Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 118 of 325
Found at i:38057209 original size:21 final size:21
Alignment explanation
Indices: 38057159--38057209 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
38057149 AAAGTGAGAG
*
38057159 AAAAAGAAAATGAAGAAAAGA
1 AAAAAGAAAAAGAAGAAAAGA
** *
38057180 AAATTGAAAAAGAA-AAAGCGA
1 AAAAAGAAAAAGAAGAAA-AGA
38057201 AAAAAGAAA
1 AAAAAGAAA
38057210 TTGAAAGAGA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
20 3 0.13
21 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.06
Consensus pattern (21 bp):
AAAAAGAAAAAGAAGAAAAGA
Found at i:38057249 original size:33 final size:33
Alignment explanation
Indices: 38057212--38057274 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
38057202 AAAAGAAATT
38057212 GAAAGAGAG-CT-TGAAAAGAAATCAAGTGAAAAA
1 GAAAGAGAGTCTAT-AAAAGAAA-CAAGTGAAAAA
*
38057245 GAAAGAGAGTCTATAAAAGAAACGAGTGAA
1 GAAAGAGAGTCTATAAAAGAAACAAGTGAA
38057275 GTGAGTAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.56, C:0.06, G:0.25, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTCTATAAAAGAAACAAGTGAAAAA
Found at i:38059038 original size:10 final size:10
Alignment explanation
Indices: 38059023--38059087 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
38059013 AGTTTTTCCC
38059023 AGCTCAATTT
1 AGCTCAATTT
*
38059033 AGCTCACA-TG
1 AGCTCA-ATTT
*
38059043 AGCTTAATTT
1 AGCTCAATTT
*
38059053 AGCTC-GTTT
1 AGCTCAATTT
38059062 GAGCTCAATTT
1 -AGCTCAATTT
* *
38059073 AGCTTACTTT
1 AGCTCAATTT
38059083 AGCTC
1 AGCTC
38059088 GTTTGAGCTT
Statistics
Matches: 42, Mismatches: 9, Indels: 8
0.71 0.15 0.14
Matches are distributed among these distances:
9 4 0.10
10 34 0.81
11 4 0.10
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (10 bp):
AGCTCAATTT
Found at i:38059046 original size:20 final size:20
Alignment explanation
Indices: 38059023--38059076 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
38059013 AGTTTTTCCC
38059023 AGCTCAATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
38059043 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
38059063 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
38059077 TACTTTAGCT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:38059057 original size:30 final size:30
Alignment explanation
Indices: 38059023--38059096 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
38059013 AGTTTTTCCC
38059023 AGCTCAATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTC-ATTTGAGCTCA-ATTGAGCTTAATTT
* * *
38059053 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCATTTGAGCTCAATTGAGCTTAATTT
*
38059083 AGCTCGTTTGAGCT
1 AGCTCATTTGAGCT
38059097 TGGCTTAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
29 4 0.10
30 35 0.90
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (30 bp):
AGCTCATTTGAGCTCAATTGAGCTTAATTT
Found at i:38059086 original size:20 final size:20
Alignment explanation
Indices: 38059023--38059087 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
38059013 AGTTTTTCCC
* * *
38059023 AGCTCAATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
38059043 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
38059062 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
38059083 AGCTC
1 AGCTC
38059088 GTTTGAGCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 29 0.81
21 4 0.11
22 1 0.03
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:38059764 original size:20 final size:20
Alignment explanation
Indices: 38059718--38059764 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
38059708 AGCTCGTTTC
*
38059718 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
38059738 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
38059758 CAGCTCA
1 CAGCTCA
38059765 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:38061309 original size:27 final size:25
Alignment explanation
Indices: 38061279--38061338 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 25
38061269 AAAAAAATTC
**
38061279 AAAAAAAAGTGAAAAAAA-TCGAGCA
1 AAAAAAAAAAGAAAAAAAGT-GAGCA
38061304 AAAAAAAGAAAGAAAAAAAGGTGAGCA
1 AAAAAAA-AAAGAAAAAAA-GTGAGCA
38061331 AAAAAAAA
1 AAAAAAAA
38061339 TCAAGTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
25 7 0.23
26 10 0.33
27 12 0.40
28 1 0.03
ACGTcount: A:0.73, C:0.05, G:0.17, T:0.05
Consensus pattern (25 bp):
AAAAAAAAAAGAAAAAAAGTGAGCA
Found at i:38062323 original size:13 final size:12
Alignment explanation
Indices: 38062298--38062406 Score: 50
Period size: 11 Copynumber: 9.0 Consensus size: 12
38062288 GAACAATTGC
38062298 AAGAAAA-AAAA
1 AAGAAAAGAAAA
38062309 AAGAAAACGAAAA
1 AAGAAAA-GAAAA
*
38062322 AATAAAAG-AAA
1 AAGAAAAGAAAA
**
38062333 TTGCAAAAG-AAA
1 AAG-AAAAGAAAA
*
38062345 AAGAAATCGAAAA
1 AAGAAA-AGAAAA
* * *
38062358 ATG-AGAGAGAA
1 AAGAAAAGAAAA
38062369 AAGAAAATGAAGAA
1 AAGAAAA-GAA-AA
38062383 AAGAAAATTG-AAA
1 AAGAAAA--GAAAA
38062396 AAG-AAAGAAAA
1 AAGAAAAGAAAA
38062407 GACAATGAGT
Statistics
Matches: 74, Mismatches: 14, Indels: 20
0.69 0.13 0.19
Matches are distributed among these distances:
10 1 0.01
11 22 0.30
12 17 0.23
13 22 0.30
14 10 0.14
15 2 0.03
ACGTcount: A:0.72, C:0.03, G:0.17, T:0.07
Consensus pattern (12 bp):
AAGAAAAGAAAA
Found at i:38062345 original size:5 final size:6
Alignment explanation
Indices: 38062298--38062401 Score: 52
Period size: 6 Copynumber: 17.0 Consensus size: 6
38062288 GAACAATTGC
* ** *
38062298 AAGAAA AA-AAA AAGAAA ACGAAA AA-ATAA AAGAAA TTGCAA AAGAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGA-AA AAGAAA AAGAAA AAGAAA
** * * * *
38062345 AAGAAA TCGAAA AATGAGA GAG-AA AAGAAA ATGAAGAA AAGAAA ATTGAAA
1 AAGAAA AAGAAA AA-GAAA AAGAAA AAGAAA AAG-A-AA AAGAAA A-AGAAA
38062396 AAGAAA
1 AAGAAA
38062402 GAAAAGACAA
Statistics
Matches: 70, Mismatches: 20, Indels: 16
0.66 0.19 0.15
Matches are distributed among these distances:
5 9 0.13
6 45 0.64
7 12 0.17
8 4 0.06
ACGTcount: A:0.72, C:0.03, G:0.17, T:0.08
Consensus pattern (6 bp):
AAGAAA
Found at i:38062358 original size:18 final size:17
Alignment explanation
Indices: 38062300--38062358 Score: 73
Period size: 18 Copynumber: 3.4 Consensus size: 17
38062290 ACAATTGCAA
*
38062300 GAAAAAAAAAAGAAAAC
1 GAAAAAAAAAAGAAATC
*
38062317 GAAAAAATAAAAGAAATT
1 GAAAAAA-AAAAGAAATC
*
38062335 GCAAAAGAAAAAGAAATC
1 G-AAAAAAAAAAGAAATC
38062353 GAAAAA
1 GAAAAA
38062359 TGAGAGAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 11 0.31
18 19 0.54
19 5 0.14
ACGTcount: A:0.75, C:0.05, G:0.14, T:0.07
Consensus pattern (17 bp):
GAAAAAAAAAAGAAATC
Found at i:38062414 original size:36 final size:38
Alignment explanation
Indices: 38062343--38062414 Score: 96
Period size: 36 Copynumber: 1.9 Consensus size: 38
38062333 TTGCAAAAGA
38062343 AAAAGAAATCGAAAAATGAGAGAGAAAAGAAAATGAAG
1 AAAAGAAATCGAAAAATGAGAGAGAAAAGAAAATGAAG
* *
38062381 AAAAGAAAATTGAAAAA-GA-A-AGAAAAGACAATGA
1 AAAAG-AAATCGAAAAATGAGAGAGAAAAGAAAATGA
38062415 GTTAGAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 13 0.42
37 1 0.03
38 7 0.23
39 10 0.32
ACGTcount: A:0.68, C:0.03, G:0.21, T:0.08
Consensus pattern (38 bp):
AAAAGAAATCGAAAAATGAGAGAGAAAAGAAAATGAAG
Found at i:38064114 original size:20 final size:20
Alignment explanation
Indices: 38064068--38064114 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
38064058 AGCTCGTTTC
*
38064068 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
38064088 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
38064108 CAGCTCA
1 CAGCTCA
38064115 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:38065512 original size:14 final size:16
Alignment explanation
Indices: 38065493--38065524 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
38065483 GCTGTTTTCA
38065493 TTTTCTTT-CTT-TAC
1 TTTTCTTTGCTTATAC
38065507 TTTTCTTTGCTTATAC
1 TTTTCTTTGCTTATAC
38065523 TT
1 TT
38065525 GTGCCGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 3 0.19
16 5 0.31
ACGTcount: A:0.09, C:0.19, G:0.03, T:0.69
Consensus pattern (16 bp):
TTTTCTTTGCTTATAC
Found at i:38066654 original size:14 final size:14
Alignment explanation
Indices: 38066623--38066655 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
38066613 CTAAAGAGAC
*
38066623 TGAAAAGAAAATGA
1 TGAAAAGAAAAAGA
38066637 -GAAAAGAAAAAGA
1 TGAAAAGAAAAAGA
38066650 TGAAAA
1 TGAAAA
38066656 ACAAAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.70, C:0.00, G:0.21, T:0.09
Consensus pattern (14 bp):
TGAAAAGAAAAAGA
Found at i:38070896 original size:818 final size:818
Alignment explanation
Indices: 38069321--38070957 Score: 3150
Period size: 818 Copynumber: 2.0 Consensus size: 818
38069311 CCTTCAAAAA
* * *
38069321 TGATACGATCACGGCTTCCCATAAGTCAAGTCCAAGTCGAGATTCGATGGTGCTACCTCAAGGGC
1 TGATACGATCACGGCTTCCCATAAGCCAAGTCCAAGCCGAGATCCGATGGTGCTACCTCAAGGGC
38069386 CAATCACAAGGGCTCGTGCAAAACAATTTAAAGAAGCCGTTATAGCTTTAGTTCAGCATGTGTGG
66 CAATCACAAGGGCTCGTGCAAAACAATTTAAAGAAGCCGTTATAGCTTTAGTTCAGCATGTGTGG
38069451 GATGATGTCAATGCTAGACCTATCGAACCAGTTAGTGGCCATTTTGGAAATCCATGCCGAACTTT
131 GATGATGTCAATGCTAGACCTATCGAACCAGTTAGTGGCCATTTTGGAAATCCATGCCGAACTTT
38069516 TCTACAAGTTCGGTTCAGCTCACCGAGCTCACCTTCAGTTCAAGTTAGCTCCCATGTAGCTCCAC
196 TCTACAAGTTCGGTTCAGCTCACCGAGCTCACCTTCAGTTCAAGTTAGCTCCCATGTAGCTCCAC
38069581 ACCAGCTTATTAGCTCGGGACCAGCTCATTATCAGCTCACGAATTTAAGCCCAGCTCGAGTTTAG
261 ACCAGCTTATTAGCTCGGGACCAGCTCATTATCAGCTCACGAATTTAAGCCCAGCTCGAGTTTAG
38069646 CTCATGAATTAACCATCAGCTCGTGGAGTTCACTTTGAATTCATTTGACTACTATTGAATTTTTA
326 CTCATGAATTAACCATCAGCTCGTGGAGTTCACTTTGAATTCATTTGACTACTATTGAATTTTTA
38069711 ATTAATAAGTTCAATAATTAGTTAATTAATATCCTACATATTAAATTTAGTTCACATTAGTTATA
391 ATTAATAAGTTCAATAATTAGTTAATTAATATCCTACATATTAAATTTAGTTCACATTAGTTATA
38069776 TTAAGTATGTCTTAAAAGTGTTAATTGATGATAATTAAATTTGTCATAACCGAATTTAATGTTGA
456 TTAAGTATGTCTTAAAAGTGTTAATTGATGATAATTAAATTTGTCATAACCGAATTTAATGTTGA
*
38069841 TATTTCTGTTCACATTAGTTTAACTTAATTCTGTTCACATTTCTTGTAGAAACGCAATGGACATA
521 TATTTCTGTTCACATTAGTTTAACTTAATTATGTTCACATTTCTTGTAGAAACGCAATGGACATA
* *
38069906 TGGAGATTAAAAGCAAGCATGAATTTTGAAGGTGCATGGACGGTTGGGGGACTTGAATCTCTTGG
586 TGGAGATTAAAAGCAAGCATGAATTTTGAAGGTACATGGACGGTTGGGGGACTTGAATCTCTTAG
38069971 GTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAATGTCTTTAAGGTTCATGAATGTTTCCA
651 GTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAATGTCTTTAAGGTTCATGAATGTTTCCA
38070036 TTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTGACCATTCGGCCAAAGGACACTCACACA
716 TTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTGACCATTCGGCCAAAGGACACTCACACA
*
38070101 TGCATGAAGATAGCTTGGCCAATTAGCTTCCCTATGAC
781 TGCATGAAGATAGCTTGGCCAATTAGCTTCCCCATGAC
38070139 TGATACGATCACGGCTTCCCATAAGCCAAGTCCAAGCCGAGATCCGATGGTGCTACCTCAAGGGC
1 TGATACGATCACGGCTTCCCATAAGCCAAGTCCAAGCCGAGATCCGATGGTGCTACCTCAAGGGC
38070204 CAATCACAAGGGCTCGTGCAAAACAATTTAAAGAAGCCGTTATAGCTTTAGTTCAGCATGTGTGG
66 CAATCACAAGGGCTCGTGCAAAACAATTTAAAGAAGCCGTTATAGCTTTAGTTCAGCATGTGTGG
38070269 GATGATGTCAATGCTAGACCTATCGAACCAGTTAGTGGCCATTTTGGAAATCCATGCCGAACTTT
131 GATGATGTCAATGCTAGACCTATCGAACCAGTTAGTGGCCATTTTGGAAATCCATGCCGAACTTT
38070334 TCTACAAGTTCGGTTCAGCTCACCGAGCTCACCTTCAGTTCAAGTTAGCTCCCATGTAGCTCCAC
196 TCTACAAGTTCGGTTCAGCTCACCGAGCTCACCTTCAGTTCAAGTTAGCTCCCATGTAGCTCCAC
38070399 ACCAGCTTATTAGCTCGGGACCAGCTCATTATCAGCTCACGAATTTAAGCCCAGCTCGAGTTTAG
261 ACCAGCTTATTAGCTCGGGACCAGCTCATTATCAGCTCACGAATTTAAGCCCAGCTCGAGTTTAG
38070464 CTCATGAATTAACCATCAGCTCGTGGAGTTCACTTTGAATTCATTTGACTACTATTGAATTTTTA
326 CTCATGAATTAACCATCAGCTCGTGGAGTTCACTTTGAATTCATTTGACTACTATTGAATTTTTA
38070529 ATTAATAAGTTCAATAATTAGTTAATTAATATCCTACATATTAAATTTAGTTCACATTAGTTATA
391 ATTAATAAGTTCAATAATTAGTTAATTAATATCCTACATATTAAATTTAGTTCACATTAGTTATA
*
38070594 TTAAGTATGTCTTAAAAGTGTTTATTGATGATAATTAAATTTGTCATAACCGAATTTAATGTTGA
456 TTAAGTATGTCTTAAAAGTGTTAATTGATGATAATTAAATTTGTCATAACCGAATTTAATGTTGA
* *
38070659 TATTTGTGTTCACATTAGTTTGAA-TTAATTATGTTCACATTTCTTGTAGGAACGCAATGGACAT
521 TATTTCTGTTCACATTAGTTT-AACTTAATTATGTTCACATTTCTTGTAGAAACGCAATGGACAT
*
38070723 ATGGAGATTAAAAGCAAGCATGAATTTTGAAGGTACATGGACGGTTGGGGGGCTTGAATCTCTTA
585 ATGGAGATTAAAAGCAAGCATGAATTTTGAAGGTACATGGACGGTTGGGGGACTTGAATCTCTTA
38070788 GGTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAATGTCTTTAAGGTTCATGAATGTTTCC
650 GGTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAATGTCTTTAAGGTTCATGAATGTTTCC
*
38070853 ATTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTGACCATTCGGCCAAAGGGCACTCACAC
715 ATTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTGACCATTCGGCCAAAGGACACTCACAC
38070918 ATGCATGAAGATAGCTTGGCCAATTAGCTTCCCCATGAC
780 ATGCATGAAGATAGCTTGGCCAATTAGCTTCCCCATGAC
38070957 T
1 T
38070958 CTCCTTAATT
Statistics
Matches: 806, Mismatches: 12, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
818 804 1.00
819 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (818 bp):
TGATACGATCACGGCTTCCCATAAGCCAAGTCCAAGCCGAGATCCGATGGTGCTACCTCAAGGGC
CAATCACAAGGGCTCGTGCAAAACAATTTAAAGAAGCCGTTATAGCTTTAGTTCAGCATGTGTGG
GATGATGTCAATGCTAGACCTATCGAACCAGTTAGTGGCCATTTTGGAAATCCATGCCGAACTTT
TCTACAAGTTCGGTTCAGCTCACCGAGCTCACCTTCAGTTCAAGTTAGCTCCCATGTAGCTCCAC
ACCAGCTTATTAGCTCGGGACCAGCTCATTATCAGCTCACGAATTTAAGCCCAGCTCGAGTTTAG
CTCATGAATTAACCATCAGCTCGTGGAGTTCACTTTGAATTCATTTGACTACTATTGAATTTTTA
ATTAATAAGTTCAATAATTAGTTAATTAATATCCTACATATTAAATTTAGTTCACATTAGTTATA
TTAAGTATGTCTTAAAAGTGTTAATTGATGATAATTAAATTTGTCATAACCGAATTTAATGTTGA
TATTTCTGTTCACATTAGTTTAACTTAATTATGTTCACATTTCTTGTAGAAACGCAATGGACATA
TGGAGATTAAAAGCAAGCATGAATTTTGAAGGTACATGGACGGTTGGGGGACTTGAATCTCTTAG
GTGCATGTTCGGCCAAGTGCATGTATGACCATATTCAATGTCTTTAAGGTTCATGAATGTTTCCA
TTCATGTATGGTGTGCTATCTCTTCATTCTCCAAGGTGACCATTCGGCCAAAGGACACTCACACA
TGCATGAAGATAGCTTGGCCAATTAGCTTCCCCATGAC
Found at i:38071744 original size:14 final size:14
Alignment explanation
Indices: 38071725--38071769 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
38071715 AACTCATCTT
*
38071725 AGTTTAATTAAATG
1 AGTTTAATTTAATG
*
38071739 AGTTT-ATTTGATG
1 AGTTTAATTTAATG
*
38071752 AATTTAATTTAATG
1 AGTTTAATTTAATG
38071766 AGTT
1 AGTT
38071770 GCTTCTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:38072784 original size:29 final size:29
Alignment explanation
Indices: 38072751--38072810 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
38072741 ATAACCAAAC
*
38072751 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
38072780 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
38072809 CT
1 CT
38072811 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:38072803 original size:15 final size:15
Alignment explanation
Indices: 38072757--38072804 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
38072747 AAACCTACAA
*
38072757 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
38072772 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
38072786 AAACTTCATATCCAT
1 AAACTTCATATCCAT
38072801 AAAC
1 AAAC
38072805 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:38073413 original size:14 final size:14
Alignment explanation
Indices: 38073391--38073438 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
38073381 ACCTAAACCG
* *
38073391 ACCAATTTGTTCAT
1 ACCATTTTGTTCCT
38073405 ACCATTTTGTTCCT
1 ACCATTTTGTTCCT
* *
38073419 ACCCTTTCGTTCCT
1 ACCATTTTGTTCCT
38073433 ACCATT
1 ACCATT
38073439 CCATTCGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.19, C:0.31, G:0.06, T:0.44
Consensus pattern (14 bp):
ACCATTTTGTTCCT
Found at i:38073781 original size:21 final size:21
Alignment explanation
Indices: 38073755--38073817 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
38073745 TTGGTATTTG
38073755 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
38073776 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
38073797 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
38073818 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:38077159 original size:27 final size:27
Alignment explanation
Indices: 38077128--38077203 Score: 68
Period size: 27 Copynumber: 2.8 Consensus size: 27
38077118 TTACTTTCTC
38077128 CTTTTTCACTCTTCTCTTTTTCAA-ATT
1 CTTTTTCACT-TTCTCTTTTTCAATATT
* * *
38077155 CTTTTTTCGCTTTTTCTTTTTCAATTTT
1 C-TTTTTCACTTTCTCTTTTTCAATATT
38077183 CTTTTCTTCA-TTT-TCTTTTTC
1 C-TTT-TTCACTTTCTCTTTTTC
38077204 TTTCACTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
27 21 0.50
28 18 0.43
29 3 0.07
ACGTcount: A:0.09, C:0.22, G:0.01, T:0.67
Consensus pattern (27 bp):
CTTTTTCACTTTCTCTTTTTCAATATT
Found at i:38077182 original size:13 final size:12
Alignment explanation
Indices: 38077166--38077285 Score: 72
Period size: 12 Copynumber: 10.0 Consensus size: 12
38077156 TTTTTTCGCT
38077166 TTTTCTTTTTCAA
1 TTTTCTTTTTC-A
38077179 TTTTCTTTTCTTCA
1 TTTTC-TTT-TTCA
38077193 TTTTCTTTTTC-
1 TTTTCTTTTTCA
* *
38077204 TTTCACTTTTTTGA
1 TTT-TC-TTTTTCA
38077218 -TTTCTTTTTC-
1 TTTTCTTTTTCA
** *
38077228 TTTTGCAATTTCT
1 TTTT-CTTTTTCA
*
38077241 TTTTCTTTTTCG
1 TTTTCTTTTTCA
*
38077253 TTTTCTTTTT-G
1 TTTTCTTTTTCA
38077264 TTTTC--TTTCA
1 TTTTCTTTTTCA
*
38077274 ATTTCTTTTTCA
1 TTTTCTTTTTCA
38077286 ATCTCTTTCT
Statistics
Matches: 85, Mismatches: 11, Indels: 23
0.71 0.09 0.19
Matches are distributed among these distances:
9 3 0.04
10 4 0.05
11 17 0.20
12 30 0.35
13 19 0.22
14 9 0.11
15 3 0.04
ACGTcount: A:0.08, C:0.17, G:0.03, T:0.72
Consensus pattern (12 bp):
TTTTCTTTTTCA
Found at i:38077182 original size:14 final size:14
Alignment explanation
Indices: 38077122--38077187 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 14
38077112 GCTCGATTAC
*
38077122 TTTCTCCTTTTTCAC
1 TTTCT-CTTTTTCAA
38077137 TCTTCTCTTTTTCAA
1 T-TTCTCTTTTTCAA
* **
38077152 ATTCT-TTTTTCGC
1 TTTCTCTTTTTCAA
*
38077165 TTTTTCTTTTTCAA
1 TTTCTCTTTTTCAA
38077179 TTT-TCTTTT
1 TTTCTCTTTT
38077188 CTTCATTTTC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
13 15 0.37
14 13 0.32
15 9 0.22
16 4 0.10
ACGTcount: A:0.09, C:0.23, G:0.02, T:0.67
Consensus pattern (14 bp):
TTTCTCTTTTTCAA
Found at i:38077195 original size:14 final size:14
Alignment explanation
Indices: 38077129--38077202 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
38077119 TACTTTCTCC
* *
38077129 TTTTTCACTCTTCT
1 TTTTTCAATTTTCT
*
38077143 CTTTTTCAA-ATTCT
1 -TTTTTCAATTTTCT
**
38077157 TTTTTCGCTTTT-T
1 TTTTTCAATTTTCT
38077170 CTTTTTCAATTTTCT
1 -TTTTTCAATTTTCT
38077185 TTTCTTC-ATTTTCT
1 TTT-TTCAATTTTCT
38077199 TTTT
1 TTTT
38077203 CTTTCACTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
13 8 0.17
14 29 0.60
15 11 0.23
ACGTcount: A:0.09, C:0.20, G:0.01, T:0.69
Consensus pattern (14 bp):
TTTTTCAATTTTCT
Found at i:38077202 original size:15 final size:15
Alignment explanation
Indices: 38077166--38077205 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
38077156 TTTTTTCGCT
38077166 TTTTCTTTTTC--AA
1 TTTTCTTTTTCTTAA
*
38077179 TTTTC-TTTTCTTCA
1 TTTTCTTTTTCTTAA
38077193 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
38077206 TCACTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
12 5 0.22
13 5 0.22
14 6 0.26
15 7 0.30
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTCTTTTTCTTAA
Found at i:38077284 original size:6 final size:6
Alignment explanation
Indices: 38077164--38077271 Score: 76
Period size: 6 Copynumber: 17.7 Consensus size: 6
38077154 TCTTTTTTCG
* * **
38077164 CTTTTT CTTTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTTTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
* * ** *
38077215 -TGATTT CTTTTT CTTTTG CAATTT CTTTTT CTTTTT CGTTTT CTTTTT
1 CT-TTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
*
38077263 -GTTTT CTTT
1 CTTTTT CTTT
38077272 CAATTTCTTT
Statistics
Matches: 76, Mismatches: 21, Indels: 10
0.71 0.20 0.09
Matches are distributed among these distances:
5 5 0.07
6 58 0.76
7 10 0.13
8 3 0.04
ACGTcount: A:0.06, C:0.17, G:0.04, T:0.73
Consensus pattern (6 bp):
CTTTTT
Found at i:38078329 original size:10 final size:10
Alignment explanation
Indices: 38078314--38078344 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
38078304 TTTTGCTCAC
38078314 CTTTTTTTTT
1 CTTTTTTTTT
38078324 CTTTTTTTTTT
1 C-TTTTTTTTT
38078335 CTTTTTTTTT
1 CTTTTTTTTT
38078345 TGAATTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:38078330 original size:12 final size:11
Alignment explanation
Indices: 38078315--38078345 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
38078305 TTTGCTCACC
38078315 TTTTTTTTTCT
1 TTTTTTTTTCT
38078326 TTTTTTTTTCT
1 TTTTTTTTTCT
38078337 TTTTTTTTT
1 TTTTTTTTT
38078346 GAATTTCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.00, C:0.06, G:0.00, T:0.94
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:38080594 original size:30 final size:30
Alignment explanation
Indices: 38080538--38080594 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
38080528 TGGGCTCAAA
* **
38080538 TCAAGAAAATCAAGATTCACTTTCTTGTTT
1 TCAAGAAAATCAAGAATCACAATCTTGTTT
38080568 TCAAGAAAATCAAGAAATCA-AATCTTG
1 TCAAGAAAATCAAG-AATCACAATCTTG
38080595 GCCCAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
30 19 0.83
31 4 0.17
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (30 bp):
TCAAGAAAATCAAGAATCACAATCTTGTTT
Found at i:38085350 original size:17 final size:18
Alignment explanation
Indices: 38085328--38085368 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
38085318 CATTTCTTTT
38085328 TCTTTTGAATCACTC-TC
1 TCTTTTGAATCACTCATC
**
38085345 TCTTTTTTATCACTCATC
1 TCTTTTGAATCACTCATC
38085363 T-TTTTG
1 TCTTTTG
38085369 TTTTTCTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.15, C:0.24, G:0.05, T:0.56
Consensus pattern (18 bp):
TCTTTTGAATCACTCATC
Found at i:38087631 original size:13 final size:14
Alignment explanation
Indices: 38087604--38087636 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
38087594 CCGTATGCAA
38087604 TTTTTTTTCAAAATT
1 TTTTTTTTC-AAATT
38087619 TTTTTTTTC-AATT
1 TTTTTTTTCAAATT
38087632 TTTTT
1 TTTTT
38087637 CGATTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
15 9 0.50
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTTTTTCAAATT
Found at i:38087633 original size:10 final size:10
Alignment explanation
Indices: 38087620--38087657 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
38087610 TTCAAAATTT
*
38087620 TTTTTTTCAA
1 TTTTTTTCGA
38087630 TTTTTTTCGA
1 TTTTTTTCGA
38087640 TTTTTTTCGA
1 TTTTTTTCGA
38087650 TTTCTTTT
1 TTT-TTTT
38087658 TTTTACGGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 22 0.85
11 4 0.15
ACGTcount: A:0.11, C:0.11, G:0.05, T:0.74
Consensus pattern (10 bp):
TTTTTTTCGA
Found at i:38087692 original size:103 final size:101
Alignment explanation
Indices: 38087551--38087857 Score: 477
Period size: 94 Copynumber: 3.1 Consensus size: 101
38087541 CCAGACTCTT
*
38087551 TTTTTTTTACGGATCTTTCACGTTCTTTTTGTCCGCACCTAGACCGTATGCAA-TTTTTTTTCAA
1 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCACCTAGACCGTATGCAATTTTTTTTTCAA
38087615 AATTTTTTTTTTCAATTTTTTTCGATTTTTTTCGATTTC
66 AA-TTTTTTTTTCAATTTTTTTC-ATTTTTTT-GATTTC
38087654 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCACCTAGACCGTATGCAATTTTTTTTTCAA
1 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCACCTAGACCGTATGCAATTTTTTTTTCAA
*
38087719 AATTTTTTTTTCAA-----TT--TTTTTTAGATTTC
66 AATTTTTTTTTCAATTTTTTTCATTTTTTTGATTTC
* *
38087748 TTTTTTTTACAGATCTTTCACGTTCTTTTCGTCCGCACCTAGACCGTATGTAATTTTTTTTTCAA
1 TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCACCTAGACCGTATGCAATTTTTTTTTCAA
*
38087813 AATTTTTTTTTCAATTTTTTTCAATTTTTTTTATTTC
66 AATTTTTTTTTCAATTTTTTTC-ATTTTTTTGATTTC
38087850 TTTTTTTT
1 TTTTTTTT
38087858 GAATCTACAA
Statistics
Matches: 189, Mismatches: 6, Indels: 19
0.88 0.03 0.09
Matches are distributed among these distances:
94 83 0.44
95 6 0.03
98 2 0.01
99 2 0.01
102 19 0.10
103 64 0.34
104 13 0.07
ACGTcount: A:0.17, C:0.17, G:0.08, T:0.57
Consensus pattern (101 bp):
TTTTTTTTACGGATCTTTCACGTTCTTTTCGTCCGCACCTAGACCGTATGCAATTTTTTTTTCAA
AATTTTTTTTTCAATTTTTTTCATTTTTTTGATTTC
Found at i:38087734 original size:12 final size:12
Alignment explanation
Indices: 38087704--38087740 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 12
38087694 AGACCGTATG
38087704 CAATTTTTTTTT
1 CAATTTTTTTTT
38087716 CAAAATTTTTTTTT
1 C--AATTTTTTTTT
38087730 CAATTTTTTTT
1 CAATTTTTTTT
38087741 AGATTTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 11 0.48
14 12 0.52
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.70
Consensus pattern (12 bp):
CAATTTTTTTTT
Found at i:38087830 original size:10 final size:10
Alignment explanation
Indices: 38087817--38087843 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
38087807 TTTCAAAATT
38087817 TTTTTTTCAA
1 TTTTTTTCAA
38087827 TTTTTTTCAA
1 TTTTTTTCAA
38087837 TTTTTTT
1 TTTTTTT
38087844 TATTTCTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTTTCAA
Found at i:38087842 original size:12 final size:12
Alignment explanation
Indices: 38087799--38087844 Score: 60
Period size: 14 Copynumber: 3.8 Consensus size: 12
38087789 GACCGTATGT
38087799 AATTTTTTTTTC
1 AATTTTTTTTTC
38087811 AAAATTTTTTTTTC
1 --AATTTTTTTTTC
38087825 AA--TTTTTTTC
1 AATTTTTTTTTC
38087835 AATTTTTTTT
1 AATTTTTTTT
38087845 ATTTCTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 10 0.33
12 8 0.27
14 12 0.40
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.72
Consensus pattern (12 bp):
AATTTTTTTTTC
Found at i:38087854 original size:24 final size:24
Alignment explanation
Indices: 38087802--38087857 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
38087792 CGTATGTAAT
38087802 TTTTTTTTCAAAATTTTTTTTTCA
1 TTTTTTTTCAAAATTTTTTTTTCA
* **
38087826 ATTTTTTTCAATTTTTTTTATTTC-
1 TTTTTTTTCAAAATTTTTT-TTTCA
38087850 TTTTTTTT
1 TTTTTTTT
38087858 GAATCTACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (24 bp):
TTTTTTTTCAAAATTTTTTTTTCA
Found at i:38092005 original size:16 final size:16
Alignment explanation
Indices: 38091984--38092015 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
38091974 TAATGTGTTT
38091984 TGCTGCTGTTGTTTAA
1 TGCTGCTGTTGTTTAA
38092000 TGCTGCTGTTGTTTAA
1 TGCTGCTGTTGTTTAA
38092016 ATGCAGAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.12, G:0.25, T:0.50
Consensus pattern (16 bp):
TGCTGCTGTTGTTTAA
Found at i:38092197 original size:45 final size:45
Alignment explanation
Indices: 38092129--38092482 Score: 582
Period size: 45 Copynumber: 7.9 Consensus size: 45
38092119 AAGAGGTGGA
** * * *
38092129 CAACATCATGCATAATTTGTGGAACAAATTAAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
38092174 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGGATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
38092219 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
38092264 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
38092309 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
38092354 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
38092399 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* * * *
38092444 CAACATCATGCATAATTTAAGGAACAAATTGAGGAAGCA
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCA
38092483 CCATGGCCGA
Statistics
Matches: 291, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 291 1.00
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.26
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:38098788 original size:29 final size:29
Alignment explanation
Indices: 38098722--38098778 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
38098712 GATTCAAAGA
*
38098722 TGGGTTTATGGATATGAAGTTTATGTAGT
1 TGGGTTTATGGATATAAAGTTTATGTAGT
*
38098751 TGGGTTTATGGATATAAAGTTTTTGTAG
1 TGGGTTTATGGATATAAAGTTTATGTAG
38098779 GTTTGGTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.46
Consensus pattern (29 bp):
TGGGTTTATGGATATAAAGTTTATGTAGT
Found at i:38100640 original size:22 final size:22
Alignment explanation
Indices: 38100612--38100655 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
38100602 TTTTGAACCA
38100612 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
38100634 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
38100656 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:38101359 original size:14 final size:14
Alignment explanation
Indices: 38101317--38101361 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
38101307 TTAAAGAAGC
38101317 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
38101331 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
38101344 AACTCATTTAATTA
1 AACTCATTAAATTA
38101358 AACT
1 AACT
38101362 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:38102895 original size:22 final size:22
Alignment explanation
Indices: 38102844--38102909 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
38102834 GGTATTTGGG
* *
38102844 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
38102865 AATTGGTACGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
* *
38102887 ATTTGGTACGAATTGGTAATGGT
1 AATTGGTACGAAATGGT-ATGGT
38102910 TCAGAAGGAC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
21 19 0.49
22 15 0.38
23 5 0.13
ACGTcount: A:0.30, C:0.05, G:0.30, T:0.35
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:38105377 original size:18 final size:18
Alignment explanation
Indices: 38105352--38105397 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
38105342 CAAACTCTTT
*
38105352 TCTCTTTTTCAATCTCAT
1 TCTCTTTTTCAATCTCAA
* *
38105370 TTTCTTTTTCACTCTCAA
1 TCTCTTTTTCAATCTCAA
38105388 TCTCTTTTTC
1 TCTCTTTTTC
38105398 TTTTTCTTTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.28, G:0.00, T:0.59
Consensus pattern (18 bp):
TCTCTTTTTCAATCTCAA
Found at i:38106404 original size:14 final size:14
Alignment explanation
Indices: 38106362--38106406 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
38106352 TTAAAGAAGC
38106362 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
38106376 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
38106389 AACTCATTTAATTA
1 AACTCATTAAATTA
38106403 AACT
1 AACT
38106407 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:38107949 original size:22 final size:22
Alignment explanation
Indices: 38107890--38107955 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 22
38107880 GGTATTTGGG
* *
38107890 AATTGGTTCGAAATAGTATGG-
1 AATTGGTACGAAATGGTATGGT
38107911 AATTGGTACGAAATGGTATGGT
1 AATTGGTACGAAATGGTATGGT
* * *
38107933 ATTTGGTATGAATTGGTAATGGT
1 AATTGGTACGAAATGGT-ATGGT
38107956 TCAGAAGGAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
21 19 0.50
22 14 0.37
23 5 0.13
ACGTcount: A:0.30, C:0.03, G:0.30, T:0.36
Consensus pattern (22 bp):
AATTGGTACGAAATGGTATGGT
Found at i:38110403 original size:24 final size:24
Alignment explanation
Indices: 38110376--38110444 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 24
38110366 TTCACATTCT
*
38110376 TTCTCTCTCTCAAACTCTTTTTCA
1 TTCTCTCTCTCAATCTCTTTTTCA
* * * *
38110400 TTCTCTTTTTCAATCTCATTTTCT
1 TTCTCTCTCTCAATCTCTTTTTCA
* *
38110424 TTTTCACTCTCAATCTCTTTT
1 TTCTCTCTCTCAATCTCTTTT
38110445 CTTTTCTTTC
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.14, C:0.29, G:0.00, T:0.57
Consensus pattern (24 bp):
TTCTCTCTCTCAATCTCTTTTTCA
Found at i:38110418 original size:18 final size:18
Alignment explanation
Indices: 38110397--38110444 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
38110387 AAACTCTTTT
38110397 TCATTCTCTTTTTCAATC
1 TCATTCTCTTTTTCAATC
* *
38110415 TCATTTTCTTTTTCACTC
1 TCATTCTCTTTTTCAATC
*
38110433 TCAATCTCTTTT
1 TCATTCTCTTTT
38110445 CTTTTCTTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (18 bp):
TCATTCTCTTTTTCAATC
Found at i:38111450 original size:14 final size:14
Alignment explanation
Indices: 38111408--38111452 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
38111398 TTAAAGAAGC
38111408 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
38111422 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
38111435 AACTCATTTAATTA
1 AACTCATTAAATTA
38111449 AACT
1 AACT
38111453 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:38116327 original size:18 final size:17
Alignment explanation
Indices: 38116293--38116326 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
38116283 TTTCTTTTGA
38116293 ATCACTCTCTCTTTTTT
1 ATCACTCTCTCTTTTTT
38116310 ATCACTCATCT-TTTTTT
1 ATCACTC-TCTCTTTTTT
38116327 TTCTTCTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.15, C:0.26, G:0.00, T:0.59
Consensus pattern (17 bp):
ATCACTCTCTCTTTTTT
Found at i:38120547 original size:22 final size:22
Alignment explanation
Indices: 38120519--38120562 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
38120509 TTTTGAACCA
38120519 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
38120541 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
38120563 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:38123728 original size:4 final size:4
Alignment explanation
Indices: 38123701--38123742 Score: 50
Period size: 4 Copynumber: 10.2 Consensus size: 4
38123691 GAATATTGAC
*
38123701 ATAA A-AA ATTAA ACTAA GTAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA A-TAA A-TAA ATAA ATAA ATAA ATAA ATAA ATAA A
38123743 AATAAAACTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
3 3 0.09
4 24 0.73
5 6 0.18
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:38124964 original size:12 final size:12
Alignment explanation
Indices: 38124947--38124989 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
38124937 CCGTTTGCAA
38124947 TTTTTTTTCAAT
1 TTTTTTTTCAAT
38124959 TTTTTTTTCAAT
1 TTTTTTTTCAAT
*
38124971 TTTTTTTTCGAT
1 TTTTTTTTCAAT
38124983 TTTTTTT
1 TTTTTTT
38124990 GAATCTACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTTTTTTCAAT
Found at i:38131104 original size:6 final size:6
Alignment explanation
Indices: 38131091--38131126 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
38131081 TCAATTTTTT
* *
38131091 TCTCAA TATCAA TATCAA TCTCAA TCTCAA TCTCAA
1 TCTCAA TCTCAA TCTCAA TCTCAA TCTCAA TCTCAA
38131127 ATTCTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.39, C:0.28, G:0.00, T:0.33
Consensus pattern (6 bp):
TCTCAA
Found at i:38131178 original size:21 final size:20
Alignment explanation
Indices: 38131134--38131178 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
38131124 CAAATTCTTT
*
38131134 TTTCTTTTTCTCACTCTCAT
1 TTTCTTTTTCTCACTCTCAA
* *
38131154 TTTCTTTTTTTCTTCTCTCAA
1 TTTCTTTTTCTC-ACTCTCAA
38131175 TTTC
1 TTTC
38131179 ATTCAAGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.09, C:0.27, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTCTTTTTCTCACTCTCAA
Found at i:38132015 original size:27 final size:29
Alignment explanation
Indices: 38131984--38132052 Score: 97
Period size: 27 Copynumber: 2.4 Consensus size: 29
38131974 TTTCAATCAC
*
38131984 TCTTTTTTTTTTCAATTTTG-A-TTTTTT
1 TCTTTTTTTTTTCAATTTCGAATTTTTTT
*
38132011 TCTTTTTTTTTTTAATTTCGAATTTTTTT
1 TCTTTTTTTTTTCAATTTCGAATTTTTTT
38132040 TCTTCTTTTTTTT
1 TCTT-TTTTTTTT
38132053 TCTTCAATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 18 0.49
28 1 0.03
29 10 0.27
30 8 0.22
ACGTcount: A:0.10, C:0.09, G:0.03, T:0.78
Consensus pattern (29 bp):
TCTTTTTTTTTTCAATTTCGAATTTTTTT
Found at i:38132057 original size:13 final size:13
Alignment explanation
Indices: 38132033--38132057 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
38132023 TAATTTCGAA
38132033 TTTTTTTTCTTCT
1 TTTTTTTTCTTCT
38132046 TTTTTTTTCTTC
1 TTTTTTTTCTTC
38132058 AATACTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTTTCTTCT
Found at i:38132150 original size:11 final size:11
Alignment explanation
Indices: 38132099--38132140 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
38132089 AATACAAACT
38132099 TTTTTTTTGAA
1 TTTTTTTTGAA
*
38132110 TTTTTTTTCAAAA
1 TTTTTTTT--GAA
38132123 TTTTTTTTGAA
1 TTTTTTTTGAA
38132134 TTTTTTT
1 TTTTTTT
38132141 ATATTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 17 0.63
13 10 0.37
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.74
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:38132150 original size:24 final size:24
Alignment explanation
Indices: 38132093--38132140 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
38132083 AAATTGAATA
38132093 CAAACTTTTTTTTTGAATTTTTTTT
1 CAAA-TTTTTTTTTGAATTTTTTTT
*
38132118 CAAAATTTTTTTTGAATTTTTTT
1 CAAATTTTTTTTTGAATTTTTTT
38132141 ATATTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.23, C:0.06, G:0.04, T:0.67
Consensus pattern (24 bp):
CAAATTTTTTTTTGAATTTTTTTT
Found at i:38135888 original size:42 final size:42
Alignment explanation
Indices: 38135829--38135934 Score: 203
Period size: 42 Copynumber: 2.5 Consensus size: 42
38135819 CATTTAAGCC
38135829 TCTTAGTTTAATAAATGAGTTGCTGGTCATTAATACAACTCA
1 TCTTAGTTTAATAAATGAGTTGCTGGTCATTAATACAACTCA
38135871 TCTTAGTTTAATAAATGAGTTGCTGGTCATTAATACAACTCA
1 TCTTAGTTTAATAAATGAGTTGCTGGTCATTAATACAACTCA
38135913 TCTTAGTTTAATTAAATGAGTT
1 TCTTAGTTTAA-TAAATGAGTT
38135935 TATTTAATGA
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 53 0.84
43 10 0.16
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (42 bp):
TCTTAGTTTAATAAATGAGTTGCTGGTCATTAATACAACTCA
Found at i:38135936 original size:14 final size:14
Alignment explanation
Indices: 38135917--38135961 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
38135907 AACTCATCTT
*
38135917 AGTTTAATTAAATG
1 AGTTTAATTTAATG
38135931 AGTTT-ATTTAATG
1 AGTTTAATTTAATG
*
38135944 AATTTAATTTAATG
1 AGTTTAATTTAATG
38135958 AGTT
1 AGTT
38135962 GCTTCTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:38140029 original size:30 final size:31
Alignment explanation
Indices: 38139984--38140044 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
38139974 AGATTGAGAG
* *
38139984 TGAAAAGGAATTTGAAACAAA-AA-AGAAAAT
1 TGAAAAAGAAGTTGAAA-AAAGAAGAGAAAAT
38140014 TGAAAAAGAAGTTGAAAAAAGAAGAGAAAAT
1 TGAAAAAGAAGTTGAAAAAAGAAGAGAAAAT
38140045 GAGTTAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 3 0.11
30 17 0.63
31 7 0.26
ACGTcount: A:0.64, C:0.02, G:0.20, T:0.15
Consensus pattern (31 bp):
TGAAAAAGAAGTTGAAAAAAGAAGAGAAAAT
Found at i:38142972 original size:4 final size:4
Alignment explanation
Indices: 38142963--38142993 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
38142953 TTAAACTAAG
38142963 TAAA TAAA TAAA TAAA TAAA TAAA -AAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
38142994 AATAAAACTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:38144398 original size:23 final size:22
Alignment explanation
Indices: 38144346--38144398 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
38144336 TCCACGTCTT
*
38144346 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
38144368 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
38144391 TTTCTTTT
1 TTTCTTTT
38144399 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:38146757 original size:4 final size:4
Alignment explanation
Indices: 38146748--38146783 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
38146738 TTAAACTAAG
*
38146748 TAAA TAAA TAAG TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
38146784 AATAAAACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:38146761 original size:12 final size:12
Alignment explanation
Indices: 38146739--38146782 Score: 70
Period size: 12 Copynumber: 3.6 Consensus size: 12
38146729 CATAAAAATT
38146739 TAAACTAAGTAAA
1 TAAA-TAAGTAAA
38146752 TAAATAAGTAAA
1 TAAATAAGTAAA
*
38146764 TAAATAAATAAA
1 TAAATAAGTAAA
38146776 TAAATAA
1 TAAATAA
38146783 AAATAAAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 26 0.87
13 4 0.13
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.25
Consensus pattern (12 bp):
TAAATAAGTAAA
Found at i:38154290 original size:16 final size:15
Alignment explanation
Indices: 38154264--38154293 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
38154254 TTTCAATCCA
38154264 TCATCCCAATCAAAG
1 TCATCCCAATCAAAG
38154279 TCATCACCAATCAAA
1 TCATC-CCAATCAAA
38154294 AATTGATACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.33, G:0.03, T:0.20
Consensus pattern (15 bp):
TCATCCCAATCAAAG
Found at i:38155861 original size:21 final size:20
Alignment explanation
Indices: 38155837--38155876 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
38155827 ATTGAATACA
38155837 AATTTTTTTTCAATTTTTTTT
1 AATTTTTTTTC-ATTTTTTTT
*
38155858 AATTTTTTTTCCTTTTTTT
1 AATTTTTTTTCATTTTTTT
38155877 ACAATATCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (20 bp):
AATTTTTTTTCATTTTTTTT
Found at i:38155867 original size:10 final size:11
Alignment explanation
Indices: 38155837--38155881 Score: 58
Period size: 10 Copynumber: 4.3 Consensus size: 11
38155827 ATTGAATACA
38155837 AATTTTTTTTC
1 AATTTTTTTTC
38155848 AATTTTTTTT-
1 AATTTTTTTTC
38155858 AATTTTTTTTC
1 AATTTTTTTTC
* *
38155869 -CTTTTTTTAC
1 AATTTTTTTTC
38155879 AAT
1 AAT
38155882 ATCGAAATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
10 18 0.62
11 11 0.38
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.71
Consensus pattern (11 bp):
AATTTTTTTTC
Found at i:38158631 original size:14 final size:14
Alignment explanation
Indices: 38158614--38158653 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
38158604 CGAACGGCAT
*
38158614 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
38158628 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
* *
38158642 GATATGAACAAA
1 GGTAGGAACAAA
38158654 TTGGTCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:38171968 original size:13 final size:12
Alignment explanation
Indices: 38171950--38172000 Score: 63
Period size: 12 Copynumber: 4.5 Consensus size: 12
38171940 TATACAAGTT
38171950 AAAAAAAATTCG
1 AAAAAAAATTCG
38171962 -AAAAAAATTCG
1 AAAAAAAATTCG
*
38171973 AAAAAAAAAT--
1 AAAAAAAATTCG
*
38171983 AAAAAAAATTTG
1 AAAAAAAATTCG
38171995 AAAAAA
1 AAAAAA
38172001 GTGATTTATG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 9 0.26
11 11 0.32
12 14 0.41
ACGTcount: A:0.75, C:0.04, G:0.06, T:0.16
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:38172000 original size:11 final size:11
Alignment explanation
Indices: 38171951--38171979 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
38171941 ATACAAGTTA
38171951 AAAAAAATTCG
1 AAAAAAATTCG
38171962 AAAAAAATTCG
1 AAAAAAATTCG
38171973 AAAAAAA
1 AAAAAAA
38171980 AATAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.72, C:0.07, G:0.07, T:0.14
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:38175472 original size:245 final size:242
Alignment explanation
Indices: 38175038--38175514 Score: 873
Period size: 245 Copynumber: 2.0 Consensus size: 242
38175028 ATAAAGAGGC
*
38175038 GCACGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTACGAAAGATCCTAGACGAACAG
1 GCACGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTACGAAAGATCCTAGACAAACAG
* *
38175103 ATCTGAAATCAAAAACAAAGATTAAGATTAAACCGAATCAGATTTGAATTTAAAATTCCCAAATT
66 ATCTGAAAACAAAAACAAAGATTAAGATTAAACCAAATCAGATTTGAATTTAAAATTCCCAAATT
38175168 CAATTAAAAGAGCAGCAAGAAGAAAAGAAATAGAATCGATGAATCAAACGAAATTGAGAAGAAAG
131 CAATTAAAAGAGCAGCAAGAAGAAAAGAAATAGAATCGATGAATCAAACGAAATTGAGAAGAAAG
38175233 AAAAGATGCGAATCTGCCAAGGAATTGATTCGGCCAATGATATGGAG
196 AAAAGATGCGAATCTGCCAAGGAATTGATTCGGCCAATGATATGGAG
* *
38175280 GCACGCGCAGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTACGAAAGGTCCTAGACAAAT
1 GCACGCG--GACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTACGAAAGATCCTAGACAAAC
*
38175345 AGATCTGAAAACAGAAACAAAGATTAAGATTAAACCCAAATCAGATTTGAATTTAAAATTCCCAA
64 AGATCTGAAAACAAAAACAAAGATTAAGATTAAA-CCAAATCAGATTTGAATTTAAAATTCCCAA
38175410 ATTCAATTAAAAGAGCAGCAAGAAGAAAAGAAATAGAATCGATGAATCAAACGAAATTGAGAAGA
128 ATTCAATTAAAAGAGCAGCAAGAAGAAAAGAAATAGAATCGATGAATCAAACGAAATTGAGAAGA
38175475 AAGAAAAGATGCGAATCTGCCAAGGAATTGATTCGGCCAA
193 AAGAAAAGATGCGAATCTGCCAAGGAATTGATTCGGCCAA
38175515 GAATGCCCAA
Statistics
Matches: 226, Mismatches: 6, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
242 7 0.03
244 85 0.38
245 134 0.59
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.18
Consensus pattern (242 bp):
GCACGCGGACCAAGATCGAGTTGCCAAGTCACGAGAAACTCCTACGAAAGATCCTAGACAAACAG
ATCTGAAAACAAAAACAAAGATTAAGATTAAACCAAATCAGATTTGAATTTAAAATTCCCAAATT
CAATTAAAAGAGCAGCAAGAAGAAAAGAAATAGAATCGATGAATCAAACGAAATTGAGAAGAAAG
AAAAGATGCGAATCTGCCAAGGAATTGATTCGGCCAATGATATGGAG
Found at i:38186926 original size:22 final size:22
Alignment explanation
Indices: 38186898--38186941 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
38186888 TTTTGAACCA
38186898 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
*
38186920 TTACCATTTCGTACCAATTCCC
1 TTACCATTTCGTACCAAATCCC
38186942 AAATACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.36, G:0.05, T:0.34
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:38190025 original size:30 final size:30
Alignment explanation
Indices: 38189991--38190087 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
38189981 AGCTCACTCC
*
38189991 TAGCTCACTTTCAACTCACGAGCTAAACCT
1 TAGCTCACTTTCAGCTCACGAGCTAAACCT
* * * * * *
38190021 TAGCTTAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGC-TCACTTTCAGCTCACGAGCTAAACCT
* *
38190051 TAGCTCAACTTT-AGCTCACGAACTAAAGCT
1 TAGCTC-ACTTTCAGCTCACGAGCTAAACCT
38190081 TAGCTCA
1 TAGCTCA
38190088 TTTTAGTTTA
Statistics
Matches: 49, Mismatches: 15, Indels: 7
0.69 0.21 0.10
Matches are distributed among these distances:
29 2 0.04
30 42 0.86
31 5 0.10
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (30 bp):
TAGCTCACTTTCAGCTCACGAGCTAAACCT
Found at i:38194186 original size:16 final size:15
Alignment explanation
Indices: 38194165--38194232 Score: 75
Period size: 16 Copynumber: 4.3 Consensus size: 15
38194155 ACATTCTTGT
38194165 AAAGAAAAAACAAAGA
1 AAAGAAAAAA-AAAGA
38194181 AAAGAAAAGAAAAAGA
1 AAAGAAAA-AAAAAGA
*
38194197 AAA-AGAAGAAAAAGA
1 AAAGA-AAAAAAAAGA
*
38194212 AAACGAAATAAAAAGA
1 AAA-GAAAAAAAAAGA
38194228 AAAGA
1 AAAGA
38194233 GAGGCAAAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
15 13 0.28
16 30 0.65
17 3 0.07
ACGTcount: A:0.79, C:0.03, G:0.16, T:0.01
Consensus pattern (15 bp):
AAAGAAAAAAAAAGA
Found at i:38194191 original size:21 final size:21
Alignment explanation
Indices: 38194166--38194230 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 21
38194156 CATTCTTGTA
38194166 AAGAAAAA-ACAAAGAAAAG-AA
1 AAGAAAAAGA-AAA-AAAAGAAA
*
38194187 AAGAAAAAGAAAAAGAAGAAA
1 AAGAAAAAGAAAAAAAAGAAA
*
38194208 AAGAAAACGAAATAAAAAGAAA
1 AAGAAAAAGAAA-AAAAAGAAA
38194230 A
1 A
38194231 GAGAGGCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
20 4 0.11
21 24 0.63
22 10 0.26
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.02
Consensus pattern (21 bp):
AAGAAAAAGAAAAAAAAGAAA
Found at i:38194230 original size:6 final size:6
Alignment explanation
Indices: 38194165--38194219 Score: 50
Period size: 6 Copynumber: 10.2 Consensus size: 6
38194155 ACATTCTTGT
*
38194165 AAAGAA AAA-AC AAAG-A AAAG-A AAAGAA AAAGAA AAAG-- -AAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
*
38194207 AAAGAA AACGAA A
1 AAAGAA AAAGAA A
38194220 TAAAAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
3 3 0.07
5 13 0.32
6 25 0.61
ACGTcount: A:0.80, C:0.04, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:38194322 original size:18 final size:18
Alignment explanation
Indices: 38194295--38194350 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
38194285 AAAGCCTTTG
*
38194295 AAAAGCAAAAAGAAAATGA
1 AAAAG-AAAATGAAAATGA
* * *
38194314 AAATGAAAATGAGATTGA
1 AAAAGAAAATGAAAATGA
*
38194332 AAAAGAGAATGAAAA-GA
1 AAAAGAAAATGAAAATGA
38194349 AA
1 AA
38194351 TTTGAGAGAG
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
17 4 0.14
18 21 0.72
19 4 0.14
ACGTcount: A:0.68, C:0.02, G:0.20, T:0.11
Consensus pattern (18 bp):
AAAAGAAAATGAAAATGA
Found at i:38194335 original size:30 final size:30
Alignment explanation
Indices: 38194301--38194382 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
38194291 TTTGAAAAGC
**
38194301 AAAAAGAAAATGAAAATGAAA-ATGAGATTG
1 AAAAAGAAAATGAAAA-GAAATATGAGAGAG
* *
38194331 AAAAAGAGAATGAAAAGAAATTTGAGAGAG
1 AAAAAGAAAATGAAAAGAAATATGAGAGAG
**
38194361 AAAAAGAAGTTGAAAAAGAAAT
1 AAAAAGAAAATG-AAAAGAAAT
38194383 TGAAAAAGAG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 4 0.09
30 30 0.70
31 9 0.21
ACGTcount: A:0.63, C:0.00, G:0.22, T:0.15
Consensus pattern (30 bp):
AAAAAGAAAATGAAAAGAAATATGAGAGAG
Found at i:38194377 original size:12 final size:12
Alignment explanation
Indices: 38194360--38194404 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
38194350 ATTTGAGAGA
*
38194360 GAAAAAGAAGTT
1 GAAAAAGAAATT
38194372 GAAAAAGAAATT
1 GAAAAAGAAATT
*
38194384 GAAAAAGAGATT
1 GAAAAAGAAATT
*
38194396 -AAAGAGAAA
1 GAAAAAGAAA
38194405 GAAATTGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
11 7 0.24
12 22 0.76
ACGTcount: A:0.64, C:0.00, G:0.22, T:0.13
Consensus pattern (12 bp):
GAAAAAGAAATT
Found at i:38196614 original size:30 final size:30
Alignment explanation
Indices: 38196531--38196616 Score: 86
Period size: 30 Copynumber: 2.9 Consensus size: 30
38196521 CTAGCTCACT
* *
38196531 TTCAACTCAGGAGCTAAACCTTAGCTTAAC
1 TTCAGCTCAGGAGCTAAAGCTTAGCTTAAC
**
38196561 TTCAGCTTC-GGAG-TTTAGCCTTAGCTTAAC
1 TTCAGC-TCAGGAGCTAAAG-CTTAGCTTAAC
* *
38196591 TTTAGCTCACGAGCTAAAGCTTAGCT
1 TTCAGCTCAGGAGCTAAAGCTTAGCT
38196617 CATTTTAGTT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
29 4 0.09
30 35 0.80
31 5 0.11
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (30 bp):
TTCAGCTCAGGAGCTAAAGCTTAGCTTAAC
Found at i:38197215 original size:14 final size:14
Alignment explanation
Indices: 38197168--38197215 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
38197158 GTACGAATGG
*
38197168 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
38197182 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
38197196 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
38197210 ATTGGT
1 AATGGT
38197216 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:38202146 original size:14 final size:14
Alignment explanation
Indices: 38202099--38202146 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
38202089 GTACGAATGG
*
38202099 AATGGTAGGAACGA
1 AATGGTAGGAACAA
*
38202113 AAGGGTAGGAACAA
1 AATGGTAGGAACAA
*
38202127 AATGGTATGAACAA
1 AATGGTAGGAACAA
*
38202141 ATTGGT
1 AATGGT
38202147 CGGTTTAGGT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (14 bp):
AATGGTAGGAACAA
Found at i:38206381 original size:10 final size:10
Alignment explanation
Indices: 38206366--38206427 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
38206356 TTTGAACCAT
*
38206366 TACCAATTCG
1 TACCAATTCA
*
38206376 TACCAAATACCA
1 TACC-AAT-TCA
*
38206388 TACCATTTCA
1 TACCAATTCA
38206398 TACCAATTCCA
1 TACCAATT-CA
* *
38206409 TACCATTTCG
1 TACCAATTCA
38206419 TACCAATTC
1 TACCAATTC
38206428 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:38206411 original size:21 final size:21
Alignment explanation
Indices: 38206366--38206428 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
38206356 TTTGAACCAT
* *
38206366 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
38206388 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
38206409 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
38206429 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:38211464 original size:10 final size:10
Alignment explanation
Indices: 38211449--38211539 Score: 51
Period size: 10 Copynumber: 9.0 Consensus size: 10
38211439 ATGAAGAAGG
38211449 AATGAGCTGA
1 AATGAGCTGA
38211459 AATGAGCTGA
1 AATGAGCTGA
*
38211469 AACGAGCT-A
1 AATGAGCTGA
* *
38211478 AATTCGAACTCA
1 AA-T-GAGCTGA
*
38211490 AACGAGCTGA
1 AATGAGCTGA
* * *
38211500 ATTGAACTCA
1 AATGAGCTGA
*
38211510 AGTGAGCT-A
1 AATGAGCTGA
*
38211519 AATTGAGCTCA
1 AA-TGAGCTGA
*
38211530 AGTGAGCTGA
1 AATGAGCTGA
38211540 TGGGAGCTGA
Statistics
Matches: 61, Mismatches: 15, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
9 5 0.08
10 47 0.77
11 6 0.10
12 3 0.05
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.21
Consensus pattern (10 bp):
AATGAGCTGA
Found at i:38211531 original size:20 final size:20
Alignment explanation
Indices: 38211472--38211537 Score: 87
Period size: 20 Copynumber: 3.2 Consensus size: 20
38211462 GAGCTGAAAC
**
38211472 GAGCTAAATTCGAACTCAAAC
1 GAGCTAAATT-GAACTCAAGT
*
38211493 GAGCTGAATTGAACTCAAGT
1 GAGCTAAATTGAACTCAAGT
*
38211513 GAGCTAAATTGAGCTCAAGT
1 GAGCTAAATTGAACTCAAGT
38211533 GAGCT
1 GAGCT
38211538 GATGGGAGCT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
20 31 0.77
21 9 0.22
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (20 bp):
GAGCTAAATTGAACTCAAGT
Found at i:38219066 original size:21 final size:20
Alignment explanation
Indices: 38219040--38219077 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
38219030 TTTATTTCAT
38219040 TTTTTCTTTTTCTTCTTTTGC
1 TTTTTC-TTTTCTTCTTTTGC
38219061 TTTTTCTTTTCTT-TTTT
1 TTTTTCTTTTCTTCTTTT
38219078 TTTGTTTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 7 0.41
21 6 0.35
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTTCTTTTCTTCTTTTGC
Found at i:38219079 original size:15 final size:15
Alignment explanation
Indices: 38219021--38219087 Score: 59
Period size: 15 Copynumber: 4.5 Consensus size: 15
38219011 CTTTTGCCTC
*
38219021 TCTTTTCTTTTTATT
1 TCTTTTCTTTTTTTT
* *
38219036 TCATTT-TTTCTTTT
1 TCTTTTCTTTTTTTT
38219050 TC--TTCTTTTGCTTTT
1 TCTTTTCTTTT--TTTT
38219065 TCTTTTCTTTTTTTT
1 TCTTTTCTTTTTTTT
*
38219080 TGTTTTCT
1 TCTTTTCT
38219088 CGTTACAAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
12 2 0.05
13 3 0.07
14 8 0.19
15 22 0.52
17 7 0.17
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.79
Consensus pattern (15 bp):
TCTTTTCTTTTTTTT
Found at i:38222660 original size:30 final size:30
Alignment explanation
Indices: 38222575--38222671 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
38222565 TAAACTAAAA
* *
38222575 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * *
38222605 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
38222635 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
38222664 ATGAGCTA
1 -TGAGCTA
38222672 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:38222928 original size:19 final size:19
Alignment explanation
Indices: 38222904--38222943 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
38222894 AGCTCCCATG
38222904 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
38222923 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
38222942 TA
1 TA
38222944 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:38223133 original size:16 final size:16
Alignment explanation
Indices: 38223112--38223143 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
38223102 GTTATATTGA
38223112 TGATAATTAAATTTGT
1 TGATAATTAAATTTGT
38223128 TGATAATTAAATTTGT
1 TGATAATTAAATTTGT
38223144 CATAACTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (16 bp):
TGATAATTAAATTTGT
Found at i:38224913 original size:20 final size:20
Alignment explanation
Indices: 38224854--38224919 Score: 87
Period size: 20 Copynumber: 3.2 Consensus size: 20
38224844 GAGCTGAAAC
**
38224854 GAGCTAAATTCGAACTCAAAC
1 GAGCTAAATT-GAACTCAAGT
*
38224875 GAGCTGAATTGAACTCAAGT
1 GAGCTAAATTGAACTCAAGT
*
38224895 GAGCTAAATTGAGCTCAAGT
1 GAGCTAAATTGAACTCAAGT
38224915 GAGCT
1 GAGCT
38224920 GATGGGAGCT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
20 31 0.77
21 9 0.22
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (20 bp):
GAGCTAAATTGAACTCAAGT
Found at i:38229570 original size:12 final size:12
Alignment explanation
Indices: 38229553--38229577 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
38229543 TCACTCTCTT
38229553 TTTCTTTTTCAC
1 TTTCTTTTTCAC
38229565 TTTCTTTTTCAC
1 TTTCTTTTTCAC
38229577 T
1 T
38229578 CTCAATCTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.24, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTCTTTTTCAC
Found at i:38229618 original size:27 final size:25
Alignment explanation
Indices: 38229588--38229637 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 25
38229578 CTCAATCTCT
38229588 TTTTG-TTCTCTTTCGATCTCTTTTTCC
1 TTTTGCTT-TCTTTC-ATC-CTTTTTCC
38229615 TTTTGCTTTCTTTCATCCTTTTT
1 TTTTGCTTTCTTTCATCCTTTTT
38229638 TTTCTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 6 0.27
26 3 0.14
27 11 0.50
28 2 0.09
ACGTcount: A:0.04, C:0.24, G:0.06, T:0.66
Consensus pattern (25 bp):
TTTTGCTTTCTTTCATCCTTTTTCC
Found at i:38230881 original size:30 final size:30
Alignment explanation
Indices: 38230795--38230892 Score: 81
Period size: 30 Copynumber: 3.3 Consensus size: 30
38230785 TTAAACTAAA
* * *
38230795 ATGAGCTAAGCTTTAGCTTGTGAGCTAAAG
1 ATGAGCTAAGGTTTAGCTCGTGAGCTGAAG
* * * * * *
38230825 TTGAGCT-GGGATTAAACTCCTAAGCTGAAG
1 ATGAGCTAAGG-TTTAGCTCGTGAGCTGAAG
* *
38230855 CTGAGCTAAGGTTTAGCTCGTGAGCTGAAT
1 ATGAGCTAAGGTTTAGCTCGTGAGCTGAAG
38230885 ATGAGCTA
1 ATGAGCTA
38230893 GGAGTGAGCT
Statistics
Matches: 49, Mismatches: 17, Indels: 4
0.70 0.24 0.06
Matches are distributed among these distances:
29 1 0.02
30 46 0.94
31 2 0.04
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (30 bp):
ATGAGCTAAGGTTTAGCTCGTGAGCTGAAG
Found at i:38232827 original size:13 final size:13
Alignment explanation
Indices: 38232806--38232842 Score: 58
Period size: 12 Copynumber: 2.8 Consensus size: 13
38232796 TTCAGATTTT
38232806 TTTTCTTTTTGAAA
1 TTTT-TTTTTGAAA
38232820 TTTTTTTTTG-AA
1 TTTTTTTTTGAAA
38232832 TTTTTTTTTGA
1 TTTTTTTTTGA
38232843 CTTGTATAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.55
13 6 0.27
14 4 0.18
ACGTcount: A:0.16, C:0.03, G:0.08, T:0.73
Consensus pattern (13 bp):
TTTTTTTTTGAAA
Found at i:38234310 original size:30 final size:30
Alignment explanation
Indices: 38234224--38234321 Score: 81
Period size: 30 Copynumber: 3.3 Consensus size: 30
38234214 TTAAACTAAA
* * *
38234224 ATGAGCTAAGCTTTAGCTCGTGAGCTAAAG
1 ATGAGCTAAGGTTTAGCTCATGAGCTGAAG
* * * * * *
38234254 TTGAGCT-GGGATTAAACTCCTAAGCTGAAG
1 ATGAGCTAAGG-TTTAGCTCATGAGCTGAAG
* *
38234284 CTGAGCTAAGGTTTAGCTCATGAGCTGAAT
1 ATGAGCTAAGGTTTAGCTCATGAGCTGAAG
38234314 ATGAGCTA
1 ATGAGCTA
38234322 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
29 1 0.02
30 47 0.94
31 2 0.04
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (30 bp):
ATGAGCTAAGGTTTAGCTCATGAGCTGAAG
Found at i:38234517 original size:158 final size:158
Alignment explanation
Indices: 38234331--38234646 Score: 560
Period size: 158 Copynumber: 2.0 Consensus size: 158
38234321 AGGAGTGAGC
*
38234331 TCGGTTTAGCTCAGGCAAGTTGGATTGAGCTCAAATAAGCTGGATTTGAGCTGGACGAAGCTCGT
1 TCGGTTTAGCTCAGGCAAGATGGATTGAGCTCAAATAAGCTGGATTTGAGCTGGACGAAGCTCGT
38234396 GGAGCTGGAAAAGAGCTTGGATTAGCTTGCCAACATGTCAATGCTCGGCTTGACAGGCTTGTTCG
66 GGAGCTGGAAAAGAGCTTGGATTAGCTTGCCAACATGTCAATGCTCGGCTTGACAGGCTTGTTCG
38234461 ATGAAGTTCGCAGGGCGTGCTCGTATCA
131 ATGAAGTTCGCAGGGCGTGCTCGTATCA
* * *
38234489 TCGGTTTAGCTCAGGCAAGATGGATTGAGCTCGAATAAGCTGGATTTGAGCTGGATGGAGCTCGT
1 TCGGTTTAGCTCAGGCAAGATGGATTGAGCTCAAATAAGCTGGATTTGAGCTGGACGAAGCTCGT
* **
38234554 GGAGCTGGAAACGAGCTTGGATTAGCTTGCCAACATGTCAATGCTCTTCTTGACAGGCTTGTTCG
66 GGAGCTGGAAAAGAGCTTGGATTAGCTTGCCAACATGTCAATGCTCGGCTTGACAGGCTTGTTCG
*
38234619 ATGAAGTTCGCGGGGCGTGCTCGTATCA
131 ATGAAGTTCGCAGGGCGTGCTCGTATCA
38234647 CAAAAGGAAG
Statistics
Matches: 150, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
158 150 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (158 bp):
TCGGTTTAGCTCAGGCAAGATGGATTGAGCTCAAATAAGCTGGATTTGAGCTGGACGAAGCTCGT
GGAGCTGGAAAAGAGCTTGGATTAGCTTGCCAACATGTCAATGCTCGGCTTGACAGGCTTGTTCG
ATGAAGTTCGCAGGGCGTGCTCGTATCA
Found at i:38237245 original size:23 final size:22
Alignment explanation
Indices: 38237193--38237245 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
38237183 TCCACGTCTT
*
38237193 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
38237215 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
38237238 TTTCTTTT
1 TTTCTTTT
38237246 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:38240982 original size:23 final size:22
Alignment explanation
Indices: 38240930--38240982 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
38240920 TCCACGTCTT
*
38240930 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
38240952 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
38240975 TTTCTTTT
1 TTTCTTTT
38240983 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:38247009 original size:4 final size:4
Alignment explanation
Indices: 38247000--38247036 Score: 56
Period size: 4 Copynumber: 9.0 Consensus size: 4
38246990 TTAAACTAAG
*
38247000 TAAA TAAA TAAA TAAA TAAA TAAA TAATA AAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAA-A TAAA TAAA
38247037 ACTTTACAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 27 0.90
5 3 0.10
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:38255526 original size:21 final size:22
Alignment explanation
Indices: 38255502--38255546 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
38255492 TCATATAATT
38255502 ATAACTTAAAAT-AATAACTAA
1 ATAACTTAAAATCAATAACTAA
* *
38255523 ATAACTTAATATCACTAACTAA
1 ATAACTTAAAATCAATAACTAA
38255545 AT
1 AT
38255547 TTGAACACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (22 bp):
ATAACTTAAAATCAATAACTAA
Found at i:38255774 original size:20 final size:20
Alignment explanation
Indices: 38255727--38255774 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
38255717 AGTAAGCTCG
38255727 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
**** *
38255747 AACAAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
38255767 GTTGAGCT
1 GTTGAGCT
38255775 GGACGGTGCT
Statistics
Matches: 19, Mismatches: 9, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:38257270 original size:20 final size:21
Alignment explanation
Indices: 38257235--38257273 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
38257225 CAGCTCGTTG
38257235 AGCTCAATTCAGCTCATTTCC
1 AGCTCAATTCAGCTCATTTCC
*
38257256 AGCTC-ATTGAGCTCATTT
1 AGCTCAATTCAGCTCATTT
38257274 GCTTGTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (21 bp):
AGCTCAATTCAGCTCATTTCC
Found at i:38257680 original size:13 final size:13
Alignment explanation
Indices: 38257662--38257687 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
38257652 TGTGTCCTAA
38257662 TATGAATTAAATT
1 TATGAATTAAATT
38257675 TATGAATTAAATT
1 TATGAATTAAATT
38257688 GCTTTCAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TATGAATTAAATT
Found at i:38258822 original size:11 final size:9
Alignment explanation
Indices: 38258800--38258847 Score: 60
Period size: 11 Copynumber: 4.9 Consensus size: 9
38258790 GTAAGTGATT
38258800 AAAAAAATA
1 AAAAAAATA
38258809 AAAAAAATCGA
1 AAAAAAAT--A
38258820 AAAAAAATA
1 AAAAAAATA
38258829 AAAAAAAGTCA
1 AAAAAAA-T-A
38258840 AAAAAAAT
1 AAAAAAAT
38258848 TCATGGATTG
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
9 16 0.46
10 2 0.06
11 17 0.49
ACGTcount: A:0.81, C:0.04, G:0.04, T:0.10
Consensus pattern (9 bp):
AAAAAAATA
Found at i:38258825 original size:20 final size:20
Alignment explanation
Indices: 38258800--38258847 Score: 80
Period size: 20 Copynumber: 2.4 Consensus size: 20
38258790 GTAAGTGATT
38258800 AAAAAAATAAAAAAAA-TCGA
1 AAAAAAATAAAAAAAAGTC-A
38258820 AAAAAAATAAAAAAAAGTCA
1 AAAAAAATAAAAAAAAGTCA
38258840 AAAAAAAT
1 AAAAAAAT
38258848 TCATGGATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 25 0.93
21 2 0.07
ACGTcount: A:0.81, C:0.04, G:0.04, T:0.10
Consensus pattern (20 bp):
AAAAAAATAAAAAAAAGTCA
Found at i:38259837 original size:6 final size:6
Alignment explanation
Indices: 38259798--38259895 Score: 65
Period size: 6 Copynumber: 16.0 Consensus size: 6
38259788 TAATGAATTC
** * *
38259798 GAAAAA GAAAGT GAAGAA G-AAAA GAAAACA -AAAAA GAAAAA GAAAAC
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAA-A GAAAAA GAAAAA GAAAAA
** * * *
38259845 GAAAAA GTGAGA GAAAAA GAAAAT GAAGAAAA GAAAATT GAAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA G-A-AAAA GAAAA-A GAAAAA GAAAAA
38259896 TATGAAAATG
Statistics
Matches: 68, Mismatches: 18, Indels: 12
0.69 0.18 0.12
Matches are distributed among these distances:
5 5 0.07
6 51 0.75
7 8 0.12
8 4 0.06
ACGTcount: A:0.72, C:0.02, G:0.20, T:0.05
Consensus pattern (6 bp):
GAAAAA
Found at i:38259891 original size:13 final size:12
Alignment explanation
Indices: 38259798--38259894 Score: 74
Period size: 12 Copynumber: 7.9 Consensus size: 12
38259788 TAATGAATTC
*
38259798 GAAAAAGAAAGT
1 GAAAAAGAAAAT
*
38259810 GAAGAAGAAAA-
1 GAAAAAGAAAAT
*
38259821 GAAAACA-AAAAA
1 GAAAA-AGAAAAT
*
38259833 GAAAAAGAAAAC
1 GAAAAAGAAAAT
* *
38259845 GAAAAAGTGAGA-
1 GAAAAAG-AAAAT
38259857 GAAAAAGAAAAT
1 GAAAAAGAAAAT
38259869 GAAGAAAAGAAAATT
1 G-A-AAAAGAAAA-T
38259884 GAAAAAGAAAA
1 GAAAAAGAAAA
38259895 ATATGAAAAT
Statistics
Matches: 69, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
11 11 0.16
12 34 0.49
13 12 0.17
14 10 0.14
15 2 0.03
ACGTcount: A:0.72, C:0.02, G:0.21, T:0.05
Consensus pattern (12 bp):
GAAAAAGAAAAT
Found at i:38259934 original size:18 final size:18
Alignment explanation
Indices: 38259913--38259952 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
38259903 ATGAGATTTC
38259913 AAAAACAAAA-GAGAGTG
1 AAAAACAAAATGAGAGTG
*
38259930 AAAAACAAAATGAGATTG
1 AAAAACAAAATGAGAGTG
38259948 AAAAA
1 AAAAA
38259953 GAAAGAGAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.68, C:0.05, G:0.17, T:0.10
Consensus pattern (18 bp):
AAAAACAAAATGAGAGTG
Found at i:38259966 original size:18 final size:17
Alignment explanation
Indices: 38259920--38259994 Score: 54
Period size: 18 Copynumber: 4.5 Consensus size: 17
38259910 TTCAAAAACA
*
38259920 AAAGAGAG-TGAAAAAC
1 AAAGAGAGTTGAAAAAG
38259936 AAA-ATGAGATTGAAAAAG
1 AAAGA-GAG-TTGAAAAAG
38259954 AAAGAGAGTTTG-AAAAG
1 AAAGAGAG-TTGAAAAAG
*
38259971 AAA-ATGAG-TGAAGAAG
1 AAAGA-GAGTTGAAAAAG
38259987 -AAGAGAGT
1 AAAGAGAGT
38259995 GCTCAAACAC
Statistics
Matches: 48, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
15 8 0.17
16 12 0.25
17 11 0.23
18 16 0.33
19 1 0.02
ACGTcount: A:0.57, C:0.01, G:0.28, T:0.13
Consensus pattern (17 bp):
AAAGAGAGTTGAAAAAG
Found at i:38259968 original size:36 final size:34
Alignment explanation
Indices: 38259900--38259994 Score: 90
Period size: 35 Copynumber: 2.8 Consensus size: 34
38259890 GAAAAATATG
* *
38259900 AAAATGAGATTTCAAAAACAAAAGAGAG-TGAAAAAC
1 AAAATGAGA-TTGAAAAA-GAAAGAGAGTTG-AAAAC
*
38259936 AAAATGAGATTGAAAAAGAAAGAGAGTTTGAAAAG
1 AAAATGAGATTGAAAAAGAAAGAGAG-TTGAAAAC
*
38259971 AAAATGAG--TGAAGAAG-AAGAGAGT
1 AAAATGAGATTGAAAAAGAAAGAGAGT
38259995 GCTCAAACAC
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
31 1 0.02
32 7 0.13
33 7 0.13
34 8 0.15
35 19 0.36
36 11 0.21
ACGTcount: A:0.58, C:0.03, G:0.24, T:0.15
Consensus pattern (34 bp):
AAAATGAGATTGAAAAAGAAAGAGAGTTGAAAAC
Found at i:38259979 original size:17 final size:18
Alignment explanation
Indices: 38259899--38259979 Score: 69
Period size: 17 Copynumber: 4.6 Consensus size: 18
38259889 AGAAAAATAT
*
38259899 GAAAATGAGATTTCAAAAA
1 GAAAATGAG-TTTGAAAAA
* **
38259918 CAAAA-GAGAGTGAAAAA
1 GAAAATGAGTTTGAAAAA
* *
38259935 CAAAATGAGATTGAAAAA
1 GAAAATGAGTTTGAAAAA
38259953 GAAAGA-GAGTTTG-AAAA
1 GAAA-ATGAGTTTGAAAAA
38259970 GAAAATGAGT
1 GAAAATGAGT
38259980 GAAGAAGAAG
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
16 1 0.02
17 23 0.44
18 23 0.44
19 5 0.10
ACGTcount: A:0.58, C:0.04, G:0.22, T:0.16
Consensus pattern (18 bp):
GAAAATGAGTTTGAAAAA
Found at i:38261263 original size:20 final size:21
Alignment explanation
Indices: 38261228--38261266 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
38261218 CAGCTCGTTG
38261228 AGCTCAATTCAGCTCATTTCC
1 AGCTCAATTCAGCTCATTTCC
*
38261249 AGCTC-ATTGAGCTCATTT
1 AGCTCAATTCAGCTCATTT
38261267 GCTTGTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (21 bp):
AGCTCAATTCAGCTCATTTCC
Found at i:38261674 original size:13 final size:13
Alignment explanation
Indices: 38261656--38261681 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
38261646 TGTGTCCTAA
38261656 TATGAATTAAATT
1 TATGAATTAAATT
38261669 TATGAATTAAATT
1 TATGAATTAAATT
38261682 GCTTTCAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TATGAATTAAATT
Found at i:38262805 original size:9 final size:9
Alignment explanation
Indices: 38262791--38262837 Score: 58
Period size: 9 Copynumber: 5.1 Consensus size: 9
38262781 GGAGTAAGTG
38262791 ATTAAAAAA
1 ATTAAAAAA
38262800 ATTAAAAAA
1 ATTAAAAAA
*
38262809 ATCGAAAAAA
1 AT-TAAAAAA
*
38262819 ATAAAAAAA
1 ATTAAAAAA
*
38262828 AGTAAAAAA
1 ATTAAAAAA
38262837 A
1 A
38262838 ATTCGTGGAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
9 25 0.76
10 8 0.24
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (9 bp):
ATTAAAAAA
Found at i:38262809 original size:10 final size:10
Alignment explanation
Indices: 38262794--38262840 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
38262784 GTAAGTGATT
38262794 AAAAAAATT-
1 AAAAAAATTA
**
38262803 AAAAAAATCG
1 AAAAAAATTA
38262813 AAAAAAA-TA
1 AAAAAAATTA
*
38262822 AAAAAAAGTA
1 AAAAAAATTA
38262832 AAAAAAATT
1 AAAAAAATT
38262841 CGTGGATTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
9 15 0.47
10 17 0.53
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (10 bp):
AAAAAAATTA
Done.