copynumber: 3.9 Consensus size: 24
37155436 CAACTCATTG
* **
37155446 GAGCTTACCG-ATTCAGCTTGAAA
1 GAGCTTACCGTTTTCAGCTCAAAA
*
37155469 GAGCTTA-C-TATTT-AGCTCAATA
1 GAGCTTACCGT-TTTCAGCTCAAAA
37155491 GAGCTTACCGTTTTCAGCTCAAAA
1 GAGCTTACCGTTTTCAGCTCAAAA
* * *
37155515 GAGATTACTGTTCATCAGCTCA
1 GAGCTTACCGTT-TTCAGCTCA
37155537 GGAGGAGCTT
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
22 14 0.26
23 13 0.24
24 19 0.35
25 8 0.15
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (24 bp):
GAGCTTACCGTTTTCAGCTCAAAA
Found at i:37166649 original size:40 final size:40
Alignment explanation
Indices: 37166612--37166743 Score: 169
Period size: 40 Copynumber: 3.3 Consensus size: 40
37166602 GCTACTCGTT
*
37166612 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
37166652 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * *
37166692 CAAATGCCTTCAGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
37166731 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37166744 ATCTTAGTCC
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 33 0.40
40 48 0.58
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:37166733 original size:39 final size:40
Alignment explanation
Indices: 37166640--37166749 Score: 152
Period size: 39 Copynumber: 2.8 Consensus size: 40
37166630 AGCCCGGTTA
* * *
37166640 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGAAAT
*
37166680 TAGTAACTCGCACAAATGCCTTCAGG-CTTAGCCCGAAAT
1 TAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGAAAT
*
37166719 TAGTATCTCGCACAAATGCCTTC-GGATCTTA
1 TAGTAACTCGCACAAATGCCTTCAGGA-CTTA
37166750 GTCCGGATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.51
40 29 0.46
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.26
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCAGGACTTAACCCGAAAT
Found at i:37166756 original size:79 final size:80
Alignment explanation
Indices: 37166640--37166794 Score: 199
Period size: 79 Copynumber: 1.9 Consensus size: 80
37166630 AGCCCGGTTA
* *
37166640 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGCCTTCA
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAA-GCCTTCA
37166704 GG-CTTAGCCCGAAAT
65 GGACTTAGCCCGAAAT
* ** * * *
37166719 TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCG
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCA
37166783 GGACTTAGCCCG
65 GGACTTAGCCCG
37166795 GACATCATTC
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
78 3 0.05
79 45 0.69
80 17 0.26
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCAG
GACTTAGCCCGAAAT
Found at i:37169964 original size:26 final size:26
Alignment explanation
Indices: 37169935--37170012 Score: 90
Period size: 26 Copynumber: 3.1 Consensus size: 26
37169925 TACCCGAAGC
37169935 TCCTGATTAATATCTCTTTATGAGCT
1 TCCTGATTAATATCTCTTTATGAGCT
* *
37169961 TCCTGATTAAAAGT-TCTTTATGAACT
1 TCCTGATTAATA-TCTCTTTATGAGCT
**
37169987 TCCTGATT-ATGGCTC-TTATGAGCT
1 TCCTGATTAATATCTCTTTATGAGCT
37170011 TC
1 TC
37170013 ATGTTATATA
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
24 10 0.23
25 3 0.07
26 30 0.68
27 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (26 bp):
TCCTGATTAATATCTCTTTATGAGCT
Found at i:37176734 original size:29 final size:28
Alignment explanation
Indices: 37176698--37176775 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
37176688 TCATGAGATT
37176698 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
37176728 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
37176755 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
37176776 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:37177005 original size:144 final size:145
Alignment explanation
Indices: 37176753--37177025 Score: 458
Period size: 144 Copynumber: 1.9 Consensus size: 145
37176743 GTTTAAAGTA
* *
37176753 CATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGTGTGCGAACCCAATATATATTTTCT
* * *
37176818 ATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGGTAAGTG
66 ATAAATTATTTACATGAAGAGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
37176883 TGCGAACTTGAAATG
131 TGCGAACTTGAAATG
* * * *
37176898 CATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATGTGTGC-AACCTAGTATATATTTTCT
1 CATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGTGTGCGAACCCAATATATATTTTCT
37176962 ATAAATTATTTACATGAAGAGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
66 ATAAATTATTTACATGAAGAGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGT
37177026 ACCTTGAGTT
Statistics
Matches: 119, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
144 78 0.66
145 41 0.34
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (145 bp):
CATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATGTGTGCGAACCCAATATATATTTTCT
ATAAATTATTTACATGAAGAGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGGTAAGTG
TGCGAACTTGAAATG
Found at i:37184859 original size:29 final size:28
Alignment explanation
Indices: 37184823--37184900 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
37184813 TCATGAGATT
37184823 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
37184853 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
37184880 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
37184901 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:37185117 original size:173 final size:173
Alignment explanation
Indices: 37184853--37185178 Score: 564
Period size: 173 Copynumber: 1.9 Consensus size: 173
37184843 AAATTGTACA
* *
37184853 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
37184918 TGTGCGAACCCATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
66 TGTGCGAACCCATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
37184983 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
37185026 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
37185091 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCA-TATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
37185155 TTTTGGACAGCGGAAAAGGTAAGT
130 TTTTGGACAGCGGAAAAGGTAAGT
37185179 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
172 6 0.04
173 138 0.96
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (173 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:37196680 original size:28 final size:30
Alignment explanation
Indices: 37196618--37196688 Score: 96
Period size: 28 Copynumber: 2.5 Consensus size: 30
37196608 GTCATGAGAT
*
37196618 TGGCACTAAGTGTGCGGGTTTAAATTGTACA
1 TGGCACTAAGTGTGCGAGTTTAAA-TGTACA
37196649 --GCACTAAG-GTGCGAGTTTAAA-GTACA
1 TGGCACTAAGTGTGCGAGTTTAAATGTACA
37196675 TGGCACTAAGTGTG
1 TGGCACTAAGTGTG
37196689 GCGGTGTTGA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
26 5 0.14
28 20 0.56
29 11 0.31
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (30 bp):
TGGCACTAAGTGTGCGAGTTTAAATGTACA
Found at i:37196909 original size:166 final size:166
Alignment explanation
Indices: 37196649--37196965 Score: 505
Period size: 166 Copynumber: 1.9 Consensus size: 166
37196639 AAATTGTACA
* * *
37196649 GCACTAAGGTGCGAGTTTAAAGTACATGGCACTAAGTGTGGCGGTGTTGATTATTAAGCACTATG
1 GCACTAAGGTGCGAGTTTAAAGTACATGGCACTAAGTGTGGCGGTGGTGATTACTAAACACTATG
* *
37196714 TGTGCGAACCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
66 TGTGCGAACCAATATATATTTTCTATAAATTATTTACATGAAGAGTGCGACTTTACCGAGTC-AT
37196779 TTGGACAGCGGAAAAGGTAAGTGTGCGAACTTCATCG
130 TTGGACAGCGGAAAAGGTAAGTGTGCGAACTTCATCG
* * *
37196816 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGT-GC-GTGGTGATTACTAAACATTAT
1 GCACTAAG-GTGCGAGTTTAAAGTACATGGCACTAAGTGTGGCGGTGGTGATTACTAAACACTAT
*
37196879 GTGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGAGTGCGACTTTACCGAGTCA
65 GTGTGCGAA-CCAATATATATTTTCTATAAATTATTTACATGAAGAGTGCGACTTTACCGAGTCA
37196943 TTTGGACAGCGGAAAAGGTAAGT
129 TTTGGACAGCGGAAAAGGTAAGT
37196966 ACCTTGAGTT
Statistics
Matches: 139, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
165 26 0.19
166 74 0.53
167 10 0.07
168 29 0.21
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (166 bp):
GCACTAAGGTGCGAGTTTAAAGTACATGGCACTAAGTGTGGCGGTGGTGATTACTAAACACTATG
TGTGCGAACCAATATATATTTTCTATAAATTATTTACATGAAGAGTGCGACTTTACCGAGTCATT
TGGACAGCGGAAAAGGTAAGTGTGCGAACTTCATCG
Found at i:37198486 original size:38 final size:39
Alignment explanation
Indices: 37198386--37198540 Score: 208
Period size: 39 Copynumber: 4.0 Consensus size: 39
37198376 GGACATAGCT
*
37198386 GATATAGTAACTCACACAAATGCCTTC-GGACTTAGCCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAG-CCG
* **
37198425 GATATAGTATCTCGCACAAATGCCTTCGAAACTTAGCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCG
37198464 GATATAG-AACTCGCACAAATGCCTTCGGGACTTAGCCG
1 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCG
* * *
37198502 GA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCG
1 GATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCG
37198541 AGGTATCATC
Statistics
Matches: 103, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.01
38 33 0.32
39 63 0.61
40 6 0.06
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (39 bp):
GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCG
Found at i:37198486 original size:77 final size:78
Alignment explanation
Indices: 37198386--37198540 Score: 210
Period size: 77 Copynumber: 2.0 Consensus size: 78
37198376 GGACATAGCT
*
37198386 GATATAGTAACTCACACAAATGCCTTC-GGACTTAGCCCGGATA-TAGT-ATCTCGCACAAATGC
1 GATATAGTAACTCACACAAATGCCTTCGGGACTTAG-CCGGA-ACTAGTCA-CTAGCACAAATGC
37198448 CTTCGAAACTTAGCCG
63 CTTCGAAACTTAGCCG
* *
37198464 GATATAG-AACTCGCACAAATGCCTTCGGGACTTAGCCGGAACTAGTCACTAGCGCAAATGCCTT
1 GATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCGGAACTAGTCACTAGCACAAATGCCTT
**
37198528 CGGGACTTAGCCG
66 CGAAACTTAGCCG
37198541 AGGTATCATC
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
76 1 0.01
77 52 0.75
78 16 0.23
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (78 bp):
GATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCGGAACTAGTCACTAGCACAAATGCCTT
CGAAACTTAGCCG
Found at i:37199951 original size:25 final size:25
Alignment explanation
Indices: 37199923--37200001 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
37199913 CTAATGGCCG
37199923 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
37199948 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
37199970 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
37199995 ATGTGAT
1 ATGTGAT
37200002 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:37199973 original size:47 final size:47
Alignment explanation
Indices: 37199906--37200329 Score: 739
Period size: 47 Copynumber: 9.1 Consensus size: 47
37199896 ATGAAATGAT
37199906 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
37199953 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
37200000 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
37200045 ATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
37200091 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
37200138 ATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
37200184 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
37200231 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
* * * * * * * * *
37200278 ACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTG
1 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
37200325 ATAAG
1 ATAAG
37200330 TCCCGAAGGG
Statistics
Matches: 362, Mismatches: 11, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
44 24 0.07
45 20 0.06
46 66 0.18
47 252 0.70
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
Found at i:37200504 original size:37 final size:37
Alignment explanation
Indices: 37200448--37200526 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
37200438 CCGAGCTCTA
* *
37200448 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
37200485 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37200522 AAGAC
1 AAGAC
37200527 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37204155 original size:47 final size:47
Alignment explanation
Indices: 37204104--37204637 Score: 708
Period size: 47 Copynumber: 11.1 Consensus size: 47
37204094 TTAGGATTTT
*
37204104 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
37204151 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
37204202 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
37204249 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* *** *
37204296 ATGTGATGAACGTGAACCCGTATATATATGTGTGGTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
37204347 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
37204394 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCA
*
37204447 ATATGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
37204494 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
37204541 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
37204588 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
37204635 ATG
1 ATG
37204638 CGAAACGTGT
Statistics
Matches: 431, Mismatches: 42, Indels: 28
0.86 0.08 0.06
Matches are distributed among these distances:
47 301 0.70
48 1 0.00
49 4 0.01
51 83 0.19
52 1 0.00
53 41 0.10
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:37204254 original size:145 final size:144
Alignment explanation
Indices: 37204104--37204637 Score: 765
Period size: 145 Copynumber: 3.7 Consensus size: 144
37204094 TTAGGATTTT
* *
37204104 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
37204169 CGTATATATATGTGTGATAAGGCCGAATGGCTAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CG-ATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
37204234 AAGGCCGAATGGCCA
130 AAGGCCGAATGGCCA
* * * *
37204249 CTGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAACGTGAACC
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
37204314 CGTATATATATGTGTGGTAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
66 CG-ATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGAT
37204379 AAGGCCGAATGGCCA
130 AAGGCCGAATGGCCA
** * *
37204394 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAATATGATGAATG
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATG
***
37204459 TGAA--C-ATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGT
60 TGAACCCGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGT
*
37204521 GTGATAAGGCCGAATGGCTA
125 GTGATAAGGCCGAATGGCCA
* * *
37204541 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
37204606 TGA-ATATATGTG-G-TAAGGCCGAATGGCTAATG
66 CGATATATATGTGTGATAAGGCCGAATGGCCAATG
37204638 CGAAACGTGT
Statistics
Matches: 352, Mismatches: 28, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
141 58 0.16
142 1 0.00
143 6 0.02
144 1 0.00
145 155 0.44
146 2 0.01
147 88 0.25
149 1 0.00
151 40 0.11
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (144 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGATATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATA
AGGCCGAATGGCCA
Found at i:37204701 original size:46 final size:46
Alignment explanation
Indices: 37204611--37204701 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
37204601 GAACATGAAT
* * * **
37204611 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACAAGATGG
* * *
37204657 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACAAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACAAGATG
37204702 TGTATATATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACAAGATGG
Found at i:37205065 original size:37 final size:37
Alignment explanation
Indices: 37204846--37205064 Score: 348
Period size: 37 Copynumber: 5.9 Consensus size: 37
37204836 GGAAATATAT
*
37204846 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
37204883 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
37204920 TTCGAGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
37204957 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
37204994 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
37205031 TCCGGGTAAGACCCAATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
37205065 TCGTCTGAGC
Statistics
Matches: 168, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 168 1.00
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:37214048 original size:7 final size:7
Alignment explanation
Indices: 37214036--37214062 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
37214026 ATCTAAAATA
37214036 AATGTCC
1 AATGTCC
37214043 AATGTCC
1 AATGTCC
37214050 AATGTCC
1 AATGTCC
37214057 AATGTC
1 AATGTC
37214063 AAACGTTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (7 bp):
AATGTCC
Found at i:37215335 original size:41 final size:41
Alignment explanation
Indices: 37215278--37215355 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
37215268 AATTTCCTTA
*
37215278 TTTAGAAGTGTCACACGCCCGTGCATGAGGGGGCGTGGGTG
1 TTTAGAAGTGTCACACGCCCGTGCATGAGGGGCCGTGGGTG
37215319 TTTAGAAGTGTCACACGCCCGTGCATGAGGGGCCGTG
1 TTTAGAAGTGTCACACGCCCGTGCATGAGGGGCCGTG
37215356 TGATCACCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.18, C:0.22, G:0.38, T:0.22
Consensus pattern (41 bp):
TTTAGAAGTGTCACACGCCCGTGCATGAGGGGCCGTGGGTG
Done.