Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 150 of 325
Found at i:48181907 original size:54 final size:54
Alignment explanation
Indices: 48181801--48181907 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
48181791 AGGAAGCGTC
* * *
48181801 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
* * *
48181855 CTGGTGGCTCTGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCTGT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTGT
48181908 CTTGGCAGCC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 29 0.63
55 17 0.37
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
Found at i:48183699 original size:46 final size:45
Alignment explanation
Indices: 48183642--48183811 Score: 168
Period size: 46 Copynumber: 3.7 Consensus size: 45
48183632 GAGTTCCGAA
*
48183642 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATGCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACACGCGAG
* * * * *
48183688 CTCATTGAGTTGAGTCCGAG-T---TTGTGAGATGTAACTAGGCATCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGGAAC-A--C-GC-GAG
* *
48183735 CTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGAGAACACCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACACGCGAG
48183781 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48183812 GTGGGTTACA
Statistics
Matches: 100, Mismatches: 13, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
42 7 0.07
43 5 0.05
45 1 0.01
46 52 0.52
47 21 0.21
48 2 0.02
50 5 0.05
51 7 0.07
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACACGCGAG
Found at i:48186018 original size:27 final size:27
Alignment explanation
Indices: 48185979--48186118 Score: 126
Period size: 27 Copynumber: 5.2 Consensus size: 27
48185969 GGAAGCGTCT
*
48185979 TGGTGGCTATGCCAAAATTATCTAATC
1 TGGTGGCTCTGCCAAAATTATCTAATC
* *
48186006 TGGTGGCTCTGCC-ACATATATCT-GTCC
1 TGGTGGCTCTGCCAAAAT-TATCTAAT-C
* * *
48186033 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCAAAATTATCTAATC
* **
48186060 TGGTGGCTCTGCC-ACATATATCTGTTC
1 TGGTGGCTCTGCCAAAAT-TATCTAATC
*
48186087 TGGTGGCTCTGCCACAA-TATCTATATC
1 TGGTGGCTCTGCCAAAATTATCTA-ATC
48186114 TGGTG
1 TGGTG
48186119 ACTTCGTCAC
Statistics
Matches: 91, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
26 11 0.12
27 76 0.84
28 4 0.04
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
TGGTGGCTCTGCCAAAATTATCTAATC
Found at i:48186061 original size:54 final size:54
Alignment explanation
Indices: 48185979--48186118 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 54
48185969 GGAAGCGTCT
*
48185979 TGGTGGCTATGCCAAAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCC
1 TGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCC
* *
48186033 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTC
1 TGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCC
*
48186087 TGGTGGCTCTGCCACAA-TATCTATATCTGGTG
1 TGGTGGCTATGCCACAATTATCTA-ATCTGGTG
48186119 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 75 0.94
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTCC
Found at i:48195396 original size:10 final size:10
Alignment explanation
Indices: 48195381--48195410 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
48195371 AAAATTCATT
48195381 ATTTCCTTTC
1 ATTTCCTTTC
*
48195391 ATTTCCATTC
1 ATTTCCTTTC
48195401 ATTTCCTTTC
1 ATTTCCTTTC
48195411 TCATCCTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.13, C:0.30, G:0.00, T:0.57
Consensus pattern (10 bp):
ATTTCCTTTC
Found at i:48200674 original size:27 final size:27
Alignment explanation
Indices: 48200636--48200687 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
48200626 ATGTTTGCTC
*
48200636 GTGTTTAGCCTCGTACCCTATTCCTTT
1 GTGTTTAGCCTCGTACCCTACTCCTTT
48200663 GTGTTTAGCCTCGTACCCTACTCCT
1 GTGTTTAGCCTCGTACCCTACTCCT
48200688 ACGTCAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.12, C:0.33, G:0.15, T:0.40
Consensus pattern (27 bp):
GTGTTTAGCCTCGTACCCTACTCCTTT
Found at i:48202949 original size:93 final size:93
Alignment explanation
Indices: 48202842--48203012 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
48202832 GCCCCTAAAT
* * *
48202842 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
48202907 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
48202935 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
48203000 CGAGTTCGGATGC
66 CGAGTTCGGATGC
48203013 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:48203009 original size:46 final size:45
Alignment explanation
Indices: 48202837--48203009 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 45
48202827 AACCCGCCCC
* * *
48202837 TAAATGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAATGAACTCGGACTCAACTCAACGAGTTCGGACATTC-CATCCA
* * *
48202883 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCTAGTTACA
1 TAAATGAACTCGGACTCAACTCAACGAGTTCGGACATTCC-A--TCCA
** *
48202929 TTTCACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAATGAACTCGGACTCAACTCAACGAGTTCGGACATTC-CATCCA
*
48202976 TAAATGAACTCGGACTCAACTCCACGAGTTCGGA
1 TAAATGAACTCGGACTCAACTCAACGAGTTCGGA
48203010 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 64 0.61
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAATGAACTCGGACTCAACTCAACGAGTTCGGACATTCCATCCA
Found at i:48203467 original size:30 final size:30
Alignment explanation
Indices: 48203433--48203492 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
48203423 ATTTAATACG
*
48203433 AACTTTGGAAAAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
48203463 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
48203493 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:48209636 original size:92 final size:92
Alignment explanation
Indices: 48209525--48209694 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
48209515 GCCCCTAAGT
* *
48209525 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48209590 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
48209617 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48209682 CGAGTTCGGATGC
66 CGAGTTCGGATGC
48209695 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:48209691 original size:46 final size:46
Alignment explanation
Indices: 48209520--48209691 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
48209510 AACCCGCCCC
* * *
48209520 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
48209566 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
48209612 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
48209658 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
48209692 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 95 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:48209710 original size:46 final size:46
Alignment explanation
Indices: 48209522--48209710 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
48209512 CCCGCCCCTA
* ** * *
48209522 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
48209567 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
48209615 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
48209660 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
48209706 AGTGA
1 AGTGA
48209711 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:48210142 original size:30 final size:30
Alignment explanation
Indices: 48210108--48210167 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
48210098 ATTTAATATG
48210108 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
48210138 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
48210168 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:48215302 original size:46 final size:45
Alignment explanation
Indices: 48215164--48215330 Score: 149
Period size: 46 Copynumber: 3.6 Consensus size: 45
48215154 GGGTTATTGT
* * * * *
48215164 GAGCTAGTGTAAGACATGTCTGGGACATTCATTGGCC-ACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTA-A-GACGA
* *
48215210 GAGCCAGTGTAAGACTATTTCTGGGACATGGCATCGGCATTAAGACGA
1 GAGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC-CTAAGACGA
* * * *
48215258 GTGCTAGTGTAAGACATGTCTGAGACATGCATCGGCCGTGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TAAGACG-A
*
48215305 -AGCCAGTGTAAGACATATCTGGGACA
1 GAGCCAGTGTAAGACATGTCTGGGACA
48215331 AGTATCAATT
Statistics
Matches: 98, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
46 50 0.51
47 24 0.24
48 22 0.22
49 1 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTAAGACGA
Found at i:48222897 original size:47 final size:44
Alignment explanation
Indices: 48222824--48222992 Score: 148
Period size: 45 Copynumber: 3.7 Consensus size: 44
48222814 GGGTTATTCT
*
48222824 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGACCACATT-ATGA-
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG---ACATTGA-GAC
* *
48222870 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATTGAGAC
* * *
48222916 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAACCTCGA-AC
1 GA--GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGAC
*
48222961 GTAAGCCAGTGTAAGACATGAT-TGGGACATGC
1 G--AGCTAGTGTAAGACATG-TCTGGGACATGC
48222993 GTCGGCTACG
Statistics
Matches: 105, Mismatches: 9, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
45 34 0.32
46 26 0.25
47 28 0.27
48 17 0.16
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (44 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGAC
Found at i:48234440 original size:49 final size:50
Alignment explanation
Indices: 48234387--48234665 Score: 226
Period size: 50 Copynumber: 5.6 Consensus size: 50
48234377 CTGGTATGAA
*
48234387 TAGTAGCCTGCACTTAGTACTACGCATGTGACC-AAAAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATCTGGTACACG
* ** * **
48234436 TAGTAGCCTACACTTAGTACTACACATGTGACCTAACCATTTTATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATCTGGTACACG
* * * * ** * * *
48234486 TAGTTGCCTGCACTTAGTACTACACACGTGA-TTGAAGTTGTTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAAT-CT-GGTACACG
* * **
48234537 TAGTAGCCTGCACTTAGTATTACACATGTAACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATCTGGTACACG
* * *** * *
48234587 TAGTTGCCTGCAC-T--TACTACACACGTGACCTAAAACCATCTTAAAGACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAA--ATCTGGTACACG
* *
48234636 TAGTAGCCTGCACATATTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
48234666 TTCCCACAAT
Statistics
Matches: 177, Mismatches: 44, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
47 16 0.09
49 54 0.31
50 60 0.34
51 32 0.18
52 15 0.08
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAAAAATCTGGTACACG
Found at i:48234624 original size:150 final size:149
Alignment explanation
Indices: 48234386--48234661 Score: 367
Period size: 150 Copynumber: 1.8 Consensus size: 149
48234376 TCTGGTATGA
* *
48234386 ATAGTAGCCTGCACTTAGTACTACGCATGTGACCAAAAATCTGGTACACGTAGTAGCCTACACTT
1 ATAGTAGCCTGCACTTAGTACTACACATGTAACCAAAAATCTGGTACACGTAGTAGCCTACACTT
* * * * * *
48234451 AGTACTACACATGTGACCTAACCATTTTATACACGTAGTTGCCTGCACTTAGTACTACACACGTG
66 A-TACTACACACGTGACCTAACCATCTTAAACACATAGTAGCCTGCACATAGTACTACACACGTG
48234516 ATTGAAGTTGTTGGGTACGC
130 ATTGAAGTTGTTGGGTACGC
* ** * *
48234536 ATAGTAGCCTGCACTTAGTATTACACATGTAACCTAACTATCTGGTACACGTAGTTGCCTGCAC-
1 ATAGTAGCCTGCACTTAGTACTACACATGTAACC-AAAAATCTGGTACACGTAGTAGCCTACACT
* *
48234600 T-TACTACACACGTGACCTAAAACCATCTTAAAGACATAGTAGCCTGCACATATTACTACACA
65 TATACTACACACGTGACCT--AACCATCTTAAACACATAGTAGCCTGCACATAGTACTACACA
48234662 TGTGTTCCCA
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
148 16 0.15
150 67 0.62
151 25 0.23
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (149 bp):
ATAGTAGCCTGCACTTAGTACTACACATGTAACCAAAAATCTGGTACACGTAGTAGCCTACACTT
ATACTACACACGTGACCTAACCATCTTAAACACATAGTAGCCTGCACATAGTACTACACACGTGA
TTGAAGTTGTTGGGTACGC
Found at i:48239694 original size:30 final size:30
Alignment explanation
Indices: 48239658--48239752 Score: 127
Period size: 30 Copynumber: 3.2 Consensus size: 30
48239648 CAGTCAGGCT
*
48239658 ACACGCTCATGTCACCAGGCCGTGTCCCTC
1 ACACGCTCGTGTCACCAGGCCGTGTCCCTC
* ** *
48239688 ATACGCTCGTGTCACCAGGATGTATCCCTC
1 ACACGCTCGTGTCACCAGGCCGTGTCCCTC
* *
48239718 ACACGCTTGTGTCACTAGGCCGTGTCCCTC
1 ACACGCTCGTGTCACCAGGCCGTGTCCCTC
48239748 ACACG
1 ACACG
48239753 GTTGAGACAT
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.18, C:0.38, G:0.21, T:0.23
Consensus pattern (30 bp):
ACACGCTCGTGTCACCAGGCCGTGTCCCTC
Found at i:48239769 original size:30 final size:30
Alignment explanation
Indices: 48239674--48239773 Score: 85
Period size: 30 Copynumber: 3.3 Consensus size: 30
48239664 TCATGTCACC
* * * * *
48239674 AGGCCGTGTCCCTCATACGCTCGTGTCACC
1 AGGCCGTGTCCCTCACACGCTTGAGACACT
** * * *
48239704 AGGATGTATCCCTCACACGCTTGTGTCACT
1 AGGCCGTGTCCCTCACACGCTTGAGACACT
*
48239734 AGGCCGTGTCCCTCACACGGTTGAGACA-T
1 AGGCCGTGTCCCTCACACGCTTGAGACACT
48239763 ACGGCCGTGTC
1 A-GGCCGTGTC
48239774 TCATCCATAT
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
29 2 0.04
30 55 0.96
ACGTcount: A:0.17, C:0.34, G:0.25, T:0.24
Consensus pattern (30 bp):
AGGCCGTGTCCCTCACACGCTTGAGACACT
Found at i:48242001 original size:96 final size:97
Alignment explanation
Indices: 48241835--48242107 Score: 266
Period size: 101 Copynumber: 2.8 Consensus size: 97
48241825 CTGGTATGCA
* * * *
48241835 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATCTGGTACACGTAGTAGGCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCGGGTACACATAGTAGCCTGCACTTA
* *
48241900 GTACTACACACGTGA-C-C-ATTTTATACACG
66 GTACTACACACGTGACCACAATCTGATACACG
** * *
48241929 TAGTAGCCTGCACTTAGTACTACACACGTGATTAA-AGTTGTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACA---ATCGGGTACACATAGTAGCCTGCAC
* *
48241993 TTAGTACTACACATGTGACCTAACAATCTGGTACACG
63 TTAGTACTACACACGTGACC--ACAATCTGATACACG
* * **** *
48242030 TTGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACATAGTATCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC---AACAATCGGGTACACATAGTAGCCTGCAC
*
48242095 ATAGTACTACACA
63 TTAGTACTACACA
48242108 TGTGTTCTCA
Statistics
Matches: 143, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
93 1 0.01
94 32 0.22
96 37 0.26
97 1 0.01
100 1 0.01
101 39 0.27
102 30 0.21
104 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (97 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGTGACCACAATCTGATACACG
Found at i:48242047 original size:50 final size:50
Alignment explanation
Indices: 48241835--48242107 Score: 274
Period size: 50 Copynumber: 5.5 Consensus size: 50
48241825 CTGGTATGCA
*
48241835 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * **
48241884 TAGTAGGCTGCACTTAGTACTACACACGTGA-C---C-ATTTTATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * * * *
48241929 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTAA-AGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACA---ATCTGGTACACG
*
48241980 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * *** *
48242030 TTGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACAATCTGGTACACG
* *
48242082 TAGTATCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
48242108 TGTGTTCTCA
Statistics
Matches: 183, Mismatches: 30, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
45 39 0.21
46 1 0.01
48 1 0.01
49 29 0.16
50 40 0.22
51 35 0.19
52 37 0.20
53 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
Found at i:48245686 original size:6 final size:6
Alignment explanation
Indices: 48245668--48245780 Score: 72
Period size: 6 Copynumber: 18.3 Consensus size: 6
48245658 AAGAAACATT
* *
48245668 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * * *
48245717 ATCAGT ATCAGGTA ACCA-A ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
*
48245767 ATCAAA ATCAGA AT
1 ATCAGA ATCAGA AT
48245781 GTGAATACAA
Statistics
Matches: 83, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
5 8 0.10
6 63 0.76
7 7 0.08
8 5 0.06
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:48245712 original size:31 final size:31
Alignment explanation
Indices: 48245679--48245780 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
48245669 TCAGAACTAG
* * * *
48245679 AATCAGAATCAGAATTAGGTGACAGAATCAG
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
48245710 AATCAGAATCAGTATCAGGTAACCA-AATCAA
1 AATCAGAATCAGTATCAGGTAA-CAGAATCAA
48245741 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
48245772 AATCAGAAT
1 AATCAGAAT
48245781 GTGAATACAA
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
30 2 0.03
31 61 0.94
32 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:48245969 original size:27 final size:26
Alignment explanation
Indices: 48245900--48245985 Score: 93
Period size: 27 Copynumber: 3.2 Consensus size: 26
48245890 AGCATGGCTT
* *
48245900 CCAGAACAAATATTGTGACAGAGTCA
1 CCAGAACAAATATTGTGGCAGAGCCA
* *
48245926 CCA-AATGCAGATATTGTGGTAGAGCCA
1 CCAGAA--CAAATATTGTGGCAGAGCCA
*
48245953 CCAGAACAAATATTTGTGGCATAGCCA
1 CCAGAACAAATA-TTGTGGCAGAGCCA
48245980 CCAGAA
1 CCAGAA
48245986 TTAGATAATG
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
25 2 0.04
26 8 0.16
27 37 0.76
28 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.20
Consensus pattern (26 bp):
CCAGAACAAATATTGTGGCAGAGCCA
Found at i:48245992 original size:54 final size:53
Alignment explanation
Indices: 48245900--48246007 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 53
48245890 AGCATGGCTT
* * * *
48245900 CCAGAACAAATATTGTGACAGAGTCACCAAATGCAGATATTGTGGTAGAGCCA
1 CCAGAACAAATATTGTGACAGAGCCACCAAATGCAGATAATGTGGCAAAGCCA
* * *
48245953 CCAGAACAAATATTTGTGGCATAGCCACCAGAAT-TAGATAATGTGGCAAAGCCA
1 CCAGAACAAATA-TTGTGACAGAGCCACCA-AATGCAGATAATGTGGCAAAGCCA
48246007 C
1 C
48246008 TTAACAGGAT
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
53 12 0.26
54 31 0.67
55 3 0.07
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.20
Consensus pattern (53 bp):
CCAGAACAAATATTGTGACAGAGCCACCAAATGCAGATAATGTGGCAAAGCCA
Found at i:48246627 original size:27 final size:27
Alignment explanation
Indices: 48246598--48246791 Score: 223
Period size: 27 Copynumber: 7.2 Consensus size: 27
48246588 GGTATCTCGG
*
48246598 TAATTCCACCCTACAGGGGTATTTTAG-
1 TAATTCTACCCTACAGGGGTA-TTTAGA
* *
48246625 TAATTCTACCCTACTGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTAGA
* *
48246652 AAATTCTACCCTACAAGGGTA-TTACGA
1 TAATTCTACCCTACAGGGGTATTTA-GA
* *
48246679 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTAGA
* **
48246706 TAATTCTACCCTATAGGGGTATTGCGA
1 TAATTCTACCCTACAGGGGTATTTAGA
*
48246733 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTAGA
* *
48246760 TAATTTTACCCTACAGGAGTATTTCAG-
1 TAATTCTACCCTACAGGGGTATTT-AGA
48246787 TAATT
1 TAATT
48246792 GGGTATTTCG
Statistics
Matches: 144, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.04
27 135 0.94
28 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTAGA
Found at i:48246664 original size:54 final size:54
Alignment explanation
Indices: 48246571--48247095 Score: 600
Period size: 54 Copynumber: 10.0 Consensus size: 54
48246561 GGGCAAAATG
* * * * *
48246571 GTAATTTTACCCAACA-AGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
* ** *
48246624 GTAATTCTACCCTACTGGGGTATTTCGAAAATTCTACCCTACAAGGGTA--TTA
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
* **
48246676 CGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTA-TTGC
1 -G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
* * * *
48246731 GATAATTCTACCCTACAGGGGTATTTCGATAATTTTACCCTACAGGAGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
**
48246786 GTAA---T----T----GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
* * **
48246829 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTA-TTGC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
* **
48246882 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
* * ** *
48246937 GTAATTCTACCCTATAGGGGTATTGCAATAATTCTACCCTACAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
48246991 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACA-GGGTATTTT-
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
*
48247043 GATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGAGGTATTT
1 G-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
48247096 CGGTAATTTT
Statistics
Matches: 407, Mismatches: 45, Indels: 39
0.83 0.09 0.08
Matches are distributed among these distances:
43 37 0.09
46 1 0.00
47 1 0.00
50 1 0.00
51 1 0.00
52 4 0.01
53 68 0.17
54 287 0.71
55 7 0.02
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTA
Found at i:48246712 original size:81 final size:81
Alignment explanation
Indices: 48246588--48247103 Score: 725
Period size: 81 Copynumber: 6.5 Consensus size: 81
48246578 TACCCAACAA
* * ** *
48246588 GGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTACCCTACT-GGGGTATTTCGA
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTA-TAGGGGTATTGCGA
* *
48246652 AAATTCTACCCTACAAG
65 TAATTCTACCCTACAGG
* *
48246669 GGTATTACGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGAT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGAT
48246734 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
* * * * * *
48246750 GGTATTTCGATAATTTTACCCTACAGGAGTATTTCAGT-A----A---T-T--GGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGAT
48246804 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
*
48246820 GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGAT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGAT
48246885 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
* *
48246901 GGTATTTCGGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCAAT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGAT
48246966 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
* * **
48246982 GGTATTTTGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACA-GGGTATTTTGAT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGAT
48247046 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
*
48247062 GGTATTTCGGTAATTCTACCCTACAGAGGTATTTCGGTAATT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATT
48247104 TTATAAACAA
Statistics
Matches: 392, Mismatches: 31, Indels: 25
0.88 0.07 0.06
Matches are distributed among these distances:
70 59 0.15
71 1 0.00
72 1 0.00
73 1 0.00
75 1 0.00
76 1 0.00
78 1 0.00
79 1 0.00
80 67 0.17
81 259 0.66
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGAT
AATTCTACCCTACAGG
Found at i:48246813 original size:43 final size:43
Alignment explanation
Indices: 48246749--48246834 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
48246739 TACCCTACAG
*
48246749 GGGTATTTCGATAATTTTACCCTACAGGAGTATTTCAGTAATT
1 GGGTATTTCGATAATTCTACCCTACAGGAGTATTTCAGTAATT
* * *
48246792 GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATT
1 GGGTATTTCGATAATTCTACCCTACAGGAGTATTTCAGTAATT
48246835 CTACCCTACA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.38
Consensus pattern (43 bp):
GGGTATTTCGATAATTCTACCCTACAGGAGTATTTCAGTAATT
Found at i:48246830 original size:27 final size:27
Alignment explanation
Indices: 48246792--48247103 Score: 500
Period size: 27 Copynumber: 11.6 Consensus size: 27
48246782 TTCAGTAATT
48246792 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
48246819 GGGTATTTCGGTAATTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
*
48246846 GGGTATTTCGGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
48246873 GGGTATTGCGATAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
48246900 GGGTATTTCGGTAATTCTACCCTACAA
1 GGGTATTTCGGTAATTCTACCCTACAG
*
48246927 GGGTATTTCGGTAATTCTACCCTATAG
1 GGGTATTTCGGTAATTCTACCCTACAG
* **
48246954 GGGTATTGCAATAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
48246981 GGGTATTTTGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
48247008 GGGTATTTCGGTAATTCTACCCTACA-
1 GGGTATTTCGGTAATTCTACCCTACAG
* *
48247034 GGGTATTTTGATAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
48247061 GGGTATTTCGGTAATTCTACCCTACAG
1 GGGTATTTCGGTAATTCTACCCTACAG
*
48247088 AGGTATTTCGGTAATT
1 GGGTATTTCGGTAATT
48247104 TTATAAACAA
Statistics
Matches: 259, Mismatches: 25, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
26 24 0.09
27 235 0.91
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGGTATTTCGGTAATTCTACCCTACAG
Found at i:48247162 original size:27 final size:27
Alignment explanation
Indices: 48247132--48247215 Score: 132
Period size: 27 Copynumber: 3.1 Consensus size: 27
48247122 TCAGTAGTTT
*
48247132 TATAAATCGAGAGTAAAATGGTAATTC
1 TATAAATCGAGGGTAAAATGGTAATTC
*
48247159 TATAAATCGAGGGTAAAACGGTAATTC
1 TATAAATCGAGGGTAAAATGGTAATTC
* *
48247186 TGTAAATTGAGGGTAAAATGGTAATTC
1 TATAAATCGAGGGTAAAATGGTAATTC
48247213 TAT
1 TAT
48247216 CTTACAAGAG
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.31
Consensus pattern (27 bp):
TATAAATCGAGGGTAAAATGGTAATTC
Found at i:48247266 original size:27 final size:27
Alignment explanation
Indices: 48247225--48247327 Score: 120
Period size: 27 Copynumber: 3.8 Consensus size: 27
48247215 TCTTACAAGA
*
48247225 GTATTTCAGTCATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
48247252 GTATTTCAGTAATTTTGCAAA-CTAAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
*
48247279 GTATTTCGGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
48247306 ATATTT-AGGTAATTTTATAAAT
1 GTATTTCA-GTAATTTTACAAAT
48247328 TGGGGGTACT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.02
27 62 0.97
28 1 0.02
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:48247343 original size:27 final size:27
Alignment explanation
Indices: 48247236--48247347 Score: 113
Period size: 27 Copynumber: 4.1 Consensus size: 27
48247226 TATTTCAGTC
48247236 ATTTTACAAATCGAGGGTATTTCA-GTA
1 ATTTTACAAATCGAGGGTATTT-AGGTA
* * *
48247263 ATTTTGCAAA-CTAAGGGTATTTCGGTA
1 ATTTTACAAATC-GAGGGTATTTAGGTA
*
48247290 ATTTTACAAATCGAGGATATTTAGGTA
1 ATTTTACAAATCGAGGGTATTTAGGTA
* * *
48247317 ATTTTATAAATTGGGGGTACTTT-GGTA
1 ATTTTACAAATCGAGGGTA-TTTAGGTA
48247344 ATTT
1 ATTT
48247348 GGTAAACTAA
Statistics
Matches: 70, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
26 1 0.01
27 65 0.93
28 4 0.06
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
ATTTTACAAATCGAGGGTATTTAGGTA
Found at i:48249484 original size:6 final size:6
Alignment explanation
Indices: 48249475--48249554 Score: 56
Period size: 6 Copynumber: 13.0 Consensus size: 6
48249465 AATTAGGTGA
* * * *
48249475 CAGAAT CAGAAT CAGAAT CAGTAT GAGGTAA- CCGAAT CAAAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
* *
48249524 CAGTAT CAAGTAA- CAGAAT CAAAAT CAGAAT
1 CAGAAT C-AG-AAT CAGAAT CAGAAT CAGAAT
48249555 GTGAATATAA
Statistics
Matches: 56, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
5 4 0.07
6 46 0.82
7 4 0.07
8 2 0.04
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:48249512 original size:31 final size:31
Alignment explanation
Indices: 48249474--48249554 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
48249464 GAATTAGGTG
* * *
48249474 ACAGAATCAGAATCAGAATCAGTATGAGGTA
1 ACAGAATCAAAATCAGAATCAGTATCAAGTA
*
48249505 ACCGAATCAAAATCAGAATCAGTATCAAGTA
1 ACAGAATCAAAATCAGAATCAGTATCAAGTA
48249536 ACAGAATCAAAATCAGAAT
1 ACAGAATCAAAATCAGAAT
48249555 GTGAATATAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (31 bp):
ACAGAATCAAAATCAGAATCAGTATCAAGTA
Found at i:48249711 original size:27 final size:26
Alignment explanation
Indices: 48249674--48249781 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 26
48249664 TGCATGGTTG
* * *
48249674 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAAAGCCA
48249700 CCAGATACAGATATTGTGGCAAAGCCA
1 CCAGA-ACAGATATTGTGGCAAAGCCA
* *
48249727 CCAGAACAAATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAAAGCCA
*
48249754 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAAAGCCA
48249781 C
1 C
48249782 TTAACAGAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 11 0.15
27 55 0.77
28 5 0.07
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:48249972 original size:22 final size:22
Alignment explanation
Indices: 48249940--48249997 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
48249930 TAAATACGTT
*
48249940 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * * *
48249962 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAAGA
48249984 TGGCACAAAGCCAT
1 TGGCACAAAGCCAT
48249998 CGATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:48250042 original size:20 final size:20
Alignment explanation
Indices: 48250014--48250054 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
48250004 CGGGTCTATA
*
48250014 ATCGGTACGAAGCCCACAAT
1 ATCGATACGAAGCCCACAAT
*
48250034 ATCGATACGAAGCCCATAAT
1 ATCGATACGAAGCCCACAAT
48250054 A
1 A
48250055 ACGGCACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.39, C:0.27, G:0.17, T:0.17
Consensus pattern (20 bp):
ATCGATACGAAGCCCACAAT
Found at i:48250401 original size:27 final size:27
Alignment explanation
Indices: 48250367--48250693 Score: 456
Period size: 27 Copynumber: 12.1 Consensus size: 27
48250357 ACAAGGCATC
*
48250367 TCGGTAATTCCACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*** *
48250394 TTATTAATTTTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
48250421 TCGGTAATTCAACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
48250448 GCGATAATTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * * *
48250475 TCAGTAATTCTACCGTATAGAGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
48250502 TTGGTAATTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
48250529 GCGATAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
48250556 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
48250583 TCGGTAATTCTACCCTACAGAGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
48250610 GCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
48250637 TCGGTAGTTCTACCCTACTGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
48250664 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
48250691 TCG
1 TCG
48250694 ATATTTTGTA
Statistics
Matches: 257, Mismatches: 43, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 257 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
TCGGTAATTCTACCCTACAGGGGTATT
Found at i:48250739 original size:27 final size:26
Alignment explanation
Indices: 48250684--48250741 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
48250674 TACCCTACAG
*
48250684 GGGTATTTCGATATTTTGTAAACCAA
1 GGGTATTTCAATATTTTGTAAACCAA
* *
48250710 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAAT-ATTTTGTAAACCAA
48250737 GGGTA
1 GGGTA
48250742 AAATGGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (26 bp):
GGGTATTTCAATATTTTGTAAACCAA
Found at i:48250807 original size:27 final size:27
Alignment explanation
Indices: 48250720--48250808 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
48250710 GGGTATTTCA
48250720 ATAATT-TTGTAAATCGAGGGTAAAATG
1 ATAATTCTT-TAAATCGAGGGTAAAATG
* * *
48250747 GTAATTCTATAAATCGAGGGTAAAACG
1 ATAATTCTTTAAATCGAGGGTAAAATG
48250774 ATAATTCTTTAAATCGAGGGTAAAATG
1 ATAATTCTTTAAATCGAGGGTAAAATG
*
48250801 CTAATTCT
1 ATAATTCT
48250809 ATCTTACAAG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (27 bp):
ATAATTCTTTAAATCGAGGGTAAAATG
Found at i:48250861 original size:27 final size:26
Alignment explanation
Indices: 48250831--48250941 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
48250821 TATTTCAATC
48250831 ATTTTACAAATCGAGGGTATTTTAGTA
1 ATTTTACAAATCGAGGGTA-TTTAGTA
* **
48250858 ATTTTGCAAA-CTGAGGGTATTCGGTA
1 ATTTTACAAATC-GAGGGTATTTAGTA
*
48250884 ATTTTACAAATCGAGGATATTTAGGTA
1 ATTTTACAAATCGAGGGTATTTA-GTA
* *
48250911 ATTTTATAAATCGGGGGTACTTTAGTA
1 ATTTTACAAATCGAGGGTA-TTTAGTA
48250938 ATTT
1 ATTT
48250942 GGTAAACCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 23 0.33
27 43 0.61
28 4 0.06
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTTACAAATCGAGGGTATTTAGTA
Found at i:48253078 original size:6 final size:6
Alignment explanation
Indices: 48253069--48253148 Score: 56
Period size: 6 Copynumber: 13.0 Consensus size: 6
48253059 AATTAGGTGA
* * * *
48253069 CAGAAT CAGAAT CAGAAT CAGTAT GAAGTAA- CCGAAT CAAAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT -CAG-AAT CAGAAT CAGAAT CAGAAT
* *
48253118 CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT
1 CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
48253149 GTGAATATAA
Statistics
Matches: 56, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
5 4 0.07
6 45 0.80
7 5 0.09
8 2 0.04
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:48253106 original size:31 final size:31
Alignment explanation
Indices: 48253068--48253148 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
48253058 GAATTAGGTG
* *
48253068 ACAGAATCAGAATCAGAATCAGTATGAAGTA
1 ACAGAATCAAAATCAGAATCAGTATCAAGTA
* *
48253099 ACCGAATCAAAATCAGAATCAGTATCAGGTA
1 ACAGAATCAAAATCAGAATCAGTATCAAGTA
48253130 ACAGAATCAAAATCAGAAT
1 ACAGAATCAAAATCAGAAT
48253149 GTGAATATAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (31 bp):
ACAGAATCAAAATCAGAATCAGTATCAAGTA
Found at i:48253304 original size:27 final size:26
Alignment explanation
Indices: 48253267--48253374 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 26
48253257 TGCATGGTTG
* * *
48253267 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAAAGCCA
48253293 CCAGATACAGATATTGTGGCAAAGCCA
1 CCAGA-ACAGATATTGTGGCAAAGCCA
* *
48253320 CCAGAACAAATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAAAGCCA
*
48253347 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGGCAAAGCCA
48253374 C
1 C
48253375 TTAACAGAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 11 0.15
27 55 0.77
28 5 0.07
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAAAGCCA
Found at i:48253565 original size:22 final size:22
Alignment explanation
Indices: 48253533--48253590 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
48253523 TAAATACGTT
*
48253533 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * * *
48253555 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAAGA
48253577 TGGCACAAAGCCAT
1 TGGCACAAAGCCAT
48253591 CGATAACGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:48253635 original size:20 final size:20
Alignment explanation
Indices: 48253607--48253647 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
48253597 CGGGTCTATA
*
48253607 ATCGGTACGAAGCCCACAAT
1 ATCGATACGAAGCCCACAAT
*
48253627 ATCGATACGAAGCCCATAAT
1 ATCGATACGAAGCCCACAAT
48253647 A
1 A
48253648 ACGGCACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.39, C:0.27, G:0.17, T:0.17
Consensus pattern (20 bp):
ATCGATACGAAGCCCACAAT
Found at i:48253993 original size:27 final size:27
Alignment explanation
Indices: 48253959--48254345 Score: 513
Period size: 27 Copynumber: 14.3 Consensus size: 27
48253949 ACAAGGCACC
*
48253959 TCGGTAATTCCACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
** * *
48253986 TTAGTAATTTTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
48254013 TCAGTAATTCAACCTTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
48254040 GCGATAATTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * * *
48254067 TCAGTAATTCTACCGTATAGAGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
48254094 TTGGTAATTCTACCCTACACGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
48254121 GCGATAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
48254148 TCGGTAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
48254175 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * * *
48254202 GCGATAATTCTACCCAATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
48254229 TCGGTAATTCTACCCTCCAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
48254256 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
48254283 GCGATAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
48254310 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
48254337 TCGATAATT
1 TCGGTAATT
48254346 TTGTAAACCA
Statistics
Matches: 308, Mismatches: 52, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 308 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
TCGGTAATTCTACCCTACAGGGGTATT
Found at i:48254360 original size:27 final size:27
Alignment explanation
Indices: 48254330--48254388 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
48254320 TACCCTACAG
48254330 GGGTATTTCG-ATAATTTTGTAAACCAA
1 GGGTATTT-GAATAATTTTGTAAACCAA
* * *
48254357 GGGTATTTGAATGATTTTGTAAATCGA
1 GGGTATTTGAATAATTTTGTAAACCAA
48254384 GGGTA
1 GGGTA
48254389 AAATGGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (27 bp):
GGGTATTTGAATAATTTTGTAAACCAA
Found at i:48254363 original size:81 final size:81
Alignment explanation
Indices: 48253963--48254345 Score: 577
Period size: 81 Copynumber: 4.7 Consensus size: 81
48253953 GGCACCTCGG
* ** * * * * *
48253963 TAATTCCACCCTACAGGGGTATTTTAGTAATTTTACCCTACAAGGGTATTTCAGTAATTCAACCT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
48254028 TACAGGGGTATTGCGA
66 TACAGGGGTATTGCGA
* * * * * *
48254044 TAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCGTATAGAGGTATTTTGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
*
48254109 TACACGGGTATTGCGA
66 TACAGGGGTATTGCGA
* *
48254125 TAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
48254190 TACAGGGGTATTGCGA
66 TACAGGGGTATTGCGA
* * *
48254206 TAATTCTACCCAATAGGGGTATTTCGGTAATTCTACCCTCCAGGGGTATTTCGGTAATTCTACCC
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
48254271 TACAGGGGTATTGCGA
66 TACAGGGGTATTGCGA
*
48254287 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATT
1 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATT
48254346 TTGTAAACCA
Statistics
Matches: 275, Mismatches: 27, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 275 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
TACAGGGGTATTGCGA
Found at i:48254406 original size:27 final size:27
Alignment explanation
Indices: 48254376--48254457 Score: 146
Period size: 27 Copynumber: 3.0 Consensus size: 27
48254366 AATGATTTTG
48254376 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* *
48254403 TAAATCGAGGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
48254430 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
48254457 T
1 T
48254458 CTTACAAGAG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
TAAATCGAGGGTAAAATGGTAATTCTA
Found at i:48254540 original size:26 final size:27
Alignment explanation
Indices: 48254467--48254588 Score: 115
Period size: 27 Copynumber: 4.6 Consensus size: 27
48254457 TCTTACAAGA
* * * *
48254467 GTATTTCAGTCATTTTATAAATCGATG
1 GTATTTCGGTAATTTTACAAATCGAGG
* *
48254494 GTATTTCAGTAATTTTGCAAA-CTGAGG
1 GTATTTCGGTAATTTTACAAATC-GAGG
48254521 GTA-TTCGGTAATTTTACAAATCGAGG
1 GTATTTCGGTAATTTTACAAATCGAGG
* * * *
48254547 ATATTTAGGTAATTTTATAAATCGGGG
1 GTATTTCGGTAATTTTACAAATCGAGG
48254574 GTACTTT-GGTAATTT
1 GTA-TTTCGGTAATTT
48254589 GGTAAACTAA
Statistics
Matches: 80, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
26 22 0.28
27 55 0.69
28 3 0.04
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GTATTTCGGTAATTTTACAAATCGAGG
Found at i:48256725 original size:6 final size:6
Alignment explanation
Indices: 48256716--48256789 Score: 53
Period size: 6 Copynumber: 12.0 Consensus size: 6
48256706 AATTAGGTGA
* * * *
48256716 CAGAAT CAGAAT CAGTAT CAGGTAA- CCGAAT CAAAAT CAGAAT CAGTAT
1 CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT CAGAAT
*
48256765 CAGGTAA- CAGAAT CAAAAT CAGAAT
1 CA-G-AAT CAGAAT CAGAAT CAGAAT
48256790 GTGAATATAA
Statistics
Matches: 52, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
5 4 0.08
6 41 0.79
7 5 0.10
8 2 0.04
ACGTcount: A:0.47, C:0.18, G:0.16, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:48256738 original size:25 final size:25
Alignment explanation
Indices: 48256692--48256786 Score: 73
Period size: 25 Copynumber: 3.6 Consensus size: 25
48256682 TATCAGAACT
* * * *
48256692 AGAATTAGAATTAGAATTAGGTGAC
1 AGAATCAGAATCAGTATCAGGTGAC
48256717 AGAATCAGAATCAGTATCAGGTAACCGAATC
1 AGAATCAGAATCAGTATCAGGT----G-A-C
* *
48256748 AAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGTATCAGGTGAC
*
48256773 AGAATCAAAATCAG
1 AGAATCAGAATCAG
48256787 AATGTGAATA
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
25 31 0.55
26 1 0.02
29 1 0.02
30 1 0.02
31 22 0.39
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGTATCAGGTGAC
Found at i:48256754 original size:31 final size:31
Alignment explanation
Indices: 48256719--48256789 Score: 133
Period size: 31 Copynumber: 2.3 Consensus size: 31
48256709 TAGGTGACAG
*
48256719 AATCAGAATCAGTATCAGGTAACCGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
48256750 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
48256781 AATCAGAAT
1 AATCAGAAT
48256790 GTGAATATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.48, C:0.17, G:0.15, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:48256963 original size:27 final size:25
Alignment explanation
Indices: 48256909--48257016 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 25
48256899 TGCATGGTTG
* * * *
48256909 CCAGAACAGATATTATGACAGAGTCA
1 CCAGAACAGATA-TGTGGCAAAGCCA
48256935 CCAGATACAGATATGGTGGCAAAGCCA
1 CCAGA-ACAGATAT-GTGGCAAAGCCA
* *
48256962 CCAGAACAAATATTTGTGGCATAGCCA
1 CCAGAACAGATA--TGTGGCAAAGCCA
48256989 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGAT-ATGTGGCAAAGCCA
48257016 C
1 C
48257017 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
26 12 0.18
27 50 0.74
28 5 0.07
29 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (25 bp):
CCAGAACAGATATGTGGCAAAGCCA
Found at i:48256975 original size:53 final size:54
Alignment explanation
Indices: 48256909--48257016 Score: 132
Period size: 54 Copynumber: 2.0 Consensus size: 54
48256899 TGCATGGTTG
* *
48256909 CCAGAACAGATA-TTATGACAGAGTCACCAG-ATACAGAT-ATGGTGGCAAAGCCA
1 CCAGAACAAATATTTATGACAGAGCCACCAGAAT-CAGATAAT-GTGGCAAAGCCA
* * *
48256962 CCAGAACAAATATTTGTGGCATAGCCACCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAACAAATATTTATGACAGAGCCACCAGAATCAGATAATGTGGCAAAGCCA
48257016 C
1 C
48257017 TTAACAGAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
53 11 0.23
54 32 0.68
55 4 0.09
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (54 bp):
CCAGAACAAATATTTATGACAGAGCCACCAGAATCAGATAATGTGGCAAAGCCA
Found at i:48257099 original size:32 final size:31
Alignment explanation
Indices: 48257030--48257105 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 31
48257020 ACAGAATACG
* *
48257030 TGGCACAAAGCCATCAATAACTGTAATAACT
1 TGGCACAAAGCCATCAATAACGGTAATAAAT
* * *
48257061 TCGGCACATAGCCATCAGTGACGGTAATATAAT
1 T-GGCACAAAGCCATCAATAACGGTAATA-AAT
*
48257094 TGGCACACAGCC
1 TGGCACAAAGCC
48257106 TTCGGTAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
31 1 0.03
32 33 0.89
33 3 0.08
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (31 bp):
TGGCACAAAGCCATCAATAACGGTAATAAAT
Found at i:48257207 original size:22 final size:22
Alignment explanation
Indices: 48257175--48257230 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
48257165 TAAATACGTT
*
48257175 TGGCACGAAGCCATAGTCAAGA
1 TGGCACAAAGCCATAGTCAAGA
* * * *
48257197 TGGCACAAAGCCATATTTAGGT
1 TGGCACAAAGCCATAGTCAAGA
48257219 TGGCACAAAGCC
1 TGGCACAAAGCC
48257231 GTCGATAACG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.18
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAAGA
Found at i:48257277 original size:20 final size:20
Alignment explanation
Indices: 48257249--48257289 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
48257239 CGGGTCTATA
*
48257249 ATCGGTACGAAGCCCACAAT
1 ATCGATACGAAGCCCACAAT
*
48257269 ATCGATACGAAGCCCATAAT
1 ATCGATACGAAGCCCACAAT
48257289 A
1 A
48257290 ACGGCACACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.39, C:0.27, G:0.17, T:0.17
Consensus pattern (20 bp):
ATCGATACGAAGCCCACAAT
Found at i:48257636 original size:27 final size:27
Alignment explanation
Indices: 48257602--48257934 Score: 461
Period size: 27 Copynumber: 12.3 Consensus size: 27
48257592 ACAAGGCATC
*
48257602 TCGGTAATTCCACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
** *
48257629 TTAGTAATTTTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
48257656 TCGGTAATT-TAACCCTACAGGGGTATT
1 TCGGTAATTCT-ACCCTACAGGGGTATT
* * *
48257683 GCGATAATTCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * * *
48257710 TCAGTAATTCTACCGTATAGAGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
48257737 TTGGTAATTCTACCCTGCAAGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* * *
48257764 GCGATAATTCTACCCTATAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
48257791 TCGGTAATTCTACCCTACAGAGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
48257818 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
* *
48257845 GCGATAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
48257872 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
48257899 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCCTACAGGGGTATT
*
48257926 TCGATAATT
1 TCGGTAATT
48257935 TTGTAAACCA
Statistics
Matches: 265, Mismatches: 39, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
26 1 0.00
27 263 0.99
28 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (27 bp):
TCGGTAATTCTACCCTACAGGGGTATT
Found at i:48257949 original size:27 final size:27
Alignment explanation
Indices: 48257919--48257977 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
48257909 TACCCTACAG
*
48257919 GGGTATTTCGATAATTTTGTAAACCAA
1 GGGTATTTCAATAATTTTGTAAACCAA
* *
48257946 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAATAATTTTGTAAACCAA
48257973 GGGTA
1 GGGTA
48257978 AAATGGTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.37
Consensus pattern (27 bp):
GGGTATTTCAATAATTTTGTAAACCAA
Found at i:48257987 original size:27 final size:27
Alignment explanation
Indices: 48257957--48258044 Score: 149
Period size: 27 Copynumber: 3.3 Consensus size: 27
48257947 GGTATTTCAA
*
48257957 TAATTTTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
* *
48257984 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
48258011 TAATTCTGTAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAATGG
48258038 TAATTCT
1 TAATTCT
48258045 ATCTTACAAG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.32
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAATGG
Found at i:48257988 original size:54 final size:54
Alignment explanation
Indices: 48257938--48258046 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
48257928 GATAATTTTG
*** *
48257938 TAAACCAAGGGTATTTCAATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTA
1 TAAACCAAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
* * **
48257992 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
1 TAAACCAAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
48258046 T
1 T
48258047 CTTACAAGAG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.31
Consensus pattern (54 bp):
TAAACCAAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
Found at i:48258097 original size:27 final size:27
Alignment explanation
Indices: 48258056--48258165 Score: 118
Period size: 27 Copynumber: 4.1 Consensus size: 27
48258046 TCTTACAAGA
*
48258056 GTATTTCAGTCATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
48258083 GTATTTCAGTAATTTTGCAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
* *
48258110 GTA-TTCGGTAAGTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
48258136 ATATTT-AGGTAATTTTATAAATCGGGG
1 GTATTTCA-GTAATTTTACAAATCGAGG
48258163 GTA
1 GTA
48258166 CTTTGGTAAT
Statistics
Matches: 68, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
26 21 0.31
27 47 0.69
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:48258165 original size:53 final size:54
Alignment explanation
Indices: 48258069--48258174 Score: 128
Period size: 53 Copynumber: 2.0 Consensus size: 54
48258059 TTTCAGTCAT
* *
48258069 TTTACAAATCGAGGGTATTTCAGTAATTTTGCAAACTGAGGGTA-TTCGGTAAG
1 TTTACAAATCGAGGATATTTCAGTAATTTTACAAACTGAGGGTACTTCGGTAAG
* * *
48258122 TTTACAAATCGAGGATATTT-AGGTAATTTTATAAA-TCGGGGGTACTTTGGTAA
1 TTTACAAATCGAGGATATTTCA-GTAATTTTACAAACT-GAGGGTACTTCGGTAA
48258175 TTTGGTAAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
52 2 0.04
53 36 0.80
54 7 0.16
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (54 bp):
TTTACAAATCGAGGATATTTCAGTAATTTTACAAACTGAGGGTACTTCGGTAAG
Found at i:48258173 original size:27 final size:26
Alignment explanation
Indices: 48258067--48258177 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
48258057 TATTTCAGTC
*
48258067 ATTTTACAAATCGAGGGTATTTCAGTA
1 ATTTTACAAATCGAGGGTATTT-GGTA
* *
48258094 ATTTTGCAAA-CTGAGGGTATTCGGTA
1 ATTTTACAAATC-GAGGGTATTTGGTA
* *
48258120 AGTTTACAAATCGAGGATATTTAGGTA
1 ATTTTACAAATCGAGGGTATTT-GGTA
* *
48258147 ATTTTATAAATCGGGGGTACTTTGGTA
1 ATTTTACAAATCGAGGGTA-TTTGGTA
48258174 ATTT
1 ATTT
48258178 GGTAAACTAA
Statistics
Matches: 69, Mismatches: 11, Indels: 8
0.78 0.12 0.09
Matches are distributed among these distances:
26 20 0.29
27 46 0.67
28 3 0.04
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTTACAAATCGAGGGTATTTGGTA
Found at i:48265061 original size:13 final size:13
Alignment explanation
Indices: 48265043--48265076 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
48265033 TTCGAAGGGT
48265043 ACATGGGCTAGTC
1 ACATGGGCTAGTC
48265056 ACATGGGCTAGTC
1 ACATGGGCTAGTC
48265069 ACATGGGC
1 ACATGGGC
48265077 ATGTGGTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.32, T:0.21
Consensus pattern (13 bp):
ACATGGGCTAGTC
Found at i:48271806 original size:43 final size:43
Alignment explanation
Indices: 48271771--48271923 Score: 148
Period size: 42 Copynumber: 3.6 Consensus size: 43
48271761 TCTTGCATGT
** *
48271771 AATTAAATATCGATGCCTCTGTCCCAGACAGGGTCTTACACAA
1 AATTAAATATCGATGCCGATGTCCCAGACAGGGTCTTACACGA
* ** * * * * *
48271814 AATCAGGTA-CGATGTCGATGTCCCAGACATGGTCTTATATGT
1 AATTAAATATCGATGCCGATGTCCCAGACAGGGTCTTACACGA
* ** *
48271856 AATTCAATATCGATGCCTCTGTCCCAGATAGGGTCTTACACGA
1 AATTAAATATCGATGCCGATGTCCCAGACAGGGTCTTACACGA
*
48271899 AATTAGATAT-GATGCCGATGTCCCA
1 AATTAAATATCGATGCCGATGTCCCA
48271924 TGCATGGTCT
Statistics
Matches: 82, Mismatches: 27, Indels: 3
0.73 0.24 0.03
Matches are distributed among these distances:
42 43 0.52
43 39 0.48
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
AATTAAATATCGATGCCGATGTCCCAGACAGGGTCTTACACGA
Found at i:48271872 original size:85 final size:85
Alignment explanation
Indices: 48271748--48271981 Score: 276
Period size: 85 Copynumber: 2.8 Consensus size: 85
48271738 CAATGCCAAC
* * ** *
48271748 GTCCCGGACGTGGTCTTGCATGTAATTAAATATCGATGCCTCTGTCCCAGACAGGGTCTTACACA
1 GTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCTGTCCCAGACAGGGTCTTACACA
* *
48271813 AAATCAGGTACGATGTCGAT
66 AAATCAGATACGATGCCGAT
* *
48271833 GTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCTGTCCCAGATAGGGTCTTACACG
1 GTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCTGTCCCAGACAGGGTCTTACACA
* *
48271898 AAATTAGATATGATGCCGAT
66 AAATCAGATACGATGCCGAT
* * * * *
48271918 GTCCCATG-CATGGTCTTATACGTGAATCTC-A-ATCGAGGCATGTGTCCCAGACACGGTCTTAC
1 GTCCCA-GACATGGTCTTATATGT-AAT-TCAATATCGATGCCTCTGTCCCAGACAGGGTCTTAC
48271980 AC
63 AC
48271982 GATATCTCAG
Statistics
Matches: 129, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
85 122 0.95
86 5 0.04
87 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCTGTCCCAGACAGGGTCTTACACA
AAATCAGATACGATGCCGAT
Found at i:48271933 original size:42 final size:43
Alignment explanation
Indices: 48271748--48271935 Score: 150
Period size: 43 Copynumber: 4.4 Consensus size: 43
48271738 CAATGCCAAC
* * * * * * **
48271748 GTCCCGGACGTGGTCTTGCATGTAATTAAATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGAAATTAGATATCGATGCCGAT
* * * * *
48271791 GTCCCAGACAGGGTCTTACACAAAATCAGGTA-CGATGTCGAT
1 GTCCCAGACATGGTCTTACACGAAATTAGATATCGATGCCGAT
* * * **
48271833 GTCCCAGACATGGTCTTATATGTAATTCA-ATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGAAATT-AGATATCGATGCCGAT
* *
48271876 GTCCCAGATAGGGTCTTACACGAAATTAGATAT-GATGCCGAT
1 GTCCCAGACATGGTCTTACACGAAATTAGATATCGATGCCGAT
48271918 GTCCCATG-CATGGTCTTA
1 GTCCCA-GACATGGTCTTA
48271936 TACGTGAATC
Statistics
Matches: 109, Mismatches: 32, Indels: 9
0.73 0.21 0.06
Matches are distributed among these distances:
42 52 0.48
43 57 0.52
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGAAATTAGATATCGATGCCGAT
Found at i:48275686 original size:38 final size:40
Alignment explanation
Indices: 48275621--48275799 Score: 127
Period size: 40 Copynumber: 4.5 Consensus size: 40
48275611 TCGTTCAAGT
* * * ** *
48275621 GCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AAT
1 GCCTTCGGGACTTAACCCGG-AATTAGTAACTCACACAAAG
* *
48275660 GCCTTC-GGACTTAACCCGGAATTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAACCCGGAATTAGTAACTCACACAAAG
* * *
48275699 GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAT
1 GCCTTCGGGACTTAACCCGGAATTAGTAACTCACACAAAG
* ** * *
48275739 ACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-
1 GCCTTCGGGA-CTTAACCCGGAAT-TAGTAACTCA-CACAAAG
*
48275779 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
48275800 CAGCATTCAA
Statistics
Matches: 112, Mismatches: 20, Indels: 14
0.77 0.14 0.10
Matches are distributed among these distances:
37 1 0.01
38 20 0.18
39 19 0.17
40 63 0.56
41 9 0.08
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGAATTAGTAACTCACACAAAG
Found at i:48275715 original size:40 final size:37
Alignment explanation
Indices: 48275660--48275799 Score: 129
Period size: 40 Copynumber: 3.5 Consensus size: 37
48275650 CTCATTCAAT
48275660 GCCTTCGGACTTAACCCGGAATTAGTATCTCGCACAAA
1 GCCTTCGGACTTAACCCGGAATTAGTA-CTCGCACAAA
*
48275698 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
1 -GCCTTC-GGACTTAACCCGGAATTAGT-ACTCGCACAAA
* ** *
48275738 TACCTTCGGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA
1 -GCCTTCGGA-CTTAACCCGGAAT-TAGT-AC-TCGCACAAA
*
48275779 GCCTTCGGGACTTAGCCCGGA
1 GCCTTC-GGACTTAACCCGGA
48275800 CAGCATTCAA
Statistics
Matches: 84, Mismatches: 10, Indels: 12
0.79 0.09 0.11
Matches are distributed among these distances:
39 11 0.13
40 61 0.73
41 12 0.14
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (37 bp):
GCCTTCGGACTTAACCCGGAATTAGTACTCGCACAAA
Found at i:48275729 original size:78 final size:79
Alignment explanation
Indices: 48275621--48275799 Score: 179
Period size: 80 Copynumber: 2.3 Consensus size: 79
48275611 TCGTTCAAGT
* * * ** *
48275621 GCCTTCGGGACATAGCCCGGTCATAGTAACTCATTC-AATGCCTTCGGA-CTTAACCCGGA-ATT
1 GCCTTCGGGACTTAGCCCGG-AATAATAACTCACACAAATACCTTCGGATCTTAACCCGGATA-T
*
48275683 AGT-A-TCTCGCACAAA
64 AGTCACT-TAGCACAAA
* * **
48275698 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATAT
1 -GCCTTCGGGACTTAGCCCGGAA-TAATAACTCACACAAATACCTTCGGATCTTAACCCGGATAT
48275763 AGTCACTTAGCACAAA
64 AGTCACTTAGCACAAA
48275779 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
48275800 CAGCATTCAA
Statistics
Matches: 83, Mismatches: 12, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 27 0.33
79 11 0.13
80 33 0.40
81 10 0.12
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGACTTAGCCCGGAATAATAACTCACACAAATACCTTCGGATCTTAACCCGGATATAG
TCACTTAGCACAAA
Found at i:48283566 original size:39 final size:39
Alignment explanation
Indices: 48283493--48283610 Score: 121
Period size: 40 Copynumber: 3.0 Consensus size: 39
48283483 TAGCTCCTCG
* * *
48283493 TTCAAGTGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGG-AATTAGTAACTCA
* *
48283533 TTCAATGCCTTCGGGACTTAACCCGGAATTAGTATCTCG
1 TTCAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCA
** * *
48283572 CACAAAGGCCTTCGGGACTTAACCCGGAATTAATAACTC
1 TTC-AATGCCTTCGGGACTTAACCCGGAATTAGTAACTC
48283611 GCACAAATAC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
38 1 0.02
39 28 0.42
40 37 0.56
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (39 bp):
TTCAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCA
Found at i:48283588 original size:40 final size:38
Alignment explanation
Indices: 48283539--48283679 Score: 142
Period size: 40 Copynumber: 3.6 Consensus size: 38
48283529 CTCATTCAAT
48283539 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAA
1 GCCTTCGGGACTTAACCCGGAATTAGTA-CTCGCACAAA
*
48283578 GGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAA
1 -GCCTTCGGGACTTAACCCGGAATTAGT-ACTCGCACAAA
* ** *
48283618 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA
1 -GCCTTCGGGA-CTTAACCCGGAAT-TAGT-AC-TCGCACAAA
*
48283659 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
48283680 CAGCATTCAA
Statistics
Matches: 85, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
39 5 0.06
40 68 0.80
41 12 0.14
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (38 bp):
GCCTTCGGGACTTAACCCGGAATTAGTACTCGCACAAA
Found at i:48286939 original size:86 final size:86
Alignment explanation
Indices: 48286794--48286965 Score: 326
Period size: 86 Copynumber: 2.0 Consensus size: 86
48286784 GGTGAAAAAC
*
48286794 TCGATCTAGCAAACCCTCGATCGGTCAATTCTTGGAACTGAGATTTTAATTCTTTTAACTCGATC
1 TCGATCTAGCAAACCCTCGATCGGTCAATTCTTGCAACTGAGATTTTAATTCTTTTAACTCGATC
*
48286859 GGAGCCATTCTATACGGAGCT
66 AGAGCCATTCTATACGGAGCT
48286880 TCGATCTAGCAAACCCTCGATCGGTCAATTCTTGCAACTGAGATTTTAATTCTTTTAACTCGATC
1 TCGATCTAGCAAACCCTCGATCGGTCAATTCTTGCAACTGAGATTTTAATTCTTTTAACTCGATC
48286945 AGAGCCATTCTATACGGAGCT
66 AGAGCCATTCTATACGGAGCT
48286966 ATTGAAATCA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (86 bp):
TCGATCTAGCAAACCCTCGATCGGTCAATTCTTGCAACTGAGATTTTAATTCTTTTAACTCGATC
AGAGCCATTCTATACGGAGCT
Found at i:48286942 original size:43 final size:42
Alignment explanation
Indices: 48286809--48286944 Score: 100
Period size: 43 Copynumber: 3.2 Consensus size: 42
48286799 CTAGCAAACC
48286809 CTCGATCGGTCAATTCTTGGAACTGAGATTTTAATTCTTTTAA
1 CTCGATCGGTCAATTCTT-GAACTGAGATTTTAATTCTTTTAA
* * * * ** ***
48286852 CTCGATCGGAGCCATTC-T-ATACGGAG-CTTCGA-TCTAGCAAA
1 CTCGATCGG-TCAATTCTTGA-ACTGAGATTTTAATTCT-TTTAA
48286893 CCCTCGATCGGTCAATTCTTGCAACTGAGATTTTAATTCTTTTAA
1 --CTCGATCGGTCAATTCTTG-AACTGAGATTTTAATTCTTTTAA
48286938 CTCGATC
1 CTCGATC
48286945 AGAGCCATTC
Statistics
Matches: 65, Mismatches: 18, Indels: 20
0.63 0.17 0.19
Matches are distributed among these distances:
40 3 0.05
41 6 0.09
42 10 0.15
43 27 0.42
44 10 0.15
45 6 0.09
46 3 0.05
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (42 bp):
CTCGATCGGTCAATTCTTGAACTGAGATTTTAATTCTTTTAA
Found at i:48290184 original size:43 final size:43
Alignment explanation
Indices: 48290137--48290286 Score: 162
Period size: 43 Copynumber: 3.5 Consensus size: 43
48290127 ACAATGCCGA
* * *
48290137 CGTCCCAGATATGGTCTTACATGTAATTCAATATTGATGCCTC
1 CGTCCCAGACAGGGTCTTACATGTAATTCAATATCGATGCCTC
* * * *
48290180 CGTCCCAGATAGGGTCTTACATG-AAATCAGATA-CAATG-CTGA
1 CGTCCCAGACAGGGTCTTACATGTAATTCA-ATATCGATGCCT-C
* * *
48290222 TGTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTC
1 CGTCCCAGACAGGGTCTTACATGTAATTCAATATCGATGCCTC
*
48290265 TGTCCCAGACAGGGTCTTACAT
1 CGTCCCAGACAGGGTCTTACAT
48290287 AAAATCATAT
Statistics
Matches: 88, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 2 0.02
42 30 0.34
43 54 0.61
44 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (43 bp):
CGTCCCAGACAGGGTCTTACATGTAATTCAATATCGATGCCTC
Found at i:48290238 original size:42 final size:40
Alignment explanation
Indices: 48290138--48290307 Score: 135
Period size: 43 Copynumber: 4.0 Consensus size: 40
48290128 CAATGCCGAC
* * * * **
48290138 GTCCCAGATATGGTCTTACATGTAATTCAATATTGATGCCTCC
1 GTCCCAGACAGGGTCTTACATG-AAATCAATA-CGATG-CTAT
* *
48290181 GTCCCAGATAGGGTCTTACATGAAATCAGATACAATGCTGAT
1 GTCCCAGACAGGGTCTTACATGAAATCA-ATACGATGCT-AT
* * * *
48290223 GTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACAGGGTCTTACATG-AAATCAATA-CGATG-CTAT
*
48290266 GTCCCAGACAGGGTCTTACATAAAATCATATACGATGC-AT
1 GTCCCAGACAGGGTCTTACATGAAATCA-ATACGATGCTAT
48290306 GT
1 GT
48290308 AACACCCCTT
Statistics
Matches: 104, Mismatches: 17, Indels: 15
0.76 0.12 0.11
Matches are distributed among these distances:
40 3 0.03
41 3 0.03
42 40 0.38
43 56 0.54
44 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (40 bp):
GTCCCAGACAGGGTCTTACATGAAATCAATACGATGCTAT
Found at i:48290262 original size:85 final size:85
Alignment explanation
Indices: 48290126--48290303 Score: 266
Period size: 85 Copynumber: 2.1 Consensus size: 85
48290116 TATAATCAAG
* * *
48290126 TACAATGCCGACGTCCCAGATATGGTCTTACATGTAATTCAATATTGATGCCTCCGTCCCAGATA
1 TACAATGCCGACGTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCTCCGTCCCAGACA
*
48290191 GGGTCTTACATGAAATCAGA
66 GGGTCTTACATAAAATCAGA
* * * *
48290211 TACAATGCTGATGTCCCAGACATGGTCTTATATGTAATTCAATATCGATGCCTCTGTCCCAGACA
1 TACAATGCCGACGTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCTCCGTCCCAGACA
*
48290276 GGGTCTTACATAAAATCATA
66 GGGTCTTACATAAAATCAGA
*
48290296 TACGATGC
1 TACAATGC
48290304 ATGTAACACC
Statistics
Matches: 83, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 83 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (85 bp):
TACAATGCCGACGTCCCAGACATGGTCTTACATGTAATTCAATATCGATGCCTCCGTCCCAGACA
GGGTCTTACATAAAATCAGA
Found at i:48292212 original size:27 final size:27
Alignment explanation
Indices: 48292172--48292225 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
48292162 AGGTACAACC
* *
48292172 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
48292199 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
48292226 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:48295598 original size:30 final size:30
Alignment explanation
Indices: 48295564--48295624 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
48295554 TCCTTAACTC
48295564 AAACTTTTGAAAAATTACAATTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
* * * *
48295594 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGAAAAATTACAATTTTGCCCCT
48295624 A
1 A
48295625 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGAAAAATTACAATTTTGCCCCT
Found at i:48297627 original size:46 final size:47
Alignment explanation
Indices: 48297559--48297689 Score: 192
Period size: 46 Copynumber: 2.7 Consensus size: 47
48297549 TAGATATACA
** * *
48297559 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATA-TC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATACTC
48297605 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATCCGTC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATA--C-TC
48297655 CATCTCATACACGTTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTT
48297690 CGCCACATAT
Statistics
Matches: 77, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
46 40 0.52
50 37 0.48
ACGTcount: A:0.22, C:0.33, G:0.11, T:0.34
Consensus pattern (47 bp):
CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATACTC
Found at i:48297699 original size:50 final size:50
Alignment explanation
Indices: 48297559--48297699 Score: 173
Period size: 50 Copynumber: 2.9 Consensus size: 50
48297549 TAGATATACA
** * * * *
48297559 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATA----TC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTCACCACATATCCGTC
* *
48297605 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATCCGTC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTCACCACATATCCGTC
*
48297655 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTCGCCACATAT
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTCACCACATAT
48297700 ATACACTTCC
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
46 40 0.48
50 44 0.52
ACGTcount: A:0.23, C:0.33, G:0.11, T:0.33
Consensus pattern (50 bp):
CATCTCATACACGTTTCGCATTAGCCATTCGGCTTCACCACATATCCGTC
Found at i:48297744 original size:47 final size:47
Alignment explanation
Indices: 48297713--48297953 Score: 401
Period size: 47 Copynumber: 5.1 Consensus size: 47
48297703 CACTTCCACG
**
48297713 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
48297760 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
48297807 TTCATCACATTGGCCATTCGGCCTTATCAAACATATGCAAGTTCAAA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
48297854 TTCATCGCATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
48297901 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
48297948 TTCATC
1 TTCATC
48297954 TCATAAAATC
Statistics
Matches: 179, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 179 1.00
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:48297791 original size:22 final size:22
Alignment explanation
Indices: 48297763--48297835 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
48297753 GTTCACATTC
48297763 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
48297785 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
48297809 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
48297832 ATCA
1 ATCA
48297836 AACATATGCA
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
22 14 0.37
23 7 0.18
24 7 0.18
25 10 0.26
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:48301328 original size:25 final size:25
Alignment explanation
Indices: 48301288--48301342 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
48301278 CAGTTAAAGA
48301288 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
* *
48301313 ATTCGCACGCATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
48301338 ATTCG
1 ATTCG
48301343 TTATTACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 1 0.04
25 26 0.96
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:48301571 original size:40 final size:40
Alignment explanation
Indices: 48301506--48301702 Score: 295
Period size: 40 Copynumber: 4.9 Consensus size: 40
48301496 GATTACACAT
* * * **
48301506 CACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* *
48301546 CACCAGCACAAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* *
48301586 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
48301626 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
48301666 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
48301703 TATATAACTC
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.31, G:0.23, T:0.20
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
Found at i:48301640 original size:80 final size:80
Alignment explanation
Indices: 48301502--48301704 Score: 352
Period size: 80 Copynumber: 2.5 Consensus size: 80
48301492 GCCTGATTAC
** * * *
48301502 ACATCACCGGCACGAATGCCCTTCAGGACTTAGCCCGGATGTAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
48301567 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
*
48301582 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
48301647 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
48301662 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
48301705 TATAACTCTC
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 117 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.21
Consensus pattern (80 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
GGACTTAGCCCGGAT
Found at i:48303360 original size:46 final size:46
Alignment explanation
Indices: 48303178--48303350 Score: 310
Period size: 46 Copynumber: 3.8 Consensus size: 46
48303168 TATATATACA
** * *
48303178 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
48303224 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
48303270 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
48303316 CATCTCATACACGTTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTT
48303351 CGCCACATAT
Statistics
Matches: 123, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 123 1.00
ACGTcount: A:0.23, C:0.32, G:0.10, T:0.35
Consensus pattern (46 bp):
CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:48303405 original size:47 final size:47
Alignment explanation
Indices: 48303374--48303614 Score: 437
Period size: 47 Copynumber: 5.1 Consensus size: 47
48303364 CACTTCCACG
**
48303374 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
48303421 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
48303468 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
48303515 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
48303562 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
48303609 TTCATC
1 TTCATC
48303615 TCATAAAATC
Statistics
Matches: 186, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 186 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:48321283 original size:26 final size:26
Alignment explanation
Indices: 48321254--48321316 Score: 110
Period size: 26 Copynumber: 2.5 Consensus size: 26
48321244 TTAACAATAG
48321254 TAAGTCACTTTTGCATTTTACACGAT
1 TAAGTCACTTTTGCATTTTACACGAT
*
48321280 TAAGTCACTTTTGCATTTTATACGAT
1 TAAGTCACTTTTGCATTTTACACGAT
48321306 TAAGTCA-TTTT
1 TAAGTCACTTTT
48321317 ATTAAATCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 4 0.11
26 32 0.89
ACGTcount: A:0.27, C:0.16, G:0.11, T:0.46
Consensus pattern (26 bp):
TAAGTCACTTTTGCATTTTACACGAT
Found at i:48322043 original size:14 final size:16
Alignment explanation
Indices: 48322013--48322045 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
48322003 TTTCATCTTT
48322013 TTTATTATTTATCATC
1 TTTATTATTTATCATC
48322029 TTTATT-TTT-TCATC
1 TTTATTATTTATCATC
48322043 TTT
1 TTT
48322046 CCAATCCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 3 0.18
16 6 0.35
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTATTATTTATCATC
Found at i:48323780 original size:27 final size:27
Alignment explanation
Indices: 48323750--48323927 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
48323740 ATATTGAGCC
* * *
48323750 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
48323777 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
48323804 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
48323832 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
48323859 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
48323886 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
48323913 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48323928 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:48323843 original size:55 final size:55
Alignment explanation
Indices: 48323750--48323927 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
48323740 ATATTGAGCC
* * *
48323750 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
48323804 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
48323859 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
48323913 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48323928 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:48323889 original size:82 final size:81
Alignment explanation
Indices: 48323771--48323926 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
48323761 TGCTATACAA
* * *
48323771 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
48323836 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
48323853 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
48323917 CACTTAGTGC
65 CACTTAGTGC
48323927 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48331898 original size:27 final size:27
Alignment explanation
Indices: 48331868--48332045 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
48331858 ATATTGAGCC
* * *
48331868 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
48331895 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
48331922 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
48331950 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
48331977 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
48332004 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
48332031 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48332046 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:48331961 original size:55 final size:55
Alignment explanation
Indices: 48331868--48332045 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
48331858 ATATTGAGCC
* * *
48331868 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
48331922 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
48331977 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
48332031 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48332046 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:48332007 original size:82 final size:81
Alignment explanation
Indices: 48331889--48332044 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
48331879 TGCTATACAA
* * *
48331889 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
48331954 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
48331971 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
48332035 CACTTAGTGC
65 CACTTAGTGC
48332045 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:48339023 original size:26 final size:27
Alignment explanation
Indices: 48338994--48339052 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
48338984 GTACGAGGGC
*
48338994 TAAAATTGTCAAAA-TTTTGTCAGAGG
1 TAAAATCGTCAAAAGTTTTGTCAGAGG
**
48339020 TAAAATCGTCAAAAGTTTTGTTGGAGG
1 TAAAATCGTCAAAAGTTTTGTCAGAGG
48339047 TAAAAT
1 TAAAAT
48339053 AGGGATGAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 13 0.45
27 16 0.55
ACGTcount: A:0.39, C:0.07, G:0.20, T:0.34
Consensus pattern (27 bp):
TAAAATCGTCAAAAGTTTTGTCAGAGG
Found at i:48341331 original size:6 final size:6
Alignment explanation
Indices: 48341313--48341468 Score: 79
Period size: 6 Copynumber: 25.3 Consensus size: 6
48341303 AAAAAACATT
* * * *
48341313 ATCAGA A-CTAGA AGCAGA ACCAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
48341362 ATCAGA ATCAGA ATCAGT ATCAGGTA A-CCGA ATCAAA ATCACA ATCAGC
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
48341411 ATCAGGTA A-CAGA ATCAAA ATCAAA ATCAGT ATCAGGTA A-CAGA ATCAAA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
48341461 ATCAGA AT
1 ATCAGA AT
48341469 GTGAATGCAA
Statistics
Matches: 115, Mismatches: 21, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
5 8 0.07
6 92 0.80
7 11 0.10
8 4 0.03
ACGTcount: A:0.48, C:0.18, G:0.17, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:48341368 original size:31 final size:31
Alignment explanation
Indices: 48341327--48341468 Score: 194
Period size: 31 Copynumber: 4.6 Consensus size: 31
48341317 GAACTAGAAG
* * * * *
48341327 CAGAACCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
48341358 CAGAATCAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
* * *
48341389 CCGAATCAAAATCACAATCAGCATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
48341420 CAGAATCAAAATCAAAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
48341451 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
48341469 GTGAATGCAA
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 99 1.00
ACGTcount: A:0.48, C:0.18, G:0.16, T:0.18
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:48341642 original size:27 final size:26
Alignment explanation
Indices: 48341600--48341673 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 26
48341590 GCTCAGTTAT
* * *
48341600 CAGATATTATGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
48341627 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
48341653 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
48341674 TTAACAGAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 20 0.48
27 22 0.52
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:48341663 original size:26 final size:27
Alignment explanation
Indices: 48341612--48341673 Score: 90
Period size: 26 Copynumber: 2.3 Consensus size: 27
48341602 GATATTATGA
* *
48341612 CAGAGTCACCAGATACAGATATTGTGG
1 CAGAGCCACCAGATACAGATAATGTGG
48341639 CAGAGCCACCAGA-ACAGATAATGTGG
1 CAGAGCCACCAGATACAGATAATGTGG
*
48341665 CAAAGCCAC
1 CAGAGCCAC
48341674 TTAACAGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 20 0.62
27 12 0.38
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (27 bp):
CAGAGCCACCAGATACAGATAATGTGG
Found at i:48341860 original size:22 final size:22
Alignment explanation
Indices: 48341832--48341895 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
48341822 GCAAATACGT
*
48341832 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
48341854 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
48341876 TTAACACAAAGCCATAATCA
1 TTGGCACAAAGCCATAATCA
48341896 AAAGGCTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:48342380 original size:27 final size:27
Alignment explanation
Indices: 48342323--48342544 Score: 295
Period size: 27 Copynumber: 8.3 Consensus size: 27
48342313 GGGGCAAAAT
* * * *
48342323 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48342349 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48342376 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
48342403 GGTAATTCTACCCTACAAGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48342430 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
48342457 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48342483 TGGTAATTCTACCCTACAGGGGTATTCC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* *
48342511 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
48342538 GATAATT
1 GGTAATT
48342545 TTGTAAATTG
Statistics
Matches: 173, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
26 17 0.10
27 154 0.89
28 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:48342822 original size:27 final size:27
Alignment explanation
Indices: 48342565--48342815 Score: 234
Period size: 27 Copynumber: 9.3 Consensus size: 27
48342555 AGGGTAAAAC
* * * *
48342565 GGTAATTCTATAAATCAGGGGTACTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
**
48342592 GGTAATTTTACAAGTC-GAGGGTATTTT
1 GGTAATTTTACAAACCAG-GGGTATTTT
** ***** * *
48342619 AATAATTTTATGGGTCAAGGGTATTTC
1 GGTAATTTTACAAACCAGGGGTATTTT
* * * *
48342646 AGTAATTTCACAAATCAGGGATATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
48342673 GGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
48342700 GATAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
*
48342727 GGTAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
* * * *
48342754 GGTGATTTTATAAACCAAGGGTATTCT
1 GGTAATTTTACAAACCAGGGGTATTTT
* *
48342781 AGTAAATTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAACCAGGGGTATTTT
48342808 GGTAATTT
1 GGTAATTT
48342816 GGTAAACTAA
Statistics
Matches: 182, Mismatches: 40, Indels: 4
0.81 0.18 0.02
Matches are distributed among these distances:
26 1 0.01
27 181 0.99
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAACCAGGGGTATTTT
Found at i:48345620 original size:46 final size:46
Alignment explanation
Indices: 48345567--48345657 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
48345557 TATATATACA
* * *
48345567 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
48345613 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
48345658 ATACACATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:48345700 original size:22 final size:22
Alignment explanation
Indices: 48345674--48345749 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
48345664 ATCCACGTTC
48345674 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
48345696 ATCACATGTATG-CATGT-T-CACATTT
1 ATCACAT-T-GGCCAT-TCTGC-C--TT
*
48345721 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCTGCCTT
48345743 ATCACAT
1 ATCACAT
48345750 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 17 0.40
23 8 0.19
24 7 0.17
25 10 0.24
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:48345842 original size:22 final size:22
Alignment explanation
Indices: 48345815--48345890 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
48345805 GTTCACATTC
48345815 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*** * *
48345837 ATCACATATATACATGTTC-ACATT
1 ATCACAT-TGGCCA--TTCGGCCTT
48345861 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
48345884 ATCACAT
1 ATCACAT
48345891 ATATGCATGT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 17 0.44
23 6 0.15
24 6 0.15
25 10 0.26
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:48346074 original size:47 final size:47
Alignment explanation
Indices: 48345671--48346072 Score: 633
Period size: 47 Copynumber: 8.6 Consensus size: 47
48345661 CACATCCACG
* **
48345671 TTCATCACATTGGCCATTCTGCCTTATCACATGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * *
48345718 TTTATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
48345765 TTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
48345812 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
48345859 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
48345906 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
48345953 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
** * *
48346000 TTCATCACATTTTCCATTCGGCCTTAGCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
48346047 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
48346073 GCTCATGTAT
Statistics
Matches: 331, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 331 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:48346092 original size:141 final size:141
Alignment explanation
Indices: 48345637--48346103 Score: 655
Period size: 141 Copynumber: 3.3 Consensus size: 141
48345627 TTCGCATTAA
* ** * * * *
48345637 CCATTCGGCTTTCCCACATATATACACATCCACGTTCATCACATTGGCCATTCTGCCTTATCACA
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* *
48345702 TGTATGCATGTTCACATTTATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATT
66 TATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATT
*
48345767 CTTCACATTGG
131 CATCACATTGG
* **
48345778 CCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
*
48345843 TATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATT
66 TATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATT
48345908 CATCACATTGG
131 CATCACATTGG
** *
48345919 CCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGTCTTATCACA
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* * ** * * * *
48345984 CAAATGCATGTTCACATTCATCACATTTTCCATTCGGCCTTAGCACACAAATGCATGTTCACATT
66 TATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATT
*
48346049 CATCACATTTG
131 CATCACATTGG
* * ** *
48346060 CCATTCGGCCTTAGCTCATGTATACACATTCACATCCATCACAT
1 CCATTCGGCCTTATCACACATATACACATTCACATTCATCACAT
48346104 AAAATCCTAA
Statistics
Matches: 293, Mismatches: 33, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
141 293 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (141 bp):
CCATTCGGCCTTATCACACATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACA
TATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATATT
CATCACATTGG
Found at i:48347237 original size:56 final size:56
Alignment explanation
Indices: 48347151--48347326 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
48347141 ACAAGGGATG
*
48347151 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
48347207 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
48347263 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
48347319 ATGGGCAA
1 ATGGGCAA
48347327 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:48348644 original size:40 final size:39
Alignment explanation
Indices: 48348454--48348637 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
48348444 CGAATGATGT
* * * *
48348454 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
48348494 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
* * *
48348534 CCAGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
48348572 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
48348613 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
48348638 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
39 32 0.27
40 78 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:48348659 original size:79 final size:79
Alignment explanation
Indices: 48348506--48348670 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
48348496 GGACTAAGAT
* **
48348506 CCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGCCCAAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
* *
48348571 ATTCGGGTTAAGTC
66 ATTCCGGTTAAATC
* * * *
48348585 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCAGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-C
* *
48348648 TATA-TCCGGTTAAATT
63 TAAATTCCGGTTAAATC
48348664 CCGAAGG
1 CCGAAGG
48348671 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 50 0.69
80 20 0.28
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCAGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATTCCGGTTAAATC
Found at i:48352114 original size:12 final size:13
Alignment explanation
Indices: 48352099--48352139 Score: 61
Period size: 12 Copynumber: 3.4 Consensus size: 13
48352089 GAAACATTAA
48352099 CAGAACT-AGAAT
1 CAGAACTCAGAAT
48352111 CAGAA-TCAGAAT
1 CAGAACTCAGAAT
48352123 CAG-ACTCAGAAT
1 CAGAACTCAGAAT
48352135 CAGAA
1 CAGAA
48352140 TTAGGTGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.08
12 23 0.88
13 1 0.04
ACGTcount: A:0.49, C:0.20, G:0.17, T:0.15
Consensus pattern (13 bp):
CAGAACTCAGAAT
Found at i:48352115 original size:6 final size:6
Alignment explanation
Indices: 48352106--48352258 Score: 98
Period size: 6 Copynumber: 24.8 Consensus size: 6
48352096 TAACAGAACT
* * *
48352106 AGAATC AGAATC AGAATC AGACTC AGAATC AGAATT AGGTGAT- AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * * * *
48352155 AGAATT AGAATC AGTATC AGGTAA-C CGAATC AAAATC AGAATC AGGATC
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC AGAATC
* * * *
48352204 AAGTAAT- AGAATC AAAATC AGAATC AGTATC AGGTAA-C AGAATC AAAATT
1 -AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
48352254 AGAAT
1 AGAAT
48352259 GTGAATGCAA
Statistics
Matches: 113, Mismatches: 22, Indels: 24
0.71 0.14 0.15
Matches are distributed among these distances:
5 9 0.08
6 89 0.79
7 9 0.08
8 6 0.05
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:48352120 original size:18 final size:18
Alignment explanation
Indices: 48352099--48352258 Score: 85
Period size: 19 Copynumber: 8.7 Consensus size: 18
48352089 GAAACATTAA
*
48352099 CAGAACTAGAATCAGAAT
1 CAGAATTAGAATCAGAAT
* *
48352117 CAGAATCAGACTCAGAAT
1 CAGAATTAGAATCAGAAT
*
48352135 CAGAATTAGGTGAT-AGAAT
1 CAGAATTA-G-AATCAGAAT
*
48352154 CAGAATTAGAATCAGTAT
1 CAGAATTAGAATCAGAAT
** *
48352172 CAGGTAA-CCGAATCAAAAT
1 CA-G-AATTAGAATCAGAAT
* *
48352191 CAGAATCAGGATCAAGTAAT
1 CAGAATTAGAATC-AG-AAT
* *
48352211 -AGAATCAAAATCAGAAT
1 CAGAATTAGAATCAGAAT
* *
48352228 CAGTATCAGGTAA-CAGAAT
1 CAGAATTA-G-AATCAGAAT
*
48352247 CAAAATTAGAAT
1 CAGAATTAGAAT
48352259 GTGAATGCAA
Statistics
Matches: 108, Mismatches: 22, Indels: 24
0.70 0.14 0.16
Matches are distributed among these distances:
17 9 0.08
18 44 0.41
19 47 0.44
20 8 0.07
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.21
Consensus pattern (18 bp):
CAGAATTAGAATCAGAAT
Found at i:48352156 original size:31 final size:31
Alignment explanation
Indices: 48352117--48352258 Score: 167
Period size: 31 Copynumber: 4.6 Consensus size: 31
48352107 GAATCAGAAT
* * * * *
48352117 CAGAATCAGACTCAGAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
* * *
48352148 TAGAATCAGAATTAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
* * *
48352179 CCGAATCAAAATCAGAATCAGGATCAAGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
48352210 TAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
*
48352241 CAGAATCAAAATTAGAAT
1 CAGAATCAAAATCAGAAT
48352259 GTGAATGCAA
Statistics
Matches: 93, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 93 1.00
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Done.