Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 115 of 325
Found at i:37215698 original size:41 final size:41
Alignment explanation
Indices: 37215641--37215718 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
37215631 AATTTCCTTA
*
37215641 TTTAGAAGTGTCACACGCCCGTGCATGAGGGGGCGTGGGTG
1 TTTAGAAGTGTCACACGCCCGTGCATGAGGGGCCGTGGGTG
37215682 TTTAGAAGTGTCACACGCCCGTGCATGAGGGGCCGTG
1 TTTAGAAGTGTCACACGCCCGTGCATGAGGGGCCGTG
37215719 TGATCACCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.18, C:0.22, G:0.38, T:0.22
Consensus pattern (41 bp):
TTTAGAAGTGTCACACGCCCGTGCATGAGGGGCCGTGGGTG
Found at i:37215860 original size:363 final size:363
Alignment explanation
Indices: 37215195--37215920 Score: 1434
Period size: 363 Copynumber: 2.0 Consensus size: 363
37215185 TTCCTTTAAA
*
37215195 TGGGCCTCCGAGGCCTTAAATATACATAGAGATGATTCAGGTTAGGACCGGGAACATTCCATAAC
1 TGGGCCTCCGAGGCCTTAAATATACATAGAGATGATTCAGGTTAGGACCGAGAACATTCCATAAC
37215260 TTTAGAAAAATTTCCTTATTTAGAAGTGTCACACGCCCGTGCATGAGGGGGCGTGGGTGTTTAGA
66 TTTAGAAAAATTTCCTTATTTAGAAGTGTCACACGCCCGTGCATGAGGGGGCGTGGGTGTTTAGA
37215325 AGTGTCACACGCCCGTGCATGAGGGGCCGTGTGATCACCTACGCCCATGTGGTCTAAGGCACGTC
131 AGTGTCACACGCCCGTGCATGAGGGGCCGTGTGATCACCTACGCCCATGTGGTCTAAGGCACGTC
37215390 CATGCCTTTAACCCGTGGGCAACACTGACTTTTAGACACGGCCAAGGCACACGCCCGTGGGCTCA
196 CATGCCTTTAACCCGTGGGCAACACTGACTTTTAGACACGGCCAAGGCACACGCCCGTGGGCTCA
37215455 CCCCGTGTCTAAAACTTGAGCATTCTGTTAAATTAACACGGCCCAAACACACGCCCGTGTGTCCT
261 CCCCGTGTCTAAAACTTGAGCATTCTGTTAAATTAACACGGCCCAAACACACGCCCGTGTGTCCT
37215520 ACCCGTGTACTAATTTGACTTAAAGTTTTAGGTGCAGG
326 ACCCGTGTACTAATTTGACTTAAAGTTTTAGGTGCAGG
*
37215558 TGGGCCTCCGAGGCCTTAAATATACATAGAGATGATTCAGGTTAGGACCGAGAACGTTCCATAAC
1 TGGGCCTCCGAGGCCTTAAATATACATAGAGATGATTCAGGTTAGGACCGAGAACATTCCATAAC
37215623 TTTAGAAAAATTTCCTTATTTAGAAGTGTCACACGCCCGTGCATGAGGGGGCGTGGGTGTTTAGA
66 TTTAGAAAAATTTCCTTATTTAGAAGTGTCACACGCCCGTGCATGAGGGGGCGTGGGTGTTTAGA
37215688 AGTGTCACACGCCCGTGCATGAGGGGCCGTGTGATCACCTACGCCCATGTGGTCTAAGGCACGTC
131 AGTGTCACACGCCCGTGCATGAGGGGCCGTGTGATCACCTACGCCCATGTGGTCTAAGGCACGTC
37215753 CATGCCTTTAACCCGTGGGCAACACTGACTTTTAGACACGGCCAAGGCACACGCCCGTGGGCTCA
196 CATGCCTTTAACCCGTGGGCAACACTGACTTTTAGACACGGCCAAGGCACACGCCCGTGGGCTCA
37215818 CCCCGTGTCTAAAACTTGAGCATTCTGTTAAATTAACACGGCCCAAACACACGCCCGTGTGTCCT
261 CCCCGTGTCTAAAACTTGAGCATTCTGTTAAATTAACACGGCCCAAACACACGCCCGTGTGTCCT
37215883 ACCCGTGTACTAATTTGACTTAAAGTTTTAGGTGCAGG
326 ACCCGTGTACTAATTTGACTTAAAGTTTTAGGTGCAGG
37215921 GGACACACGA
Statistics
Matches: 361, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
363 361 1.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (363 bp):
TGGGCCTCCGAGGCCTTAAATATACATAGAGATGATTCAGGTTAGGACCGAGAACATTCCATAAC
TTTAGAAAAATTTCCTTATTTAGAAGTGTCACACGCCCGTGCATGAGGGGGCGTGGGTGTTTAGA
AGTGTCACACGCCCGTGCATGAGGGGCCGTGTGATCACCTACGCCCATGTGGTCTAAGGCACGTC
CATGCCTTTAACCCGTGGGCAACACTGACTTTTAGACACGGCCAAGGCACACGCCCGTGGGCTCA
CCCCGTGTCTAAAACTTGAGCATTCTGTTAAATTAACACGGCCCAAACACACGCCCGTGTGTCCT
ACCCGTGTACTAATTTGACTTAAAGTTTTAGGTGCAGG
Found at i:37220803 original size:25 final size:25
Alignment explanation
Indices: 37220770--37220839 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
37220760 CTCTTTTAAT
*
37220770 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
37220795 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
37220820 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
37220840 AGCACTTCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:37220893 original size:16 final size:16
Alignment explanation
Indices: 37220872--37220902 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37220862 AACCCAACCC
*
37220872 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
37220888 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
37220903 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:37221082 original size:27 final size:27
Alignment explanation
Indices: 37221052--37221236 Score: 189
Period size: 27 Copynumber: 6.9 Consensus size: 27
37221042 ATGGTAATAT
* *
37221052 TACCCCACAAGGGTATCTCGATAATTC
1 TACCCTACAAGGGTATTTCGATAATTC
* * *
37221079 TACCCTACAGGGGTATTTCAATATTTC
1 TACCCTACAAGGGTATTTCGATAATTC
* * *
37221106 TACCCTATAAGGGTATTTTGGTAATTC
1 TACCCTACAAGGGTATTTCGATAATTC
37221133 TACCCTAC-AGGAGTATTTC-AGTAATTC
1 TACCCTACAAGG-GTATTTCGA-TAATTC
* * * *
37221160 TACCCTATAGGGGTATTTTGGTAATTC
1 TACCCTACAAGGGTATTTCGATAATTC
37221187 TACCCTAC-AGGGTTATTTC-AGTAATTC
1 TACCCTACAAGGG-TATTTCGA-TAATTC
*
37221214 TACCCTACAGGGGTATTTCGATA
1 TACCCTACAAGGGTATTTCGATA
37221237 TTTTACAAAT
Statistics
Matches: 127, Mismatches: 23, Indels: 16
0.77 0.14 0.10
Matches are distributed among these distances:
26 6 0.05
27 115 0.91
28 6 0.05
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGATAATTC
Found at i:37221110 original size:54 final size:54
Alignment explanation
Indices: 37221052--37221236 Score: 244
Period size: 54 Copynumber: 3.4 Consensus size: 54
37221042 ATGGTAATAT
* * * *
37221052 TACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCAATATTTC
1 TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTC
* * * *
37221106 TACCCTATAAGGGTATTTTGGTAATTCTACCCTACAGGAGTATTTCAGTAATTC
1 TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTC
* * * * *
37221160 TACCCTATAGGGGTATTTTGGTAATTCTACCCTACAGGGTTATTTCAGTAATTC
1 TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTC
*
37221214 TACCCTACAGGGGTATTTCGATA
1 TACCCTACAAGGGTATTTCGATA
37221237 TTTTACAAAT
Statistics
Matches: 117, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 117 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.35
Consensus pattern (54 bp):
TACCCTACAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTAATTC
Found at i:37221163 original size:81 final size:81
Alignment explanation
Indices: 37221073--37221232 Score: 223
Period size: 81 Copynumber: 2.0 Consensus size: 81
37221063 GGTATCTCGA
* **
37221073 TAATTCTACCCTACAGGGGTATTTCAATATTTCTACCCTATAAGGG-TATTTTGGTAATTCTACC
1 TAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTA-AAGGGTTATTTCAGTAATTCTACC
37221137 CTACAGGAGTATTTCAG
65 CTACAGGAGTATTTCAG
* *** *
37221154 TAATTCTACCCTATAGGGGTATTTTGGTAATTCTACCCTACAGGGTTATTTCAGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTAAAGGGTTATTTCAGTAATTCTACCC
*
37221219 TACAGGGGTATTTC
66 TACAGGAGTATTTC
37221233 GATATTTTAC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
80 4 0.06
81 65 0.94
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.38
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTAAAGGGTTATTTCAGTAATTCTACCC
TACAGGAGTATTTCAG
Found at i:37221282 original size:27 final size:26
Alignment explanation
Indices: 37221220--37221377 Score: 151
Period size: 27 Copynumber: 5.9 Consensus size: 26
37221210 ATTCTACCCT
*
37221220 ACAGGGGTATTTCGAT-ATTTTACAA
1 ACAGGGGTATTTTGATAATTTTACAA
* * *
37221245 ATC-GAGAGTATTTCGATAATTTCACAA
1 A-CAG-GGGTATTTTGATAATTTTACAA
*
37221272 ATCAGGGGTATTTTGGTAATTTTACAA
1 A-CAGGGGTATTTTGATAATTTTACAA
* * *
37221299 GCCAGGAGTATTTTGGTAATTTTACAA
1 -ACAGGGGTATTTTGATAATTTTACAA
37221326 ACTAGGGGTATTTT-AGTAATTTTACAA
1 AC-AGGGGTATTTTGA-TAATTTTACAA
*
37221353 ACTAGGGGTATTTTGCTAATTTTAC
1 AC-AGGGGTATTTTGATAATTTTAC
37221378 TGATCAAGGT
Statistics
Matches: 113, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
25 2 0.02
26 13 0.12
27 97 0.86
28 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.39
Consensus pattern (26 bp):
ACAGGGGTATTTTGATAATTTTACAA
Found at i:37221311 original size:54 final size:54
Alignment explanation
Indices: 37221221--37221429 Score: 192
Period size: 54 Copynumber: 3.9 Consensus size: 54
37221211 TTCTACCCTA
* * * *
37221221 CAGGGGTATTTCGAT-ATTTTACAAATC-GAGAGTATTTCGATAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAACCAG-GAGTATTTCGATAATTTTACAAAT
* * *
37221274 CAGGGGTATTTTGGTAATTTTACAAGCCAGGAGTATTTTGGTAATTTTACAAA-
1 CAGGGGTATTTTGGTAATTTTACAAACCAGGAGTATTTCGATAATTTTACAAAT
* * * * * **
37221327 CTAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGCTAATTTTACTGAT
1 C-AGGGGTATTTTGGTAATTTTACAAACCAGGAGTATTTCGATAATTTTACAAAT
* * ** *
37221382 CAAGGTTATTTTGGTAATTTTGTAAACCAAGG-GTATTTCAATAATTTT
1 CAGGGGTATTTTGGTAATTTTACAAACC-AGGAGTATTTCGATAATTTT
37221430 GTAAATCGAG
Statistics
Matches: 128, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
53 14 0.11
54 109 0.85
55 5 0.04
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAGGAGTATTTCGATAATTTTACAAAT
Found at i:37221392 original size:81 final size:81
Alignment explanation
Indices: 37221236--37221429 Score: 212
Period size: 81 Copynumber: 2.4 Consensus size: 81
37221226 GTATTTCGAT
* * * * * *
37221236 ATTTTACAAATCGAGAGTATTTCGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGC
1 ATTTTACAAACCAAGGGTATTTCAATAATTTTACAAATCAGGGGTATTTTGCTAATTTTACAAGC
*
37221301 CAGGAGTATTTTGGTA
66 AAGGAGTATTTTGGTA
* * * * *
37221317 ATTTTACAAACTAGGGGTATTTTAGTAATTTTACAAA-CTAGGGGTATTTTGCTAATTTTACTGA
1 ATTTTACAAACCAAGGGTATTTCAATAATTTTACAAATC-AGGGGTATTTTGCTAATTTTAC-AA
* *
37221381 TCAAGG-TTATTTTGGTA
64 GCAAGGAGTATTTTGGTA
**
37221398 ATTTTGTAAACCAAGGGTATTTCAATAATTTT
1 ATTTTACAAACCAAGGGTATTTCAATAATTTT
37221430 GTAAATCGAG
Statistics
Matches: 91, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
80 1 0.01
81 85 0.93
82 5 0.05
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (81 bp):
ATTTTACAAACCAAGGGTATTTCAATAATTTTACAAATCAGGGGTATTTTGCTAATTTTACAAGC
AAGGAGTATTTTGGTA
Found at i:37221412 original size:27 final size:27
Alignment explanation
Indices: 37221236--37221419 Score: 163
Period size: 27 Copynumber: 6.8 Consensus size: 27
37221226 GTATTTCGAT
* * * * *
37221236 ATTTTACAAATCGAGAGTATTTCGATA
1 ATTTTACAAACCAAGGGTATTTTGGTA
* * *
37221263 ATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
*
37221290 ATTTTACAAGCC-AGGAGTATTTTGGTA
1 ATTTTACAAACCAAGG-GTATTTTGGTA
* * *
37221317 ATTTTACAAACTAGGGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
* * *
37221344 ATTTTACAAACTAGGGGTATTTTGCTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
** * *
37221371 ATTTTACTGATCAAGGTTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
**
37221398 ATTTTGTAAACCAAGGGTATTT
1 ATTTTACAAACCAAGGGTATTT
37221420 CAATAATTTT
Statistics
Matches: 126, Mismatches: 29, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
26 2 0.02
27 122 0.97
28 2 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
ATTTTACAAACCAAGGGTATTTTGGTA
Found at i:37221452 original size:54 final size:54
Alignment explanation
Indices: 37221394--37221758 Score: 253
Period size: 54 Copynumber: 6.8 Consensus size: 54
37221384 AGGTTATTTT
* *** * *
37221394 GGTAATTTTGTAAACCAAGGGTATTTCAATAATTTTGTAAATCGAGGATAAAAC
1 GGTAATTCTGTAAACCAAGGGTAAAACAATAATTCTATAAATCGAGGATAAAAC
* * * * *
37221448 GGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAACCAAGGGTAAAACAATAATTCTATAAATCGAGGATAAAAC
* *** *** * *
37221502 GGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTCTGTAAACCAAGGGTAAAACAATAATTCTATAAATCGAGGATAAAAC
* * * * ** * *
37221556 GATAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGATAAAAT
1 GGTAATTCTGTAAACCAAGGGTAAAACAATAATTCTATAAATCGAGGATAAAAC
* * * *** * * *
37221610 GGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAAC
1 GGTAATTCTGTAAACCAAGGGTAAAACAATAATTCTATAAATCGAGGATAAAAC
* * * * *** * * *
37221664 AGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAT
1 GGTAATTCTGTAAACCAAGGGTAAAACAATAATTCTATAAATCGAGGATAAAAC
* * * ** *
37221718 GGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAA
1 GGTAATTCTGTAAACCAAGGGTAAAACAATAATTCTATAAA
37221759 ATTTGAGGGC
Statistics
Matches: 275, Mismatches: 36, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 275 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.30
Consensus pattern (54 bp):
GGTAATTCTGTAAACCAAGGGTAAAACAATAATTCTATAAATCGAGGATAAAAC
Found at i:37221453 original size:27 final size:27
Alignment explanation
Indices: 37221431--37221758 Score: 485
Period size: 27 Copynumber: 12.1 Consensus size: 27
37221421 AATAATTTTG
* *
37221431 TAAATCGAGGATAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
37221458 TAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
37221485 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* * *
37221512 TAAATTGAGGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
37221539 TAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
37221566 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* * *
37221593 TAAATCAAGGATAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
37221620 TAAATCGAGGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
37221647 TAAATTGAGGGTAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
37221674 TAAATCGAGGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
37221701 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
37221728 TAAATCGAGGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
37221755 TAAA
1 TAAA
37221759 ATTTGAGGGC
Statistics
Matches: 272, Mismatches: 29, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 272 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGGTAATTCTA
Found at i:37224013 original size:41 final size:44
Alignment explanation
Indices: 37223963--37224045 Score: 109
Period size: 44 Copynumber: 2.0 Consensus size: 44
37223953 GCGATTGAAA
*
37223963 TTAGCTTCGGCTA-CT-A-AAGGCACTAAGTGTGTGATATCGAC
1 TTAGCTTCGGCTAGCTGAGAAGGCACTAAGTGTGTGAAATCGAC
* * *
37224004 TTAGCTTCGGTTAGTTGAGATGGCACTAAGTGTGTGAAATCG
1 TTAGCTTCGGCTAGCTGAGAAGGCACTAAGTGTGTGAAATCG
37224046 TTCTATCTTC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 12 0.34
42 1 0.03
43 1 0.03
44 21 0.60
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (44 bp):
TTAGCTTCGGCTAGCTGAGAAGGCACTAAGTGTGTGAAATCGAC
Found at i:37229108 original size:40 final size:40
Alignment explanation
Indices: 37228969--37229101 Score: 153
Period size: 40 Copynumber: 3.3 Consensus size: 40
37228959 GCTACTCGTT
* * * *
37228969 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTAACTAGCA
* *
37229009 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTAGCA
* * *
37229049 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGTA
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTAAC-TAGCA
37229090 CAAA-GCCTTCGG
1 CAAATGCCTTCGG
37229102 GACTTAGCCC
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
39 3 0.04
40 72 0.88
41 7 0.09
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATATAGTAACTAGCA
Found at i:37236233 original size:36 final size:37
Alignment explanation
Indices: 37236186--37236263 Score: 106
Period size: 36 Copynumber: 2.1 Consensus size: 37
37236176 TTATTACGAA
* *
37236186 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATC-G
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
37236222 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
37236259 GTCTT
1 GTCTT
37236264 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 29 0.78
37 8 0.22
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:37236480 original size:45 final size:47
Alignment explanation
Indices: 37236376--37236792 Score: 540
Period size: 45 Copynumber: 9.1 Consensus size: 47
37236366 TGCCTTCGGA
* * * ** * * *
37236376 CTTATCACATTTATGCACTTTCACATCCATCATGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
37236423 C-CGTCACATATATACAC-TTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37236468 CTTATCAC-TATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37236513 CTTATTAC-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
37236559 CTTATCACATATATACACTTTCACATTCATCACATCGGCTTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC-CATTAGGC
*
37236607 CTTATCACATATA-ACACTTTCACATTTC-TCAC-TCGG-C--TCGGC
1 CTTATCACATATATACACTTTCACA-TTCATCACATCGGCCATTAGGC
*
37236649 CTTATCACACATATAC-CTTTCACATTCATCACATCGG-CATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37236693 CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 CTTATCACA-TATATACACTTTCACATTCATCACATCGGCCATTAGG-C
*
37236742 CTTATCAACATATATACAC-TTCACCTTCATCACATCGGCCATTAGGC
1 CTTATC-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
37236789 CTTA
1 CTTA
37236793 CTATCATTTT
Statistics
Matches: 330, Mismatches: 23, Indels: 34
0.85 0.06 0.09
Matches are distributed among these distances:
41 3 0.01
42 28 0.08
43 7 0.02
44 11 0.03
45 82 0.25
46 74 0.22
47 56 0.17
48 50 0.15
49 16 0.05
50 3 0.01
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:37240216 original size:40 final size:40
Alignment explanation
Indices: 37240147--37240316 Score: 109
Period size: 39 Copynumber: 4.2 Consensus size: 40
37240137 AGGCACGAAG
* * * *
37240147 GCCGAATACACGTCACCAGCATGATTGCTCTTCGGGATTTA
1 GCCGGATACA-GTCACTAGCACGAATGCTCTTCGGGATTTA
* * **
37240188 GCACGGA-ATA-TCACTAGCACGAAATGCTCTT-TGGAACTA
1 GC-CGGATACAGTCACTAGCACG-AATGCTCTTCGGGATTTA
*
37240227 GCCCGGATACAGTCACTAGCATGAATGCTCCTTCGGGATCTTA
1 G-CCGGATACAGTCACTAGCACGAATGCT-CTTCGGGAT-TTA
** * *
37240270 GCCGGATTTAGTAACTCGCAC-AATGC-CTTC-GGATCTTA
1 GCCGGATACAGTCACTAGCACGAATGCTCTTCGGGAT-TTA
37240308 GTCCGGATA
1 G-CCGGATA
37240317 TGGTCACTTA
Statistics
Matches: 101, Mismatches: 19, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
38 9 0.09
39 29 0.29
40 17 0.17
41 22 0.22
42 21 0.21
43 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
GCCGGATACAGTCACTAGCACGAATGCTCTTCGGGATTTA
Found at i:37240314 original size:81 final size:80
Alignment explanation
Indices: 37240152--37240316 Score: 176
Period size: 81 Copynumber: 2.0 Consensus size: 80
37240142 CGAAGGCCGA
* *
37240152 ATACACGTCACCAGCATGATTGCTCTTCGGGATTTAGCACGGAATATCACTAGCACGAAATGCTC
1 ATACACGTCACCAGCATGAATGCTCTTCGGGATTTAGCACGGAATATAACTAGCAC-AAATGCTC
*
37240217 TTTGGAACTAGCCCGG
65 TTCGGAACTAGCCCGG
* * *
37240233 ATACA-GTCACTAGCATGAATGCTCCTTCGGGATCTTAGC-CGGATTTAGTAACTCGCAC-AATG
1 ATACACGTCACCAGCATGAATGCT-CTTCGGGAT-TTAGCACGGA-ATA-TAACTAGCACAAATG
* *
37240295 C-CTTCGGATCTTAGTCCGG
62 CTCTTCGGAAC-TAGCCCGG
37240314 ATA
1 ATA
37240317 TGGTCACTTA
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
80 23 0.32
81 33 0.46
82 7 0.10
83 8 0.11
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (80 bp):
ATACACGTCACCAGCATGAATGCTCTTCGGGATTTAGCACGGAATATAACTAGCACAAATGCTCT
TCGGAACTAGCCCGG
Found at i:37240697 original size:29 final size:29
Alignment explanation
Indices: 37240658--37240736 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
37240648 CTTAATAATC
*
37240658 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
37240688 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
37240717 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
37240737 AATCTCACAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:37240794 original size:43 final size:45
Alignment explanation
Indices: 37240718--37240821 Score: 169
Period size: 43 Copynumber: 2.4 Consensus size: 45
37240708 TGCATTTCAA
*
37240718 GCCCGCACACTTAGTGCCAAATCTCACAACCGTGAACACTTA-TT
1 GCCCACACACTTAGTGCCAAATCTCACAACCGTGAACACTTATTT
37240762 GCCCACACACTTAGTGCC-AATCTCACAACCGTGAACACTTATTT
1 GCCCACACACTTAGTGCCAAATCTCACAACCGTGAACACTTATTT
*
37240806 G-CCTCACACTTAGTGC
1 GCCCACACACTTAGTGC
37240822 TGAAAACCAA
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
43 37 0.65
44 20 0.35
ACGTcount: A:0.28, C:0.35, G:0.13, T:0.24
Consensus pattern (45 bp):
GCCCACACACTTAGTGCCAAATCTCACAACCGTGAACACTTATTT
Found at i:37242742 original size:36 final size:37
Alignment explanation
Indices: 37242670--37242747 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
37242660 TTATTACGAA
* *
37242670 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
37242707 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
37242743 GTCTT
1 GTCTT
37242748 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:37242965 original size:46 final size:47
Alignment explanation
Indices: 37242915--37243289 Score: 702
Period size: 47 Copynumber: 8.0 Consensus size: 47
37242905 CTCGGCCCTG
37242915 TCACATATATACACTTTCACATTCATCACAT-GGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
37242961 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
37243008 T-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
37243054 T-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
37243100 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
37243147 TCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
37243194 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
37243243 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
37243290 CTATCATTTC
Statistics
Matches: 323, Mismatches: 2, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
46 123 0.38
47 154 0.48
49 46 0.14
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (47 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:37243229 original size:96 final size:94
Alignment explanation
Indices: 37242915--37243289 Score: 702
Period size: 96 Copynumber: 4.0 Consensus size: 94
37242905 CTCGGCCCTG
37242915 TCACATATATACACTTTCACATTCATCACAT-GGCCATTAGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
37242979 ACATTCATCACATCGGCCATTAGGCCTTA
66 ACATTCATCACATCGGCCATTAGGCCTTA
37243008 T-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT-ACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
37243071 ACATTCATCACATCGGCCATTAGGCCTTA
66 ACATTCATCACATCGGCCATTAGGCCTTA
*
37243100 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
37243165 ACATTCATCACATCGGCCATTAGGCCTTA
66 ACATTCATCACATCGGCCATTAGGCCTTA
37243194 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
37243259 TCACATTCATCACATCGGCCATTAGGCCTTA
64 TCACATTCATCACATCGGCCATTAGGCCTTA
37243290 CTATCATTTC
Statistics
Matches: 275, Mismatches: 2, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
92 75 0.27
93 63 0.23
94 48 0.17
96 89 0.32
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (94 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTC
ACATTCATCACATCGGCCATTAGGCCTTA
Found at i:37247239 original size:40 final size:40
Alignment explanation
Indices: 37247207--37247598 Score: 590
Period size: 40 Copynumber: 9.8 Consensus size: 40
37247197 CCAGCATGAT
* * *
37247207 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
37247247 TGCTCTTTGGG-GTTAGCACGGATATATTCACGAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
37247287 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
37247327 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
37247367 TGCTCCTT-GGGACTTAGCCCAGATATATCACTAGCACGAA
1 TGCT-CTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
37247407 TGCTCCTCGGGACTTAGCTCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
37247447 TGCTCCTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
37247487 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAG
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
37247527 TGCTCTTCGGGACTTAGCCCGAATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
37247567 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
37247599 CTCAATTCTC
Statistics
Matches: 320, Mismatches: 28, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
39 14 0.04
40 292 0.91
41 14 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:37248926 original size:37 final size:37
Alignment explanation
Indices: 37248867--37249080 Score: 296
Period size: 37 Copynumber: 5.9 Consensus size: 37
37248857 AGCTCAGACG
* * *
37248867 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
37248904 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
37248941 TAATCTCCACACGTAGTCATCGGGTCTTACCCGG---
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
37248975 --A-CTCCACACATATTCATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
37249009 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
37249046 AAATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
37249081 ATATATTTCC
Statistics
Matches: 157, Mismatches: 14, Indels: 12
0.86 0.08 0.07
Matches are distributed among these distances:
31 27 0.17
32 1 0.01
36 1 0.01
37 128 0.82
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:37249017 original size:68 final size:68
Alignment explanation
Indices: 37248908--37249044 Score: 240
Period size: 68 Copynumber: 2.0 Consensus size: 68
37248898 CGGACAAAAT
*
37248908 CTCCACACGTAGTCATCGGGTCTTACCCAGACATAATCTCCACACGTAGTCATCGGGTCTTACCC
1 CTCCACACATAGTCATCGGGTCTTACCCAGACATAATCTCCACACGTAGTCATCGGGTCTTACCC
37248973 GGA
66 GGA
*
37248976 CTCCACACATATTCATCGGGTCTTACCC-GAACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CTCCACACATAGTCATCGGGTCTTACCCAG-ACATAATCTCCACACGTAGTCATCGGGTCTTACC
37249040 CGGA
65 CGGA
37249044 C
1 C
37249045 AAAATCTCCA
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
67 1 0.02
68 65 0.98
ACGTcount: A:0.24, C:0.34, G:0.18, T:0.24
Consensus pattern (68 bp):
CTCCACACATAGTCATCGGGTCTTACCCAGACATAATCTCCACACGTAGTCATCGGGTCTTACCC
GGA
Found at i:37249053 original size:105 final size:105
Alignment explanation
Indices: 37248885--37249080 Score: 347
Period size: 105 Copynumber: 1.9 Consensus size: 105
37248875 ACATGAAGTT
* *
37248885 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACCCAGACATAATCTCCA
1 ATCGGGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCCA
*
37248950 CACGTAGTCATCGGGTCTTACCCGGACTCCACACATATTC
66 CACGTAGTCATCGGGTCTCACCCGGACTCCACACATATTC
* *
37248990 ATCGGGTCTTACCCGAACATAATCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCA
1 ATCGGGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCCA
37249055 CACGTAGTCATCGGGTCTCACCCGGA
66 CACGTAGTCATCGGGTCTCACCCGGA
37249081 ATATATTTCC
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
105 86 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (105 bp):
ATCGGGTCTTACCCGAACAAAATCTCCACACGTAGTCATCGGGTCTTACCCAGACAAAATCTCCA
CACGTAGTCATCGGGTCTCACCCGGACTCCACACATATTC
Found at i:37249282 original size:46 final size:46
Alignment explanation
Indices: 37249225--37249500 Score: 143
Period size: 47 Copynumber: 5.9 Consensus size: 46
37249215 TATATATACA
* * *
37249225 CATCTCGTACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACATATCTCACATTAGCCATTCGGCCTTACCACATATC
* * *
37249271 CATCTCATACATGTTTCGCATTAGCCATTCGGCCTTACCACATAT-
1 CATCTCATACATATCTCACATTAGCCATTCGGCCTTACCACATATC
*
37249316 -AT-TCATGTTCACAT-TCATCACATTGGCCATTCGGCCTTATCACACATA-C
1 CATCTCA---T-ACATATC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* *
37249365 GCATGT--TCACAT-TCATCACATTGGCCATTCGGCCTTATCACACATA-C
1 -CATCTCAT-ACATATC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* *
37249412 GCATGT--TCACAT-TCATCACATTGGCCATTCGGCCTTATCACACATA-C
1 -CATCTCAT-ACATATC-TCACATTAGCCATTCGGCCTTA-C-CACATATC
* *
37249459 GCATGT--TCACAT-TCATCACATTGGCCATTCGGCCTTACCACA
1 -CATCTCAT-ACATATC-TCACATTAGCCATTCGGCCTTACCACA
37249501 CATATATATA
Statistics
Matches: 210, Mismatches: 9, Indels: 23
0.87 0.04 0.10
Matches are distributed among these distances:
43 3 0.01
44 2 0.01
45 4 0.02
46 42 0.20
47 149 0.71
48 1 0.00
49 6 0.03
51 2 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.32
Consensus pattern (46 bp):
CATCTCATACATATCTCACATTAGCCATTCGGCCTTACCACATATC
Found at i:37249351 original size:47 final size:47
Alignment explanation
Indices: 37249289--37249722 Score: 643
Period size: 47 Copynumber: 9.1 Consensus size: 47
37249279 ACATGTTTCG
* * * **
37249289 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37249336 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37249383 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37249430 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *** *
37249477 CATTGGCCATTCGGCCTTACCACACATATATATACGGGTTCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
37249528 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
37249575 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
37249622 CATTAGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
37249673 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
37249720 CAT
1 CAT
37249723 AAAATCCTAA
Statistics
Matches: 351, Mismatches: 28, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
47 266 0.76
51 85 0.24
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:37249574 original size:145 final size:145
Alignment explanation
Indices: 37249289--37249722 Score: 723
Period size: 145 Copynumber: 3.0 Consensus size: 145
37249279 ACATGTTTCG
* * * **
37249289 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
***
37249354 ATCACACATACGCAT----GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
66 ATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
*
37249415 TGTTCACATTCATCA
131 TGTTCACATCCATCA
37249430 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
37249495 ACCACACATATATATACGGGTTCACGTTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
66 ATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
37249560 TGTTCACATCCATCA
131 TGTTCACATCCATCA
* *
37249575 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTAGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
37249640 ATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
66 ATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
37249705 TGTTCACATCCATCA
131 TGTTCACATCCATCA
37249720 CAT
1 CAT
37249723 AAAATCCTAA
Statistics
Matches: 273, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
141 71 0.26
145 202 0.74
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (145 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
TGTTCACATCCATCA
Found at i:37258689 original size:68 final size:65
Alignment explanation
Indices: 37258575--37258823 Score: 186
Period size: 68 Copynumber: 3.8 Consensus size: 65
37258565 CAGATGGTAT
* ** * * * *
37258575 GTAGCTAGGTCACATGTATGGTGCTGAGTGTACATCATGT-GTACAAGAGAGCTACGAGACATTA
1 GTAGCTAGGTCGCATGCGTGATACTGTGTGTACACCATGTAG-ACAAGAGAGCTACGAGA-A-TA
37258639 TGAC
63 T-AC
* *
37258643 GTAGCTAGGTCGCATGGGTGATACTGTGTGTACACCATGTAGACAAGAGAGCTACG-G-ATATAT
1 GTAGCTAGGTCGCATGCGTGATACTGTGTGTACACCATGTAGACAAGAGAGCTACGAGAATATAC
* * * * *
37258706 GTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAG-ATA
1 GTAGCTAGGTCGCATGCGT-GATAC-TGTG-TGTACACCATGTAGACAAGAGAGCTACGAGAATA
*
37258770 AAC
63 TAC
* * * * ** *
37258773 -TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 GTAGCTAGGTCGCATGCGTGATACTGTGTGTACACCATGTAG-ACAAGAGAGC
37258824 CGAACTATAT
Statistics
Matches: 148, Mismatches: 27, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 38 0.26
64 7 0.05
65 7 0.05
66 41 0.28
67 6 0.04
68 47 0.32
69 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (65 bp):
GTAGCTAGGTCGCATGCGTGATACTGTGTGTACACCATGTAGACAAGAGAGCTACGAGAATATAC
Found at i:37264673 original size:28 final size:28
Alignment explanation
Indices: 37264641--37264708 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 28
37264631 TGAGATTGGT
*
37264641 ACTAAGTGTGCGAGTTTAATT-GTATAGC
1 ACTAAGTGTGCGAGTTTAATTATTA-AGC
*
37264669 ACTAAGTGTGCGAGTTTGATTATTAAGC
1 ACTAAGTGTGCGAGTTTAATTATTAAGC
37264697 ACTAAGTGTGCG
1 ACTAAGTGTGCG
37264709 GACTTACTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
ACTAAGTGTGCGAGTTTAATTATTAAGC
Found at i:37273843 original size:48 final size:50
Alignment explanation
Indices: 37273781--37273881 Score: 125
Period size: 48 Copynumber: 2.1 Consensus size: 50
37273771 TTGATATGCA
* * *
37273781 TGATTCCATGTAAGAACATGTCTGGGACATGGCATTAGCAT-CGA-TATG
1 TGATCCCACGTAAGAACATATCTGGGACATGGCATTAGCATCCGACTATG
* * * *
37273829 TGATCCCACGTAAGACCATATCTGGGATATGTCATTGGCATCCGACTATG
1 TGATCCCACGTAAGAACATATCTGGGACATGGCATTAGCATCCGACTATG
37273879 TGA
1 TGA
37273882 ATGTGATTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
48 34 0.77
49 3 0.07
50 7 0.16
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (50 bp):
TGATCCCACGTAAGAACATATCTGGGACATGGCATTAGCATCCGACTATG
Found at i:37275070 original size:36 final size:35
Alignment explanation
Indices: 37275018--37275094 Score: 127
Period size: 36 Copynumber: 2.2 Consensus size: 35
37275008 TATCTAGCTA
*
37275018 AATTGTGGAAATGACTAAGAACAAGGGCTATTTGGT
1 AATTTTGGAAATGACTAAGAACAAGGGCTA-TTGGT
*
37275054 AATTTTGGAAATGACTAAGTACAAGGGCTATTGGT
1 AATTTTGGAAATGACTAAGAACAAGGGCTATTGGT
37275089 AATTTT
1 AATTTT
37275095 CTCTTCTCCT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 11 0.28
36 28 0.72
ACGTcount: A:0.35, C:0.08, G:0.25, T:0.32
Consensus pattern (35 bp):
AATTTTGGAAATGACTAAGAACAAGGGCTATTGGT
Found at i:37286273 original size:22 final size:22
Alignment explanation
Indices: 37286246--37286306 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
37286236 AATGTGAAAC
37286246 AAAAAGAAAAAAAAGAAGTT-G
1 AAAAAGAAAAAAAAGAAGTTAG
*
37286267 AAGAAAGAAAGAAAATG-AGTTAG
1 AA-AAAGAAA-AAAAAGAAGTTAG
*
37286290 AAAAAGAAACAAAAGAA
1 AAAAAGAAAAAAAAGAA
37286307 AAAGACGAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
21 6 0.18
22 19 0.58
23 8 0.24
ACGTcount: A:0.70, C:0.02, G:0.20, T:0.08
Consensus pattern (22 bp):
AAAAAGAAAAAAAAGAAGTTAG
Found at i:37293384 original size:33 final size:33
Alignment explanation
Indices: 37293334--37293455 Score: 199
Period size: 33 Copynumber: 3.7 Consensus size: 33
37293324 CGAGTGGCGC
*
37293334 GTGAAACGAAGATACCGTAACTTGTGATGGTGT
1 GTGAAACAAAGATACCGTAACTTGTGATGGTGT
* *
37293367 GTGACACAAAGATACCGTAACTTTTGATGGTGT
1 GTGAAACAAAGATACCGTAACTTGTGATGGTGT
*
37293400 GTGAAACAAAGATACCATAACTTGTGATGGTGT
1 GTGAAACAAAGATACCGTAACTTGTGATGGTGT
*
37293433 GTGAAACAAAGATACTGTAACTT
1 GTGAAACAAAGATACCGTAACTT
37293456 ATGACGGCGC
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 81 1.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (33 bp):
GTGAAACAAAGATACCGTAACTTGTGATGGTGT
Found at i:37302241 original size:3 final size:3
Alignment explanation
Indices: 37302233--37302266 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
37302223 GTAGAAAAAG
37302233 AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
37302267 AGTATTTGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:37302256 original size:14 final size:14
Alignment explanation
Indices: 37302237--37302265 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37302227 AAAAAGAATA
37302237 ATAATAATAATAAT
1 ATAATAATAATAAT
37302251 ATAATAATAATAAT
1 ATAATAATAATAAT
37302265 A
1 A
37302266 AAGTATTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:37302256 original size:17 final size:17
Alignment explanation
Indices: 37302234--37302266 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
37302224 TAGAAAAAGA
37302234 ATAATAATAATAATAAT
1 ATAATAATAATAATAAT
37302251 ATAATAATAATAATAA
1 ATAATAATAATAATAA
37302267 AGTATTTGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAATAATAATAATAAT
Found at i:37308616 original size:40 final size:40
Alignment explanation
Indices: 37308408--37308612 Score: 313
Period size: 40 Copynumber: 5.1 Consensus size: 40
37308398 CGGGCTTTAA
** *
37308408 CCGGATATAGCGACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** * *
37308448 CCGGATATAGTAGTTTGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
37308488 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
37308528 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37308568 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
37308608 CCGGA
1 CCGGA
37308613 ATTATCATCC
Statistics
Matches: 151, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 1 0.01
40 150 0.99
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37311862 original size:39 final size:39
Alignment explanation
Indices: 37311658--37311880 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
37311648 TTGAATGCTG
* * * * * *
37311658 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
37311698 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
37311738 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
37311778 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
37311818 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
37311857 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37311881 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:37311900 original size:79 final size:80
Alignment explanation
Indices: 37311738--37311915 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
37311728 AGATACAAGT
* * * *
37311738 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
37311803 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
37311818 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
37311882 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
37311897 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37311916 TATGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:37319810 original size:39 final size:39
Alignment explanation
Indices: 37319606--37319828 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
37319596 TTGAATGCTG
* * * * * *
37319606 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
37319646 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
37319686 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
37319726 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
37319766 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
37319805 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
37319829 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:37319848 original size:79 final size:80
Alignment explanation
Indices: 37319686--37319863 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
37319676 AGATACAAGT
* * * *
37319686 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
37319751 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
37319766 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
37319830 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
37319845 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
37319864 TATGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:37328615 original size:54 final size:54
Alignment explanation
Indices: 37328568--37328698 Score: 192
Period size: 54 Copynumber: 2.4 Consensus size: 54
37328558 ATTACCAAAG
*
37328568 TACCCTCGATTTATAAAATTA-TCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACT-GTTTTACCCTCGATTTACAGAATTACCATTT
* * * *
37328622 TACCCTCGATTAATAGAATTACTGTTTTACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
*
37328676 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTATAAAATTACT
37328699 AAAATACCCT
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 67 0.99
55 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
Found at i:37328699 original size:27 final size:27
Alignment explanation
Indices: 37328568--37328698 Score: 174
Period size: 27 Copynumber: 4.9 Consensus size: 27
37328558 ATTACCAAAG
* *
37328568 TACCCTCGATTTATAAAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
*
37328595 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
37328622 TACCCTCGATTAATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
37328649 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
37328676 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
37328699 AAAATACCCT
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:37328706 original size:27 final size:27
Alignment explanation
Indices: 37328676--37328922 Score: 286
Period size: 27 Copynumber: 9.2 Consensus size: 27
37328666 ATTACTATTT
** *
37328676 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * *
37328703 TACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
37328730 TACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
37328757 TACCCTAG-TTTGTAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
37328783 TACCC-CTGGTTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
*
37328810 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
*
37328837 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* *
37328864 TACCACT-GGTTTGTAAAATTACCGAAA
1 TACC-CTCGATTTGTAAAATTACCAAAA
* *
37328891 TACCTTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
37328918 TACCC
1 TACCC
37328923 CTGATTTACA
Statistics
Matches: 187, Mismatches: 26, Indels: 14
0.82 0.11 0.06
Matches are distributed among these distances:
26 24 0.13
27 161 0.86
28 2 0.01
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:37328707 original size:54 final size:54
Alignment explanation
Indices: 37328595--37328762 Score: 156
Period size: 54 Copynumber: 3.1 Consensus size: 54
37328585 ATTATCGTTT
* * * * ****
37328595 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTAATAGAATTACTGTTT
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTAACAAAATTACTAAAA
* *
37328649 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTAACAAAATTACTAAAA
* * * *** * ** *
37328703 TACCCTTGGTTTATAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTAACAAAATTACTAAAA
37328757 TACCCT
1 TACCCT
37328763 AGTTTGTAAA
Statistics
Matches: 92, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.35
Consensus pattern (54 bp):
TACCCTTGATTTACAGAATTACCATTTTACCCTCGATTAACAAAATTACTAAAA
Found at i:37328882 original size:81 final size:80
Alignment explanation
Indices: 37328690--37328924 Score: 373
Period size: 81 Copynumber: 2.9 Consensus size: 80
37328680 CTCGATTTAC
* * **
37328690 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCC-TGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
37328755 AATA-CCCTAGTTTGT
65 AATACCCCTAGTTTGT
37328770 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
37328835 AATACCCCTAGTTTGT
65 AATACCCCTAGTTTGT
* * *
37328851 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCTTCAATTTGTAAAATTACCAA
1 AAAATTACTAAAATACC-CTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAA
37328916 AATACCCCT
65 AATACCCCT
37328925 GATTTACAAA
Statistics
Matches: 145, Mismatches: 7, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
80 63 0.43
81 82 0.57
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (80 bp):
AAAATTACTAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAA
ATACCCCTAGTTTGT
Found at i:37328945 original size:54 final size:53
Alignment explanation
Indices: 37328690--37328949 Score: 233
Period size: 54 Copynumber: 4.8 Consensus size: 53
37328680 CTCGATTTAC
* * * * **
37328690 AAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAATA-CCCTCGATCAGT
1 AAAATTACCAAAATACCCCTGATTTATAAAATTA-CAAAATACCCCT-AATTTGT
* **
37328744 AAAATTACCAAAATA-CCCT-AGTTTGTAAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTATAAAATTAC-AAAATACCCCTAATTTGT
* * *
37328797 AAAATTACCAAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCT-GATTTATAAAATTA-CAAAATACCCCTAATTTGT
* * * * *
37328851 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATA-CCTTCAATTTGT
1 AAAATTACCAAAATACCCCTGATTTATAAAATTA-CAAAATACCCCT-AATTTGT
* *
37328905 AAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACCC
1 AAAATTACCAAAATACCCCTGATTTATAAAATTACA-AAATACCC
37328950 TTGACTTTCT
Statistics
Matches: 176, Mismatches: 20, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
52 1 0.01
53 47 0.27
54 121 0.69
55 7 0.04
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTGATTTATAAAATTACAAAATACCCCTAATTTGT
Found at i:37329096 original size:27 final size:27
Alignment explanation
Indices: 37329066--37329125 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
37329056 ACCTCTATTA
*
37329066 GGTAAAAAAACCGTAAAGTCCCTGTAG
1 GGTAAAAAAACCGTAAAGCCCCTGTAG
***
37329093 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAAAAACCGTAAAGCCCCTGTAG
37329120 GGTAAA
1 GGTAAA
37329126 GTGACCGTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (27 bp):
GGTAAAAAAACCGTAAAGCCCCTGTAG
Found at i:37329126 original size:27 final size:27
Alignment explanation
Indices: 37329075--37329157 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
37329065 AGGTAAAAAA
*
37329075 ACCGTAAAGTCCCTGTAGGGTAAAGTG
1 ACCGTAAAGCCCCTGTAGGGTAAAGTG
37329102 ACCGTAAAGCCCCTGTAGGGTAAAGTG
1 ACCGTAAAGCCCCTGTAGGGTAAAGTG
* * *
37329129 ACCGTAATA-CCTCTGTATGGTAAAATG
1 ACCGTAA-AGCCCCTGTAGGGTAAAGTG
37329156 AC
1 AC
37329158 GAATATGCCC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.23
Consensus pattern (27 bp):
ACCGTAAAGCCCCTGTAGGGTAAAGTG
Found at i:37330038 original size:52 final size:51
Alignment explanation
Indices: 37329960--37330111 Score: 254
Period size: 52 Copynumber: 3.0 Consensus size: 51
37329950 GAGGAAGTGC
37329960 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGCTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAG-TTATTG
*
37330012 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAG-TTATTG
*
37330064 AAAAGGGCTT-TGCCCCAGTTTACAGAAAAGGGCTT-TGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTATT
37330112 AAAGAGGCTA
Statistics
Matches: 96, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
49 5 0.05
50 7 0.07
51 24 0.25
52 60 0.62
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTATTG
Found at i:37330083 original size:25 final size:26
Alignment explanation
Indices: 37329960--37330108 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
37329950 GAGGAAGTGC
37329960 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
37329986 AAAAGGGCTTATGCCCCAGCTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
37330012 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
37330038 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
37330064 AAAAGGGCTT-TGCCCCAGTTTACAG
1 AAAAGGGCTTATGCCCCAGTTTACCG
37330089 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
37330109 ATTAAAGAGG
Statistics
Matches: 111, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
25 32 0.29
26 79 0.71
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:37330312 original size:42 final size:42
Alignment explanation
Indices: 37330253--37330344 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
37330243 TAGTCTCCCC
* ** *
37330253 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
37330295 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
37330337 AAATGGGC
1 AAATGGGC
37330345 CTAAGGGTCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:37330445 original size:31 final size:31
Alignment explanation
Indices: 37330368--37330446 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
37330358 CGTTTACAGT
*
37330368 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
37330399 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
37330430 AAAGGATTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
37330447 AACCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:37342870 original size:22 final size:22
Alignment explanation
Indices: 37342832--37342878 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
37342822 CTTGGTAACA
37342832 TATCCTGAATATTTAAAGAT-T
1 TATCCTGAATATTTAAAGATAT
37342853 TATCC-GAATCATATTAAAGATAT
1 TATCCTGAAT-AT-TTAAAGATAT
37342876 TAT
1 TAT
37342879 TGATGTTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.17
21 7 0.30
22 8 0.35
23 4 0.17
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (22 bp):
TATCCTGAATATTTAAAGATAT
Found at i:37344641 original size:37 final size:37
Alignment explanation
Indices: 37344588--37344690 Score: 188
Period size: 37 Copynumber: 2.8 Consensus size: 37
37344578 CGAATAGTCC
*
37344588 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
37344625 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
37344662 CCACACGTAGTCATCGGGTCTTGCCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
37344691 ATACATTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.22
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:37344795 original size:48 final size:48
Alignment explanation
Indices: 37344734--37345058 Score: 533
Period size: 48 Copynumber: 6.8 Consensus size: 48
37344724 TGTTACAACA
* * *
37344734 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
37344782 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
37344830 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
37344878 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
37344926 TTCACATTCGTCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
37344974 TTCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
37345022 TTCACATTAGCCATTCGGCTTCACCACACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
37345059 TTATCTTGTA
Statistics
Matches: 257, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 257 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:37344994 original size:144 final size:144
Alignment explanation
Indices: 37344734--37345058 Score: 605
Period size: 144 Copynumber: 2.3 Consensus size: 144
37344724 TGTTACAACA
37344734 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
*
37344799 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATATACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATACACA
37344864 TATCACACATATAT
131 TATCACACATATAT
*
37344878 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGTCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
37344943 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATACACA
66 GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATACACA
37345008 TATCACACATATAT
131 TATCACACATATAT
* * *
37345022 TTCACATTAGCCATTCGGCTTCACCACACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
37345059 TTATCTTGTA
Statistics
Matches: 176, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
144 176 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (144 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTCGCCATTCG
GCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCGGCTTTACCACATACACA
TATCACACATATAT
Found at i:37348156 original size:40 final size:40
Alignment explanation
Indices: 37348108--37348425 Score: 465
Period size: 40 Copynumber: 8.0 Consensus size: 40
37348098 GCCCGACTAC
* * * *
37348108 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * * ** ***
37348148 ATAACACCAACACGAATGCTCTTCGGGGTTTAGCATAGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
37348188 ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
37348228 ACATCACTAGCACGAATGCTCTTCGGGACTTAACCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
37348268 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGTT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
37348308 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
37348348 ACATCACTAGCACGAATGCTCTTCGGGACTTAACCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
37348388 ACATCACTAGCTCGAATGCTCTTCGGGACTTAGCCCGG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGG
37348426 CTATACAACT
Statistics
Matches: 249, Mismatches: 29, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 249 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:37350579 original size:48 final size:48
Alignment explanation
Indices: 37350484--37350855 Score: 593
Period size: 48 Copynumber: 7.8 Consensus size: 48
37350474 TGTTACAACA
* * *
37350484 TTCACATTAGCCATTCGGCTTTA-CACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
37350531 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
37350579 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
37350627 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
37350675 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
37350723 TTCACATTCGTCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
37350771 TTCACATTAGCCATTCGGCTTTACCACATACACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
37350819 TTCACATTAGCCATTCAGCTTCACCACACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
37350856 ATTTATCTTG
Statistics
Matches: 303, Mismatches: 21, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
47 22 0.07
48 281 0.93
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:37361750 original size:24 final size:24
Alignment explanation
Indices: 37361710--37361768 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
37361700 TAGTTGTTTC
*
37361710 TTCCTT-TATTTCCTCCTT-TTCTGT
1 TTCCTTCT-TTTCCTCCTTCTCCT-T
* *
37361734 TTTCTTCTTTTCTTCCTTCTCCTT
1 TTCCTTCTTTTCCTCCTTCTCCTT
37361758 TTCCTTCTTTT
1 TTCCTTCTTTT
37361769 TCTTTATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 25 0.86
25 4 0.14
ACGTcount: A:0.02, C:0.31, G:0.02, T:0.66
Consensus pattern (24 bp):
TTCCTTCTTTTCCTCCTTCTCCTT
Found at i:37367735 original size:43 final size:43
Alignment explanation
Indices: 37367687--37367857 Score: 186
Period size: 43 Copynumber: 4.0 Consensus size: 43
37367677 ATTACCAACA
* *
37367687 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
37367730 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TAT
* * * * * *
37367774 T-TGATTTCGTGTAATACCTTGTCTGGGACAATGACATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * *
37367815 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
37367858 GAGCTTTATG
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.02
42 7 0.07
43 94 0.88
44 4 0.04
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:37371083 original size:16 final size:16
Alignment explanation
Indices: 37371054--37371100 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
37371044 ATCTTCGTTG
37371054 AATCCCTAAAATCTTAA
1 AATCCCT-AAATCTTAA
37371071 AAT-CCTCAAATCTTAA
1 AATCCCT-AAATCTTAA
37371087 AATCCCTAAATCTT
1 AATCCCTAAATCTT
37371101 TAGCAATCTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 22 0.79
17 6 0.21
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.32
Consensus pattern (16 bp):
AATCCCTAAATCTTAA
Found at i:37371474 original size:117 final size:118
Alignment explanation
Indices: 37371267--37371478 Score: 356
Period size: 117 Copynumber: 1.8 Consensus size: 118
37371257 TTCGGTTTGT
* *
37371267 TGGTTATTTGTGATTTATTATTGCAATTTTTAGTGCCACAATGTAGGGTTTCTTTTGTCGATTTG
1 TGGTTATTTGTGATTTATTATTGCAATTTTTAATGCCACAATGTAGGGTTTCTTTTGTCGATTTA
*
37371332 TGATGCGAAAGTGGTCCTGATGTTGTTGATAAAGCTATTGTTAAAATTGTAGA
66 TGATGCGAAAGTGGTCCCGATGTTGTTGATAAAGCTATTGTTAAAATTGTAGA
* *
37371385 TGGTTATTTGTGATTTATTATTGCAA-TTTTAATGCCACAATGTAGGGTTTGTTTTGTTGATTTA
1 TGGTTATTTGTGATTTATTATTGCAATTTTTAATGCCACAATGTAGGGTTTCTTTTGTCGATTTA
37371449 TGATGCGATAA-TGGTCCCGATGTTGTTGAT
66 TGATGCGA-AAGTGGTCCCGATGTTGTTGAT
37371479 TTCTATTACC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
117 60 0.68
118 28 0.32
ACGTcount: A:0.23, C:0.08, G:0.24, T:0.45
Consensus pattern (118 bp):
TGGTTATTTGTGATTTATTATTGCAATTTTTAATGCCACAATGTAGGGTTTCTTTTGTCGATTTA
TGATGCGAAAGTGGTCCCGATGTTGTTGATAAAGCTATTGTTAAAATTGTAGA
Found at i:37372026 original size:41 final size:41
Alignment explanation
Indices: 37371975--37372211 Score: 224
Period size: 41 Copynumber: 5.8 Consensus size: 41
37371965 GATTCAGAGT
* * * *
37371975 TACCGGAGTATAAAGAGGGGCATGTATGTGCAATTCAAGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAAGGG
* ** * *
37372016 TACCGAAGTATAATTAGGGGCACGTATGTGTAATTTAAGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAAGGG
* ** * *
37372057 TACCGAAGTACAAACAGAGGCACAAATGTGCAATTTAGGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAAGGG
* * *
37372098 TATCGAAGTACAAACAAGGGCACGTATGTGTAATTCAAGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAAGGG
* * * ** *
37372139 TACCAAAGTACAATCAAGGATATGTATGTGCAATTC-AGGG
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAAGGG
* * * *
37372179 CACCAAAGTACAAACAGAGGCACATATGTGCAA
1 TACCGAAGTACAAACAGGGGCACGTATGTGCAA
37372212 ATCAGGCAAT
Statistics
Matches: 159, Mismatches: 37, Indels: 1
0.81 0.19 0.01
Matches are distributed among these distances:
40 29 0.18
41 130 0.82
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.22
Consensus pattern (41 bp):
TACCGAAGTACAAACAGGGGCACGTATGTGCAATTCAAGGG
Found at i:37372030 original size:21 final size:20
Alignment explanation
Indices: 37372006--37372066 Score: 52
Period size: 21 Copynumber: 3.0 Consensus size: 20
37371996 ATGTATGTGC
37372006 AATTCAAGGGTACCGAAGTAT
1 AATT-AAGGGTACCGAAGTAT
* * * *
37372027 AATTAGGGGCA-CGTATGTGT
1 AATTAAGGGTACCG-AAGTAT
37372047 AATTTAAGGGTACCGAAGTA
1 AA-TTAAGGGTACCGAAGTA
37372067 CAAACAGAGG
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
19 2 0.07
20 11 0.38
21 14 0.48
22 2 0.07
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (20 bp):
AATTAAGGGTACCGAAGTAT
Found at i:37372469 original size:24 final size:24
Alignment explanation
Indices: 37372440--37372486 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
37372430 AATAAATCTC
37372440 GAACATTCAATTCAATCCATAAAT
1 GAACATTCAATTCAATCCATAAAT
37372464 GAACATTCAATTCAATCCATAAA
1 GAACATTCAATTCAATCCATAAA
37372487 CCATTTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.47, C:0.21, G:0.04, T:0.28
Consensus pattern (24 bp):
GAACATTCAATTCAATCCATAAAT
Found at i:37374036 original size:35 final size:35
Alignment explanation
Indices: 37373990--37374059 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
37373980 TTATACTTTT
37373990 ACTTAATATTCTGGTCATGATGTTTTCTTGAGTCA
1 ACTTAATATTCTGGTCATGATGTTTTCTTGAGTCA
37374025 ACTTAATATTCTGGTCATGATGTTTTCTTGAGTCA
1 ACTTAATATTCTGGTCATGATGTTTTCTTGAGTCA
37374060 TAGTCACTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.23, C:0.14, G:0.17, T:0.46
Consensus pattern (35 bp):
ACTTAATATTCTGGTCATGATGTTTTCTTGAGTCA
Found at i:37374998 original size:51 final size:51
Alignment explanation
Indices: 37374942--37375078 Score: 146
Period size: 51 Copynumber: 2.8 Consensus size: 51
37374932 CTACCTTATA
*
37374942 ACATGTAACACATCCATAATAAACTCGGACCTCTCAACGAGCTCGGATGTT
1 ACATGTAACACATCCATAATAAACTCGGACCACTCAACGAGCTCGGATGTT
* * * * *
37374993 ACATGTATCGCATCCATTATGAACTCGGACCACTCAATGAGCTCGGATG--
1 ACATGTAACACATCCATAATAAACTCGGACCACTCAACGAGCTCGGATGTT
* *
37375042 -C---T--CACATCCATAATGAACTCGGACCACTCAACAAGCT
1 ACATGTAACACATCCATAATAAACTCGGACCACTCAACGAGCT
37375079 TAGATGTCAC
Statistics
Matches: 76, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
43 31 0.41
45 1 0.01
48 1 0.01
51 43 0.57
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (51 bp):
ACATGTAACACATCCATAATAAACTCGGACCACTCAACGAGCTCGGATGTT
Found at i:37375144 original size:43 final size:43
Alignment explanation
Indices: 37375013--37375146 Score: 146
Period size: 43 Copynumber: 3.1 Consensus size: 43
37375003 CATCCATTAT
** * * ** * *
37375013 GAACTCGGACCACTCAATGAGCTCGGATGCTCACATCCATAAT
1 GAACTCGGACCACTCAACAAGTTCGGATTCTCACATATATCAC
* *
37375056 GAACTCGGACCACTCAACAAGCTT-AGA-TGTCACATATATCAC
1 GAACTCGGACCACTCAACAAG-TTCGGATTCTCACATATATCAC
*
37375098 GAACTTGGACCACTCAACAAGTTCGGATTCTCACATATATCAC
1 GAACTCGGACCACTCAACAAGTTCGGATTCTCACATATATCAC
37375141 GAACTC
1 GAACTC
37375147 AGACAGCTTA
Statistics
Matches: 74, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
41 2 0.03
42 31 0.42
43 40 0.54
44 1 0.01
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (43 bp):
GAACTCGGACCACTCAACAAGTTCGGATTCTCACATATATCAC
Found at i:37375167 original size:43 final size:43
Alignment explanation
Indices: 37375013--37375169 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 43
37375003 CATCCATTAT
* ** * ** * *
37375013 GAACTCGGACCACTCAATGAGCTCGGATGCTCACATCCATAAT
1 GAACTCAGACCACTCAACAAGCTCGGATTCTCACATATATCAC
* ** *
37375056 GAACTCGGACCACTCAACAAGCTTAGA-TGTCACATATATCAC
1 GAACTCAGACCACTCAACAAGCTCGGATTCTCACATATATCAC
** *
37375098 GAACTTGGACCACTCAACAAGTTCGGATTCTCACATATATCAC
1 GAACTCAGACCACTCAACAAGCTCGGATTCTCACATATATCAC
* *
37375141 GAACTCAGA-CAGCTTAACGAGCTCGGATT
1 GAACTCAGACCA-CTCAACAAGCTCGGATT
37375170 TCTTAATTCC
Statistics
Matches: 92, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
42 34 0.37
43 58 0.63
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.22
Consensus pattern (43 bp):
GAACTCAGACCACTCAACAAGCTCGGATTCTCACATATATCAC
Found at i:37375685 original size:30 final size:30
Alignment explanation
Indices: 37375641--37375697 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
37375631 CAAAAATCAT
*
37375641 ACTTTTACAAATTTGCA-TTTTGACCCCTAA
1 ACTTTCACAAATTTGCACTTTTG-CCCCTAA
*
37375671 ACTTTCACATATTTGCACTTTTGCCCC
1 ACTTTCACAAATTTGCACTTTTGCCCC
37375698 AATGCTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.25, C:0.28, G:0.07, T:0.40
Consensus pattern (30 bp):
ACTTTCACAAATTTGCACTTTTGCCCCTAA
Found at i:37378074 original size:46 final size:48
Alignment explanation
Indices: 37378020--37378150 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 48
37378010 ATATTTGGGC
*
37378020 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
* * * *
37378067 -TCCGAACTCGTTGAGTTGAGTACGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC-AGG
*
37378112 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37378151 GCGGGTTACA
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
43 6 0.09
45 4 0.06
46 28 0.41
47 27 0.40
48 2 0.03
50 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
Found at i:37381090 original size:15 final size:15
Alignment explanation
Indices: 37381070--37381138 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
37381060 GTATCTTGGG
37381070 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
37381085 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
37381100 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
37381115 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
37381130 TTTCTTTAT
1 TTTCTTTAT
37381139 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:37381139 original size:30 final size:30
Alignment explanation
Indices: 37381061--37381148 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
37381051 CATAGTATCG
* * * *
37381061 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
37381091 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
37381121 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
37381149 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:37383584 original size:46 final size:46
Alignment explanation
Indices: 37383531--37383706 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
37383521 TATTTGGGCA
37383531 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37383577 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
37383622 CATCCGAGCTCGTTGAGTTTAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
37383670 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37383707 GTGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37383686 original size:93 final size:93
Alignment explanation
Indices: 37383527--37383698 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
37383517 GGGATATTTG
* * *
37383527 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
37383592 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
37383620 GGCATCCGAGCTCGTTGAGTTTAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
37383685 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
37383699 ACTTATGGGT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:37385845 original size:20 final size:20
Alignment explanation
Indices: 37385807--37385845 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
37385797 ATATCAAGTT
37385807 TATAACATGTACTTCCATACA
1 TATAACATGTAC-TCCATACA
37385828 TATAACATGATA-TCCATA
1 TATAACATG-TACTCCATA
37385846 AACACAATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 9 0.53
22 2 0.12
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (20 bp):
TATAACATGTACTCCATACA
Found at i:37385888 original size:21 final size:24
Alignment explanation
Indices: 37385854--37385905 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 24
37385844 TAAACACAAT
37385854 CAAATGATCACTTCAAAAGT-TAC
1 CAAATGATCACTTCAAAAGTATAC
*
37385877 CAAAT-AT-ACTTCTAAAGTATAC
1 CAAATGATCACTTCAAAAGTATAC
37385899 CTAAATG
1 C-AAATG
37385906 GTTAACCTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 10 0.40
22 6 0.24
23 9 0.36
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (24 bp):
CAAATGATCACTTCAAAAGTATAC
Found at i:37396563 original size:23 final size:23
Alignment explanation
Indices: 37396537--37396583 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
37396527 AATTAAGTAC
*
37396537 AACTCTTATTGTACTCAACTCAA
1 AACTCTTATTGTACACAACTCAA
*
37396560 AACTCTTATTGTACACGACTCAA
1 AACTCTTATTGTACACAACTCAA
37396583 A
1 A
37396584 GTTACCGGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.32
Consensus pattern (23 bp):
AACTCTTATTGTACACAACTCAA
Found at i:37396690 original size:41 final size:41
Alignment explanation
Indices: 37396592--37396817 Score: 242
Period size: 41 Copynumber: 5.6 Consensus size: 41
37396582 AAGTTACCGG
* * * *
37396592 AGTATAAACAGGGGCACATATGTGT-ATTACAGGGGTACTGA
1 AGTATAAATAGGGGCACGTATGTGTAATT-CAAGGGTACTAA
* **
37396633 AGTATAAAAATAGGCACGTATGTGTAATTCAAGGGTACTAA
1 AGTATAAATAGGGGCACGTATGTGTAATTCAAGGGTACTAA
* *
37396674 AGTATAATTAGGGGCACGTATGTGTAATTC-AGGGTACCAA
1 AGTATAAATAGGGGCACGTATGTGTAATTCAAGGGTACTAA
* * * * *
37396714 AGTACAAATAGGGGCGCATATGTGCAATTCAAGGGTATTAA
1 AGTATAAATAGGGGCACGTATGTGTAATTCAAGGGTACTAA
* * * *
37396755 AGTACAAACAGGGGCACGTATGTGCAATTC-AGGGTACCAA
1 AGTATAAATAGGGGCACGTATGTGTAATTCAAGGGTACTAA
* *
37396795 AGTATATATAGGGGCAAGTATGT
1 AGTATAAATAGGGGCACGTATGT
37396818 ACAATTCAGG
Statistics
Matches: 156, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
40 61 0.39
41 92 0.59
42 3 0.02
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.25
Consensus pattern (41 bp):
AGTATAAATAGGGGCACGTATGTGTAATTCAAGGGTACTAA
Found at i:37396817 original size:81 final size:80
Alignment explanation
Indices: 37396592--37396825 Score: 263
Period size: 81 Copynumber: 2.9 Consensus size: 80
37396582 AAGTTACCGG
* * ** * ** *
37396592 AGTATAAACAGGGGCACATATGTGTATTACAGGGGTACTGAAGTATAAAAATAGGCACGTATGTG
1 AGTATAAACAGGGGCACGTATGTGAATT-CA-GGGTACCAAAGTATAAATAGGGGCAAGTATGTG
*
37396657 TAATTCAAGGGTACTAA
64 CAATTCAAGGGTACTAA
** * *
37396674 AGTATAATTAGGGGCACGTATGTGTAATTCAGGGTACCAAAGTACAAATAGGGGCGCA-TATGTG
1 AGTATAAACAGGGGCACGTATGTG-AATTCAGGGTACCAAAGTATAAATAGGGGC-AAGTATGTG
*
37396738 CAATTCAAGGGTATTAA
64 CAATTCAAGGGTACTAA
* * *
37396755 AGTACAAACAGGGGCACGTATGTGCAATTCAGGGTACCAAAGTATATATAGGGGCAAGTATGTAC
1 AGTATAAACAGGGGCACGTATGTG-AATTCAGGGTACCAAAGTATAAATAGGGGCAAGTATGTGC
37396820 AATTCA
65 AATTCA
37396826 GGAAATAATT
Statistics
Matches: 127, Mismatches: 22, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
80 1 0.01
81 100 0.79
82 23 0.18
83 3 0.02
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.25
Consensus pattern (80 bp):
AGTATAAACAGGGGCACGTATGTGAATTCAGGGTACCAAAGTATAAATAGGGGCAAGTATGTGCA
ATTCAAGGGTACTAA
Found at i:37397745 original size:50 final size:51
Alignment explanation
Indices: 37397650--37397754 Score: 167
Period size: 50 Copynumber: 2.1 Consensus size: 51
37397640 GTGAAGTTAC
* *
37397650 TGCTGATGAATATGCTGGTGATTTTACAACATCAGATGGAGTGGATAATGT
1 TGCTGATGAATATGCTAGTGATTTTACAACATCAAATGGAGTGGATAATGT
* *
37397701 TGCTGATGAATATGCTAGTG-TTTTTCAACATCAAATGGATTGGATAATGT
1 TGCTGATGAATATGCTAGTGATTTTACAACATCAAATGGAGTGGATAATGT
37397751 TGCT
1 TGCT
37397755 ACTGCAAGTA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
50 31 0.62
51 19 0.38
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.36
Consensus pattern (51 bp):
TGCTGATGAATATGCTAGTGATTTTACAACATCAAATGGAGTGGATAATGT
Found at i:37403879 original size:78 final size:78
Alignment explanation
Indices: 37403785--37403944 Score: 284
Period size: 78 Copynumber: 2.1 Consensus size: 78
37403775 CAATTTAGTC
*
37403785 CATAACTTCATTCTTCTTGATCTAACATGTCAAATATAACTTATTTAACACTCACATTATTCAAA
1 CATAACCTCATTCTTCTTGATCTAACATGTCAAATATAACTTATTTAACACTCACATTATTCAAA
37403850 TTGGTCCAAAAAT
66 TTGGTCCAAAAAT
*
37403863 CATAACCTCATTCTTCTTGATCTAACATTTCAAATATAACTTATTTAACACTCACATTATTCAAA
1 CATAACCTCATTCTTCTTGATCTAACATGTCAAATATAACTTATTTAACACTCACATTATTCAAA
* *
37403928 TTGGTCTAATAAT
66 TTGGTCCAAAAAT
37403941 CATA
1 CATA
37403945 CTTTGGAAAA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 78 1.00
ACGTcount: A:0.37, C:0.21, G:0.04, T:0.38
Consensus pattern (78 bp):
CATAACCTCATTCTTCTTGATCTAACATGTCAAATATAACTTATTTAACACTCACATTATTCAAA
TTGGTCCAAAAAT
Found at i:37409182 original size:22 final size:21
Alignment explanation
Indices: 37409157--37409214 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
37409147 CACTTTTATG
37409157 TTATTTTAGTTTTATTTATTTA
1 TTATTTTAGTTTTA-TTATTTA
* *
37409179 TTA-TTTATTATTTATTATTTT
1 TTATTTTAGT-TTTATTATTTA
37409200 TCTATTTTAGTTTTA
1 T-TATTTTAGTTTTA
37409215 GAGGACATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 12 0.40
22 13 0.43
23 5 0.17
ACGTcount: A:0.22, C:0.02, G:0.03, T:0.72
Consensus pattern (21 bp):
TTATTTTAGTTTTATTATTTA
Found at i:37409184 original size:7 final size:7
Alignment explanation
Indices: 37409167--37409198 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
37409157 TTATTTTAGT
37409167 TTTATTTA
1 TTTA-TTA
37409175 TTTATTA
1 TTTATTA
37409182 TTTATTA
1 TTTATTA
37409189 TTTATTA
1 TTTATTA
37409196 TTT
1 TTT
37409199 TTCTATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTATTA
Found at i:37410751 original size:11 final size:11
Alignment explanation
Indices: 37410715--37410744 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
37410705 TATTTTATTT
37410715 TTTTATTTTTG
1 TTTTATTTTTG
37410726 TTTTATTTTTG
1 TTTTATTTTTG
37410737 TTTTATTT
1 TTTTATTT
37410745 ATTTTTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.10, C:0.00, G:0.07, T:0.83
Consensus pattern (11 bp):
TTTTATTTTTG
Found at i:37411768 original size:20 final size:20
Alignment explanation
Indices: 37411743--37411782 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37411733 TATTAAAAAA
*
37411743 AAGAAATCGCATATTTATAT
1 AAGAAAGCGCATATTTATAT
*
37411763 AAGAAAGCGTATATTTATAT
1 AAGAAAGCGCATATTTATAT
37411783 TCATATAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.35
Consensus pattern (20 bp):
AAGAAAGCGCATATTTATAT
Found at i:37415146 original size:23 final size:23
Alignment explanation
Indices: 37415119--37415190 Score: 117
Period size: 23 Copynumber: 3.1 Consensus size: 23
37415109 TGGAAAGATT
*
37415119 AGGGATTTCATGATTTGGTTCTA
1 AGGGATTTCACGATTTGGTTCTA
*
37415142 AGGGATTTCACAATTTGGTTCTA
1 AGGGATTTCACGATTTGGTTCTA
*
37415165 AGGGATTTCACGATTTGGTTGTA
1 AGGGATTTCACGATTTGGTTCTA
37415188 AGG
1 AGG
37415191 ATTAAGGATG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 45 1.00
ACGTcount: A:0.24, C:0.10, G:0.28, T:0.39
Consensus pattern (23 bp):
AGGGATTTCACGATTTGGTTCTA
Found at i:37416791 original size:43 final size:43
Alignment explanation
Indices: 37416733--37416816 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
37416723 GATATATGTG
* * *
37416733 GCATTCGAGCTCGTTGAGTGGTCCGGGTTCATTATGGATGCGA
1 GCATTCAAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGA
*
37416776 GCATTCAAGCTCGTTGAGTGGTCTGAGTTCATAATGGATGC
1 GCATTCAAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGC
37416817 TATACTGGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.19, C:0.18, G:0.32, T:0.31
Consensus pattern (43 bp):
GCATTCAAGCTCGTTGAGTGGTCCGAGTTCATAATGGATGCGA
Found at i:37419779 original size:17 final size:16
Alignment explanation
Indices: 37419745--37419803 Score: 66
Period size: 16 Copynumber: 3.6 Consensus size: 16
37419735 AGATGTTATG
37419745 GATTTGGGGATTTCAC
1 GATTTGGGGATTTCAC
*
37419761 GATTTGGGGAATTTGAC
1 GATTTGGGG-ATTTCAC
* *
37419778 GAGTTGGGGATTTTA-
1 GATTTGGGGATTTCAC
37419793 GAATTTGGGGA
1 G-ATTTGGGGA
37419804 AAAAAGTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
15 1 0.03
16 22 0.59
17 14 0.38
ACGTcount: A:0.22, C:0.05, G:0.37, T:0.36
Consensus pattern (16 bp):
GATTTGGGGATTTCAC
Found at i:37422899 original size:64 final size:64
Alignment explanation
Indices: 37422798--37422927 Score: 199
Period size: 64 Copynumber: 2.0 Consensus size: 64
37422788 CAGTTCATAA
* * *
37422798 ATGCATCGAAAGTAGGGGCTGAATCAGTTAAATGCAAACTGCCCATTTAT-TAAATCAAAACGCC
1 ATGCATCAAAAGTAGGGACTAAATCAGTTAAATGCAAACTGCCCATTTATGT-AATCAAAACGCC
* *
37422862 ATGCATCAAAAGTAGTGACTAAATCAGTTAAATGCAAACTGCCCATTTATGTAATCAAAATGCC
1 ATGCATCAAAAGTAGGGACTAAATCAGTTAAATGCAAACTGCCCATTTATGTAATCAAAACGCC
37422926 AT
1 AT
37422928 AAAGAATCAA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
64 59 0.98
65 1 0.02
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.25
Consensus pattern (64 bp):
ATGCATCAAAAGTAGGGACTAAATCAGTTAAATGCAAACTGCCCATTTATGTAATCAAAACGCC
Found at i:37430092 original size:27 final size:27
Alignment explanation
Indices: 37430052--37430197 Score: 175
Period size: 27 Copynumber: 5.4 Consensus size: 27
37430042 TGGATAAGTT
*
37430052 GTAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* *
37430079 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
37430106 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCTTGTAGG
* ** * *
37430133 GTAGAAATATTGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCTTGTAGG
* * *
37430160 GTAGAATTATCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCTTGTAGG
*
37430187 GTAAAATTACC
1 GTAGAATTACC
37430198 ATTTTGCCCC
Statistics
Matches: 99, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCTTGTAGG
Found at i:37430135 original size:54 final size:54
Alignment explanation
Indices: 37430052--37430197 Score: 204
Period size: 54 Copynumber: 2.7 Consensus size: 54
37430042 TGGATAAGTT
37430052 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTAT-AG
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAAG
* * ** *
37430105 GATAGAATTACCGAAATACCCTTGTAGGGTAGAAATATTGAAATACCCCTGTAAG
1 G-TAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAAG
* * *
37430160 GTAGAATTATCGAGATACCCTTGTGGGGTAAAATTACC
1 GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACC
37430198 ATTTTGCCCC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 75 0.95
55 3 0.04
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.27
Consensus pattern (54 bp):
GTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTATAAG
Found at i:37432394 original size:10 final size:10
Alignment explanation
Indices: 37432379--37432416 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
37432369 TTTCTCACTC
37432379 TTTTCTTTCT
1 TTTTCTTTCT
37432389 TTTTCTTGTCT
1 TTTTCTT-TCT
37432400 TTTT-TTTCT
1 TTTTCTTTCT
37432409 TTTTCTTT
1 TTTTCTTT
37432417 TTCTACAGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 7 0.27
10 12 0.46
11 7 0.27
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.82
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:37432395 original size:15 final size:14
Alignment explanation
Indices: 37432377--37432418 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
37432367 CTTTTCTCAC
37432377 TCTTTTCTTTCTTTT
1 TCTTTTCTTT-TTTT
*
37432392 TCTTGTCTTTTTTT
1 TCTTTTCTTTTTTT
37432406 TCTTTTTCTTTTT
1 TC-TTTTCTTTTT
37432419 CTACAGACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 6 0.25
15 18 0.75
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (14 bp):
TCTTTTCTTTTTTT
Found at i:37432400 original size:20 final size:20
Alignment explanation
Indices: 37432377--37432415 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
37432367 CTTTTCTCAC
37432377 TCTTTTCTTTCTTTTTCTTG
1 TCTTTTCTTTCTTTTTCTTG
*
37432397 TCTTTTTTTTCTTTTTCTT
1 TCTTTTCTTTCTTTTTCTT
37432416 TTTCTACAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (20 bp):
TCTTTTCTTTCTTTTTCTTG
Found at i:37436255 original size:20 final size:20
Alignment explanation
Indices: 37436232--37436277 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
37436222 GTGGATTAGG
37436232 CCGTGTGGCTTGGGATATGC
1 CCGTGTGGCTTGGGATATGC
37436252 CCGTGTGGCTTGGGATATGC
1 CCGTGTGGCTTGGGATATGC
37436272 CCGTGT
1 CCGTGT
37436278 CCTCAGCCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.09, C:0.22, G:0.39, T:0.30
Consensus pattern (20 bp):
CCGTGTGGCTTGGGATATGC
Found at i:37442208 original size:6 final size:6
Alignment explanation
Indices: 37442197--37442374 Score: 123
Period size: 6 Copynumber: 28.8 Consensus size: 6
37442187 TATCATAACT
* * *
37442197 AGAATC AGAATC AGAATC AGAATC AGAATC AG-GTGAC AGAATC AAAATT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * * *
37442246 AGAACC AGAATC AGAATT AGGTAA-C ATAATC AGAATC AGTATC AGGTAA-C
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC
* * *
37442296 AGAATC AGAATC AGAACC AGAATC AGAATT AGGTAAT- AGAATC AGAATA
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* *
37442345 AGTATC AGGTAA-C AGAATT AGAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
37442375 GTGAATGCAA
Statistics
Matches: 134, Mismatches: 23, Indels: 30
0.72 0.12 0.16
Matches are distributed among these distances:
5 10 0.07
6 103 0.77
7 13 0.10
8 8 0.06
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:37442239 original size:37 final size:37
Alignment explanation
Indices: 37442192--37442324 Score: 137
Period size: 37 Copynumber: 3.6 Consensus size: 37
37442182 AACATTATCA
37442192 TAACTAGAATCAGAATCAGAATCAGAATCAGAATCAGG
1 TAAC-AGAATCAGAATCAGAATCAGAATCAGAATCAGG
* * * * *
37442230 TGACAGAATCAAAATTAGAACCAGAATCAGAATTAGG
1 TAACAGAATCAGAATCAGAATCAGAATCAGAATCAGG
* *
37442267 TAACATAATCAGAATCAGTATCAGGTAA-CAGAATCA-G
1 TAACAGAATCAGAATCAGAATCA-G-AATCAGAATCAGG
*
37442304 -AATCAGAACCAGAATCAGAAT
1 TAA-CAGAATCAGAATCAGAAT
37442325 TAGGTAATAG
Statistics
Matches: 77, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
36 2 0.03
37 62 0.81
38 11 0.14
39 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (37 bp):
TAACAGAATCAGAATCAGAATCAGAATCAGAATCAGG
Found at i:37442240 original size:31 final size:31
Alignment explanation
Indices: 37442202--37442374 Score: 142
Period size: 31 Copynumber: 5.6 Consensus size: 31
37442192 TAACTAGAAT
*
37442202 CAGAATCAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
* * *
37442233 CAGAATCAAAATTAGAACCAGAATCA-G-AA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
* * *
37442262 TTAGGTAA-CATAATCAGAATCAGTATCAGGTAA
1 -CA-G-AATCAGAATCAGAATCAGAATCAGGTAA
*
37442295 CAGAATCAGAATCAGAACCAGAATCA-G-AA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
* * *
37442324 TTAGGTAAT-AGAATCAGAATAAGTATCAGGTAA
1 -CA-G-AATCAGAATCAGAATCAGAATCAGGTAA
*
37442357 CAGAATTAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
37442375 GTGAATGCAA
Statistics
Matches: 112, Mismatches: 18, Indels: 24
0.73 0.12 0.16
Matches are distributed among these distances:
29 3 0.03
30 9 0.08
31 87 0.78
32 9 0.08
33 4 0.04
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:37442281 original size:25 final size:25
Alignment explanation
Indices: 37442192--37442311 Score: 97
Period size: 25 Copynumber: 4.8 Consensus size: 25
37442182 AACATTATCA
37442192 TAACTAGAATCAGAATCAGAATCA-G
1 TAAC-AGAATCAGAATCAGAATCAGG
*
37442217 -AATCAGAATCAG-GTGACAGAATCA--
1 TAA-CAGAATCAGAAT--CAGAATCAGG
* * * *
37442241 AAATTAGAACCAGAATCAGAATTAGG
1 TAA-CAGAATCAGAATCAGAATCAGG
* *
37442267 TAACATAATCAGAATCAGTATCAGG
1 TAACAGAATCAGAATCAGAATCAGG
37442292 TAACAGAATCAGAATCAGAA
1 TAACAGAATCAGAATCAGAA
37442312 CCAGAATCAG
Statistics
Matches: 75, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
23 1 0.01
24 17 0.23
25 54 0.72
26 3 0.04
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.19
Consensus pattern (25 bp):
TAACAGAATCAGAATCAGAATCAGG
Found at i:37442284 original size:62 final size:62
Alignment explanation
Indices: 37442208--37442373 Score: 251
Period size: 62 Copynumber: 2.7 Consensus size: 62
37442198 GAATCAGAAT
* * *
37442208 CAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATTAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
* *
37442270 CATAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
* * * *
37442332 TAGAATCAGAATAAGTATCAGGTAACAGAATTAGAATCAGAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAA
37442374 TGTGAATGCA
Statistics
Matches: 95, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 95 1.00
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAAAATCAGAACCAGAATCAGAATTAGGTAA
Found at i:37442341 original size:25 final size:25
Alignment explanation
Indices: 37442208--37442374 Score: 98
Period size: 25 Copynumber: 6.7 Consensus size: 25
37442198 GAATCAGAAT
*
37442208 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* * *
37442233 CAGAATCAAAATTAGAACCA-G-AA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
37442256 TCAGAATTAGGTAA-CATAATCA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
*
37442281 TCAGTATCAGGTAA-CAGAATCA-G-AA
1 -CAGAATCA-G-AATCAGAATCAGGTAA
* *
37442306 TCAGAACCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGAATCAGGTAA
* * *
37442332 TAGAATCAGAATAAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
37442357 CAGAATTAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
37442375 GTGAATGCAA
Statistics
Matches: 112, Mismatches: 24, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
23 3 0.03
24 16 0.14
25 89 0.79
26 4 0.04
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:37442535 original size:27 final size:26
Alignment explanation
Indices: 37442493--37442544 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
37442483 GCGAGGTTGC
*
37442493 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
37442519 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
37442545 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:37442585 original size:67 final size:67
Alignment explanation
Indices: 37442477--37442630 Score: 272
Period size: 67 Copynumber: 2.3 Consensus size: 67
37442467 CACCACAGAA
* *
37442477 ATTGCAGCGAGGTTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAACTCACCAGAACAGATATATGTGGCGAAGCCACC
37442542 AG
66 AG
*
37442544 ATTGCAGCGAGGCTGCCAGATATTGTGACGAACTCACCAGAACAGATATATGTGGCGAAGCCACT
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAACTCACCAGAACAGATATATGTGGCGAAGCCACC
37442609 AG
66 AG
*
37442611 ATTGCAGTGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
37442631 ACGCTTCCTC
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 83 1.00
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (67 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAACTCACCAGAACAGATATATGTGGCGAAGCCACC
AG
Found at i:37442913 original size:27 final size:27
Alignment explanation
Indices: 37442874--37442960 Score: 120
Period size: 27 Copynumber: 3.2 Consensus size: 27
37442864 TACCCCACAA
* * * *
37442874 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTATAGG
*
37442901 GGTATTTTAGTAATTCTACCCTATAGG
1 GGTATTTCAGTAATTCTACCCTATAGG
*
37442928 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCAGTAATTCTACCCTATAGG
37442955 GGTATT
1 GGTATT
37442961 GCGATGTTGT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.36
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCCTATAGG
Found at i:37448058 original size:30 final size:30
Alignment explanation
Indices: 37448024--37448126 Score: 93
Period size: 30 Copynumber: 3.5 Consensus size: 30
37448014 AGCTCACTCC
37448024 TAGCTCATATTTAGCTCACGAGCTAAACCT
1 TAGCTCATATTTAGCTCACGAGCTAAACCT
** * * * * * *
37448054 TAGCTCAGCTTCAGCTTAGGAGTTTAATCT
1 TAGCTCATATTTAGCTCACGAGCTAAACCT
* *
37448084 CAGCTCA-ACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
37448114 TAGCTCAT-TTTAG
1 TAGCTCATATTTAG
37448127 TTTAACTCGG
Statistics
Matches: 54, Mismatches: 17, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
29 5 0.09
30 49 0.91
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (30 bp):
TAGCTCATATTTAGCTCACGAGCTAAACCT
Found at i:37451294 original size:45 final size:49
Alignment explanation
Indices: 37451188--37451300 Score: 137
Period size: 50 Copynumber: 2.4 Consensus size: 49
37451178 AATCGAGGCT
* *
37451188 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCACATATCCGTGCC
1 GATGCCATGTCCCAGACAGGGTATTACACTAGC-ATCACATATCCGTGCC
* *
37451238 AATGCCATGTCCCAGACAGGGTATTACACT-G-A-CACATCT-CGTAGCC
1 GATGCCATGTCCCAGACAGGGTATTACACTAGCATCACATATCCGT-GCC
37451284 GATG-CATGTCCCAGACA
1 GATGCCATGTCCCAGACA
37451301 TGTCTTACAC
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
45 16 0.28
46 12 0.21
47 1 0.02
49 1 0.02
50 27 0.47
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGGTATTACACTAGCATCACATATCCGTGCC
Found at i:37453742 original size:29 final size:29
Alignment explanation
Indices: 37453709--37453768 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
37453699 ATAACCAAAC
* *
37453709 CTACAAAAACTTTATATCCATAAATCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
37453738 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
37453767 CT
1 CT
37453769 TTGAATCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:37453761 original size:15 final size:15
Alignment explanation
Indices: 37453715--37453762 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
37453705 AAACCTACAA
*
37453715 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
37453730 AAA-TCCATCTACAT
1 AAACTTCATATCCAT
37453744 AAACTTCATATCCAT
1 AAACTTCATATCCAT
37453759 AAAC
1 AAAC
37453763 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:37455467 original size:12 final size:13
Alignment explanation
Indices: 37455436--37455469 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
37455426 TAGATACTGA
37455436 AATTTTTTATACG
1 AATTTTTTATACG
*
37455449 AATTTTTTATGCG
1 AATTTTTTATACG
37455462 AATTTTTT
1 AATTTTTT
37455470 TGATCAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.06, G:0.09, T:0.59
Consensus pattern (13 bp):
AATTTTTTATACG
Found at i:37458425 original size:18 final size:19
Alignment explanation
Indices: 37458383--37458431 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
37458373 AACTATGTCG
37458383 TACATGAATCTTTTAAGTA
1 TACATGAATCTTTTAAGTA
37458402 TA-ATGAATTCTTTTAA-T-
1 TACATGAA-TCTTTTAAGTA
*
37458419 TACATGAACCTTT
1 TACATGAATCTTT
37458432 ATTTGATGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 6 0.22
18 11 0.41
19 10 0.37
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (19 bp):
TACATGAATCTTTTAAGTA
Found at i:37474884 original size:39 final size:40
Alignment explanation
Indices: 37474839--37475063 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
37474829 GCTCCTCGTT
* * * *
37474839 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
37474879 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
37474918 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
37474958 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
37474998 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
37475039 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37475064 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.24
40 105 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37475072 original size:41 final size:41
Alignment explanation
Indices: 37474995--37475072 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
37474985 CTTGTATCTC
* * *
37474995 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
37475036 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
37475073 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:37476784 original size:12 final size:12
Alignment explanation
Indices: 37476763--37476792 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
37476753 CCGAGCACCT
37476763 CCACGACCTCTA
1 CCACGACCTCTA
*
37476775 CCACGGCCTCTA
1 CCACGACCTCTA
37476787 CCACGA
1 CCACGA
37476793 GTAACTCTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.23, C:0.50, G:0.13, T:0.13
Consensus pattern (12 bp):
CCACGACCTCTA
Found at i:37480593 original size:5 final size:5
Alignment explanation
Indices: 37480583--37480609 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
37480573 TTAATTAATG
37480583 AAAGA AAAGA AAAGA AAAGA AAAGA AA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AA
37480610 CATAAGCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAGA
Done.