Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 153 of 325
Found at i:48961357 original size:198 final size:198
Alignment explanation
Indices: 48961106--48961502 Score: 749
Period size: 198 Copynumber: 2.0 Consensus size: 198
48961096 TCCTTCACTT
48961106 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
1 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
*
48961171 GTATCACCCATGTGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
66 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
* *
48961236 TCAGCACTATACATGTGACCTAGCTAGATACCATCTGTATCATCCAATCTTTCCGAAGGTTCAAC
131 TCAGCACTATACATGTGACCTAGCTACATACCATCTATATCATCCAATCTTTCCGAAGGTTCAAC
48961301 CGG
196 CGG
*
48961304 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACGTA
1 GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
48961369 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
66 GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
*
48961434 TCAGCACTATACATGTGACCTAGCTACATCCCATCTATATCATCCAATCTTTCCGAAGGTTCAAC
131 TCAGCACTATACATGTGACCTAGCTACATACCATCTATATCATCCAATCTTTCCGAAGGTTCAAC
48961499 CGG
196 CGG
48961502 G
1 G
48961503 ATTTCTCTCT
Statistics
Matches: 194, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
198 194 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (198 bp):
GGAACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATA
GTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTACACATGATGTGCAC
TCAGCACTATACATGTGACCTAGCTACATACCATCTATATCATCCAATCTTTCCGAAGGTTCAAC
CGG
Found at i:48964077 original size:14 final size:14
Alignment explanation
Indices: 48964058--48964088 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
48964048 TGATAGTTGG
48964058 AAATTTCGAGGACA
1 AAATTTCGAGGACA
*
48964072 AAATTTCGAGGGCA
1 AAATTTCGAGGACA
48964086 AAA
1 AAA
48964089 GTTCTTTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.45, C:0.13, G:0.23, T:0.19
Consensus pattern (14 bp):
AAATTTCGAGGACA
Found at i:48966759 original size:7 final size:7
Alignment explanation
Indices: 48966747--48966779 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
48966737 TTTTATGAAA
48966747 CCCAAAG
1 CCCAAAG
48966754 CCCAAAG
1 CCCAAAG
48966761 CCCAAAG
1 CCCAAAG
48966768 CCCAAAG
1 CCCAAAG
48966775 CCCAA
1 CCCAA
48966780 TTCATCTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.42, C:0.45, G:0.12, T:0.00
Consensus pattern (7 bp):
CCCAAAG
Found at i:48970724 original size:21 final size:22
Alignment explanation
Indices: 48970685--48970728 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
48970675 AAAGAATGTT
48970685 ATGTGATGTATATGGAAATGAA
1 ATGTGATGTATATGGAAATGAA
* *
48970707 ATGTGA-GTATGTGTAAATGAA
1 ATGTGATGTATATGGAAATGAA
48970728 A
1 A
48970729 CAGGAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.32
Consensus pattern (22 bp):
ATGTGATGTATATGGAAATGAA
Found at i:48978440 original size:26 final size:27
Alignment explanation
Indices: 48978411--48978461 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
48978401 CACAAGTTAG
*
48978411 TCATTT-ACGCACGAGGGGCAAAATAA
1 TCATTTAACACACGAGGGGCAAAATAA
* *
48978437 TCATTTAACACCCTAGGGGCAAAAT
1 TCATTTAACACACGAGGGGCAAAAT
48978462 GGTAATTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (27 bp):
TCATTTAACACACGAGGGGCAAAATAA
Found at i:48978520 original size:27 final size:27
Alignment explanation
Indices: 48978489--48978631 Score: 207
Period size: 27 Copynumber: 5.3 Consensus size: 27
48978479 AGGTTTCTCA
*
48978489 ATAATTCTACCCTACAGGGGTATTTTG
1 ATAATTCTACCCTACAGGGGTATTTCG
*
48978516 ATAATTCTATCCTACAGGGGTA-TTCG
1 ATAATTCTACCCTACAGGGGTATTTCG
* **
48978542 GTAATTCTACCCTACAGGGGTATTTTA
1 ATAATTCTACCCTACAGGGGTATTTCG
48978569 ATAATTCTACCCTACAGGGGTATTTCG
1 ATAATTCTACCCTACAGGGGTATTTCG
* *
48978596 GTAATTCTACCTTACAGGGGTATTTCG
1 ATAATTCTACCCTACAGGGGTATTTCG
*
48978623 GTAATTCTA
1 ATAATTCTA
48978632 TAACTTATCC
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 23 0.22
27 81 0.78
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
ATAATTCTACCCTACAGGGGTATTTCG
Found at i:48978521 original size:53 final size:53
Alignment explanation
Indices: 48978490--48978620 Score: 217
Period size: 53 Copynumber: 2.5 Consensus size: 53
48978480 GGTTTCTCAA
* * *
48978490 TAATTCTACCCTACAGGGGTATTTTGATAATTCTATCCTACAGGGGTATTCGG
1 TAATTCTACCCTACAGGGGTATTTTAATAATTCTACCCTACAGGGGTTTTCGG
48978543 TAATTCTACCCTACAGGGGTATTTTAATAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTTAATAATTCTACCCTACAGGGGT-TTTCGG
*
48978597 TAATTCTACCTTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
48978621 CGGTAATTCT
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 45 0.62
54 28 0.38
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (53 bp):
TAATTCTACCCTACAGGGGTATTTTAATAATTCTACCCTACAGGGGTTTTCGG
Found at i:48984764 original size:26 final size:25
Alignment explanation
Indices: 48984721--48984818 Score: 88
Period size: 26 Copynumber: 3.8 Consensus size: 25
48984711 GGCAAAATGG
* *
48984721 TAATTTTACCCCACAGGGGTTCTCAA
1 TAATTCTACCCTACAGGGGTT-TCAA
* *
48984747 TAATTCTACCCTATAGGGGATTTCAG
1 TAATTCTACCCTACAGGGG-TTTCAA
* * **
48984773 TAATTCTATCCTATAGGGGTATTTTA
1 TAATTCTACCCTACAGGGGT-TTCAA
*
48984799 TAATTCTACCTTACAGGGGT
1 TAATTCTACCCTACAGGGGT
48984819 GTTTCGGTAA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
25 1 0.02
26 56 0.95
27 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (25 bp):
TAATTCTACCCTACAGGGGTTTCAA
Found at i:48984832 original size:27 final size:26
Alignment explanation
Indices: 48984747--48984833 Score: 97
Period size: 26 Copynumber: 3.3 Consensus size: 26
48984737 GGGTTCTCAA
48984747 TAATTCTACCCTATAGGGG-ATTTCAG
1 TAATTCTA-CCTATAGGGGTATTTCAG
*
48984773 TAATTCTATCCTATAGGGGTATTTTA-
1 TAATTCTA-CCTATAGGGGTATTTCAG
* * *
48984799 TAATTCTACCTTACAGGGGTGTTTCGG
1 TAATTCTACC-TATAGGGGTATTTCAG
48984826 TAATTCTA
1 TAATTCTA
48984834 AAACTATCCA
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
25 2 0.04
26 37 0.71
27 13 0.25
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.40
Consensus pattern (26 bp):
TAATTCTACCTATAGGGGTATTTCAG
Found at i:48986071 original size:42 final size:43
Alignment explanation
Indices: 48985952--48986078 Score: 157
Period size: 44 Copynumber: 2.9 Consensus size: 43
48985942 TTGGATTCCA
*
48985952 ATATGAGTTATCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
1 ATATGA-TT-TCGTGTAAGACCATGTCTGGGACATTGGCATCGAT
* *
48985997 TTGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCATCG-T
1 ATATGATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGAT
* * * *
48986040 ATATGATTTCGTGTAAAACCCTGTCTTGGACAGTGGCAT
1 ATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCAT
48986079 TGTAACACCC
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
42 26 0.36
43 9 0.12
44 33 0.46
45 4 0.06
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.33
Consensus pattern (43 bp):
ATATGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGAT
Found at i:48991853 original size:39 final size:40
Alignment explanation
Indices: 48991792--48992002 Score: 255
Period size: 38 Copynumber: 5.5 Consensus size: 40
48991782 AAGCCAAGTA
* * *
48991792 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
48991830 CCTTCGGGACATAGCCCGGATATAGTAACTCGCAC--ATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48991868 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
48991908 CCTTCGGGACTTAGCCCGGATGTA-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
48991947 CCTTC-GGACTTAGCCC-GA-A-CGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACT--CGCACAAATG
48991984 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
48992003 TTATCATCCA
Statistics
Matches: 155, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
36 4 0.03
37 12 0.08
38 75 0.48
39 38 0.25
40 26 0.17
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48998771 original size:12 final size:12
Alignment explanation
Indices: 48998732--48998776 Score: 63
Period size: 13 Copynumber: 3.6 Consensus size: 12
48998722 CCAAAATAAG
*
48998732 GTCACACGCCTGT
1 GTCACACTCC-GT
48998745 GTCACACTCCCGT
1 GTCACACT-CCGT
48998758 GTCACACTCCGT
1 GTCACACTCCGT
48998770 GTCACAC
1 GTCACAC
48998777 GCCCATGTGG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 11 0.37
13 17 0.57
14 2 0.07
ACGTcount: A:0.18, C:0.42, G:0.18, T:0.22
Consensus pattern (12 bp):
GTCACACTCCGT
Found at i:49001292 original size:35 final size:36
Alignment explanation
Indices: 49001217--49001292 Score: 129
Period size: 35 Copynumber: 2.2 Consensus size: 36
49001207 GCTCATTTCA
49001217 AGATTACCCATTCGGGCTAAATCCTTTCTATAATTG
1 AGATTACCCATTCGGGCTAAATCCTTTCTATAATTG
*
49001253 -GATTACCCATTTGGGCTAAATCCTTTCTATAA-TG
1 AGATTACCCATTCGGGCTAAATCCTTTCTATAATTG
49001287 AGATTA
1 AGATTA
49001293 ATGGATTACC
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
34 2 0.05
35 36 0.95
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (36 bp):
AGATTACCCATTCGGGCTAAATCCTTTCTATAATTG
Found at i:49009798 original size:38 final size:38
Alignment explanation
Indices: 49009755--49009830 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
49009745 TTTCAAATTA
*
49009755 ACATGTATAACCGTGGCATATCCACTTAGCACTACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
* *
49009793 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
49009831 TTTCCATTCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACGTT
Found at i:49011494 original size:29 final size:27
Alignment explanation
Indices: 49011476--49011545 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
49011466 ATATTAAGTC
49011476 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
49011503 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
49011531 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
49011546 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:49011539 original size:28 final size:28
Alignment explanation
Indices: 49011476--49011573 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
49011466 ATATTAAGTC
*
49011476 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
49011503 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
49011531 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
49011560 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49011574 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:49016426 original size:40 final size:40
Alignment explanation
Indices: 49016342--49016565 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
49016332 TTGAATGATG
* * * *
49016342 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
49016382 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
49016422 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49016460 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49016500 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
49016541 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49016566 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49016560 original size:80 final size:80
Alignment explanation
Indices: 49016342--49016565 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
49016332 TTGAATGATG
* * * * *
49016342 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
49016405 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
49016422 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
49016484 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
49016500 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
49016565 G
66 G
49016566 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:49024369 original size:40 final size:40
Alignment explanation
Indices: 49024285--49024508 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
49024275 TTGAATGATG
* * * *
49024285 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
49024325 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
49024365 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49024403 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
49024443 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
49024484 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49024509 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49024503 original size:80 final size:80
Alignment explanation
Indices: 49024285--49024508 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
49024275 TTGAATGATG
* * * * *
49024285 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
49024348 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
49024365 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
49024427 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
49024443 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
49024508 G
66 G
49024509 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:49030665 original size:29 final size:27
Alignment explanation
Indices: 49030647--49030716 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
49030637 ATATTAAGTC
49030647 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
49030674 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
49030702 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
49030717 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:49030710 original size:28 final size:28
Alignment explanation
Indices: 49030647--49030744 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
49030637 ATATTAAGTC
*
49030647 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
49030674 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
49030702 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
49030731 CGCACACTTAGTGC
1 CGCACACTTAGTGC
49030745 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:49038719 original size:56 final size:56
Alignment explanation
Indices: 49038648--49038756 Score: 200
Period size: 56 Copynumber: 1.9 Consensus size: 56
49038638 ATTTTGGTGG
*
49038648 AGATTATTCTGTAATTGATTGATATGTTAACAAGCCTTAAACTCTTATATATTGGA
1 AGATTATTCTATAATTGATTGATATGTTAACAAGCCTTAAACTCTTATATATTGGA
*
49038704 AGATTATTCTATAATTGATTGATATGTTAGCAAGCCTTAAACTCTTATATATT
1 AGATTATTCTATAATTGATTGATATGTTAACAAGCCTTAAACTCTTATATATT
49038757 AGAGTCTTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (56 bp):
AGATTATTCTATAATTGATTGATATGTTAACAAGCCTTAAACTCTTATATATTGGA
Found at i:49041484 original size:21 final size:21
Alignment explanation
Indices: 49041433--49041474 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
49041423 AAATAAAGCC
49041433 AAAATCAGCCATTTTTCTCCT
1 AAAATCAGCCATTTTTCTCCT
49041454 AAAATCAGCCATTTTTCTCCT
1 AAAATCAGCCATTTTTCTCCT
49041475 TCATCCAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.05, T:0.38
Consensus pattern (21 bp):
AAAATCAGCCATTTTTCTCCT
Found at i:49051336 original size:15 final size:15
Alignment explanation
Indices: 49051316--49051361 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
49051306 TTAAATTTAG
*
49051316 TATTTACTTTTTCAA
1 TATTTAATTTTTCAA
*
49051331 TATTTAAATTTTCAGA
1 TATTTAATTTTTCA-A
49051347 TA-TTAATTTTTCAA
1 TATTTAATTTTTCAA
49051361 T
1 T
49051362 TTACCGAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 2 0.07
15 22 0.81
16 3 0.11
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.57
Consensus pattern (15 bp):
TATTTAATTTTTCAA
Found at i:49051526 original size:15 final size:15
Alignment explanation
Indices: 49051508--49051538 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
49051498 TGTTTGATAA
49051508 ATTGAAAATTTAAGT
1 ATTGAAAATTTAAGT
49051523 ATTGAAAATTTAAGT
1 ATTGAAAATTTAAGT
49051538 A
1 A
49051539 CTGGATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.13, T:0.39
Consensus pattern (15 bp):
ATTGAAAATTTAAGT
Found at i:49056502 original size:18 final size:17
Alignment explanation
Indices: 49056468--49056513 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 17
49056458 ACATTTAATT
49056468 AATATTTTAAAATTTAA
1 AATATTTTAAAATTTAA
49056485 AATACTTTTATAAA-TT-A
1 AATA-TTTTA-AAATTTAA
49056502 AATAATTTTAAA
1 AAT-ATTTTAAA
49056514 TAATTTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
16 2 0.08
17 13 0.50
18 8 0.31
19 3 0.12
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
AATATTTTAAAATTTAA
Found at i:49056514 original size:27 final size:25
Alignment explanation
Indices: 49056478--49056545 Score: 68
Period size: 27 Copynumber: 2.7 Consensus size: 25
49056468 AATATTTTAA
* * *
49056478 AATTTAAAATACTTTTATAAATTAAAT
1 AATTTTAAATAATTTT-TAAA-AAAAT
49056505 AATTTTAAATAATTTTTAAAAAAAT
1 AATTTTAAATAATTTTTAAAAAAAT
49056530 AATCTTT--ATAATTTTT
1 AAT-TTTAAATAATTTTT
49056546 TTTGAATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
24 9 0.24
25 7 0.19
26 7 0.19
27 14 0.38
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (25 bp):
AATTTTAAATAATTTTTAAAAAAAT
Found at i:49056518 original size:18 final size:17
Alignment explanation
Indices: 49056471--49056518 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
49056461 TTTAATTAAT
*
49056471 ATTTTAAAATTTAAAATA
1 ATTTTAAAAATT-AAATA
* *
49056489 CTTTTATAAATTAAATA
1 ATTTTAAAAATTAAATA
49056506 ATTTTAAATAATT
1 ATTTTAAA-AATT
49056519 TTTAAAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTTTAAAAATTAAATA
Found at i:49056919 original size:7 final size:7
Alignment explanation
Indices: 49056909--49056952 Score: 65
Period size: 7 Copynumber: 6.6 Consensus size: 7
49056899 TAAAAGTTAA
49056909 AAAAATT
1 AAAAATT
49056916 AAAAATT
1 AAAAATT
49056923 AAAAATT
1 AAAAATT
49056930 AAAAATT
1 AAAAATT
49056937 --AAATT
1 AAAAATT
*
49056942 AAAGATT
1 AAAAATT
49056949 AAAA
1 AAAA
49056953 TAACTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 5 0.15
7 28 0.85
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.27
Consensus pattern (7 bp):
AAAAATT
Found at i:49056942 original size:12 final size:12
Alignment explanation
Indices: 49056911--49056951 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
49056901 AAAGTTAAAA
49056911 AAATTAAAAATT
1 AAATTAAAAATT
49056923 AAAAATTAAAAATT
1 --AAATTAAAAATT
*
49056937 AAATTAAAGATT
1 AAATTAAAAATT
49056949 AAA
1 AAA
49056952 ATAACTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 14 0.54
14 12 0.46
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (12 bp):
AAATTAAAAATT
Found at i:49057688 original size:53 final size:53
Alignment explanation
Indices: 49057627--49057730 Score: 156
Period size: 53 Copynumber: 2.0 Consensus size: 53
49057617 AAAAATAGAT
* * * *
49057627 TAACTCTAATGTTTAGGTTTGTGGTTC-ATCATATTGATTTTAAAAATTATTTC
1 TAACTCTAATATTTAAGCTTGTGG-TCGAACATATTGATTTTAAAAATTATTTC
49057680 TAACTCTAATATTTAAGCTTGTGGTCGAACATATTGATTTTAAAAATTATT
1 TAACTCTAATATTTAAGCTTGTGGTCGAACATATTGATTTTAAAAATTATT
49057731 ATAAATTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
52 2 0.04
53 44 0.96
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (53 bp):
TAACTCTAATATTTAAGCTTGTGGTCGAACATATTGATTTTAAAAATTATTTC
Found at i:49057854 original size:11 final size:11
Alignment explanation
Indices: 49057840--49057887 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
49057830 AATTATTAAA
49057840 AATAATAAGAT
1 AATAATAAGAT
*
49057851 AATAATAAAAT
1 AATAATAAGAT
*
49057862 -AT-TTAA-A-
1 AATAATAAGAT
49057869 AATAATAAGAT
1 AATAATAAGAT
49057880 AATAATAA
1 AATAATAA
49057888 AATATTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
8 3 0.10
9 6 0.20
10 3 0.10
11 18 0.60
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (11 bp):
AATAATAAGAT
Found at i:49057868 original size:29 final size:29
Alignment explanation
Indices: 49057835--49057900 Score: 132
Period size: 29 Copynumber: 2.3 Consensus size: 29
49057825 TAAATAATTA
49057835 TTAAAAATAATAAGATAATAATAAAATAT
1 TTAAAAATAATAAGATAATAATAAAATAT
49057864 TTAAAAATAATAAGATAATAATAAAATAT
1 TTAAAAATAATAAGATAATAATAAAATAT
49057893 TTAAAAAT
1 TTAAAAAT
49057901 TATTAAGGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (29 bp):
TTAAAAATAATAAGATAATAATAAAATAT
Found at i:49058789 original size:11 final size:11
Alignment explanation
Indices: 49058713--49058796 Score: 60
Period size: 12 Copynumber: 7.0 Consensus size: 11
49058703 ATTTTTTTCT
*
49058713 TTTTATTTCTA
1 TTTTATTTTTA
*
49058724 TTTCTATTTTTC
1 TTT-TATTTTTA
*
49058736 TTGTTATTTTTG
1 TT-TTATTTTTA
49058748 TTTTATATTTTACA
1 TTTTAT-TTTT--A
* *
49058762 CTTATATGTTCTA
1 -TTTTAT-TTTTA
49058775 TTTTATTTTTA
1 TTTTATTTTTA
49058786 TTTTATTTTTA
1 TTTTATTTTTA
49058797 CTGTTATTGT
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
11 22 0.38
12 26 0.45
13 2 0.03
15 8 0.14
ACGTcount: A:0.18, C:0.07, G:0.04, T:0.71
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:49058971 original size:2 final size:2
Alignment explanation
Indices: 49058964--49058998 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
49058954 AGCAATTTCA
49058964 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
49058999 TAAATATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:49060446 original size:37 final size:37
Alignment explanation
Indices: 49060401--49060558 Score: 280
Period size: 37 Copynumber: 4.3 Consensus size: 37
49060391 ATATGAAGTT
*
49060401 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
*
49060438 ATCAGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
*
49060475 ATCGGGTCTTACCCGGACATAATCTCCAAACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
*
49060512 ATCGGGTCTTACCCGGACATAATCTCCACATGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
49060549 ATCGGGTCTT
1 ATCGGGTCTT
49060559 TAGAGCTCGG
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 115 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
Found at i:49060755 original size:47 final size:47
Alignment explanation
Indices: 49060677--49061034 Score: 599
Period size: 47 Copynumber: 7.6 Consensus size: 47
49060667 CCCTTCGGGA
* * * * * * *
49060677 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49060724 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49060771 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49060818 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49060865 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
49060914 CTTATCACAAATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49060961 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49061008 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
49061035 TATTCAAATA
Statistics
Matches: 294, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 247 0.84
49 47 0.16
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49060933 original size:143 final size:141
Alignment explanation
Indices: 49060677--49061034 Score: 599
Period size: 143 Copynumber: 2.5 Consensus size: 141
49060667 CCCTTCGGGA
* * * * * * * * *
49060677 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGACCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
49060742 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAATATACACTTTCACATTCATCACATC
49060807 GGCCATTAGGC
131 GGCCATTAGGC
49060818 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
49060883 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAATATACACTTTCACATTCATCACA
*
49060948 TCGGCTATTAGGC
129 TCGGCCATTAGGC
49060961 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
49061026 TTTCACATT
66 TTTCACATT
49061035 TATTCAAATA
Statistics
Matches: 204, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
141 65 0.32
143 139 0.68
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:49077624 original size:46 final size:46
Alignment explanation
Indices: 49077559--49077659 Score: 188
Period size: 46 Copynumber: 2.2 Consensus size: 46
49077549 TATGGTAAAC
49077559 ATAT-ATGT-TTTAAAAAAAAGGTAAGTTTGAATACATGTGATGAT
1 ATATCATGTATTTAAAAAAAAGGTAAGTTTGAATACATGTGATGAT
49077603 ATATCATGTATTTAAAAAAAAGGTAAGTTTGAATACATGTGATGAT
1 ATATCATGTATTTAAAAAAAAGGTAAGTTTGAATACATGTGATGAT
49077649 ATATCATGTAT
1 ATATCATGTAT
49077660 AATGTTAATG
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
44 4 0.07
45 4 0.07
46 47 0.85
ACGTcount: A:0.43, C:0.04, G:0.17, T:0.37
Consensus pattern (46 bp):
ATATCATGTATTTAAAAAAAAGGTAAGTTTGAATACATGTGATGAT
Found at i:49080038 original size:40 final size:40
Alignment explanation
Indices: 49079947--49080172 Score: 225
Period size: 40 Copynumber: 5.7 Consensus size: 40
49079937 TTGAATGATG
* * * *
49079947 TCCGGGCTAAATCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
*
49079987 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
49080027 TCTGGAG-TAAGAT-CCGAAGGCATTTGTTG-GAGATACTAAT
1 TCCGG-GCTAAG-TCCCGAAGGCATTTG-TGCGAGATACTAAA
*
49080067 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
49080107 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
49080148 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49080173 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 16, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
39 5 0.03
40 140 0.88
41 14 0.09
42 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:49080093 original size:80 final size:80
Alignment explanation
Indices: 49079947--49080172 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
49079937 TTGAATGATG
* * * * * *
49079947 TCCGGGCTAAATCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAATTACTATATCCGGGCTAAG-TCCCGAAGGCAT
49080010 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACTAAA
* * *
49080027 TCTGGAG-TAAGAT-CCGAAGGCATTTGTTGGAGA-TACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 TCCGG-GTTAAG-TCCCGAAGGCATTTG-TGCAAATTACTATA-TCCGGGCTAAGTCCCGAAGGC
*
49080088 ATTTGTGCGAGTTACTAAA
62 ATTTGTGCGAGATACTAAA
* *
49080107 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAATTACTATATCCGGGCTAAGTCCCGAAGGCATTT
49080172 G
66 G
49080173 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 14, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
79 8 0.07
80 104 0.85
81 8 0.07
82 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAATTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:49088149 original size:40 final size:40
Alignment explanation
Indices: 49087961--49088185 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
49087951 TTGAATGATG
* * * *
49087961 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
49088001 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
49088040 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
49088080 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
49088120 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
49088161 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49088186 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 39 0.23
40 117 0.70
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:49090854 original size:24 final size:25
Alignment explanation
Indices: 49090827--49090874 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
49090817 CAAAAATAAA
49090827 ATACATGTGTAATAAATAT-TGTAC
1 ATACATGTGTAATAAATATATGTAC
* *
49090851 ATACATTTGTAATACATATATGTA
1 ATACATGTGTAATAAATATATGTA
49090875 TTTACTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (25 bp):
ATACATGTGTAATAAATATATGTAC
Found at i:49095328 original size:18 final size:18
Alignment explanation
Indices: 49095271--49095330 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
49095261 GACTGTCTGC
*
49095271 TACTGAATAATTGACTAT
1 TACTGAATAAATGACTAT
*
49095289 TACAGAATAAAAT-ACTGA-
1 TACTGAAT-AAATGACT-AT
*
49095307 TACTGAATAAATGAATAT
1 TACTGAATAAATGACTAT
49095325 TACTGA
1 TACTGA
49095331 TTAACCGATT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 5 0.15
18 25 0.74
19 4 0.12
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.32
Consensus pattern (18 bp):
TACTGAATAAATGACTAT
Found at i:49104153 original size:18 final size:18
Alignment explanation
Indices: 49104109--49104147 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
49104099 GAAAACCAAA
49104109 AAGCTTAAAGACTTATCT
1 AAGCTTAAAGACTTATCT
49104127 AAGCTTAAAGACTTATCT
1 AAGCTTAAAGACTTATCT
49104145 AAG
1 AAG
49104148 TCTAAATGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (18 bp):
AAGCTTAAAGACTTATCT
Found at i:49113419 original size:26 final size:26
Alignment explanation
Indices: 49113385--49113435 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
49113375 AATAAAAATT
*
49113385 ATTAATAATTCAAT-GAATTAAAAAA
1 ATTAATAATTCAATAAAATTAAAAAA
*
49113410 ATTAATTAATTGAATAAAATTAAAAA
1 ATTAA-TAATTCAATAAAATTAAAAA
49113436 TTAAGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 8 0.36
27 9 0.41
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (26 bp):
ATTAATAATTCAATAAAATTAAAAAA
Found at i:49116137 original size:36 final size:36
Alignment explanation
Indices: 49116090--49116162 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
49116080 ACTCTTGAAG
*
49116090 TAGAAGCACCCACTAGATCAGCCTCAGCTTAGCATC
1 TAGAAGCACCCACCAGATCAGCCTCAGCTTAGCATC
*
49116126 TAGAAGCACCCACCGGATCAGCCTCAGCTTAGCATC
1 TAGAAGCACCCACCAGATCAGCCTCAGCTTAGCATC
49116162 T
1 T
49116163 TTCTTGGCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.34, G:0.18, T:0.19
Consensus pattern (36 bp):
TAGAAGCACCCACCAGATCAGCCTCAGCTTAGCATC
Found at i:49123579 original size:45 final size:45
Alignment explanation
Indices: 49123530--49123703 Score: 190
Period size: 45 Copynumber: 3.8 Consensus size: 45
49123520 TGTTTGGGCA
*
49123530 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACG
*** * * * *
49123575 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-A-ACG
*
49123622 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACG
* * *
49123667 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49123704 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
45 64 0.60
46 14 0.13
47 28 0.26
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACG
Found at i:49123683 original size:92 final size:92
Alignment explanation
Indices: 49123526--49123696 Score: 290
Period size: 92 Copynumber: 1.9 Consensus size: 92
49123516 AGGATGTTTG
* *
49123526 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGTCCGAACTCGTTGAGT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCGAACTCGTTGAGT
49123591 TGAGTCCGAGTTCGAGAGATGTAACTA
66 TGAGTCCGAGTTCGAGAGATGTAACTA
* *
49123618 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGCCCGAACTCGTTGAG
49123682 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
49123697 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
91 9 0.12
92 65 0.88
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (92 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:49126664 original size:14 final size:15
Alignment explanation
Indices: 49126615--49126664 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
49126605 GTATCTTGGG
*
49126615 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
49126630 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
49126645 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
49126659 TTTCTT
1 TTTCTT
49126665 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:49129097 original size:46 final size:46
Alignment explanation
Indices: 49129047--49129222 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
49129037 TGTTTGGGCA
*
49129047 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
49129093 TCCGAACTCGTTGAGTTAAGTCCGAGTTCA---A-GAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A--CG
* * *
49129140 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
49129186 GCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49129223 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.06
45 1 0.01
46 64 0.59
47 28 0.26
48 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:49129202 original size:93 final size:93
Alignment explanation
Indices: 49129043--49129214 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
49129033 AGGATGTTTG
* * *
49129043 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGGCCGAACTCGTTGAG
49129108 TTAAGTCCGAGTTCAAGAGATGTAACTA
66 TTAAGTCCGAGTTCAAGAGATGTAACTA
* * *
49129136 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGGCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGGCCGAACTCGTTGAG
*
49129201 TTGAGTCCGAGTTC
66 TTAAGTCCGAGTTC
49129215 GCTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGGCCGAACTCGTTGAG
TTAAGTCCGAGTTCAAGAGATGTAACTA
Found at i:49137475 original size:13 final size:13
Alignment explanation
Indices: 49137457--49137486 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
49137447 CTAGCAATCA
49137457 TGTCACACGGCCG
1 TGTCACACGGCCG
*
49137470 TGTCACACGGGCG
1 TGTCACACGGCCG
49137483 TGTC
1 TGTC
49137487 CCTGCTCAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.33, G:0.33, T:0.20
Consensus pattern (13 bp):
TGTCACACGGCCG
Found at i:49147334 original size:53 final size:54
Alignment explanation
Indices: 49147266--49147472 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
49147256 TTCCTTTTTA
* * * * *
49147266 AACTTACCATTTCCATGTCTTGACATCGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * *
49147319 AACTCACCATTTCCATGCCTTGGCATGGTCTTATATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
49147373 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
49147428 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
49147473 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 30, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 44 0.36
54 38 0.31
55 40 0.33
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:49154594 original size:53 final size:54
Alignment explanation
Indices: 49154509--49154704 Score: 173
Period size: 53 Copynumber: 3.6 Consensus size: 54
49154499 TTCCTTTTTA
* * ** *
49154509 AACTTCCCATTGCCATGTCTTGACATCATCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * *
49154562 AACTCACCATTGCCATGCCTTGGCATGGTCTTATATGGGATCCTTGCCATATAG
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * * *
49154616 TAGA-TTATCAATT-CCATGTCTTGACAAGGTCTTACATGATTTCCTTGCATTGTAG
1 -A-ACTTA-CCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
49154671 AACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 AACTTACCATTGCCATGCCTTGACATGGTCTTAC
49154705 TTAGAATCCA
Statistics
Matches: 110, Mismatches: 27, Indels: 11
0.74 0.18 0.07
Matches are distributed among these distances:
53 46 0.42
54 24 0.22
55 35 0.32
56 5 0.05
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (54 bp):
AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:49154704 original size:54 final size:57
Alignment explanation
Indices: 49154561--49154704 Score: 154
Period size: 55 Copynumber: 2.6 Consensus size: 57
49154551 CTTGCCTTAT
* * * *
49154561 GAACTCACCATTGCCATGCCTTGGCATGGTCTTATATGGGATCCTTGCCATATAGTA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGAGATCCTTGCCATATAGTA
* * * * * **
49154618 G-A-TTATCAATTCCATGTCTTGACAAGGTCTTACATGATTTCCTTG-CAT-T-GTA
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGAGATCCTTGCCATATAGTA
49154670 GAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 GAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
49154705 TTAGAATCCA
Statistics
Matches: 69, Mismatches: 16, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
52 4 0.06
53 2 0.03
54 29 0.42
55 32 0.46
56 1 0.01
57 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (57 bp):
GAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGAGATCCTTGCCATATAGTA
Found at i:49160031 original size:27 final size:27
Alignment explanation
Indices: 49160001--49160142 Score: 178
Period size: 27 Copynumber: 5.3 Consensus size: 27
49159991 CTGAAATGCA
** *
49160001 CTCGATTTGTAGAATTACCATTTTATC
1 CTCGATTTACAGAATTACCATTTTACC
*
49160028 CTCGATTTATAGAATTACCATTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
* *
49160055 CTCGATTTACAGAATTATCGTTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
*
49160082 CTCGATTTACAAAATTACCATTTTACC
1 CTCGATTTACAGAATTACCATTTTACC
* * *
49160109 CTC-AGTTTACAAAATTATCGTTTTACC
1 CTCGA-TTTACAGAATTACCATTTTACC
49160136 CTCGATT
1 CTCGATT
49160143 GTGAGATTAC
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 101 0.98
28 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (27 bp):
CTCGATTTACAGAATTACCATTTTACC
Found at i:49160204 original size:27 final size:27
Alignment explanation
Indices: 49160174--49160378 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
49160164 TGTAGGATAG
49160174 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
49160201 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
49160228 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
49160255 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
49160282 AATTACCAAAATACCCCTTGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
49160309 AATTACCGAAATA-CCCTCAATTTTTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
49160336 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
*
49160363 AATTACAAAAATACCC
1 AATTACCAAAATACCC
49160379 TTGACTTTCT
Statistics
Matches: 153, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 4 0.03
27 145 0.95
28 4 0.03
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:49160213 original size:54 final size:52
Alignment explanation
Indices: 49160148--49160379 Score: 207
Period size: 54 Copynumber: 4.3 Consensus size: 52
49160138 CGATTGTGAG
* * *
49160148 ATTACTGAAATACCACTGTAGGATAGAATTACCAAAATACCCCTAGTTTGTAAA
1 ATTACCGAAATACC-CTGTATG-TAAAATTACCAAAATACCCCTAGTTTGTAAA
* * * * * *
49160202 ATTACCAAAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGTTTGTGAA
1 ATTACCGAAATA-CCCT-GTATGTAAAATTACCAAAATACCCCTAGTTTGTAAA
*
49160256 ATTACCGAAATACCCT-TAATTTGTAAAATTACCAAAATACCCCTTGTTTGTAAA
1 ATTACCGAAATACCCTGT-A--TGTAAAATTACCAAAATACCCCTAGTTTGTAAA
* * * **
49160310 ATTACCGAAATACCCTCAATTTTTAAAATTACCAAAATACCCCT-GATTTACAAA
1 ATTACCGAAATACCCT--GTATGTAAAATTACCAAAATACCCCTAG-TTTGTAAA
**
49160364 ATTACAAAAATACCCT
1 ATTACCGAAATACCCT
49160380 TGACTTTCTA
Statistics
Matches: 148, Mismatches: 21, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
51 1 0.01
53 5 0.03
54 136 0.92
55 5 0.03
57 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (52 bp):
ATTACCGAAATACCCTGTATGTAAAATTACCAAAATACCCCTAGTTTGTAAA
Found at i:49160261 original size:81 final size:81
Alignment explanation
Indices: 49160148--49160461 Score: 292
Period size: 81 Copynumber: 3.9 Consensus size: 81
49160138 CGATTGTGAG
* ** *
49160148 ATTACTGAAATACCACT-GTAGGATAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 ATTACCGAAATACCACTGGT-TTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
49160212 TACCCCTAGTTTGTAAA
65 TACCCCTAGTTTGTAAA
* * * * *
49160229 ATTACCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAATTTGTAAAATTACCAAAAT
1 ATTACCGAAATACCACTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAAT
*
49160294 ACCCCTTGTTTGTAAA
66 ACCCCTAGTTTGTAAA
** * ** *
49160310 ATTACCGAAATACC-CTCAATTTTTAAAATTACCAAAATACCCCT-GATTTACAAAATTACAAAA
1 ATTACCGAAATACCACT-GGTTTATAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAA
* * *
49160373 ATACCCTTGACTTTCTAAAA
64 ATACCCCT-AGTTTGT-AAA
** * * ** * * * * *
49160393 ATTATAGAAATACCATTGGTTTAAAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAAC
1 ATTACCGAAATACCACTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAAT
49160458 ACCC
66 ACCC
49160462 TTGTAGGATG
Statistics
Matches: 186, Mismatches: 40, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
80 2 0.01
81 124 0.67
82 6 0.03
83 52 0.28
84 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
ATTACCGAAATACCACTGGTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAAT
ACCCCTAGTTTGTAAA
Found at i:49160403 original size:29 final size:27
Alignment explanation
Indices: 49160344--49160437 Score: 82
Period size: 27 Copynumber: 3.4 Consensus size: 27
49160334 AAAATTACCA
* * * * *
49160344 AAATACCCCTGATTTACAAAATTACAA
1 AAATACCCTTGCTTTAAAAAATTATAG
*
49160371 AAATACCCTTGACTTTCTAAAAATTATAG
1 AAATACCCTTG-CTTT-AAAAAATTATAG
* *
49160400 AAATACCATTGGTTTAAAAAATTACT-G
1 AAATACCCTTGCTTTAAAAAATTA-TAG
49160427 AAATACCCTTG
1 AAATACCCTTG
49160438 GTTTGTAGAT
Statistics
Matches: 54, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
27 29 0.54
28 7 0.13
29 18 0.33
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (27 bp):
AAATACCCTTGCTTTAAAAAATTATAG
Found at i:49161407 original size:25 final size:24
Alignment explanation
Indices: 49161369--49161438 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 24
49161359 AGGAAGTACT
*
49161369 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
49161393 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
49161418 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTTTGCCCCAGTT
49161439 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:49161615 original size:42 final size:42
Alignment explanation
Indices: 49161568--49161701 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
49161558 TAGTCTCCCT
49161568 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
49161610 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
49161652 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
49161694 AAATGGGC
1 AAATGGGC
49161702 CTAAGGGCCA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:49161760 original size:31 final size:31
Alignment explanation
Indices: 49161725--49161803 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
49161715 CGTTTACAGT
49161725 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
49161756 AAAGGTTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
49161787 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
49161804 AACTGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:49165469 original size:32 final size:32
Alignment explanation
Indices: 49165430--49165496 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
49165420 TAACCTATTT
49165430 AAAAGTTAGAACCAAACTATCATACATCAATA
1 AAAAGTTAGAACCAAACTATCATACATCAATA
49165462 AAAAGTTAGAACCAAACTATCATACATCAATA
1 AAAAGTTAGAACCAAACTATCATACATCAATA
49165494 AAA
1 AAA
49165497 TAGTGCATGC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.55, C:0.18, G:0.06, T:0.21
Consensus pattern (32 bp):
AAAAGTTAGAACCAAACTATCATACATCAATA
Found at i:49170090 original size:36 final size:36
Alignment explanation
Indices: 49170017--49170090 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
49170007 GTATGTGATA
**
49170017 GTTTAAAGTTTGGTAGCTTAGCATAATGCTTGGTAT
1 GTTTAAAGTTTGGTAGCTTAGCATAATGCTTCATAT
*
49170053 GTTTAAAGTTTGTTAGCTTAGCATAATGCTTCATAT
1 GTTTAAAGTTTGGTAGCTTAGCATAATGCTTCATAT
49170089 GT
1 GT
49170091 GCTTAGCTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (36 bp):
GTTTAAAGTTTGGTAGCTTAGCATAATGCTTCATAT
Found at i:49177426 original size:28 final size:28
Alignment explanation
Indices: 49177361--49177459 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
49177351 CATGAGATTG
* * *
49177361 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
49177390 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
49177418 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
49177446 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49177460 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:49185420 original size:28 final size:28
Alignment explanation
Indices: 49185355--49185453 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
49185345 CATGAGATTG
* * *
49185355 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
49185384 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
49185412 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
49185440 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49185454 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:49196927 original size:36 final size:36
Alignment explanation
Indices: 49196875--49196948 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
49196865 GTATGTGATA
49196875 GTTTAAAGTTTAGTAGCTTAGCATAATGCTTGGTAT
1 GTTTAAAGTTTAGTAGCTTAGCATAATGCTTGGTAT
* *
49196911 GTTTAAAGTTTGGTAGCTTCGCATAATGCTTGGTAT
1 GTTTAAAGTTTAGTAGCTTAGCATAATGCTTGGTAT
49196947 GT
1 GT
49196949 GCTTAGCTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.24, C:0.09, G:0.24, T:0.42
Consensus pattern (36 bp):
GTTTAAAGTTTAGTAGCTTAGCATAATGCTTGGTAT
Found at i:49217254 original size:40 final size:39
Alignment explanation
Indices: 49217210--49217314 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
49217200 AGTGACCATA
*
49217210 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
49217250 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
49217288 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
49217315 AACGAGTAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:49217271 original size:39 final size:40
Alignment explanation
Indices: 49217173--49217314 Score: 150
Period size: 40 Copynumber: 3.6 Consensus size: 40
49217163 AATGATGTCT
* * *
49217173 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACC
* *
49217213 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACC
*
49217253 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
*
49217292 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
49217315 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
39 34 0.39
40 43 0.49
41 10 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
Found at i:49217333 original size:79 final size:80
Alignment explanation
Indices: 49217173--49217320 Score: 185
Period size: 79 Copynumber: 1.9 Consensus size: 80
49217163 AATGATGTCT
* **
49217173 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
49217238 CGAGATACTAATTCC
66 CGAGATACTAATTCC
* * * * *
49217253 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATTTG
49217315 AACGAG
64 AACGAG
49217321 TAGCTATATC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.72
80 15 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTGAA
CGAGATACTAATTCC
Found at i:49217608 original size:47 final size:47
Alignment explanation
Indices: 49217539--49217706 Score: 255
Period size: 47 Copynumber: 3.6 Consensus size: 47
49217529 AAGGGTTGGT
49217539 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
49217586 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
49217633 AATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
49217680 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
49217707 TCCCGAAGGG
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 109 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:49221966 original size:23 final size:24
Alignment explanation
Indices: 49221938--49221990 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
49221928 TTGAGTAATC
49221938 CTGAT-ATAGCTCTCT-CGAGCATT
1 CTGATAATAGCTC-CTGCGAGCATT
*
49221961 CTGATAAATAGTTCCTGCGAGCATT
1 CTGAT-AATAGCTCCTGCGAGCATT
49221986 CTGAT
1 CTGAT
49221991 CGGTAGTGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 5 0.19
24 2 0.08
25 19 0.73
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (24 bp):
CTGATAATAGCTCCTGCGAGCATT
Found at i:49224047 original size:49 final size:49
Alignment explanation
Indices: 49223954--49224055 Score: 123
Period size: 49 Copynumber: 2.1 Consensus size: 49
49223944 GACATTCTAG
* * * * * *
49223954 AATGGATAAATAGTGATAAGAGTGTAGATAGTGGAAAACTAAGTTTAGC
1 AATGGATAAATAGTGATAAAAGTGTAGACACTAGAAAACCAAGTTTAGA
* * *
49224003 AATGTATAAATAGTGATAAAATTGTAGACACTAGAAGACCAAGTTTAGA
1 AATGGATAAATAGTGATAAAAGTGTAGACACTAGAAAACCAAGTTTAGA
49224052 AATG
1 AATG
49224056 CATAGCATAA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.45, C:0.06, G:0.23, T:0.26
Consensus pattern (49 bp):
AATGGATAAATAGTGATAAAAGTGTAGACACTAGAAAACCAAGTTTAGA
Found at i:49230885 original size:40 final size:40
Alignment explanation
Indices: 49230778--49230980 Score: 243
Period size: 40 Copynumber: 5.1 Consensus size: 40
49230768 CGGATGATAA
* * *
49230778 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* * *
49230818 TCGGGCTAAG-CCCGAAGGAAATT-GTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGG-CATTCGTGCGAGTTACTATAT
49230857 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * *
49230897 CCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* **
49230937 CCGGGCTATGTCCCGAAGGCATTCAAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
49230977 CCGG
1 CCGG
49230981 TTGAATTTCG
Statistics
Matches: 141, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 33 0.23
40 108 0.77
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:49234938 original size:82 final size:81
Alignment explanation
Indices: 49234822--49234977 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
49234812 AAATTGTACA
* * * *
49234822 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
49234886 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
49234903 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
49234968 TGCGAGTTGA
65 TGCGAATTGA
49234978 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:49234945 original size:55 final size:52
Alignment explanation
Indices: 49234821--49234974 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
49234811 TAAATTGTAC
* *
49234821 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
49234874 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
49234929 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
49234975 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:49234979 original size:27 final size:27
Alignment explanation
Indices: 49234822--49234977 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
49234812 AAATTGTACA
*
49234822 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
49234849 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
49234876 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
49234903 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
49234931 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
49234958 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
49234978 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:49234988 original size:27 final size:27
Alignment explanation
Indices: 49234814--49234998 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
49234804 GCGGGATTAA
*
49234814 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
49234841 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
49234868 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
49234895 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
49234923 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
49234950 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
49234977 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
49234999 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:49234989 original size:82 final size:81
Alignment explanation
Indices: 49234814--49234998 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
49234804 GCGGGATTAA
* * * *
49234814 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
49234879 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
49234895 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
49234959 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
49234977 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
49234999 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:49242841 original size:82 final size:81
Alignment explanation
Indices: 49242725--49242880 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
49242715 AAATTGTACA
* * * *
49242725 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
49242789 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
49242806 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
49242871 TGCGAGTTGA
65 TGCGAATTGA
49242881 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:49242848 original size:55 final size:52
Alignment explanation
Indices: 49242724--49242877 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
49242714 TAAATTGTAC
* *
49242724 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
49242777 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
49242832 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
49242878 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:49242882 original size:27 final size:27
Alignment explanation
Indices: 49242725--49242880 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
49242715 AAATTGTACA
*
49242725 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
49242752 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
49242779 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
49242806 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
49242834 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
49242861 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
49242881 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:49242891 original size:27 final size:27
Alignment explanation
Indices: 49242717--49242901 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
49242707 GCGGGATTAA
*
49242717 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
49242744 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
49242771 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
49242798 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
49242826 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
49242853 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
49242880 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
49242902 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:49242892 original size:82 final size:81
Alignment explanation
Indices: 49242717--49242901 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
49242707 GCGGGATTAA
* * * *
49242717 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
49242782 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
49242798 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
49242862 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
49242880 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
49242902 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:49245440 original size:19 final size:19
Alignment explanation
Indices: 49245418--49245463 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
49245408 TGTATCAATA
*
49245418 GCCAACATAACAATCATAT
1 GCCAACATAACAATCATAG
* * *
49245437 GCCATCATAACCATTATAG
1 GCCAACATAACAATCATAG
49245456 GCCAACAT
1 GCCAACAT
49245464 TCGATGGCCA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.41, C:0.28, G:0.09, T:0.22
Consensus pattern (19 bp):
GCCAACATAACAATCATAG
Found at i:49246108 original size:41 final size:41
Alignment explanation
Indices: 49246063--49246154 Score: 107
Period size: 41 Copynumber: 2.2 Consensus size: 41
49246053 GCCTAGCTAT
* *
49246063 GTCTTACGCGAAATCTCAT-ATCAATG-CATATCCCAGATATG
1 GTCTTACAC-AAATCTCATAAT-AATGCCATATCCCAAATATG
* * *
49246104 GTCTTACACAAGTCTTATAATGATGCCATATCCCAAATATG
1 GTCTTACACAAATCTCATAATAATGCCATATCCCAAATATG
49246145 GTCTTACACA
1 GTCTTACACA
49246155 TAGTTCCGGT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
40 10 0.23
41 34 0.77
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (41 bp):
GTCTTACACAAATCTCATAATAATGCCATATCCCAAATATG
Found at i:49250130 original size:22 final size:23
Alignment explanation
Indices: 49250082--49250158 Score: 68
Period size: 23 Copynumber: 3.4 Consensus size: 23
49250072 TAGCTGATTG
** *
49250082 GAGCTTACCGTTTTAGCTCG-TA
1 GAGCTTACTATTTCAGCTCGATA
**
49250104 TGAGCTTACTA-TTGGGCTCGATA
1 -GAGCTTACTATTTCAGCTCGATA
* *
49250127 GAGCTTACCATTTCAGCTCAATA
1 GAGCTTACTATTTCAGCTCGATA
49250150 GAGCTTACT
1 GAGCTTACT
49250159 GTTCATTAGC
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
22 16 0.37
23 27 0.63
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (23 bp):
GAGCTTACTATTTCAGCTCGATA
Found at i:49252757 original size:40 final size:40
Alignment explanation
Indices: 49252680--49252894 Score: 251
Period size: 40 Copynumber: 5.4 Consensus size: 40
49252670 AAACCAAGTA
* *
49252680 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCC-CTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAAC-CCACACAAATG
*
49252719 CCTTCGGGACTTAGCCCGGTTATAGTAACCCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCACACAAATG
* * *
49252759 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCACACAAATG
* * *
49252799 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCACACAAATG
* * *
49252839 CCTTCGGGGCTTAGCCCGGA-ATTAGTCA-CTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACCCA-CACAAATG
49252879 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
49252895 TGATTATCAT
Statistics
Matches: 155, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
39 17 0.11
40 138 0.89
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACCCACACAAATG
Found at i:49252827 original size:80 final size:79
Alignment explanation
Indices: 49252680--49252896 Score: 294
Period size: 80 Copynumber: 2.7 Consensus size: 79
49252670 AAACCAAGTA
* * * * *
49252680 CCTTCGGGATTTAG-CCGGATATAGCTACTCCCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCTGGATATAG
49252744 TAACCCACACAAATG
65 TAACCCACACAAATG
*
49252759 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCTGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCTGGATATAG
* *
49252824 TAACTCGCACAAATG
65 TAACCCACACAAATG
* *
49252839 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCTG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCTG
49252897 ATTATCATCT
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
79 14 0.11
80 109 0.89
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCTGGATATAGT
AACCCACACAAATG
Found at i:49261055 original size:28 final size:28
Alignment explanation
Indices: 49261010--49261071 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
49261000 TTATTCAGTA
* *
49261010 ACAGT-ACAGTCTGGGCCTTAGCCCTAT
1 ACAGTAACAGTCTGGGCCTAAGCCCAAT
*
49261037 ACAGTAACAGTGTGGGCCTAAGCCCAAT
1 ACAGTAACAGTCTGGGCCTAAGCCCAAT
*
49261065 ATAGTAA
1 ACAGTAA
49261072 AAGTACAGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (28 bp):
ACAGTAACAGTCTGGGCCTAAGCCCAAT
Found at i:49261266 original size:27 final size:27
Alignment explanation
Indices: 49261236--49261298 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
49261226 CCATAAACGG
*
49261236 GTAAATGTGGCAAAGCCACCAGTAATA
1 GTAAATGTGGCAAAGCCACCAGTAACA
* * **
49261263 GTAATTGTGGCATAGTTACCAGTAACA
1 GTAAATGTGGCAAAGCCACCAGTAACA
*
49261290 GTGAATGTG
1 GTAAATGTG
49261299 ACATAGTACT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (27 bp):
GTAAATGTGGCAAAGCCACCAGTAACA
Found at i:49261303 original size:27 final size:27
Alignment explanation
Indices: 49261253--49261305 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
49261243 TGGCAAAGCC
* *
49261253 ACCAGTAATAGTAATTGTGGCATAGTT
1 ACCAGTAACAGTAATTGTGACATAGTT
49261280 ACCAGTAACAGTGAA-TGTGACATAGT
1 ACCAGTAACAGT-AATTGTGACATAGT
49261306 ACTAGTGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (27 bp):
ACCAGTAACAGTAATTGTGACATAGTT
Found at i:49261484 original size:27 final size:27
Alignment explanation
Indices: 49261454--49261599 Score: 179
Period size: 27 Copynumber: 5.4 Consensus size: 27
49261444 AGGGCTACTC
*
49261454 GTCATTTTACCCTAC-AGAGGCATTACA
1 GTCATTTTACCCTACAAG-GGTATTACA
* *
49261481 GTCATTTTATCCTACAAGGGTATTACG
1 GTCATTTTACCCTACAAGGGTATTACA
* **
49261508 GTCATTTTACCCTACACGGGTATTATG
1 GTCATTTTACCCTACAAGGGTATTACA
*
49261535 GTCATTTTATCCTACAAGGGTATTAC-
1 GTCATTTTACCCTACAAGGGTATTACA
* *
49261561 GATTATTTTACCCTATAAGGGTATTACA
1 G-TCATTTTACCCTACAAGGGTATTACA
49261589 GTCATTTTACC
1 GTCATTTTACC
49261600 TATTTTGGGG
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.01
27 99 0.96
28 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCCTACAAGGGTATTACA
Found at i:49261514 original size:54 final size:54
Alignment explanation
Indices: 49261454--49261601 Score: 203
Period size: 54 Copynumber: 2.8 Consensus size: 54
49261444 AGGGCTACTC
*
49261454 GTCATTTTACCCTACAGAGGCATTACAGTCATTTTATCCTACAAGGGTATTACG
1 GTCATTTTACCCTACAGAGGTATTACAGTCATTTTATCCTACAAGGGTATTACG
**
49261508 GTCATTTTACCCTACACG-GGTATTATGGTCATTTTATCCTACAAGGGTATTACG
1 GTCATTTTACCCTACA-GAGGTATTACAGTCATTTTATCCTACAAGGGTATTACG
* * *
49261562 ATTATTTTACCCTATA-AGGGTATTACAGTCATTTTA-CCTA
1 GTCATTTTACCCTACAGA-GGTATTACAGTCATTTTATCCTA
49261602 TTTTGGGGTT
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
53 4 0.05
54 78 0.94
55 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (54 bp):
GTCATTTTACCCTACAGAGGTATTACAGTCATTTTATCCTACAAGGGTATTACG
Found at i:49265296 original size:33 final size:33
Alignment explanation
Indices: 49265230--49265333 Score: 94
Period size: 33 Copynumber: 3.3 Consensus size: 33
49265220 ACAGTGCATG
* * *
49265230 CAGTAACAGTCTAGGCCTGAGCCCTACT-CAGTAA
1 CAGT-ACAGTCTGGGCCTAAGCCCTA-TATAGTAA
*
49265264 CAGTACAGTCTGGGCCTTAGCCCTATATAGTAA
1 CAGTACAGTCTGGGCCTAAGCCCTATATAGTAA
* *
49265297 CAGT---G--TGGGCCTAAGCCCAAAATAGTAA
1 CAGTACAGTCTGGGCCTAAGCCCTATATAGTAA
49265325 CAGTACAGT
1 CAGTACAGT
49265334 GTAATGCAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
28 24 0.41
30 1 0.02
31 1 0.02
32 1 0.02
33 28 0.47
34 4 0.07
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (33 bp):
CAGTACAGTCTGGGCCTAAGCCCTATATAGTAA
Found at i:49265305 original size:28 final size:28
Alignment explanation
Indices: 49265268--49265328 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
49265258 CAGTAACAGT
* * *
49265268 ACAGTCTGGGCCTTAGCCCTATATAGTA
1 ACAGTCTGGGCCTAAGCCCAAAATAGTA
*
49265296 ACAGTGTGGGCCTAAGCCCAAAATAGTA
1 ACAGTCTGGGCCTAAGCCCAAAATAGTA
49265324 ACAGT
1 ACAGT
49265329 ACAGTGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCAAAATAGTA
Found at i:49265509 original size:27 final size:27
Alignment explanation
Indices: 49265479--49265565 Score: 75
Period size: 27 Copynumber: 3.2 Consensus size: 27
49265469 AGCATAGTTG
*
49265479 CCAGAAACAATAAATGTGACAAAGCCA
1 CCAGTAACAATAAATGTGACAAAGCCA
* * * * *
49265506 CCAGTATCAGTAATTGTGGCATAGCCA
1 CCAGTAACAATAAATGTGACAAAGCCA
* * * * *
49265533 CCAGTAACAGTGAATATGACATAGTCA
1 CCAGTAACAATAAATGTGACAAAGCCA
49265560 CCAGTA
1 CCAGTA
49265566 CAGTACTTCA
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (27 bp):
CCAGTAACAATAAATGTGACAAAGCCA
Found at i:49265733 original size:27 final size:27
Alignment explanation
Indices: 49265703--49265901 Score: 168
Period size: 27 Copynumber: 7.4 Consensus size: 27
49265693 AGGGCTACTC
* **
49265703 GTCATTTTGCCATACAGGGGTATTATA
1 GTCATTTTACCATACAGGGGTATTACG
* *
49265730 GTCATTTTACCCA-ATAGGGGCATTACG
1 GTCATTTTA-CCATACAGGGGTATTACG
49265757 GTCATTTTAACC-TACAGGGGTATTACG
1 GTCATTTT-ACCATACAGGGGTATTACG
* * *
49265784 GCCATTTTACCCTACAGGGGTGTTACG
1 GTCATTTTACCATACAGGGGTATTACG
* * *
49265811 GTTATTTTACCCTACAGGGGTATTATG
1 GTCATTTTACCATACAGGGGTATTACG
* * * * **
49265838 GTCATTTTACCTTATAAGGGTATCAAA
1 GTCATTTTACCATACAGGGGTATTACG
* * *
49265865 GTTATTTTACCCTAGAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
49265892 ATTATTTTAC
1 GTCATTTTAC
49265902 AGTTATTTTG
Statistics
Matches: 140, Mismatches: 28, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
26 3 0.02
27 133 0.95
28 4 0.03
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:49265841 original size:81 final size:81
Alignment explanation
Indices: 49265705--49265901 Score: 207
Period size: 81 Copynumber: 2.4 Consensus size: 81
49265695 GGCTACTCGT
* * ** * *
49265705 CATTTTGCCATACAGGGGTATTATAGTCATTTTACCCAATAGGGGCATTACGGTCATTTTAACC-
1 CATTTTACCCTACAGGGGTATTACGGTTATTTTACCCAACAGGGGCATTACGGTCATTTT-ACCT
* * **
49265769 TACAGGGGTATTACGGC
65 TACAAGGGTATCAAAGC
* * * *
49265786 CATTTTACCCTACAGGGGTGTTACGGTTATTTTACCCTACAGGGGTATTATGGTCATTTTACCTT
1 CATTTTACCCTACAGGGGTATTACGGTTATTTTACCCAACAGGGGCATTACGGTCATTTTACCTT
* *
49265851 ATAAGGGTATCAAAGT
66 ACAAGGGTATCAAAGC
* * *
49265867 TATTTTACCCTAGAGGGGTATTACGATTATTTTAC
1 CATTTTACCCTACAGGGGTATTACGGTTATTTTAC
49265902 AGTTATTTTG
Statistics
Matches: 95, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
80 3 0.03
81 92 0.97
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (81 bp):
CATTTTACCCTACAGGGGTATTACGGTTATTTTACCCAACAGGGGCATTACGGTCATTTTACCTT
ACAAGGGTATCAAAGC
Found at i:49265869 original size:54 final size:54
Alignment explanation
Indices: 49265706--49265889 Score: 215
Period size: 54 Copynumber: 3.4 Consensus size: 54
49265696 GCTACTCGTC
* * * * * *
49265706 ATTTTGCCATACAGGGGTATTATAGTCATTTTACCCAATAGGGGCATTACGGTC
1 ATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTATAGGGGTATTACGGTT
* * * * *
49265760 ATTTTAACCTACAGGGGTATTACGGCCATTTTACCCTACAGGGGTGTTACGGTT
1 ATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTATAGGGGTATTACGGTT
* * * **
49265814 ATTTTACCCTACAGGGGTATTATGGTCATTTTACCTTATAAGGGTATCAAAGTT
1 ATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTATAGGGGTATTACGGTT
*
49265868 ATTTTACCCTAGAGGGGTATTA
1 ATTTTACCCTACAGGGGTATTA
49265890 CGATTATTTT
Statistics
Matches: 108, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 108 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (54 bp):
ATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTATAGGGGTATTACGGTT
Found at i:49269632 original size:27 final size:26
Alignment explanation
Indices: 49269602--49269673 Score: 63
Period size: 27 Copynumber: 2.7 Consensus size: 26
49269592 AGCATAGCTG
49269602 CTAGAAATAGTAAATGTGGCAAAGCCA
1 CTAG-AATAGTAAATGTGGCAAAGCCA
* * * *
49269629 CTAGTATCAGTAATTGGGGCATAGCCA
1 CTAGAAT-AGTAAATGTGGCAAAGCCA
* *
49269656 CAAGTAACAGTAAATGTG
1 CTAG-AATAGTAAATGTG
49269674 ACATAGTCAC
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
26 2 0.06
27 31 0.91
28 1 0.03
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (26 bp):
CTAGAATAGTAAATGTGGCAAAGCCA
Found at i:49269678 original size:27 final size:27
Alignment explanation
Indices: 49269610--49269679 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
49269600 TGCTAGAAAT
* * *
49269610 AGTAAATGTGGCAAAGCCACTAGTATC
1 AGTAAATGTGGCATAGCCACAAGTAAC
* *
49269637 AGTAATTGGGGCATAGCCACAAGTAAC
1 AGTAAATGTGGCATAGCCACAAGTAAC
*
49269664 AGTAAATGTGACATAG
1 AGTAAATGTGGCATAG
49269680 TCACCAATAC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (27 bp):
AGTAAATGTGGCATAGCCACAAGTAAC
Found at i:49269872 original size:27 final size:27
Alignment explanation
Indices: 49269830--49270178 Score: 358
Period size: 27 Copynumber: 13.0 Consensus size: 27
49269820 AAGGCTACTC
* * *
49269830 GTCATTTTTCCATACAGGGGTATCACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
49269857 GTTATTTTACCGTACAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
** *
49269884 GTTGTTTTACCCTACAGGGATATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * * *
49269911 TTCATTTTACTCGAAAGGGGTGTTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
49269938 ATCGTTTTACCCTACATGGGTATTGCG
1 GTCATTTTACCCTACAGGGGTATTACG
*
49269965 GTCATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
*
49269992 GTCATTTTACCCTACTGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *** *
49270019 GTTATTTTACTAAATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
49270046 ATCATTTTATCCT-CAAGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
49270072 GTTATTTTACCCCACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
*
49270099 GTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
49270126 ATCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
49270153 ATCATTTTACCTTACAGGGGTATTAC
1 GTCATTTTACCCTACAGGGGTATTAC
49270179 AGTTATTATA
Statistics
Matches: 260, Mismatches: 61, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
26 20 0.08
27 240 0.92
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:49273974 original size:27 final size:26
Alignment explanation
Indices: 49273915--49273987 Score: 83
Period size: 27 Copynumber: 2.7 Consensus size: 26
49273905 AGCTGCCAGA
* *
49273915 AACAGTAGATGTGGCAAAGCCACCAGT
1 AACAGTA-ATGTGGCATAGCCACCAAT
*
49273942 AGCAGTAATTGTGGCATAGCCACCAAT
1 AACAGTAA-TGTGGCATAGCCACCAAT
*
49273969 AACAGTCAATGTGACATAG
1 AACAGT-AATGTGGCATAG
49273988 TCACTAGTAC
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
26 1 0.03
27 36 0.92
28 2 0.05
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGTAATGTGGCATAGCCACCAAT
Found at i:49274365 original size:27 final size:27
Alignment explanation
Indices: 49274155--49274364 Score: 260
Period size: 27 Copynumber: 7.8 Consensus size: 27
49274145 TGCAATATAG
* *
49274155 GGGTATCACAGTCATTTTACCCTACAA
1 GGGTATTACGGTCATTTTACCCTACAA
* * *
49274182 GGGCATTACGGTCGTTTTACCCTACAG
1 GGGTATTACGGTCATTTTACCCTACAA
* **
49274209 GGGTATTACGTTCATTTTACCGAAC-A
1 GGGTATTACGGTCATTTTACCCTACAA
* *
49274235 GGAGTGTTACGGTCATTTTACCCTACAT
1 GG-GTATTACGGTCATTTTACCCTACAA
* *
49274263 GGGTATTACGATCATTTTACCCTACGA
1 GGGTATTACGGTCATTTTACCCTACAA
*
49274290 GGGTATTACGGTCATTTTACCCTACAG
1 GGGTATTACGGTCATTTTACCCTACAA
* *
49274317 GGGTATTATGGTCATTTTACCTTACAA
1 GGGTATTACGGTCATTTTACCCTACAA
*
49274344 GGTTATTACGGTCATTTTACC
1 GGGTATTACGGTCATTTTACC
49274365 TATTTTAGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 149 0.97
28 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGGTATTACGGTCATTTTACCCTACAA
Found at i:49280309 original size:22 final size:23
Alignment explanation
Indices: 49280284--49280333 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
49280274 GCTCGTATGG
*
49280284 GCTTAATG-TTTAGCTCGATAGA
1 GCTTAACGTTTTAGCTCGATAGA
*
49280306 GCTTACCGTTTTAGCTCGATAGA
1 GCTTAACGTTTTAGCTCGATAGA
49280329 GCTTA
1 GCTTA
49280334 CAGTTTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (23 bp):
GCTTAACGTTTTAGCTCGATAGA
Found at i:49280322 original size:23 final size:24
Alignment explanation
Indices: 49280292--49280361 Score: 90
Period size: 23 Copynumber: 2.9 Consensus size: 24
49280282 GGGCTTAATG
49280292 TTTAGCTCGATAGAGCTTACCG-T
1 TTTAGCTCGATAGAGCTTACCGTT
*
49280315 TTTAGCTCGATAGAGCTTACAGTT
1 TTTAGCTCGATAGAGCTTACCGTT
49280339 TATTAGCTCAGA-AGGAGCTTACC
1 T-TTAGCTC-GATA-GAGCTTACC
49280362 AATCATGGCT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
23 21 0.51
24 2 0.05
25 8 0.20
26 10 0.24
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (24 bp):
TTTAGCTCGATAGAGCTTACCGTT
Found at i:49295769 original size:40 final size:40
Alignment explanation
Indices: 49295714--49295893 Score: 256
Period size: 40 Copynumber: 4.5 Consensus size: 40
49295704 TATTCGGATG
** * *
49295714 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
49295754 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
49295794 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
* ** *
49295834 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAG-TGACT
*
49295874 ATATCC-GGCTAAATCCCGAA
1 ATATCCGGGCTAAGTCCCGAA
49295894 TATACTTGGG
Statistics
Matches: 129, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.09
40 115 0.89
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
Found at i:49299817 original size:47 final size:47
Alignment explanation
Indices: 49299765--49300262 Score: 852
Period size: 47 Copynumber: 10.6 Consensus size: 47
49299755 GATAATTGTG
* *
49299765 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49299812 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49299859 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49299908 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49299955 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49300002 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49300049 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49300096 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49300143 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
49300190 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49300237 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
49300263 TCCCGAAGGG
Statistics
Matches: 429, Mismatches: 20, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 382 0.89
49 47 0.11
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:49301965 original size:165 final size:165
Alignment explanation
Indices: 49301682--49301986 Score: 389
Period size: 165 Copynumber: 1.8 Consensus size: 165
49301672 GTGAAACTCA
*
49301682 AGATATGATTTTTAAGGTGACAGCGACACAGTTAGCCAGCTGTCTGGAAAAATTAAAAATGGACT
1 AGATATGATTTTTAAGGTGACAGCGACACAGTTAGCCAGCTGTCTGGAAAAATTAAAAATGAACT
* * * * * * *
49301747 GCGATAGTAAGCGAATTTAGTCTGTGAACCCCTCGTGTCCGACTCCGGCAACGGTCTCGGGTACG
66 GCGATAATAAACGAATTAAGTCCGTGAACACCTCGTGTCCGACTCCAGCAACGGTCTAGGGTACG
*
49301812 GGGTGTTACAATCAATTTTTGAGTTTTGGAACTTG
131 GGGCGTTACAATCAATTTTTGAGTTTTGGAACTTG
* * * * * *
49301847 AGATATGATTTTTGAGGTGACTGTGACGCAGTTAGCCAGCTTGTCTGG-AAATTTTAAAATGAAC
1 AGATATGATTTTTAAGGTGACAGCGACACAGTTAGCCAGC-TGTCTGGAAAAATTAAAAATGAAC
* * * ** *
49301911 TGTG-TAAATAAATGAATTAAGTCCGTTAACACCTCGTGTTTGACTCTAGCAACGGTCTAGGGTA
65 TGCGAT-AATAAACGAATTAAGTCCGTGAACACCTCGTGTCCGACTCCAGCAACGGTCTAGGGTA
49301975 CGGGGCGTTACA
129 CGGGGCGTTACA
49301987 GCACTCGTTG
Statistics
Matches: 117, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
164 1 0.01
165 109 0.93
166 7 0.06
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (165 bp):
AGATATGATTTTTAAGGTGACAGCGACACAGTTAGCCAGCTGTCTGGAAAAATTAAAAATGAACT
GCGATAATAAACGAATTAAGTCCGTGAACACCTCGTGTCCGACTCCAGCAACGGTCTAGGGTACG
GGGCGTTACAATCAATTTTTGAGTTTTGGAACTTG
Found at i:49303264 original size:66 final size:66
Alignment explanation
Indices: 49303194--49303333 Score: 212
Period size: 66 Copynumber: 2.1 Consensus size: 66
49303184 TGGAAAACAT
* * *
49303194 TCAATAATGATTAGGGTTTTCTTCAAAATGGAGAAAT-GAAATCATTTGGAAATGAATATGGTTT
1 TCAATAATGATTAGGGCTTTCTCCAAAATGGAGAAATAG-AATCATTTGGAAATAAATATGGTTT
49303258 TC
65 TC
* *
49303260 TCAATAATGATTATGGCTTTCTCCAAAATGGAGAAATAGAATCATTTGGAAATAAATGTGGTTTT
1 TCAATAATGATTAGGGCTTTCTCCAAAATGGAGAAATAGAATCATTTGGAAATAAATATGGTTTT
49303325 C
66 C
49303326 TCAA-AATG
1 TCAATAATG
49303334 GAAATTAAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
65 4 0.06
66 63 0.93
67 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (66 bp):
TCAATAATGATTAGGGCTTTCTCCAAAATGGAGAAATAGAATCATTTGGAAATAAATATGGTTTT
C
Found at i:49303289 original size:21 final size:20
Alignment explanation
Indices: 49303243--49303289 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
49303233 AATCATTTGG
*
49303243 AAATGAATATGGTTTTCTCA
1 AAATGAATATGGCTTTCTCA
*
49303263 ATAATGATTATGGCTTTCTCCA
1 A-AATGAATATGGCTTTCT-CA
49303285 AAATG
1 AAATG
49303290 GAGAAATAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 19 0.83
22 3 0.13
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (20 bp):
AAATGAATATGGCTTTCTCA
Found at i:49306183 original size:31 final size:31
Alignment explanation
Indices: 49306145--49306207 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
49306135 TCATGTCCAA
49306145 ATCACCAACTTATATAAATAAGGTATAACAT
1 ATCACCAACTTATATAAATAAGGTATAACAT
49306176 ATCACCAACTTATATAAATAAGGTATAACAT
1 ATCACCAACTTATATAAATAAGGTATAACAT
49306207 A
1 A
49306208 CTCAACAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.49, C:0.16, G:0.06, T:0.29
Consensus pattern (31 bp):
ATCACCAACTTATATAAATAAGGTATAACAT
Found at i:49311927 original size:30 final size:30
Alignment explanation
Indices: 49311870--49311927 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
49311860 TGCCTTTGAA
** * *
49311870 AATAGTTACAAAAAGAGGCATCTAATTTCT
1 AATAGTTACAAAAAGAGAAACCAAATTTCT
*
49311900 AATATTTACAAAAAGAGAAACCAAATTT
1 AATAGTTACAAAAAGAGAAACCAAATTT
49311928 TGAAAATAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (30 bp):
AATAGTTACAAAAAGAGAAACCAAATTTCT
Found at i:49315987 original size:27 final size:26
Alignment explanation
Indices: 49315950--49316061 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
49315940 AGCATGGCTG
* *
49315950 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
49315976 CCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
49316004 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
49316031 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
49316058 CCAG
1 CCAG
49316062 GATGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:49316014 original size:54 final size:54
Alignment explanation
Indices: 49315950--49316061 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
49315940 AGCATGGCTG
* *
49315950 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
49316004 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
49316058 CCAG
1 CCAG
49316062 GATGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:49317524 original size:24 final size:24
Alignment explanation
Indices: 49317488--49317565 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
49317478 GCCAACACTG
* *
49317488 TTCTCCCTAATCAGCTTCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
49317512 TTCTCCCTTATCAGCTCCTAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
* * *
49317536 CTCTCCCTTATTAGCTCCCAAATC
1 TTCTCCCTTATCAGCTCCTAAATC
49317560 TTCTCC
1 TTCTCC
49317566 TGACAGCCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.21, C:0.38, G:0.04, T:0.37
Consensus pattern (24 bp):
TTCTCCCTTATCAGCTCCTAAATC
Done.