Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 143 of 325
Found at i:46183555 original size:27 final size:27
Alignment explanation
Indices: 46183494--46183808 Score: 361
Period size: 27 Copynumber: 11.7 Consensus size: 27
46183484 TTGGGCTGTC
46183494 ACAGGGGTATTTC-AGTAATTCTA-CCT
1 ACAGGGGTATTTCGA-TAATTCTACCCT
* *
46183520 ATAGGGGTATTTCGATATTTCTACCCT
1 ACAGGGGTATTTCGATAATTCTACCCT
* * * *
46183547 ACAAGGGTATTTCGGTATTTCTATCCT
1 ACAGGGGTATTTCGATAATTCTACCCT
* *
46183574 ATAGGGGTATTTCAATAATTCTACCCT
1 ACAGGGGTATTTCGATAATTCTACCCT
* *
46183601 ACAGGGGTATTTCGGTATTTCTACCCT
1 ACAGGGGTATTTCGATAATTCTACCCT
* *
46183628 ACAGGGGTATTTTGGTAATTCTACCCT
1 ACAGGGGTATTTCGATAATTCTACCCT
*
46183655 ACAGGGGTATTTC-AGTAATTTTACCCT
1 ACAGGGGTATTTCGA-TAATTCTACCCT
* * **
46183682 ACAGGGATATTTCAATAATTCTACATT
1 ACAGGGGTATTTCGATAATTCTACCCT
*
46183709 ACAGGGGTATTTCGGTAATTCTACCCT
1 ACAGGGGTATTTCGATAATTCTACCCT
* *
46183736 ACAGGGGTATTTCGGTAATTCTACTCT
1 ACAGGGGTATTTCGATAATTCTACCCT
*
46183763 ACAAGGG-ATTTC-AGTAATTCTACCCT
1 ACAGGGGTATTTCGA-TAATTCTACCCT
* *
46183789 ACAAGGGTATTTCGGTAATT
1 ACAGGGGTATTTCGATAATT
46183809 TTATAAATTG
Statistics
Matches: 247, Mismatches: 35, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
26 42 0.17
27 204 0.83
28 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (27 bp):
ACAGGGGTATTTCGATAATTCTACCCT
Found at i:46183584 original size:54 final size:54
Alignment explanation
Indices: 46183494--46183808 Score: 409
Period size: 54 Copynumber: 5.9 Consensus size: 54
46183484 TTGGGCTGTC
* *
46183494 ACAGGGGTATTTCAGTAATTCTA-CCTATAGGGGTATTTCGATATTTCTACCCT
1 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCT
* * * * * *
46183547 ACAAGGGTATTTCGGTATTTCTATCCTATAGGGGTATTTCAATAATTCTACCCT
1 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCT
* * * *
46183601 ACAGGGGTATTTCGGTATTTCTACCCTACAGGGGTATTTTGGTAATTCTACCCT
1 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCT
* * * **
46183655 ACAGGGGTATTTCAGTAATTTTACCCTACAGGGATATTTCAATAATTCTACATT
1 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCT
* * *
46183709 ACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACTCT
1 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCT
* * *
46183763 ACAAGGG-ATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATT
1 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATT
46183809 TTATAAATTG
Statistics
Matches: 231, Mismatches: 30, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
53 57 0.25
54 174 0.75
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (54 bp):
ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCT
Found at i:46183630 original size:81 final size:81
Alignment explanation
Indices: 46183494--46183808 Score: 427
Period size: 81 Copynumber: 3.9 Consensus size: 81
46183484 TTGGGCTGTC
* * *
46183494 ACAGGGGTATTTCAGTAATTCTA-CCTATAGGGGTATTTCGATATTTCTACCCTACAAGGGTATT
1 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATT
* *
46183558 TCGGTATTTCTATCCT
66 TCGGTAATTCTACCCT
* * ** * *
46183574 ATAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTTCGGTATTTCTACCCTACAGGGGTATT
1 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATT
*
46183639 TTGGTAATTCTACCCT
66 TCGGTAATTCTACCCT
* * ** *
46183655 ACAGGGGTATTTCAGTAATTTTACCCTACAGGGATATTTCAATAATTCTACATTACAGGGGTATT
1 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATT
46183720 TCGGTAATTCTACCCT
66 TCGGTAATTCTACCCT
* * * *
46183736 ACAGGGGTATTTCGGTAATTCTACTCTACAAGGG-ATTTCAGTAATTCTACCCTACAAGGGTATT
1 ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATT
46183800 TCGGTAATT
66 TCGGTAATT
46183809 TTATAAATTG
Statistics
Matches: 207, Mismatches: 27, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
80 56 0.27
81 151 0.73
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.37
Consensus pattern (81 bp):
ACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATT
TCGGTAATTCTACCCT
Found at i:46183822 original size:27 final size:27
Alignment explanation
Indices: 46183792--46184022 Score: 204
Period size: 27 Copynumber: 8.7 Consensus size: 27
46183782 CTACCCTACA
* *
46183792 AGGGTATTTCGGTAATTTTATAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
46183819 AGGGTATTTCAGTAATTTTAC-AATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
*
46183845 ACGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
46183872 AGGATATTTGGGTAATTTTATAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
46183899 GGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTACAAATCG
**
46183926 AGGGTATTTTAGTAATTTTAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* ** * *
46183952 ACGACATTTCGGTAATTTTATAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
46183979 -GGTGTACTTT-GGTAATTTTACAACTAG
1 AGG-GTA-TTTCGGTAATTTTACAAATCG
*
46184006 -GGGTATTTCAGTAATTT
1 AGGGTATTTCGGTAATTT
46184023 GGTAAACTAA
Statistics
Matches: 162, Mismatches: 35, Indels: 15
0.76 0.17 0.07
Matches are distributed among these distances:
25 3 0.02
26 55 0.34
27 98 0.60
28 6 0.04
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:46183951 original size:80 final size:80
Alignment explanation
Indices: 46183796--46184022 Score: 289
Period size: 80 Copynumber: 2.8 Consensus size: 80
46183786 CCTACAAGGG
** * * * * *
46183796 TATTTCGGTAATTTTATAAATTGAGGGTA-TTTCAGTAATTTTACAATCAACGGTATTTCGGTAA
1 TATTTCGGTAATTTTATAAACCGGGGGTACTTT-GGTAATTTTACAATCGAGGGTATTTCAGTAA
*
46183860 TTTTACAAATCGAGGA
65 TTTTACAAATCGACGA
* *
46183876 TATTTGGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAGTAA
1 TATTTCGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAA-TCGAGGGTATTTCAGTAA
46183941 TTTTAC-AATCGACGA
65 TTTTACAAATCGACGA
* * *
46183956 CATTTCGGTAATTTTATAAACCGGGTGTACTTTGGTAATTTTACAA-CTAGGGGTATTTCAGTAA
1 TATTTCGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAATCGA-GGGTATTTCAGTAA
46184020 TTT
65 TTT
46184023 GGTAAACTAA
Statistics
Matches: 129, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
78 2 0.02
79 16 0.12
80 88 0.68
81 23 0.18
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.40
Consensus pattern (80 bp):
TATTTCGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTACAATCGAGGGTATTTCAGTAAT
TTTACAAATCGACGA
Found at i:46183993 original size:107 final size:107
Alignment explanation
Indices: 46183793--46184022 Score: 279
Period size: 107 Copynumber: 2.2 Consensus size: 107
46183783 TACCCTACAA
* * **
46183793 GGGTATTTCGGTAATTTTATAAATTGAGGGTATTTCAGTAATTTTACAATCAACGGTATTTCGGT
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGACATTTCGGT
*
46183858 AATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACCGG
66 AATTTTACAAACCGAGGATATTTGGGTAATTTTATAAACCGG
* * *
46183900 GGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAATCGACGACATTTCGG
1 GGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGACATTTCGG
* * * **
46183964 TAATTTTATAAACCG-GGTGTACTTT-GGTAATTTTA-CAACTAG
65 TAATTTTACAAACCGAGG-ATA-TTTGGGTAATTTTATAAACCGG
*
46184006 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
46184023 GGTAAACTAA
Statistics
Matches: 105, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
105 3 0.03
106 18 0.17
107 78 0.74
108 6 0.06
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (107 bp):
GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATCAACGACATTTCGGT
AATTTTACAAACCGAGGATATTTGGGTAATTTTATAAACCGG
Found at i:46184014 original size:53 final size:52
Alignment explanation
Indices: 46183793--46184022 Score: 189
Period size: 53 Copynumber: 4.3 Consensus size: 52
46183783 TACCCTACAA
* * *
46183793 GGGTATTTCGGTAATTTTATAAATTGAGGGTATTTCAGTAATTTTACAATCAA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAT-AG
* * ** *
46183846 CGGTATTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAA-ACCGG
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATA---G
* * *
46183900 GGGTACTTT-GGTAATTTTACAAGTCGAGGGTATTTTAGTAATTTTACAATCG
1 GGGTA-TTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATAG
* ** * * *
46183952 ACGACATTTCGGTAATTTTATAAACCG-GGTGTACTTT-GGTAATTTTACAACTAG
1 -GGGTATTTCGGTAATTTTACAAATCGAGG-GTA-TTTCAGTAATTTTACAA-TAG
*
46184006 GGGTATTTCAGTAATTT
1 GGGTATTTCGGTAATTT
46184023 GGTAAACTAA
Statistics
Matches: 140, Mismatches: 27, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
51 1 0.01
52 6 0.04
53 86 0.61
54 44 0.31
55 3 0.02
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (52 bp):
GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAATAG
Found at i:46185033 original size:31 final size:31
Alignment explanation
Indices: 46184995--46185063 Score: 122
Period size: 31 Copynumber: 2.3 Consensus size: 31
46184985 ACCAAATTTT
46184995 GTCTAAACAAGAAATTGAAATAATGTTCATA
1 GTCTAAACAAGAAATTGAAATAATGTTCATA
*
46185026 GTCTAAACAAGAAATTGAAATAATGTTCTTA
1 GTCTAAACAAGAAATTGAAATAATGTTCATA
46185057 GTC-AAAC
1 GTCTAAAC
46185064 TGGGCACAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 4 0.11
31 33 0.89
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.29
Consensus pattern (31 bp):
GTCTAAACAAGAAATTGAAATAATGTTCATA
Found at i:46193694 original size:13 final size:13
Alignment explanation
Indices: 46193676--46193701 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46193666 GATTATCAGC
46193676 TACTTGATTTTCA
1 TACTTGATTTTCA
46193689 TACTTGATTTTCA
1 TACTTGATTTTCA
46193702 ACTCCCCTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (13 bp):
TACTTGATTTTCA
Found at i:46203982 original size:22 final size:22
Alignment explanation
Indices: 46203950--46203997 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
46203940 ACACGGCCAA
*
46203950 GGCCATCATTTTGGGCTTATTG
1 GGCCATCATTTTGGGCTTAGTG
* *
46203972 GGCCATTATTTTGGGGTTAGTG
1 GGCCATCATTTTGGGCTTAGTG
46203994 GGCC
1 GGCC
46203998 CACATGGGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.12, C:0.17, G:0.33, T:0.38
Consensus pattern (22 bp):
GGCCATCATTTTGGGCTTAGTG
Found at i:46206292 original size:39 final size:39
Alignment explanation
Indices: 46206228--46206507 Score: 309
Period size: 39 Copynumber: 7.2 Consensus size: 39
46206218 AAGCACATAA
* * *
46206228 GTGCAATCAAGGGTACCGAAGTACAACAGGGGCACGTAT
1 GTGCGATCAGGGGTACCAAAGTACAACAGGGGCACGTAT
* *
46206267 GTTCGATCAGGGGTACCAAAGTACAATA-GGGCACGTAT
1 GTGCGATCAGGGGTACCAAAGTACAACAGGGGCACGTAT
** *
46206305 GTATGATCAGGGGTA--ATAAGTGCAACAGGGGCACGTAT
1 GTGCGATCAGGGGTACCA-AAGTACAACAGGGGCACGTAT
*
46206343 GTGCGATCAGGGGTACCAAAGTACAACCA-GGGCAAGTAT
1 GTGCGATCAGGGGTACCAAAGTACAA-CAGGGGCACGTAT
* * * ** *
46206382 GTGCAATCAAGGGTACCGAAGTA-AACCAGGGATATGTAT
1 GTGCGATCAGGGGTACCAAAGTACAA-CAGGGGCACGTAT
46206421 GTGCGATCAGGGGTACCAAAGTACAACAGGGGCACGTAT
1 GTGCGATCAGGGGTACCAAAGTACAACAGGGGCACGTAT
* *** *
46206460 GTGCGATCAGGGATACTGTAGTACAACAGGGACACGTAT
1 GTGCGATCAGGGGTACCAAAGTACAACAGGGGCACGTAT
*
46206499 GTGCAATCA
1 GTGCGATCA
46206508 AGTATAATTA
Statistics
Matches: 203, Mismatches: 31, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
36 1 0.00
37 8 0.04
38 51 0.25
39 138 0.68
40 5 0.02
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.19
Consensus pattern (39 bp):
GTGCGATCAGGGGTACCAAAGTACAACAGGGGCACGTAT
Found at i:46206434 original size:78 final size:77
Alignment explanation
Indices: 46206228--46206507 Score: 341
Period size: 78 Copynumber: 3.6 Consensus size: 77
46206218 AAGCACATAA
* *
46206228 GTGCAATCAAGGGTACCGAAGTACAACAGGGGCACGTATGTTCGATCAGGGGTACCAAAGTACAA
1 GTGCAATCAAGGGTACCGAAGTACAACAGGGACACGTATGTGCGATCAGGGGTACCAAAGTACAA
*
46206293 TAGGGCACGTAT
66 CAGGGCACGTAT
*** * ** * *
46206305 GTATGATCAGGGGTA-ATAAGTGCAACAGGGGCACGTATGTGCGATCAGGGGTACCAAAGTACAA
1 GTGCAATCAAGGGTACCGAAGTACAACAGGGACACGTATGTGCGATCAGGGGTACCAAAGTACAA
*
46206369 CCAGGGCAAGTAT
66 -CAGGGCACGTAT
* *
46206382 GTGCAATCAAGGGTACCGAAGTA-AACCAGGGATATGTATGTGCGATCAGGGGTACCAAAGTACA
1 GTGCAATCAAGGGTACCGAAGTACAA-CAGGGACACGTATGTGCGATCAGGGGTACCAAAGTACA
46206446 ACAGGGGCACGTAT
65 ACA-GGGCACGTAT
* * * *
46206460 GTGCGATC-AGGGATACTGTAGTACAACAGGGACACGTATGTGCAATCA
1 GTGCAATCAAGGG-TACCGAAGTACAACAGGGACACGTATGTGCGATCA
46206508 AGTATAATTA
Statistics
Matches: 170, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
76 45 0.26
77 40 0.24
78 83 0.49
79 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.19
Consensus pattern (77 bp):
GTGCAATCAAGGGTACCGAAGTACAACAGGGACACGTATGTGCGATCAGGGGTACCAAAGTACAA
CAGGGCACGTAT
Found at i:46221986 original size:51 final size:50
Alignment explanation
Indices: 46221918--46222075 Score: 235
Period size: 51 Copynumber: 3.1 Consensus size: 50
46221908 ATCACATTTA
46221918 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTG
* *
46221969 TGACTTGTCACTGATCAGATAAGTGTAGCTGAGACTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAG-CTACCACTTATCACTTG
* * * *
46222020 TCACTTGTCACTAATCAAATAAGTGTAGGTGAGGCTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTG
46222071 TCACT
1 TCACT
46222076 GATCAGAAGT
Statistics
Matches: 97, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
50 2 0.02
51 94 0.97
52 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (50 bp):
TCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTG
Found at i:46223796 original size:37 final size:37
Alignment explanation
Indices: 46223746--46223861 Score: 196
Period size: 37 Copynumber: 3.1 Consensus size: 37
46223736 TTATTACGAA
* * * *
46223746 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
46223783 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
46223820 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
46223857 GTCTT
1 GTCTT
46223862 TAGAGCTCGG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 75 1.00
ACGTcount: A:0.26, C:0.33, G:0.19, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
Found at i:46224058 original size:47 final size:47
Alignment explanation
Indices: 46223980--46224392 Score: 621
Period size: 47 Copynumber: 8.7 Consensus size: 47
46223970 CCCTTCGGGA
* * * * ** * *
46223980 CTTATCACATTTATACACTTCCACATCCATCACGTTAGCCACTCGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
46224027 CCTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
46224074 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
46224121 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
*
46224168 CTTATCACATGTATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
46224215 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
46224262 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
46224309 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATG--TATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
46224358 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATGTATACACT-TTCACATTCATCACAT
46224393 AGAATCCTAA
Statistics
Matches: 342, Mismatches: 21, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 296 0.87
49 45 0.13
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:46233528 original size:15 final size:16
Alignment explanation
Indices: 46233510--46233543 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
46233500 AAATTAAATT
*
46233510 AATTAA-CTAGATGCA
1 AATTAACCTAAATGCA
46233525 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
46233541 AAT
1 AAT
46233544 GAGATGAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.15, G:0.09, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:46235279 original size:20 final size:20
Alignment explanation
Indices: 46235254--46235308 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
46235244 TTTGACATGG
*
46235254 CCTTTGTGGCATTCTACTAA
1 CCTTTGTGGCGTTCTACTAA
46235274 CCTTTGTGGCGTTCTACTAA
1 CCTTTGTGGCGTTCTACTAA
46235294 CCTTTGTGGCGTTCT
1 CCTTTGTGGCGTTCT
46235309 TTATAAATTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.13, C:0.25, G:0.20, T:0.42
Consensus pattern (20 bp):
CCTTTGTGGCGTTCTACTAA
Found at i:46237796 original size:81 final size:81
Alignment explanation
Indices: 46237684--46237841 Score: 289
Period size: 81 Copynumber: 2.0 Consensus size: 81
46237674 TCGAACCTAG
46237684 TCTTTTCAAAGGTATTTGATTTTTGATCTTATTACTCCAAAGAAGTTTAACGAGACTGTTATTAG
1 TCTTTTCAAAGGTATTTGATTTTTGATCTTATTACTCCAAAGAAGTTTAACGAGACTGTTATTAG
46237749 TTTGTCCCAAACTTAC
66 TTTGTCCCAAACTTAC
* *
46237765 TCTTTTCAAAGGTATTTGATTTTTGATCTTATTACTCTAAAGAAGTTTAATGAGACTGTTATTAG
1 TCTTTTCAAAGGTATTTGATTTTTGATCTTATTACTCCAAAGAAGTTTAACGAGACTGTTATTAG
*
46237830 TTTTTCCCAAAC
66 TTTGTCCCAAAC
46237842 AAATCAAAAC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (81 bp):
TCTTTTCAAAGGTATTTGATTTTTGATCTTATTACTCCAAAGAAGTTTAACGAGACTGTTATTAG
TTTGTCCCAAACTTAC
Found at i:46239284 original size:13 final size:13
Alignment explanation
Indices: 46239266--46239291 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46239256 TTTTTCATGC
46239266 CAACTCTTAAATT
1 CAACTCTTAAATT
46239279 CAACTCTTAAATT
1 CAACTCTTAAATT
46239292 AATCAGCACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (13 bp):
CAACTCTTAAATT
Found at i:46243257 original size:42 final size:42
Alignment explanation
Indices: 46243205--46243289 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
46243195 ACTAATATAG
46243205 ATTAGCTATCAATAAGGCAAAAAAGAAAAAGTAACATAGATT
1 ATTAGCTATCAATAAGGCAAAAAAGAAAAAGTAACATAGATT
46243247 ATTAGCTATCAATAAGGCAAAAAAGAAAAAGTAACATAGATT
1 ATTAGCTATCAATAAGGCAAAAAAGAAAAAGTAACATAGATT
46243289 A
1 A
46243290 GTTCCTTTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.55, C:0.09, G:0.14, T:0.21
Consensus pattern (42 bp):
ATTAGCTATCAATAAGGCAAAAAAGAAAAAGTAACATAGATT
Found at i:46246851 original size:40 final size:40
Alignment explanation
Indices: 46246794--46246877 Score: 132
Period size: 40 Copynumber: 2.1 Consensus size: 40
46246784 TCAAGATCAG
* *
46246794 TTGGAGTGTAACACTCTACACTCGACTTGATCGTTAGGTC
1 TTGGAGTGTAACACTCTACACCCGACTTGATCGTCAGGTC
* *
46246834 TTGGAGTGTAACTCTCTACACCCGACTTGATCGTCGGGTC
1 TTGGAGTGTAACACTCTACACCCGACTTGATCGTCAGGTC
46246874 TTGG
1 TTGG
46246878 TATGGAGTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.19, C:0.24, G:0.25, T:0.32
Consensus pattern (40 bp):
TTGGAGTGTAACACTCTACACCCGACTTGATCGTCAGGTC
Found at i:46259320 original size:58 final size:57
Alignment explanation
Indices: 46259251--46259371 Score: 152
Period size: 57 Copynumber: 2.1 Consensus size: 57
46259241 GAAAAGGTGA
* * **
46259251 AAAATGGAGAAATAAAAAAAATTTGGAAATGATTATGGTTTTCTCCAAATTGAAAATG
1 AAAATGGAGAAAT-AAAAAAATTTGGAAATAAATATGGTTTTCTCCAAAACGAAAATG
** ** *
46259309 AAAATGGAGAAATGGAATCATTTGGAAATAAATGTGGTTTTCTCCAAAACGAAAATG
1 AAAATGGAGAAATAAAAAAATTTGGAAATAAATATGGTTTTCTCCAAAACGAAAATG
46259366 AAAATG
1 AAAATG
46259372 ACTTAGAAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
57 41 0.76
58 13 0.24
ACGTcount: A:0.47, C:0.07, G:0.19, T:0.27
Consensus pattern (57 bp):
AAAATGGAGAAATAAAAAAATTTGGAAATAAATATGGTTTTCTCCAAAACGAAAATG
Found at i:46260911 original size:70 final size:69
Alignment explanation
Indices: 46260799--46260938 Score: 226
Period size: 70 Copynumber: 2.0 Consensus size: 69
46260789 AAATTTCAAG
* *
46260799 CTTAAACCAAAATTTTTTTCATAAAAACATTCATTTCACAACATTCTAATGTTGTTTAAAACAAA
1 CTTAAACCAAAATTTTTTTCATAAAAACATTCATTTCACAACATTATAATATTGTTTAAAACAAA
46260864 TCGA
66 TCGA
* * *
46260868 CTTAAACCAAAATTTTCTTTTATAAAAGCATTCATTTCACAACATTATAATATTGTTTAAAATAA
1 CTTAAACCAAAATTTT-TTTCATAAAAACATTCATTTCACAACATTATAATATTGTTTAAAACAA
46260933 ATCGA
65 ATCGA
46260938 C
1 C
46260939 CAAGTTTGGA
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
69 16 0.25
70 49 0.75
ACGTcount: A:0.42, C:0.16, G:0.04, T:0.37
Consensus pattern (69 bp):
CTTAAACCAAAATTTTTTTCATAAAAACATTCATTTCACAACATTATAATATTGTTTAAAACAAA
TCGA
Found at i:46263116 original size:21 final size:21
Alignment explanation
Indices: 46263066--46263117 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 21
46263056 CATCTTGGCA
*
46263066 CACAAAGTGCA-A-CCTAGCG
1 CACAAAGAGCATATCCTAGCG
46263085 CAC-AA-AGCATATCCTAGCG
1 CACAAAGAGCATATCCTAGCG
46263104 CACAAAGAGCATAT
1 CACAAAGAGCATAT
46263118 TGGTGCATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 3 0.11
18 3 0.11
19 13 0.46
20 2 0.07
21 7 0.25
ACGTcount: A:0.40, C:0.29, G:0.17, T:0.13
Consensus pattern (21 bp):
CACAAAGAGCATATCCTAGCG
Found at i:46265530 original size:42 final size:43
Alignment explanation
Indices: 46265422--46265530 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 43
46265412 AACATATACA
*
46265422 ATGCCAACGTCCCAGACATGGTCTTACATGTAATCAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAACATCG
* * * * *
46265465 ATGCCACTGTCCCAAACAGGGTCTTACATG-AATTCAGATAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAA-TCAAACATCG
46265507 ATGCCAATGTCCCAGACATGGTCT
1 ATGCCAATGTCCCAGACATGGTCT
46265531 CACACGCAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
42 24 0.43
43 32 0.57
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAACATCG
Found at i:46266073 original size:29 final size:30
Alignment explanation
Indices: 46266023--46266079 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
46266013 AAAAGTCCAT
* *
46266023 AAATTTCATTTATTTCACATTTAGTCCCTCA
1 AAATATCATTTATTACACATTTAG-CCCTCA
46266054 AAATATCATTT-TTACA-ATTTAGCCCT
1 AAATATCATTTATTACACATTTAGCCCT
46266080 TTTTACTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.17
29 6 0.25
30 4 0.17
31 10 0.42
ACGTcount: A:0.32, C:0.21, G:0.04, T:0.44
Consensus pattern (30 bp):
AAATATCATTTATTACACATTTAGCCCTCA
Found at i:46268228 original size:6 final size:6
Alignment explanation
Indices: 46268219--46268383 Score: 54
Period size: 6 Copynumber: 25.7 Consensus size: 6
46268209 TAAGTCTAAG
* *
46268219 AAAATA AAAATAA AACAACTA AAAGA-A AAATTAA AAAATA AAAATA AAAAGA
1 AAAATA AAAAT-A AA-AA-TA AAA-ATA AAAAT-A AAAATA AAAATA AAAATA
46268271 ATAACACTAA GAAAATGGA TAAAAGTA AAAAT- AAAAT- -AAATA AAAATA
1 A-AA-A-T-A -AAAAT--A -AAAA-TA AAAATA AAAATA AAAATA AAAATA
* * * * *
46268319 ATAGTA AGTAAATA AAAATA AGGAATA AAAATA ATAAT- AAAATA ATAATA
1 AAAATA A--AAATA AAAATA A-AAATA AAAATA AAAATA AAAATA AAAATA
* *
46268369 ATAA-A AAAAGA AAAA
1 AAAATA AAAATA AAAA
46268384 GGGTAAACAG
Statistics
Matches: 123, Mismatches: 16, Indels: 40
0.69 0.09 0.22
Matches are distributed among these distances:
4 4 0.03
5 13 0.11
6 61 0.50
7 20 0.16
8 13 0.11
9 7 0.06
10 4 0.03
11 1 0.01
ACGTcount: A:0.73, C:0.02, G:0.07, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:46268242 original size:20 final size:20
Alignment explanation
Indices: 46268219--46268268 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
46268209 TAAGTCTAAG
46268219 AAAATAAAAA-TAAAACAACT-
1 AAAATAAAAATTAAAA-AA-TA
*
46268239 AAAAGAAAAATTAAAAAATA
1 AAAATAAAAATTAAAAAATA
46268259 AAAATAAAAA
1 AAAATAAAAA
46268269 GAATAACACT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 20 0.77
21 5 0.19
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.14
Consensus pattern (20 bp):
AAAATAAAAATTAAAAAATA
Found at i:46268273 original size:15 final size:14
Alignment explanation
Indices: 46268239--46268383 Score: 53
Period size: 14 Copynumber: 9.7 Consensus size: 14
46268229 TAAAACAACT
* *
46268239 AAAAGAAAAATTAA
1 AAAATAAAAATAAA
46268253 AAAATAAAAATAAA
1 AAAATAAAAATAAA
* *
46268267 AAGAATAACACTAAGA
1 AA-AATAAAAATAA-A
*
46268283 AAATGGATAAAAGTAAA
1 AAA---ATAAAAATAAA
46268300 AATAA-AATAAATAAA
1 AA-AATAA-AAATAAA
* *
46268315 AATAATAGTAAGTAAATA
1 AA-AATA-AAAAT-AA-A
*
46268333 AAAATAAGGAAT--A
1 AAAATAA-AAATAAA
*
46268346 AAAATAATAATAAA
1 AAAATAAAAATAAA
* *
46268360 ATAATAATAATAAA
1 AAAATAAAAATAAA
*
46268374 AAAAGAAAAA
1 AAAATAAAAA
46268384 GGGTAAACAG
Statistics
Matches: 100, Mismatches: 17, Indels: 28
0.69 0.12 0.19
Matches are distributed among these distances:
12 3 0.03
13 8 0.08
14 37 0.37
15 22 0.22
16 7 0.07
17 11 0.11
18 12 0.12
ACGTcount: A:0.73, C:0.01, G:0.08, T:0.18
Consensus pattern (14 bp):
AAAATAAAAATAAA
Found at i:46268339 original size:30 final size:33
Alignment explanation
Indices: 46268293--46268354 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
46268283 AAATGGATAA
46268293 AAGTAAAAATAAAAT-A-AATAAAAATAATAGT
1 AAGTAAAAATAAAATAAGAATAAAAATAATAGT
*
46268324 AAGTAAATA-AAAATAAGGAATAAAAATAATA
1 AAGTAAAAATAAAATAA-GAATAAAAATAATA
46268355 ATAAAATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 5 0.19
31 9 0.33
33 13 0.48
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (33 bp):
AAGTAAAAATAAAATAAGAATAAAAATAATAGT
Found at i:46268356 original size:3 final size:3
Alignment explanation
Indices: 46268300--46268372 Score: 51
Period size: 3 Copynumber: 23.7 Consensus size: 3
46268290 TAAAAGTAAA
* * * * *
46268300 AAT AA- AAT AAAT AAA AAT AAT AGT AAGT AAAT AAA AAT AAGG AAT AAA
1 AAT AAT AAT -AAT AAT AAT AAT AAT AA-T -AAT AAT AAT AA-T AAT AAT
46268348 AAT AAT AAT AA- AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
46268373 AAAAAGAAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
2 4 0.07
3 41 0.76
4 7 0.13
5 2 0.04
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.23
Consensus pattern (3 bp):
AAT
Found at i:46268365 original size:14 final size:14
Alignment explanation
Indices: 46268298--46268374 Score: 59
Period size: 14 Copynumber: 5.3 Consensus size: 14
46268288 GATAAAAGTA
46268298 AAAATAA-AATAAAT
1 AAAATAATAAT-AAT
*
46268312 AAAAATAATAGTAAGT
1 -AAAATAATAATAA-T
* *
46268328 -AAATAAAAATAAGG
1 AAAATAATAATAA-T
*
46268342 AATAAAAATAATAAT
1 AA-AATAATAATAAT
46268357 AAAATAATAATAAT
1 AAAATAATAATAAT
46268371 AAAA
1 AAAA
46268375 AAAGAAAAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
14 26 0.52
15 12 0.24
16 12 0.24
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (14 bp):
AAAATAATAATAAT
Found at i:46268366 original size:33 final size:33
Alignment explanation
Indices: 46268309--46268372 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
46268299 AAATAAAATA
* *
46268309 AATAAAAATAATAGTAAGTAAATAAAAATAAGG
1 AATAAAAATAATAATAAATAAATAAAAATAAGG
*
46268342 AATAAAAATAATAATAAA-ATAATAATAATAA
1 AATAAAAATAATAATAAATA-AATAAAAATAA
46268373 AAAAAGAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 1 0.04
33 26 0.96
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.23
Consensus pattern (33 bp):
AATAAAAATAATAATAAATAAATAAAAATAAGG
Found at i:46271150 original size:50 final size:51
Alignment explanation
Indices: 46271073--46271201 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
46271063 GACCATGGCA
46271073 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAA-TG
* *
46271124 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
* *
46271174 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCAGCTAC
46271202 CTGATCAGTG
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 44 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
Found at i:46271215 original size:31 final size:31
Alignment explanation
Indices: 46271177--46271387 Score: 325
Period size: 31 Copynumber: 6.8 Consensus size: 31
46271167 ACAAATGACA
*
46271177 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
46271208 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
46271239 AGTGAAAAGTGGTAG-TTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
46271270 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
46271301 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
46271332 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
46271363 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
46271388 AAGTGACAAG
Statistics
Matches: 169, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
30 2 0.01
31 166 0.98
32 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:46271482 original size:47 final size:46
Alignment explanation
Indices: 46271412--46271577 Score: 180
Period size: 47 Copynumber: 3.7 Consensus size: 46
46271402 AAGTGATTTC
* *
46271412 CGTATAAGACCATATCTGGGATATGGCATCAGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* *
46271458 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * *
46271505 CGTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATG-ATA
* * * *
46271547 TGTGTAAGACCATAGCTGGGCTATGGCATCA
1 CGTATAAGACCATATCTGGGATATGGCATCA
46271578 TTATGTGAAG
Statistics
Matches: 107, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
41 7 0.07
42 31 0.29
46 27 0.25
47 42 0.39
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
Found at i:46271564 original size:42 final size:43
Alignment explanation
Indices: 46271506--46271620 Score: 171
Period size: 42 Copynumber: 2.7 Consensus size: 43
46271496 TATGTGATTC
*
46271506 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
*
46271548 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
46271590 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
46271621 GAAAAAAAAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 1 0.02
42 64 0.97
43 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:46275867 original size:18 final size:16
Alignment explanation
Indices: 46275846--46275884 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
46275836 ATTAGAATGT
46275846 AAAAATTAAACTAAAAAC
1 AAAAATT-AA-TAAAAAC
*
46275864 AAAAATTAATAAAAAT
1 AAAAATTAATAAAAAC
46275880 AAAAA
1 AAAAA
46275885 ATGGCTAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 2 0.10
18 7 0.35
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAATTAATAAAAAC
Found at i:46275884 original size:17 final size:18
Alignment explanation
Indices: 46275846--46275886 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
46275836 ATTAGAATGT
*
46275846 AAAAATTAAACTAAAAAC
1 AAAAATTAAACTAAAAAA
46275864 AAAAATT-AA-TAAAAATA
1 AAAAATTAAACTAAAAA-A
46275881 AAAAAT
1 AAAAAT
46275887 GGCTAAGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 6 0.29
17 8 0.38
18 7 0.33
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATTAAACTAAAAAA
Found at i:46277506 original size:29 final size:30
Alignment explanation
Indices: 46277473--46277529 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
46277463 TTTTCGAATA
* *
46277473 TAGGGG-AAAATGGTCTTTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
46277502 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
46277530 ATGTGAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 6 0.24
30 19 0.76
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:46278124 original size:50 final size:45
Alignment explanation
Indices: 46277873--46278141 Score: 172
Period size: 46 Copynumber: 5.8 Consensus size: 45
46277863 CATGTGAGCT
* *
46277873 AGTGTAAGA-CATGTCTGGGACATGAATCGGCCAC-ATTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGG-CACGA-TATGA-AGCC
* * * * * * *
46277919 AGTGTCAGACCATGTCTGGGACATGGCATTGGTATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCA-CGATATGA-AGCC
** * * *
46277967 AGTGTAAGA-CATGTCTGGGACATGCATTAGC-CTCAGGACGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCAC-GA-TATG-AAGCC
* * *
46278013 AGTGTAAGA-CATGTCTGGGACATGCATAGGCTACGATATG-TGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGC-ACGATATGAAGCC
*
46278057 AGCGTAAGACCATGTCTGGGACATGGCATCGGCACGAATATGGGAAAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCACG-ATAT--G-AAGCC
* *
46278107 AGTGTAAGACCATGTCTGGGATATAGCATCAGCAC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCAC
46278142 CTTACCCATG
Statistics
Matches: 179, Mismatches: 28, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
44 10 0.06
45 18 0.10
46 63 0.35
47 31 0.17
48 23 0.13
49 1 0.01
50 33 0.18
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCACGATATGAAGCC
Found at i:46279764 original size:28 final size:28
Alignment explanation
Indices: 46279701--46279798 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
46279691 ATATTAAGTC
*
46279701 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
46279728 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
46279756 CGCACACTTAGTGCTGA-ACAATTTAAACC
1 CGCACACTTAGTGCT-ATATAA-TCAAACT
46279785 CGCACACTTAGTGC
1 CGCACACTTAGTGC
46279799 CAATCTCATG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.34
28 22 0.34
29 20 0.31
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:46282445 original size:23 final size:21
Alignment explanation
Indices: 46282395--46282444 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
46282385 TGTGGGACAC
46282395 GGGTGTGTTACTCTTCCACAT
1 GGGTGTGTTACTCTTCCACAT
46282416 GGGTGTGTTAAC-CTTCCACAT
1 GGGTGTGTT-ACTCTTCCACAT
*
46282437 GGGCGTGT
1 GGGTGTGT
46282445 GCCCTGTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.14, C:0.22, G:0.30, T:0.34
Consensus pattern (21 bp):
GGGTGTGTTACTCTTCCACAT
Found at i:46289112 original size:43 final size:44
Alignment explanation
Indices: 46289041--46289175 Score: 175
Period size: 43 Copynumber: 3.1 Consensus size: 44
46289031 TATCGAAATG
*
46289041 TGATATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * * * *
46289085 TGATA-TCGGGTTTTGAGCTTAGTAGGCTATGATGCTGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
*
46289128 T-ATTATTCGAGGCTTTGAGCCTAGCAGGCTATAATGTCGGTGAAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
46289173 TGA
1 TGA
46289176 AATGTTATGT
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
42 1 0.01
43 35 0.47
44 8 0.11
45 30 0.40
46 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.30
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:46289669 original size:38 final size:38
Alignment explanation
Indices: 46289472--46289680 Score: 267
Period size: 38 Copynumber: 5.5 Consensus size: 38
46289462 GTAGGCTATA
* *
46289472 TGCTGGAATTATATCCGGGTTAAATCCTGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
** * *
46289510 TATTGGTAATATATCCAGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
*
46289548 TGCTGGT-TATATATCCGGGTTAAATCCCGCAAGCTTCG
1 TGCTGGTAT-TATATCCGGGTTAAATCCCGCAGGCTTCG
* * *
46289586 TGCTGGTAATATATCCGAGTTAATTCCCGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
* *
46289624 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCCTAG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
** *
46289662 TAATGGTATTATATTCGGG
1 TGCTGGTATTATATCCGGG
46289681 CCTTTGAGCC
Statistics
Matches: 146, Mismatches: 23, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
38 146 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:46289723 original size:45 final size:45
Alignment explanation
Indices: 46289673--46289798 Score: 164
Period size: 45 Copynumber: 2.8 Consensus size: 45
46289663 AATGGTATTA
* *
46289673 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGCTGAGACAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGCTGAGACAC
* * * * *
46289718 TATTCGGGACTTTGGGCCTACCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGCTGAGACAC
*
46289763 TATTC-AGCCTTTCGAGCCTAGCAGGCTATAATGCCG
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCG
46289799 ATGAAATGAT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
44 5 0.07
45 64 0.93
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGCTGAGACAC
Found at i:46297982 original size:38 final size:38
Alignment explanation
Indices: 46297931--46298313 Score: 633
Period size: 38 Copynumber: 10.1 Consensus size: 38
46297921 ATATTTGATA
*
46297931 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
46297969 TATATCCAGGTTAAATCCCGCAGGCTTCGTGCTAGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
46298007 TATATCCGGGTTAAAT-CCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
46298044 TATATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
46298082 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
46298120 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
46298158 TATATTCGGGTTAAATCCCGCAGGCTTTGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
46298196 TATATCCGGGTTAAATCCCGCAGGCTTCGTACTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
46298234 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
46298272 TATATCTGGGTTAAATCCCGTAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
46298310 TATA
1 TATA
46298314 CTCGGGCCTT
Statistics
Matches: 321, Mismatches: 23, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
37 34 0.11
38 287 0.89
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.32
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:46299831 original size:45 final size:44
Alignment explanation
Indices: 46299715--46299849 Score: 186
Period size: 43 Copynumber: 3.1 Consensus size: 44
46299705 TATCGAAATG
46299715 TGATATTCGGGCTTCTG-GCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTT-TGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * * *
46299759 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCTGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
46299802 T-ATTATTCGAGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
46299847 TGA
1 TGA
46299850 AATGTTATGT
Statistics
Matches: 78, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
42 3 0.04
43 34 0.44
44 8 0.10
45 32 0.41
46 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:46300180 original size:38 final size:38
Alignment explanation
Indices: 46300119--46300293 Score: 228
Period size: 38 Copynumber: 4.6 Consensus size: 38
46300109 ATGATGTTTG
* ** *
46300119 TATCCGGCTTAAAGACCGTAGGCTAT-ATGCTGG-AATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TCATGCTGGTAA-TA
46300157 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
* *
46300195 TATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
* * * *
46300233 TATCCGGGTTAATTCCCGCAGGCTTCGTGATGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
46300271 TATCCGGGTTAAATCCCGCAGGC
1 TATCCGGGTTAAATCCCGCAGGC
46300294 CTAGTGATGG
Statistics
Matches: 124, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
37 1 0.01
38 121 0.98
39 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAATA
Found at i:46300301 original size:38 final size:38
Alignment explanation
Indices: 46300153--46300316 Score: 222
Period size: 38 Copynumber: 4.3 Consensus size: 38
46300143 ATATGCTGGA
*
46300153 ATTATATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGT
1 ATTATATCCGGGTTAAATCCCGCAGGCTT-AGTGATGGT
* * * *
46300191 AATATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGT
1 ATTATATCCGGGTTAAATCCCGCAGGCTTAGTGATGGT
* * *
46300229 AATATATCCGGGTTAATTCCCGCAGGCTTCGTGATGGT
1 ATTATATCCGGGTTAAATCCCGCAGGCTTAGTGATGGT
*
46300267 ATTATATCCGGGTTAAATCCCGCAGGCCTAGTGATGGT
1 ATTATATCCGGGTTAAATCCCGCAGGCTTAGTGATGGT
*
46300305 ATTATATTCGGG
1 ATTATATCCGGG
46300317 CCTTTGAGCC
Statistics
Matches: 114, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 114 1.00
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.32
Consensus pattern (38 bp):
ATTATATCCGGGTTAAATCCCGCAGGCTTAGTGATGGT
Found at i:46300359 original size:45 final size:45
Alignment explanation
Indices: 46300309--46300433 Score: 198
Period size: 45 Copynumber: 2.8 Consensus size: 45
46300299 GATGGTATTA
*
46300309 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
46300354 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
*
46300399 TATTCGGG-CTTTCGAGCCTAGGAGGCTATAATGCC
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCC
46300434 AATGAAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
44 4 0.05
45 70 0.95
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:46309381 original size:20 final size:20
Alignment explanation
Indices: 46309369--46309406 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
46309359 TATAATCGAG
46309369 AATCCATTTATATAACCAGT
1 AATCCATTTATATAACCAGT
*
46309389 AATCCATCTATATAACCA
1 AATCCATTTATATAACCA
46309407 TTAACAGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.24, G:0.03, T:0.32
Consensus pattern (20 bp):
AATCCATTTATATAACCAGT
Found at i:46309588 original size:24 final size:24
Alignment explanation
Indices: 46309555--46309607 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
46309545 GTTGATGAAT
46309555 AGTAAGCTCT-ATCGAGCTG-GAAAC
1 AGTAAGCTCTGA-CGAGCTGAG-AAC
*
46309579 AGTAATCTCTGACGAGCTGAGAAC
1 AGTAAGCTCTGACGAGCTGAGAAC
46309603 AGTAA
1 AGTAA
46309608 ACCCTTACGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 24 0.92
25 2 0.08
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.21
Consensus pattern (24 bp):
AGTAAGCTCTGACGAGCTGAGAAC
Found at i:46309617 original size:24 final size:24
Alignment explanation
Indices: 46309567--46309620 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
46309557 TAAGCTCTAT
* *
46309567 CGAGCTGGAAACAGTAATCTCTGA
1 CGAGCTGGAAACAGTAAACCCTGA
*
46309591 CGAGCT-GAGAACAGTAAACCCTTA
1 CGAGCTGGA-AACAGTAAACCCTGA
46309615 CGAGCT
1 CGAGCT
46309621 AATATATCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 2 0.08
24 24 0.92
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.19
Consensus pattern (24 bp):
CGAGCTGGAAACAGTAAACCCTGA
Found at i:46328156 original size:13 final size:13
Alignment explanation
Indices: 46328138--46328163 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46328128 ATTTAAAACA
46328138 ATTTTTAGAAAAT
1 ATTTTTAGAAAAT
46328151 ATTTTTAGAAAAT
1 ATTTTTAGAAAAT
46328164 TTACCAAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
ATTTTTAGAAAAT
Found at i:46328180 original size:32 final size:34
Alignment explanation
Indices: 46328144--46328218 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 34
46328134 AACAATTTTT
*
46328144 AGAAAATATTTTTAGA-AAATTTA-CCAAACACC
1 AGAAAATATTTTTACATAAATTTATCCAAACACC
* *
46328176 AGAAAATA-TTTTACATAGATTTATCCAAACACT
1 AGAAAATATTTTTACATAAATTTATCCAAACACC
46328209 AGAAAATATT
1 AGAAAATATT
46328219 AACTTTTTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
31 6 0.16
32 14 0.38
33 16 0.43
34 1 0.03
ACGTcount: A:0.49, C:0.13, G:0.07, T:0.31
Consensus pattern (34 bp):
AGAAAATATTTTTACATAAATTTATCCAAACACC
Found at i:46328765 original size:19 final size:19
Alignment explanation
Indices: 46328743--46328810 Score: 54
Period size: 18 Copynumber: 3.7 Consensus size: 19
46328733 CATTTTTACC
46328743 TTTTTTAACTTTTGTCCC-
1 TTTTTTAACTTTTGTCCCT
* * *
46328761 TTTTTT--CTTTTTTTACTT
1 TTTTTTAAC-TTTTGTCCCT
*
46328779 TTTTTTAAATTTTGTCCTCT
1 TTTTTTAACTTTTGTCC-CT
46328799 TTTTTTAA-TTTT
1 TTTTTTAACTTTT
46328811 TTTCTTTATA
Statistics
Matches: 38, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
16 1 0.03
17 6 0.16
18 12 0.32
19 10 0.26
20 9 0.24
ACGTcount: A:0.12, C:0.13, G:0.03, T:0.72
Consensus pattern (19 bp):
TTTTTTAACTTTTGTCCCT
Found at i:46328766 original size:36 final size:36
Alignment explanation
Indices: 46328724--46328804 Score: 103
Period size: 36 Copynumber: 2.2 Consensus size: 36
46328714 CCTTTTACTT
* *
46328724 TCTTTTTTTCATTTTTAC-CTTTTTTAACTTTTGTCC
1 TCTTTTTTT-TTTTTTACTCTTTTTTAAATTTTGTCC
*
46328760 -CTTTTTTCTTTTTTTACTTTTTTTTAAATTTTGTCC
1 TCTTTTTT-TTTTTTTACTCTTTTTTAAATTTTGTCC
46328796 TCTTTTTTT
1 TCTTTTTTT
46328805 AATTTTTTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
35 14 0.36
36 18 0.46
37 7 0.18
ACGTcount: A:0.10, C:0.16, G:0.02, T:0.72
Consensus pattern (36 bp):
TCTTTTTTTTTTTTTACTCTTTTTTAAATTTTGTCC
Found at i:46328897 original size:23 final size:20
Alignment explanation
Indices: 46328859--46328921 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 20
46328849 TAATTTTAAA
* *
46328859 AAATTTGAAATGTATATTTG
1 AAATTTTAAATATATATTTG
*
46328879 AAATGTTTTATAATATATATTTTT
1 AAA--TTTTA-AATATATA-TTTG
46328903 AAATTTTAAATATATATTT
1 AAATTTTAAATATATATTT
46328922 TTGAAATTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
20 6 0.17
21 8 0.22
22 9 0.25
23 7 0.19
24 6 0.17
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.52
Consensus pattern (20 bp):
AAATTTTAAATATATATTTG
Found at i:46328914 original size:21 final size:23
Alignment explanation
Indices: 46328875--46328929 Score: 78
Period size: 21 Copynumber: 2.4 Consensus size: 23
46328865 GAAATGTATA
46328875 TTTGAAATGTTTTATAATATATATT
1 TTTGAAA--TTTTATAATATATATT
46328900 TTT-AAATTTTA-AATATATATT
1 TTTGAAATTTTATAATATATATT
46328921 TTTGAAATT
1 TTTGAAATT
46328930 ATTTTTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 13 0.45
22 10 0.34
24 3 0.10
25 3 0.10
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (23 bp):
TTTGAAATTTTATAATATATATT
Found at i:46328923 original size:22 final size:22
Alignment explanation
Indices: 46328871--46328929 Score: 68
Period size: 22 Copynumber: 2.6 Consensus size: 22
46328861 ATTTGAAATG
46328871 TATA-TTTGAAATGTTTTATAATA
1 TATATTTTGAAA--TTTTATAATA
*
46328894 TATATTTTTAAATTTTA-AATA
1 TATATTTTGAAATTTTATAATA
46328915 TATATTTTTGAAATT
1 TATA-TTTTGAAATT
46328930 ATTTTTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
21 8 0.25
22 14 0.44
23 4 0.12
24 6 0.19
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (22 bp):
TATATTTTGAAATTTTATAATA
Found at i:46328945 original size:35 final size:32
Alignment explanation
Indices: 46328884--46328961 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 32
46328874 ATTTGAAATG
46328884 TTTTATAATATATATTTTTAAATTTTAAATATATAT
1 TTTTA-AAT-TAT-TTTTTAAATTTTAAATATAT-T
46328920 TTTTGAAATTATTTTTTAAAATTTTAAATATATT
1 TTTT-AAATTATTTTTT-AAATTTTAAATATATT
46328954 TTTTAAAT
1 TTTTAAAT
46328962 ATTAAATATA
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
33 4 0.10
34 10 0.25
35 18 0.45
36 7 0.17
37 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (32 bp):
TTTTAAATTATTTTTTAAATTTTAAATATATT
Found at i:46328951 original size:33 final size:34
Alignment explanation
Indices: 46328898--46328961 Score: 105
Period size: 35 Copynumber: 1.9 Consensus size: 34
46328888 ATAATATATA
46328898 TTTTTAAATTTTAAATATATATTTTTGAAATTAT
1 TTTTTAAATTTTAAATATATATTTTTGAAATTAT
46328932 TTTTTAAAATTTTAAATATAT-TTTTT-AAAT
1 TTTTT-AAATTTTAAATATATATTTTTGAAAT
46328962 ATTAAATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
33 4 0.14
34 10 0.34
35 15 0.52
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (34 bp):
TTTTTAAATTTTAAATATATATTTTTGAAATTAT
Found at i:46328955 original size:20 final size:19
Alignment explanation
Indices: 46328893--46328976 Score: 79
Period size: 20 Copynumber: 4.5 Consensus size: 19
46328883 GTTTTATAAT
46328893 ATATATTTTTAAATTTTAA
1 ATATATTTTTAAATTTTAA
* *
46328912 ATATA-TATT---TTTGAA
1 ATATATTTTTAAATTTTAA
46328927 AT-TATTTTTTAAAATTTTAA
1 ATATA-TTTTT-AAATTTTAA
*
46328947 ATATATTTTTTAAATATTAA
1 ATATA-TTTTTAAATTTTAA
46328967 ATATATTTTT
1 ATATATTTTT
46328977 TAATAATATA
Statistics
Matches: 53, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
14 2 0.04
15 7 0.13
16 3 0.06
18 3 0.06
19 10 0.19
20 20 0.38
21 8 0.15
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (19 bp):
ATATATTTTTAAATTTTAA
Found at i:46328979 original size:13 final size:13
Alignment explanation
Indices: 46328906--46328963 Score: 56
Period size: 13 Copynumber: 4.8 Consensus size: 13
46328896 TATTTTTAAA
46328906 TTTTAAATATATAT
1 TTTTAAATATAT-T
46328920 TTTTGAAAT-TATT
1 TTTT-AAATATATT
46328933 TTTT-AA-A-A--
1 TTTTAAATATATT
46328941 TTTTAAATATATT
1 TTTTAAATATATT
46328954 TTTTAAATAT
1 TTTTAAATAT
46328964 TAAATATATT
Statistics
Matches: 37, Mismatches: 0, Indels: 15
0.71 0.00 0.29
Matches are distributed among these distances:
8 4 0.11
9 2 0.05
10 2 0.05
11 3 0.08
13 15 0.41
14 7 0.19
15 4 0.11
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (13 bp):
TTTTAAATATATT
Found at i:46328984 original size:22 final size:21
Alignment explanation
Indices: 46328925--46328985 Score: 90
Period size: 20 Copynumber: 3.0 Consensus size: 21
46328915 TATATTTTTG
*
46328925 AAAT-TATTTTTTAAAATTTT
1 AAATATATTTTTTAAAATATT
46328945 AAATATATTTTTT-AAATATT
1 AAATATATTTTTTAAAATATT
46328965 AAATATATTTTTTAATAATAT
1 AAATATATTTTTTAA-AATAT
46328986 AAAACATTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
20 23 0.62
21 9 0.24
22 5 0.14
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
AAATATATTTTTTAAAATATT
Found at i:46329083 original size:21 final size:21
Alignment explanation
Indices: 46329044--46329106 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 21
46329034 TTTTATAATA
*
46329044 TTTTAAATATTTTTTAATTTG
1 TTTTAAATATTTTTAAATTTG
46329065 TTTTATAATA-TTTTAAATTATG
1 TTTTA-AATATTTTTAAATT-TG
46329087 ATTTTTAAATTATTTTTAAA
1 --TTTTAAA-TATTTTTAAA
46329107 GATATTCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
21 13 0.37
22 6 0.17
23 2 0.06
24 7 0.20
25 7 0.20
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTTAAATATTTTTAAATTTG
Found at i:46329210 original size:14 final size:15
Alignment explanation
Indices: 46329191--46329258 Score: 66
Period size: 18 Copynumber: 4.2 Consensus size: 15
46329181 ATTAATTAGA
46329191 AAAAAATATTT-TTT
1 AAAAAATATTTATTT
46329205 AAAAAATATTTATTTATT
1 AAAAAATATTTA--T-TT
46329223 AAAAAATTGAATTTATTT
1 AAAAAA-T--ATTTATTT
*
46329241 AAAAAATATATATTT
1 AAAAAATATTTATTT
46329256 AAA
1 AAA
46329259 TTAAAAATTA
Statistics
Matches: 46, Mismatches: 1, Indels: 13
0.77 0.02 0.22
Matches are distributed among these distances:
14 11 0.24
15 10 0.22
17 2 0.04
18 16 0.35
19 2 0.04
21 5 0.11
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (15 bp):
AAAAAATATTTATTT
Found at i:46329224 original size:18 final size:18
Alignment explanation
Indices: 46329196--46329256 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
46329186 TTAGAAAAAA
*
46329196 ATATTTTTTAAAAAATAT
1 ATATTTATTAAAAAATAT
*
46329214 TTATTTATTAAAAAAT-T
1 ATATTTATTAAAAAATAT
46329231 GA-ATTTATTTAAAAAATAT
1 -ATATTTA-TTAAAAAATAT
46329250 ATATTTA
1 ATATTTA
46329257 AATTAAAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
17 6 0.17
18 24 0.67
19 6 0.17
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
ATATTTATTAAAAAATAT
Found at i:46329768 original size:20 final size:20
Alignment explanation
Indices: 46329706--46329769 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
46329696 AATTTTTTTT
46329706 ATTTTAGTACACATTCATAA
1 ATTTTAGTACACATTCATAA
* ** ** *
46329726 ATTTATATTTTA-ATTTTTTA
1 ATTT-TAGTACACATTCATAA
46329746 ATTTTAGTACACATTCATAA
1 ATTTTAGTACACATTCATAA
46329766 ATTT
1 ATTT
46329770 ATATACTTAA
Statistics
Matches: 30, Mismatches: 12, Indels: 4
0.65 0.26 0.09
Matches are distributed among these distances:
19 4 0.13
20 22 0.73
21 4 0.13
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (20 bp):
ATTTTAGTACACATTCATAA
Found at i:46329791 original size:40 final size:40
Alignment explanation
Indices: 46329706--46329791 Score: 120
Period size: 40 Copynumber: 2.1 Consensus size: 40
46329696 AATTTTTTTT
* * *
46329706 ATTTTAGTACACATTCATAAATTTATATTTTAATTTTTTA
1 ATTTTAGTACACATTCATAAATTTATATCTTAATTATATA
46329746 ATTTTAGTACACATTCATAAATTTATATACTTAA-TATATA
1 ATTTTAGTACACATTCATAAATTTATAT-CTTAATTATATA
*
46329786 TTTTTA
1 ATTTTA
46329792 ATAGGTAAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 37 0.90
41 4 0.10
ACGTcount: A:0.37, C:0.08, G:0.02, T:0.52
Consensus pattern (40 bp):
ATTTTAGTACACATTCATAAATTTATATCTTAATTATATA
Found at i:46329927 original size:71 final size:72
Alignment explanation
Indices: 46329847--46329995 Score: 264
Period size: 71 Copynumber: 2.1 Consensus size: 72
46329837 AAAAAATTTA
*
46329847 AAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTCAAAATTTTAATATATTTAATAT
1 AAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTCAAAATTTTAATATATTCAATAT
46329912 A-TTTTT
66 ATTTTTT
* *
46329918 AAAAAATTAAATATATTAAAAAATTTTAAGTATAACCAATTTTAAAATTTTAATATATTCAATAT
1 AAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTCAAAATTTTAATATATTCAATAT
46329983 ATTTTTT
66 ATTTTTT
46329990 AAAAAA
1 AAAAAA
46329996 ATATTTTAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 63 0.85
72 11 0.15
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (72 bp):
AAAAAATTAAATATATTAAAAAATGTTAAGTATAACCAATTTCAAAATTTTAATATATTCAATAT
ATTTTTT
Found at i:46329946 original size:19 final size:19
Alignment explanation
Indices: 46329820--46329951 Score: 50
Period size: 18 Copynumber: 7.3 Consensus size: 19
46329810 AGATTTTCTT
*
46329820 AATATATT-TAAAATTTTA
1 AATATATTAAAAAATTTTA
* *
46329838 AA-AAATTTAAAAAA-ATTA
1 AATATA-TTAAAAAATTTTA
*
46329856 AATATATTAAAAAATGTT-
1 AATATATTAAAAAATTTTA
* ** *
46329874 AA-GTA-TAACCAATTTCA
1 AATATATTAAAAAATTTTA
* * *
46329891 AA-ATTTTAATATA-TTTA
1 AATATATTAAAAAATTTTA
*
46329908 ATATATTTTTAAAAAA--TTA
1 A-ATA-TATTAAAAAATTTTA
46329927 AATATATTAAAAAATTTTA
1 AATATATTAAAAAATTTTA
*
46329946 AGTATA
1 AATATA
46329952 ACCAATTTTA
Statistics
Matches: 83, Mismatches: 20, Indels: 21
0.67 0.16 0.17
Matches are distributed among these distances:
16 7 0.08
17 20 0.24
18 27 0.33
19 21 0.25
20 8 0.10
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
AATATATTAAAAAATTTTA
Found at i:46330074 original size:17 final size:17
Alignment explanation
Indices: 46330051--46330120 Score: 61
Period size: 17 Copynumber: 4.0 Consensus size: 17
46330041 AGAAAAAGAT
*
46330051 TTTTTAATATATTTAAAA
1 TTTTAAATATA-TTAAAA
*
46330069 TTTTAAA-AAACTTAAAAA
1 TTTTAAATATA-TT-AAAA
**
46330087 AATTAAATATATTAAAA
1 TTTTAAATATATTAAAA
*
46330104 TTTTAAATATGTTAAAA
1 TTTTAAATATATTAAAA
46330121 GAAAATGTTG
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
17 22 0.54
18 17 0.41
19 2 0.05
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (17 bp):
TTTTAAATATATTAAAA
Found at i:46331973 original size:30 final size:30
Alignment explanation
Indices: 46331937--46332039 Score: 109
Period size: 29 Copynumber: 3.4 Consensus size: 30
46331927 GTCACAGAGC
* * *
46331937 AGTTCATATCACTTGGACATTGGCGGTTCA
1 AGTTCATATCACCTGGACATAGGCGGTTCG
*** *
46331967 AGTTCATATCACCCAAACATGGGC-GTTCG
1 AGTTCATATCACCTGGACATAGGCGGTTCG
*
46331996 AGTTCATATCACCTGGACATAGCGTGGTTCG
1 AGTTCATATCACCTGGACATAG-GCGGTTCG
*
46332027 AGTTCATTTCACC
1 AGTTCATATCACC
46332040 CAGAGCAACC
Statistics
Matches: 59, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
29 22 0.37
30 20 0.34
31 17 0.29
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.30
Consensus pattern (30 bp):
AGTTCATATCACCTGGACATAGGCGGTTCG
Found at i:46335367 original size:12 final size:13
Alignment explanation
Indices: 46335313--46335367 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 13
46335303 AAACGTTTGA
46335313 ATATCTTTAAAATT
1 ATAT-TTTAAAATT
46335327 A-ATTTTAAAATT
1 ATATTTTAAAATT
46335339 AATAATTTATAAAAATT
1 -AT-ATTT-T-AAAATT
46335356 ATA-TTTAAAATT
1 ATATTTTAAAATT
46335368 TAAAAAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
12 15 0.42
13 4 0.11
14 3 0.08
15 5 0.14
16 3 0.08
17 6 0.17
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
ATATTTTAAAATT
Found at i:46335381 original size:11 final size:11
Alignment explanation
Indices: 46335365--46335399 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
46335355 TATATTTAAA
46335365 ATTTAAAAAAT
1 ATTTAAAAAAT
46335376 ATTTAAAAAATAT
1 ATTT-AAAAA-AT
46335389 ATTTAAAAAAT
1 ATTTAAAAAAT
46335400 TATAAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 6 0.27
12 10 0.45
13 6 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
ATTTAAAAAAT
Found at i:46335390 original size:13 final size:13
Alignment explanation
Indices: 46335365--46335399 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
46335355 TATATTTAAA
46335365 ATTT-AAAAA-AT
1 ATTTAAAAAATAT
46335376 ATTTAAAAAATAT
1 ATTTAAAAAATAT
46335389 ATTTAAAAAAT
1 ATTTAAAAAAT
46335400 TATAAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 4 0.18
12 5 0.23
13 13 0.59
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTTAAAAAATAT
Found at i:46335399 original size:33 final size:34
Alignment explanation
Indices: 46335343--46335406 Score: 89
Period size: 33 Copynumber: 1.9 Consensus size: 34
46335333 AAAATTAATA
46335343 ATTTATAAAAATTATATTTAAAATT-TAAAAAAT
1 ATTTATAAAAATTATATTTAAAATTATAAAAAAT
46335376 ATTTA-AAAAA-TATATTTAAAAAATTATAAAA
1 ATTTATAAAAATTATATTT--AAAATTATAAAA
46335407 CAAATAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
31 7 0.25
32 5 0.18
33 11 0.39
34 5 0.18
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (34 bp):
ATTTATAAAAATTATATTTAAAATTATAAAAAAT
Found at i:46335518 original size:29 final size:29
Alignment explanation
Indices: 46335446--46335555 Score: 84
Period size: 29 Copynumber: 3.6 Consensus size: 29
46335436 TAAAAATAAT
*
46335446 ATATTTTAAAT-AATTTAAAAATCATAATTTAA
1 ATATTTAAAATAAATTTAAAAA--AT-ATTT-A
46335478 TATATTATAAAATAAATTTAAAAAATATTTA
1 -ATATT-TAAAATAAATTTAAAAAATATTTA
46335509 ATATTTAAAATATACATTT--AAAATATTATA
1 ATATTTAAAATA-A-ATTTAAAAAATATT-TA
*
46335539 A-AATTAATAATAAATTT
1 ATATTTAA-AATAAATTT
46335556 GGAAGGTCAT
Statistics
Matches: 69, Mismatches: 2, Indels: 17
0.78 0.02 0.19
Matches are distributed among these distances:
28 4 0.06
29 21 0.30
30 13 0.19
31 5 0.07
32 4 0.06
33 7 0.10
34 5 0.07
35 10 0.14
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (29 bp):
ATATTTAAAATAAATTTAAAAAATATTTA
Found at i:46335531 original size:135 final size:134
Alignment explanation
Indices: 46335337--46335635 Score: 352
Period size: 135 Copynumber: 2.2 Consensus size: 134
46335327 AATTTTAAAA
* ** *** *
46335337 TTAATAATTTATAAAAATTATATTTAAAATTTAAAAAATATTTAAAAAATATATTTAAAAAATTA
1 TTAAT-ATTTA-AAAAATAATATTTAAAAAATATTTAATATTTAAAAAATACATTTAAAAAATTA
* *
46335402 TAAAACAAATAATAAATTTGAAAGTTCATATCTTTAAAA-A-TAATATATTTTAAATAATTTAAA
64 TAAAACAAATAATAAATTTGAAAGGTCATATCTTTAAAATATTAA-ATATTTTAAATAATTAAAA
46335465 AATCATAAT
128 AAT-AT-AT
* * *
46335474 TTAATATATTATAAAATAA-ATTTAAAAAATATTTAATATTTAAAATATACATTTAAAATATTAT
1 TTAATAT-TTAAAAAATAATATTTAAAAAATATTTAATATTTAAAAAATACATTTAAAAAATTAT
** * * * *
46335538 AAAATTAATAATAAATTTGGAAGGTCATATCTTTAAAATATTTAAATGTTTTATATTATTAAAAA
65 AAAACAAATAATAAATTTGAAAGGTCATATCTTTAAAATA-TTAAATATTTTAAATAATTAAAAA
46335603 ATATAT
129 ATATAT
46335609 TTAATATTTAAAAAATAATATTTAAAA
1 TTAATATTTAAAAAATAATATTTAAAA
46335636 TTTTAAAAAA
Statistics
Matches: 138, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
134 10 0.07
135 88 0.64
136 11 0.08
137 26 0.19
138 3 0.02
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (134 bp):
TTAATATTTAAAAAATAATATTTAAAAAATATTTAATATTTAAAAAATACATTTAAAAAATTATA
AAACAAATAATAAATTTGAAAGGTCATATCTTTAAAATATTAAATATTTTAAATAATTAAAAAAT
ATAT
Found at i:46335611 original size:21 final size:21
Alignment explanation
Indices: 46335587--46335656 Score: 74
Period size: 21 Copynumber: 3.3 Consensus size: 21
46335577 ATTTAAATGT
46335587 TTTATATTATTAAAAAATATA
1 TTTATATTATTAAAAAATATA
46335608 TTTA-A-TATTTAAAAAATAATA
1 TTTATATTA-TTAAAAAAT-ATA
*
46335629 TTTAAAATT-TTAAAAAATATA
1 TTT-ATATTATTAAAAAATATA
46335650 TATTATA
1 T-TTATA
46335657 AAACATTTCA
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
19 2 0.05
20 10 0.24
21 16 0.38
22 12 0.29
23 1 0.02
24 1 0.02
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TTTATATTATTAAAAAATATA
Found at i:46335615 original size:22 final size:21
Alignment explanation
Indices: 46335590--46335650 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
46335580 TAAATGTTTT
46335590 ATATTATTAAAAAATATATTTA
1 ATATT-TTAAAAAATATATTTA
46335612 ATA-TTTAAAAAATAATATTTA
1 ATATTTTAAAAAAT-ATATTTA
*
46335633 AAATTTTAAAAAATATAT
1 ATATTTTAAAAAATATAT
46335651 ATTATAAAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
20 9 0.25
21 14 0.39
22 13 0.36
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
ATATTTTAAAAAATATATTTA
Found at i:46335644 original size:23 final size:21
Alignment explanation
Indices: 46335596--46335659 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 21
46335586 TTTTATATTA
*
46335596 TTAAAAAAT-ATATTTAATAT
1 TTAAAAAATAATATTTAAAAT
46335616 TTAAAAAATAATATTTAAAATT
1 TTAAAAAATAATATTTAAAA-T
46335638 TTAAAAAATATATATTATAAAA
1 TTAAAAAATA-ATATT-TAAAA
46335660 CATTTCAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
20 9 0.23
21 9 0.23
22 11 0.28
23 5 0.13
24 5 0.13
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
TTAAAAAATAATATTTAAAAT
Found at i:46345621 original size:17 final size:18
Alignment explanation
Indices: 46345581--46345622 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
46345571 TTTGTATACA
* **
46345581 TCAAATTTTAAATTTGGT
1 TCAATTTTTAAATTTCAT
46345599 TCAATTTTTAAATTTCAT
1 TCAATTTTTAAATTTCAT
46345617 T-AATTT
1 TCAATTT
46345623 CGTTATTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (18 bp):
TCAATTTTTAAATTTCAT
Found at i:46347304 original size:12 final size:12
Alignment explanation
Indices: 46347289--46347321 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
46347279 TATTTTTTAG
46347289 TTATTTACTCAC
1 TTATTTACTCAC
*
46347301 TTATTTATTCAC
1 TTATTTACTCAC
46347313 TTATTTACT
1 TTATTTACT
46347322 TCAATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.58
Consensus pattern (12 bp):
TTATTTACTCAC
Found at i:46356788 original size:18 final size:20
Alignment explanation
Indices: 46356766--46356807 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
46356756 CTGTGTTGCA
*
46356766 ACACAGCCTTATGTTGAGCC
1 ACACAACCTTATGTTGAGCC
46356786 ACAACAACCTTATGTTGAGCC
1 AC-ACAACCTTATGTTGAGCC
46356807 A
1 A
46356808 TATCAACCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 2 0.10
21 18 0.90
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (20 bp):
ACACAACCTTATGTTGAGCC
Found at i:46356798 original size:21 final size:21
Alignment explanation
Indices: 46356772--46356816 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
46356762 TGCAACACAG
46356772 CCTTATGTTGAGCCACAACAA
1 CCTTATGTTGAGCCACAACAA
* *
46356793 CCTTATGTTGAGCCATATCAA
1 CCTTATGTTGAGCCACAACAA
46356814 CCT
1 CCT
46356817 GTGTTTAGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (21 bp):
CCTTATGTTGAGCCACAACAA
Found at i:46362610 original size:48 final size:47
Alignment explanation
Indices: 46362551--46362826 Score: 235
Period size: 48 Copynumber: 5.9 Consensus size: 47
46362541 GCCACATTAT
* * *
46362551 GAGAGCGAGTGTAAGACGATGTCTGGGACATGGCATCGGCCTTGAGA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATA
* * *
46362598 CGAGACCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGG-C-T-ACGA
1 -GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGA-TA
* ** *
46362642 GATGTGTTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAC--GCATA
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTTG-ATA
* * * * * *
46362690 GAGGTGCTAGTGTAAGACCAAGTCTGGGACATGGCGTCGGTCTTGATTTT
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGA--TA
* * * *
46362740 GATAGTCAGTGTAAGACCAGGTCTGGGACATGGCATC-GACTTGATA
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATA
46362786 GATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
46362827 ATTATACCCT
Statistics
Matches: 186, Mismatches: 28, Indels: 28
0.77 0.12 0.12
Matches are distributed among these distances:
43 3 0.02
44 13 0.07
45 15 0.08
46 16 0.09
47 46 0.25
48 59 0.32
49 31 0.17
50 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (47 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATA
Found at i:46366596 original size:34 final size:34
Alignment explanation
Indices: 46366531--46366602 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 34
46366521 TGAATTAGGA
*
46366531 TAAGGCTACACTGTTATTGCTAATGTAATGGG-T
1 TAAGGCTACACTGATATTGCTAATGTAATGGGCT
* *
46366564 TAAGGCCTATACTGATATTGCTACTG-ATATGGGCT
1 TAAGG-CTACACTGATATTGCTAATGTA-ATGGGCT
46366599 TAAG
1 TAAG
46366603 CCCAGACTGT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
33 6 0.18
34 22 0.67
35 5 0.15
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.35
Consensus pattern (34 bp):
TAAGGCTACACTGATATTGCTAATGTAATGGGCT
Found at i:46369269 original size:40 final size:40
Alignment explanation
Indices: 46369209--46369355 Score: 215
Period size: 40 Copynumber: 3.7 Consensus size: 40
46369199 ATTTGAATGA
46369209 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
* *
46369249 TATCTGGGCTAAGTCCCGAAGGCATTTACGCTAGTGATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
* * * *
46369289 TATCCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTGA-TA
1 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTT
*
46369329 TATCCGGGCTAAGACCCGAAGGCATTT
1 TATCCGGGCTAAGTCCCGAAGGCATTT
46369356 GTGCGAGTTG
Statistics
Matches: 97, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 94 0.97
41 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
Found at i:46369356 original size:40 final size:40
Alignment explanation
Indices: 46369208--46369428 Score: 198
Period size: 40 Copynumber: 5.5 Consensus size: 40
46369198 CATTTGAATG
* * *
46369208 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTGATT
* * * *
46369248 TTATCTGGGCTAAGTCCCGAAGGCATTT-ACGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTC-CGAGTGATT
*
46369288 TTATCCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTTGA-T
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTCCGAG-TGATT
* * *
46369328 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTCCGAG-TGATT
* * * * * ** *
46369368 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTGATT
* *
46369408 ATATCC-GGCTAAATTCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
46369429 AAACTTGGGT
Statistics
Matches: 155, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 13 0.08
40 138 0.89
41 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTCCGAGTGATT
Found at i:46380771 original size:37 final size:37
Alignment explanation
Indices: 46380729--46380884 Score: 197
Period size: 37 Copynumber: 4.2 Consensus size: 37
46380719 GGCAGATGTA
* * *
46380729 TAGCTCTACGGAGCATTTGGCGTGTTATCAGTTGGAT
1 TAGCTCTTCAGAGAATTTGGCGTGTTATCAGTTGGAT
* * *
46380766 TAGCTCTTCGGAGAATTTGGCGCGTTATCGGTTGGAT
1 TAGCTCTTCAGAGAATTTGGCGTGTTATCAGTTGGAT
*
46380803 TAGCTCTTCAGAGAATTTTGCGTGTTATCAGTTGGAT
1 TAGCTCTTCAGAGAATTTGGCGTGTTATCAGTTGGAT
* * * *
46380840 TAGCTC-TCTAGAGCACTTGGCGTGTTTTCGGTTGGAT
1 TAGCTCTTC-AGAGAATTTGGCGTGTTATCAGTTGGAT
46380877 TAGCTCTT
1 TAGCTCTT
46380885 ATGAACGTTT
Statistics
Matches: 104, Mismatches: 13, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
36 2 0.02
37 101 0.97
38 1 0.01
ACGTcount: A:0.17, C:0.17, G:0.28, T:0.38
Consensus pattern (37 bp):
TAGCTCTTCAGAGAATTTGGCGTGTTATCAGTTGGAT
Found at i:46384699 original size:27 final size:26
Alignment explanation
Indices: 46384669--46384759 Score: 92
Period size: 27 Copynumber: 3.4 Consensus size: 26
46384659 TTCAGATTGC
* * * *
46384669 CACAAGGGCTTCCTTTACATGGTTATG
1 CACAAAGGCTTCATTTACATGGATA-A
46384696 CACAAAGGCTTCATTTACATGGATAA
1 CACAAAGGCTTCATTTACATGGATAA
* * *
46384722 CAACAAAGGCTTCTTTTACATGTATAGC
1 C-ACAAAGGCTTCATTTACATGGATA-A
46384750 CACAAAGGCT
1 CACAAAGGCT
46384760 CTTATTACAA
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.02
27 53 0.96
28 1 0.02
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
CACAAAGGCTTCATTTACATGGATAA
Found at i:46384767 original size:27 final size:27
Alignment explanation
Indices: 46384696--46384768 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
46384686 CATGGTTATG
*
46384696 CACAAAGGCT-TCATTTACATGGATAAC
1 CACAAAGGCTCTTA-TTACATGGATAAC
* * *
46384723 AACAAAGGCTTCTT-TTACATGTATAGC
1 CACAAAGGC-TCTTATTACATGGATAAC
46384750 CACAAAGGCTCTTATTACA
1 CACAAAGGCTCTTATTACA
46384769 AAGATTTCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 4 0.11
27 32 0.84
28 1 0.03
29 1 0.03
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.29
Consensus pattern (27 bp):
CACAAAGGCTCTTATTACATGGATAAC
Found at i:46384841 original size:26 final size:26
Alignment explanation
Indices: 46384776--46384865 Score: 90
Period size: 26 Copynumber: 3.5 Consensus size: 26
46384766 ACAAAGATTT
* * **
46384776 CCACAAATGCTTTCATTTCAAATACA
1 CCACAAAGGCTTCCATTTCAAATATG
* * * *
46384802 CCAAAAACGTTTCCATTTCATATATG
1 CCACAAAGGCTTCCATTTCAAATATG
**
46384828 CCACAAAGGCTTCCATTTCAGGTATG
1 CCACAAAGGCTTCCATTTCAAATATG
46384854 CCACAAAGGCTT
1 CCACAAAGGCTT
46384866 TCCTTTTAGA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.33, C:0.27, G:0.11, T:0.29
Consensus pattern (26 bp):
CCACAAAGGCTTCCATTTCAAATATG
Found at i:46384887 original size:28 final size:28
Alignment explanation
Indices: 46384829--46384928 Score: 107
Period size: 28 Copynumber: 3.6 Consensus size: 28
46384819 TCATATATGC
* * * *
46384829 CACAAAGGC-TTCCATTT-CAGGTATGC
1 CACAAAGGCTTTCCTTTTAGAGGTTTGG
46384855 CACAAAGGCTTTCCTTTTAGAGGTTTGG
1 CACAAAGGCTTTCCTTTTAGAGGTTTGG
* * *
46384883 CACAAAAGCTTTCCTTTCAGAGG-TTCG
1 CACAAAGGCTTTCCTTTTAGAGGTTTGG
46384910 CTACAAAGGCTTTCCTTTT
1 C-ACAAAGGCTTTCCTTTT
46384929 TTGGTGTTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 9 0.15
27 11 0.18
28 42 0.68
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (28 bp):
CACAAAGGCTTTCCTTTTAGAGGTTTGG
Found at i:46386057 original size:7 final size:7
Alignment explanation
Indices: 46386045--46386077 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
46386035 AATATAAACA
46386045 ATTTAAT
1 ATTTAAT
46386052 ATTTAAT
1 ATTTAAT
46386059 ATTTAAT
1 ATTTAAT
46386066 ATTTAAT
1 ATTTAAT
46386073 -TTTAA
1 ATTTAA
46386078 ACTACTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.19
7 21 0.81
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
ATTTAAT
Found at i:46386365 original size:21 final size:21
Alignment explanation
Indices: 46386341--46386382 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
46386331 TTATTATGTG
**
46386341 GTATCGATATTGTATTAAAAA
1 GTATCGATATTCAATTAAAAA
*
46386362 GTATTGATATTCAATTAAAAA
1 GTATCGATATTCAATTAAAAA
46386383 TCGATACCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (21 bp):
GTATCGATATTCAATTAAAAA
Found at i:46387424 original size:18 final size:18
Alignment explanation
Indices: 46387379--46387427 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
46387369 TCCATATCAC
* *
46387379 TTGCTATTTCAATAGCAT
1 TTGCTATTTCAAAAACAT
46387397 TT-CTATTTCAAAAACAT
1 TTGCTATTTCAAAAACAT
*
46387414 TTGCCATTTCAAAA
1 TTGCTATTTCAAAA
46387428 TCAGTCATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 15 0.56
18 12 0.44
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (18 bp):
TTGCTATTTCAAAAACAT
Found at i:46392320 original size:40 final size:39
Alignment explanation
Indices: 46392261--46392367 Score: 110
Period size: 40 Copynumber: 2.7 Consensus size: 39
46392251 AGGTGAAATG
* * * * *
46392261 GTTATATGGAACTAAATATATGAAATGTTGATACGAAT-T
1 GTTATATGAAAATAGATATATGAAATGTT-ATACAAATCA
46392300 GATTATATGAAAA-ATGATATATGAAATAGTTATACAAATCA
1 G-TTATATGAAAATA-GATATATGAAAT-GTTATACAAATCA
*
46392341 GTTATATGGAAATAGATATATGAAATG
1 GTTATATGAAAATAGATATATGAAATG
46392368 GAACATTGGA
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
39 3 0.05
40 49 0.86
41 5 0.09
ACGTcount: A:0.46, C:0.04, G:0.17, T:0.34
Consensus pattern (39 bp):
GTTATATGAAAATAGATATATGAAATGTTATACAAATCA
Found at i:46392365 original size:13 final size:13
Alignment explanation
Indices: 46392303--46392366 Score: 58
Period size: 13 Copynumber: 4.8 Consensus size: 13
46392293 ACGAATTGAT
*
46392303 TATATGAAAAATGA
1 TATATGAAATA-GA
*
46392317 TATATGAAATAGT
1 TATATGAAATAGA
* *
46392330 TATA-CAAATCAGT
1 TATATGAAAT-AGA
46392343 TATATGGAAATAGA
1 TATAT-GAAATAGA
46392357 TATATGAAAT
1 TATATGAAAT
46392367 GGAACATTGG
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
12 4 0.10
13 17 0.40
14 17 0.40
15 4 0.10
ACGTcount: A:0.50, C:0.03, G:0.14, T:0.33
Consensus pattern (13 bp):
TATATGAAATAGA
Found at i:46409663 original size:13 final size:13
Alignment explanation
Indices: 46409645--46409669 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
46409635 TATGTGATAT
46409645 GTGTGAAAATTTC
1 GTGTGAAAATTTC
46409658 GTGTGAAAATTT
1 GTGTGAAAATTT
46409670 TATCGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:46410855 original size:42 final size:42
Alignment explanation
Indices: 46410789--46410912 Score: 124
Period size: 42 Copynumber: 2.9 Consensus size: 42
46410779 CGATTTGAGA
* * * *
46410789 ATTACGTGTAAGACCATGTATGGGACATTGGCATCGTATATG
1 ATTACATGTAAGACCCTATCTGGGACATTGGCATCGTATATG
* * * *
46410831 ATTTCATGTAAGACCCTATCTGGGATAGTGGCATCGATATTTG
1 ATTACATGTAAGACCCTATCTGGGACATTGGCATCG-TATATG
* * *
46410874 ATTACATATAAGA-CCTCATCTGGGACGTTGGCATTGTAT
1 ATTACATGTAAGACCCT-ATCTGGGACATTGGCATCGTAT
46410913 GAGCTTTTCG
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
42 35 0.53
43 31 0.47
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (42 bp):
ATTACATGTAAGACCCTATCTGGGACATTGGCATCGTATATG
Found at i:46410906 original size:43 final size:42
Alignment explanation
Indices: 46410809--46410912 Score: 113
Period size: 43 Copynumber: 2.5 Consensus size: 42
46410799 AGACCATGTA
* * *
46410809 TGGGACATTGGCATCGTATATGATTTCATGTAAGACCCTATC
1 TGGGACGTTGGCATCGTATATGATTACATATAAGACCCTATC
* *
46410851 TGGGATAG-TGGCATCGATATTTGATTACATATAAGA-CCTCATC
1 TGGGA-CGTTGGCATCG-TATATGATTACATATAAGACCCT-ATC
*
46410894 TGGGACGTTGGCATTGTAT
1 TGGGACGTTGGCATCGTAT
46410913 GAGCTTTTCG
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
42 20 0.39
43 31 0.61
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (42 bp):
TGGGACGTTGGCATCGTATATGATTACATATAAGACCCTATC
Found at i:46424400 original size:40 final size:41
Alignment explanation
Indices: 46424341--46424572 Score: 260
Period size: 40 Copynumber: 5.8 Consensus size: 41
46424331 CATTTGAATG
* * *
46424341 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * * *
46424381 TTATCCAGGCCAAGACCCGAAGGCATTTGTACGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * * *
46424421 ATACCCGGGATAAGACTCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
46424461 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
46424501 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
46424541 ATATCTGGGCTAAGACCC-AAGGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAA-GGCATTTGTGC
46424573 TTGTGGTTAT
Statistics
Matches: 160, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 151 0.94
41 5 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:46424555 original size:120 final size:120
Alignment explanation
Indices: 46424341--46424592 Score: 303
Period size: 120 Copynumber: 2.1 Consensus size: 120
46424331 CATTTGAATG
* * *
46424341 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCAGGCCAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCAGGCCAAGACCCGAAGGCA
* *
46424406 TTTGTACGAGTTGCTATACCCGGGATAAGACTCGAA-GGCAATTGTGCTAGTGATT
66 TTTGTACGAGTTGATATACCCGGGATAAGAC-CCAAGGGCAATTGTGCTAGTGATT
* * ** * *
46424461 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCTGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG-TGATTATATCCAGGCCAAGACCCGAAGGC
* * * * * * *
46424525 ATTTGTGCGAGTTGATATATCTGGGCTAAGACCCAAGGGCATTTGTGCTTGTGGTT
65 ATTTGTACGAGTTGATATACCCGGGATAAGACCCAAGGGCAATTGTGCTAGTGATT
46424581 ATATCC-GGCTAA
1 ATATCCGGGCTAA
46424593 ATTCCGAAGA
Statistics
Matches: 111, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
119 9 0.08
120 99 0.89
121 3 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCAGGCCAAGACCCGAAGGCA
TTTGTACGAGTTGATATACCCGGGATAAGACCCAAGGGCAATTGTGCTAGTGATT
Found at i:46424585 original size:80 final size:80
Alignment explanation
Indices: 46424341--46424572 Score: 315
Period size: 80 Copynumber: 2.9 Consensus size: 80
46424331 CATTTGAATG
* *
46424341 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCAGGCCAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
* *
46424406 TTTGTACGAGTTGCT
66 TTTGTGCGAGTTGAT
* * * *
46424421 ATACCCGGGATAAGACTCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
46424486 TTTGTGCGAGTTGAT
66 TTTGTGCGAGTTGAT
* * * * *
46424501 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGA-TATATCTGGGCTAAGACCC-AAGGG
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAA-GG
46424564 CATTTGTGC
64 CATTTGTGC
46424573 TTGTGGTTAT
Statistics
Matches: 133, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
79 2 0.02
80 128 0.96
81 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGAT
Found at i:46432515 original size:40 final size:40
Alignment explanation
Indices: 46432456--46432707 Score: 298
Period size: 40 Copynumber: 6.3 Consensus size: 40
46432446 CATTTGAATG
* * *
46432456 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * *
46432496 TTATCCGGGCCAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * *
46432536 ATA-CTCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATC-CGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
46432576 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
46432616 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* ** *
46432656 ATATCCGGGCTAAGACCCGAGGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
46432696 ATATCC-GGCTAA
1 ATATCCGGGCTAA
46432708 ATTTCGAAGA
Statistics
Matches: 183, Mismatches: 23, Indels: 13
0.84 0.11 0.06
Matches are distributed among these distances:
39 11 0.06
40 166 0.91
41 6 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:46432670 original size:120 final size:120
Alignment explanation
Indices: 46432456--46432707 Score: 348
Period size: 120 Copynumber: 2.1 Consensus size: 120
46432446 CATTTGAATG
* * *
46432456 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCCAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCCAAGACCCGAAGGCA
*
46432521 TTTGTGCGAGTTGCTATACTCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
66 TTTGTGCGAGTTGATATACTCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
* * * *
46432576 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG-TGATTATATCCGGGCCAAGACCCGAAGGC
* * * * *
46432640 ATTTGTGCGAGTTGATATA-TCCGGGCTAAGACCCGAGGGCATTTGTGCTTGTGGTT
65 ATTTGTGCGAGTTGATATACT-CGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
46432696 ATATCC-GGCTAA
1 ATATCCGGGCTAA
46432708 ATTTCGAAGA
Statistics
Matches: 116, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
119 7 0.06
120 106 0.91
121 3 0.03
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCCAAGACCCGAAGGCA
TTTGTGCGAGTTGATATACTCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:46432703 original size:80 final size:80
Alignment explanation
Indices: 46432456--46432687 Score: 360
Period size: 80 Copynumber: 2.9 Consensus size: 80
46432446 CATTTGAATG
*
46432456 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCCAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
*
46432521 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGAT
* *
46432536 ATA-CTCGGGATAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGC
1 ATATC-CGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGC
46432600 ATTTGTGCGAGTTGAT
65 ATTTGTGCGAGTTGAT
* * * *
46432616 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAGGGC
1 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGC
46432680 ATTTGTGC
65 ATTTGTGC
46432688 TTGTGGTTAT
Statistics
Matches: 139, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
79 1 0.01
80 134 0.96
81 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGAT
Found at i:46440844 original size:19 final size:19
Alignment explanation
Indices: 46440822--46440860 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
46440812 CCACTTACTA
46440822 CAATTCAAT-ACTTTCAATT
1 CAATT-AATAACTTTCAATT
*
46440841 CAATTAATAATTTTCAATT
1 CAATTAATAACTTTCAATT
46440860 C
1 C
46440861 TCAAACAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (19 bp):
CAATTAATAACTTTCAATT
Found at i:46441031 original size:22 final size:22
Alignment explanation
Indices: 46441003--46441048 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
46440993 ACCTAAAATG
46441003 TAAAATTTCCCTATAATTAGCT
1 TAAAATTTCCCTATAATTAGCT
46441025 TAAAATTTCCCTATAATTAGCT
1 TAAAATTTCCCTATAATTAGCT
46441047 TA
1 TA
46441049 CATTTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.17, G:0.04, T:0.41
Consensus pattern (22 bp):
TAAAATTTCCCTATAATTAGCT
Found at i:46452466 original size:32 final size:32
Alignment explanation
Indices: 46452425--46452488 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
46452415 GCTTCACATG
46452425 TCAGTTTGGGGTGTGTATTAATGTAGGATGGT
1 TCAGTTTGGGGTGTGTATTAATGTAGGATGGT
46452457 TCAGTTTGGGGTGTGTATTAATGTAGGATGGT
1 TCAGTTTGGGGTGTGTATTAATGTAGGATGGT
46452489 AAGGTGGTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.19, C:0.03, G:0.38, T:0.41
Consensus pattern (32 bp):
TCAGTTTGGGGTGTGTATTAATGTAGGATGGT
Found at i:46454538 original size:48 final size:48
Alignment explanation
Indices: 46454056--46454537 Score: 687
Period size: 48 Copynumber: 10.0 Consensus size: 48
46454046 TACATGAATC
* *
46454056 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* * ** *
46454104 CACATAACATCACCGATGCCATGTCCCAGACATAGTCTTACATTGACA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* * *
46454152 CACATATCATCACCAATGTCATGTCCCAGACATGATCTTACACAGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* *
46454200 CATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* ** * *
46454248 CATATATCATCGTCGATGCCATGTCCCAGACAAGGTCTTACACTGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* *
46454296 CACATATCATCACCGATGCCATGGCCCA-AGCATGGTCTTACACTGGCA
1 CACATATCATCACCGATGCCATGTCCCAGA-CATGGTCTTACACAGGCA
* *
46454344 CACATATCATCACCGATGCCATGTCTCAAACATGGTCTTACACAGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* *
46454392 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* * *
46454440 CACATATCATCACCGATACCAAGTCCTAGACATGGTCTTACACAGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* **
46454488 CATATATCATCACCGATGCCATGTCCCAGACATGGTAGTACACAGGCA
1 CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
46454536 CA
1 CA
46454538 TTTTGCACGG
Statistics
Matches: 388, Mismatches: 44, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
47 1 0.00
48 386 0.99
49 1 0.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (48 bp):
CACATATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
Found at i:46464191 original size:55 final size:54
Alignment explanation
Indices: 46464086--46464286 Score: 205
Period size: 55 Copynumber: 3.7 Consensus size: 54
46464076 GGGTTTAAGA
* * * *
46464086 ATACCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTTTCT--AAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGACATGG-CATTGATAA-G-TTCTAGAAGGCAAGG
*
46464141 ATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTAGAAGGCAAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTAGAAGGC-AAGG
* * * *
46464197 -TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATG-AGGCAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTA-GAAGGCAAGG
* * *
46464249 ATACCATGTAAGACCATGTCGAGACATGGCAATGATAA
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGATAA
46464287 TTTCAAAAGG
Statistics
Matches: 123, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
52 6 0.05
53 38 0.31
54 9 0.07
55 66 0.54
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (54 bp):
ATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTAGAAGGCAAGG
Found at i:46464285 original size:108 final size:110
Alignment explanation
Indices: 46464089--46464286 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
46464079 TTTAAGAATA
46464089 CCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
46464154 CCATGTCAAGACATGGCATTGATAAGTTACTAGAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTAGAAGGCAAAGGTC
* * * *
46464199 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATGAGGCAAGGATACCATGTAAG
1 CCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
*
46464261 ACCATGTCGAGACATGGCAATGATAA
65 ACCATGTCAAGACATGGCAATGATAA
46464287 TTTCAAAAGG
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 25 0.31
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTAGAAGGCAAAGGTC
Found at i:46464549 original size:16 final size:16
Alignment explanation
Indices: 46464528--46464558 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46464518 ATAAATTTGA
46464528 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
46464544 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
46464559 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:46465685 original size:55 final size:53
Alignment explanation
Indices: 46465568--46465773 Score: 175
Period size: 55 Copynumber: 3.8 Consensus size: 53
46465558 GGGTTTAAGA
* * * * * * *
46465568 ATACCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTTTC-TAAGACAAGG
1 ATACCATGTAAGACCATGTCAAGACATGG-CATTGATAA-G-TTCATGAGGCAAGG
*
46465623 ATACCATGTAAGACCATGTCAAGATATGGCATTGATAAGTT-ACTAGAAGGCAAAGG
1 ATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA-T-G-AGGC-AAGG
* * * * *
46465679 -TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATGAGGCAAGG
1 ATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATGAGGCAAGG
* * * *
46465731 ATACCATGTAAGACCATGTCGAGACATAGCAATGATAATTTCA
1 ATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA
46465774 AAAGGATACC
Statistics
Matches: 121, Mismatches: 23, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
52 6 0.05
53 39 0.32
54 8 0.07
55 63 0.52
56 5 0.04
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
ATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATGAGGCAAGG
Found at i:46465744 original size:108 final size:110
Alignment explanation
Indices: 46465571--46465768 Score: 285
Period size: 108 Copynumber: 1.8 Consensus size: 110
46465561 TTTAAGAATA
46465571 CCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGACAAGGATACCATGTAAGA
1 CCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGACAAGGATACCATGTAAGA
* * *
46465636 CCATGTCAAGATATGGCATTGATAAGTTACTAGAAGGCAAAGGTC
66 CCATGTCAAGACATAGCAATGATAAGTTACTAGAAGGCAAAGGTC
* * * * *
46465681 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATGAGGCAAGGATACCATGTAAG
1 CCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTTTC-TAAGACAAGGATACCATGTAAG
*
46465743 ACCATGTCGAGACATAGCAATGATAA
65 ACCATGTCAAGACATAGCAATGATAA
46465769 TTTCAAAAGG
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 43 0.55
109 7 0.09
110 25 0.32
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGAACATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGACAAGGATACCATGTAAGA
CCATGTCAAGACATAGCAATGATAAGTTACTAGAAGGCAAAGGTC
Done.