Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 154 of 325
Found at i:49321043 original size:31 final size:31
Alignment explanation
Indices: 49321008--49321068 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
49320998 ATACTTTAAC
49321008 AAGTGCAATACTCTTATTCCTCAATTGTTTA
1 AAGTGCAATACTCTTATTCCTCAATTGTTTA
49321039 AAGTGCAATACTCTTATTCCTCAATTGTTT
1 AAGTGCAATACTCTTATTCCTCAATTGTTT
49321069 TACTTCTCGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.43
Consensus pattern (31 bp):
AAGTGCAATACTCTTATTCCTCAATTGTTTA
Found at i:49326390 original size:49 final size:49
Alignment explanation
Indices: 49326289--49326417 Score: 170
Period size: 49 Copynumber: 2.6 Consensus size: 49
49326279 GTTAAGATGC
* * *
49326289 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTTTCATGTAGCGAGGT
1 CGATGCCATGTCCAAGACA-GGTCTTACACTGGCTCTCATCTACCGAGGT
* **
49326339 CGATGCTATGTCTTAGACAGGTCTTACACTGGCTCTCATCTACCG-GTGT
1 CGATGCCATGTCCAAGACAGGTCTTACACTGGCTCTCATCTACCGAG-GT
*
49326388 CGATGCCATGTCCCAGACAGGTCTTACACT
1 CGATGCCATGTCCAAGACAGGTCTTACACT
49326418 AACACACCTC
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
48 1 0.01
49 52 0.75
50 16 0.23
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCAAGACAGGTCTTACACTGGCTCTCATCTACCGAGGT
Found at i:49326504 original size:48 final size:47
Alignment explanation
Indices: 49326438--49326652 Score: 154
Period size: 46 Copynumber: 4.6 Consensus size: 47
49326428 AAGCTGACGC
* * * * *
49326438 CATGTCCTAGATAAGTCTTACACTAGCTTGTATGTCGTGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGCTTATATGTC-TGAGGCCGATG
* * * * *
49326486 CATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATATGTCT-GAGGCCGATG
* * * * *
49326532 CATGTCCCAAACATGTCTTACACTGGCTTAAATATCTGAAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATATGTCTG-AGGCCGATG
* * *
49326580 CATGTCCCAGAAATGTCTTACAC-AGGCTCT-CATG-CTG-TGCCTGATG
1 CATGTCCCAGACATGTCTTACACTA-GCT-TATATGTCTGAGGCC-GATG
* *
49326626 CATGTCCCAGACAAGTCTCACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
49326653 ACACATATCA
Statistics
Matches: 130, Mismatches: 29, Indels: 18
0.73 0.16 0.10
Matches are distributed among these distances:
45 4 0.03
46 59 0.45
47 7 0.05
48 59 0.45
49 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTATATGTCTGAGGCCGATG
Found at i:49326626 original size:94 final size:93
Alignment explanation
Indices: 49326477--49326649 Score: 215
Period size: 94 Copynumber: 1.8 Consensus size: 93
49326467 GTATGTCGTG
* * * *
49326477 AGGCCGATACATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTCGATGCATGTCCCAA
1 AGGCCAATACATGTCCCAGAAATGTCTTACACTAGCTCTCATCT-AATGCCGATGCATGTCCCAA
* *
49326542 ACATGTCTTACACTGGCTTAAATATCTGA
65 ACAAGTCTCACACTGGCTTAAATATCTGA
* *
49326571 AGGCCAATGCATGTCCCAGAAATGTCTTACAC-AGGCTCTCATGCT-GTGCCTGATGCATGTCCC
1 AGGCCAATACATGTCCCAGAAATGTCTTACACTA-GCTCTCAT-CTAATGCC-GATGCATGTCCC
*
49326634 AGACAAGTCTCACACT
63 AAACAAGTCTCACACT
49326650 AGCACACATA
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
93 4 0.06
94 61 0.91
95 2 0.03
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (93 bp):
AGGCCAATACATGTCCCAGAAATGTCTTACACTAGCTCTCATCTAATGCCGATGCATGTCCCAAA
CAAGTCTCACACTGGCTTAAATATCTGA
Found at i:49336608 original size:56 final size:56
Alignment explanation
Indices: 49336548--49336678 Score: 185
Period size: 56 Copynumber: 2.3 Consensus size: 56
49336538 ATTTAATAGG
*
49336548 TTGGCATCGATATGTGATTCTGATATATGTGTACGAGTAAGACCGC-GT-TTAGTTCA
1 TTGGCATCGATATGTGATTCTGATATATGTGTACGAGTAAGACC-CTGTCTTAG-ACA
* *
49336604 TTGGCATCGATATGTGATTCTGCTATATGTGTGCGAGTAAGACCCTGTCTTAGACA
1 TTGGCATCGATATGTGATTCTGATATATGTGTACGAGTAAGACCCTGTCTTAGACA
* *
49336660 GTGGCATTGATATGTGATT
1 TTGGCATCGATATGTGATT
49336679 ACATGTAAGA
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
55 1 0.01
56 63 0.93
57 4 0.06
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.36
Consensus pattern (56 bp):
TTGGCATCGATATGTGATTCTGATATATGTGTACGAGTAAGACCCTGTCTTAGACA
Found at i:49338738 original size:51 final size:51
Alignment explanation
Indices: 49338661--49338784 Score: 151
Period size: 51 Copynumber: 2.4 Consensus size: 51
49338651 CGGATGCCCG
* **
49338661 GTGGCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTT-CACAAA
1 GTGGCCTGCACATAGTACCACACTTGTAACCAAAGCTACCTT-TTACACAAA
* * *
49338712 GTGGCCTTCACATAGTACCACACTTGTAACCAAAGCTATCTTTTACACATA
1 GTGGCCTGCACATAGTACCACACTTGTAACCAAAGCTACCTTTTACACAAA
** *
49338763 GCAGCCTGCACTTAGTACCACA
1 GTGGCCTGCACATAGTACCACA
49338785 AATGTGATCG
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 2 0.03
51 60 0.97
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.26
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTAACCAAAGCTACCTTTTACACAAA
Found at i:49340442 original size:19 final size:20
Alignment explanation
Indices: 49340418--49340455 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
49340408 GGTACCACCA
49340418 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
49340437 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
49340456 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:49340790 original size:47 final size:46
Alignment explanation
Indices: 49340728--49340855 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 46
49340718 CGCATCCATA
49340728 AATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AATGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATC-C
* *
49340776 -ATGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCATCC
1 AATGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCC
49340818 ATAGGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 A-A--TGAACTCGGACTCAACTCAACGAGTTCGGATGC
49340856 TCAACCATCC
Statistics
Matches: 71, Mismatches: 2, Indels: 13
0.83 0.02 0.15
Matches are distributed among these distances:
42 1 0.01
43 7 0.10
44 2 0.03
46 30 0.42
47 31 0.44
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
AATGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCC
Found at i:49340794 original size:93 final size:93
Alignment explanation
Indices: 49340684--49340855 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
49340674 CACCCCTAAG
*
49340684 TGAACTCGAACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAATGAACTCGGACTCAACTC
1 TGAACTCGAACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAATGAACTCGGACTCAACTC
49340748 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
* * * **
49340777 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAGGTGAACTCGGACTCAACTCA
1 TGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
49340842 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
49340856 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
TGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:49340850 original size:46 final size:45
Alignment explanation
Indices: 49340682--49340852 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
49340672 CCCACCCCTA
* * * *
49340682 AGTGAACTCGAACTCAACTCAACGAGCTCAGG-CGTTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCAT
* * *
49340727 AAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCAT
49340775 CA-TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
49340820 AGGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACTCAACGAGTTCGGA
49340853 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 3 0.03
46 56 0.53
47 30 0.28
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT
Found at i:49347561 original size:19 final size:20
Alignment explanation
Indices: 49347537--49347574 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
49347527 GGTATCACCA
49347537 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
49347556 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
49347575 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:49347960 original size:92 final size:92
Alignment explanation
Indices: 49347803--49347971 Score: 286
Period size: 92 Copynumber: 1.8 Consensus size: 92
49347793 GCCCCTAAGT
* *
49347803 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTGGACTCAACTCAAC
49347868 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* *
49347895 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACT-GGACTCAACTCAA
49347959 CGAGTTCGGATGC
65 CGAGTTCGGATGC
49347972 TCAACCATCC
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
91 16 0.22
92 56 0.78
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:49347968 original size:45 final size:45
Alignment explanation
Indices: 49347798--49347968 Score: 197
Period size: 45 Copynumber: 3.8 Consensus size: 45
49347788 AACCCGCCCC
* * *
49347798 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCA
* *
49347844 TAAATGAACT-GGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTGCATCCA
* *
49347891 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
49347935 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
49347969 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 5 0.05
43 2 0.02
44 3 0.03
45 50 0.47
46 14 0.13
47 25 0.24
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
Found at i:49373515 original size:27 final size:27
Alignment explanation
Indices: 49373460--49373516 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
49373450 TACTATTTTT
* * *
49373460 CCCTTATGTGGTAAGATGATTATTTTG
1 CCCTTATATGGTAAGATAATTATTATG
49373487 CCCTTATATGGTAAGATAACTTA-TATG
1 CCCTTATATGGTAAGATAA-TTATTATG
49373514 CCC
1 CCC
49373517 CTATGTGATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 23 0.88
28 3 0.12
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.39
Consensus pattern (27 bp):
CCCTTATATGGTAAGATAATTATTATG
Found at i:49373884 original size:18 final size:18
Alignment explanation
Indices: 49373861--49373900 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
49373851 TTTAAACTGT
49373861 TACTGCACTGATTACTAC
1 TACTGCACTGATTACTAC
* *
49373879 TACTGCACTGTTTACTGC
1 TACTGCACTGATTACTAC
49373897 TACT
1 TACT
49373901 ATAATGGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.38
Consensus pattern (18 bp):
TACTGCACTGATTACTAC
Found at i:49378231 original size:56 final size:56
Alignment explanation
Indices: 49378070--49378205 Score: 227
Period size: 56 Copynumber: 2.4 Consensus size: 56
49378060 CCCATGGCAT
*
49378070 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* *
49378126 CGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTAGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* *
49378182 CGTTATATGTGTGTGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
49378206 CTATTTGGAA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
Found at i:49392434 original size:27 final size:28
Alignment explanation
Indices: 49392404--49392490 Score: 133
Period size: 27 Copynumber: 3.2 Consensus size: 28
49392394 GTGACAAAGT
*
49392404 CACCAGATATAGATA-TTGTGGTAGAGC
1 CACCAGATACAGATATTTGTGGTAGAGC
* *
49392431 CACCAGAAACAGATATTTGTGGCAGAGC
1 CACCAGATACAGATATTTGTGGTAGAGC
49392459 CACCAGAT-CAGATATTTGTGGTAGAGC
1 CACCAGATACAGATATTTGTGGTAGAGC
49392486 CACCA
1 CACCA
49392491 AAATGCTTCC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 36 0.67
28 18 0.33
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (28 bp):
CACCAGATACAGATATTTGTGGTAGAGC
Found at i:49392459 original size:28 final size:26
Alignment explanation
Indices: 49392380--49392490 Score: 123
Period size: 27 Copynumber: 4.1 Consensus size: 26
49392370 AGCATGGCTG
* * *
49392380 CCAGAACAGATATTGTGACAAAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
49392406 CCAGATATAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
49392433 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
* *
49392461 CCAGATCAGATATTTGTGGTAGAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
49392488 CCA
1 CCA
49392491 AAATGCTTCC
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 5 0.07
27 50 0.68
28 18 0.25
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:49392463 original size:55 final size:53
Alignment explanation
Indices: 49392380--49392490 Score: 152
Period size: 55 Copynumber: 2.1 Consensus size: 53
49392370 AGCATGGCTG
* *
49392380 CCAGAACAGATATTGTGACAAAGTCACCAGATATAGATA-TTGTGGTAGAGCCA
1 CCAGAACAGATATTGTGACAAAGCCACCAGAT-CAGATATTTGTGGTAGAGCCA
* *
49392433 CCAGAAACAGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGTAGAGCCA
1 CCAG-AACAGATA-TTGTGACAAAGCCACCAGATCAGATATTTGTGGTAGAGCCA
49392488 CCA
1 CCA
49392491 AAATGCTTCC
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
53 4 0.08
54 13 0.25
55 34 0.67
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAAAGCCACCAGATCAGATATTTGTGGTAGAGCCA
Found at i:49395142 original size:50 final size:47
Alignment explanation
Indices: 49395076--49395295 Score: 175
Period size: 46 Copynumber: 4.7 Consensus size: 47
49395066 GGTCGACGCT
*
49395076 ATGTCCCAGACATGGTCTTACACTAGCTTTCACATATTCGT-GCAAATGCC
1 ATGTCCCAGACATGGTCTTACACTAGC--TCACATATT-GTAGCCAATG-C
* * * * **
49395126 ATGTCCCAGACATGGTCTTACA-TTG-ACACCTCTATACATGCCAATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCTCACATAT-TGTA-GCCAATG-C
* * * **
49395174 ATGTCCCGGACATGGTCTTACACT-G-ACACATCTTGTAGCTGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTCACATATTGTAGCCAATGC
* * * *
49395219 ATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGCCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTCACATATTGTAGCCAATGC
*
49395265 ATGTCCCAGACAT-GTCTTACACTAGCACACA
1 ATGTCCCAGACATGGTCTTACACTAGCTCACA
49395296 AATAACCCGA
Statistics
Matches: 142, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 10 0.07
45 14 0.10
46 53 0.37
47 3 0.02
48 37 0.26
49 3 0.02
50 22 0.15
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGGTCTTACACTAGCTCACATATTGTAGCCAATGC
Found at i:49395270 original size:46 final size:48
Alignment explanation
Indices: 49394928--49395290 Score: 201
Period size: 47 Copynumber: 7.7 Consensus size: 48
49394918 TATAATGCCA
* * *
49394928 ATGCCATGTCCCAGACATGGTCATACACTGGCTCATCCATCAA-GT---CA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC-T-CAT-AATGTGGCCG
** *
49394975 ATATCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA-GT---CG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC-T-CAT-AATGTGGCCG
* * * *
49395022 ATGCCATGTCCAAGACATGGTCTTACACT-GACTATCGA-AACTGAGGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC-ATAA-TGTGGCCG
* * * * **
49395071 ACGCTATGTCCCAGACATGGTCTTACACTAGCTTTCACATAT-TCGTGCAA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-ATGT-G-GCCG
* * *
49395121 ATGCCATGTCCCAGACATGGTCTTACA-TTGACACCTCTATACA--T-GCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-C-TCTC-ATA-ATGTGGCCG
* * * ** * *
49395169 ATGCCATGTCCCGGACATGGTCTTACACT-G-ACACATCTTGTAGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCG
49395215 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCG
49395261 ATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
49395291 ACACAAATAA
Statistics
Matches: 256, Mismatches: 39, Indels: 43
0.76 0.12 0.13
Matches are distributed among these distances:
44 14 0.05
45 18 0.07
46 49 0.19
47 71 0.28
48 31 0.12
49 38 0.15
50 29 0.11
51 3 0.01
52 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGGCCG
Found at i:49399641 original size:56 final size:56
Alignment explanation
Indices: 49399575--49399915 Score: 432
Period size: 56 Copynumber: 6.2 Consensus size: 56
49399565 TCCCAGACAA
* * * *
49399575 GGTCTTACTCGTAAACACATATCGGAATCAGC-TATTGATGCCAACGTATTAAACGT
1 GGTCTTACTCGTACACACATATCAGAATCA-CATATCGATGCCAATGTATTAAACGT
**
49399631 GGTCTTACTCGTACACACATATTGGAATCAC--AT--AT--C--TGTATTAAACGT
1 GGTCTTACTCGTACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
* *
49399679 GGTCTTACTCGCATACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGTACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
* * *
49399735 GGTCTTACTCGTACACACAAATC-GAAATCACATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGTACACACATATCAG-AATCACATATCGATGCCAATGTATTAAACGT
* * *
49399791 GGTCTTACTTGCACACACATATCAAAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGTACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
* * * *
49399847 GGTCTTACTTGCACACACATATCAGAATCATATATCGATGCCAATGTATTAAACAT
1 GGTCTTACTCGTACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
49399903 GGTCTTACTCGTA
1 GGTCTTACTCGTA
49399916 ATCACATGTC
Statistics
Matches: 252, Mismatches: 23, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
48 38 0.15
50 3 0.01
52 4 0.02
54 3 0.01
55 2 0.01
56 202 0.80
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGTACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
Found at i:49399933 original size:43 final size:43
Alignment explanation
Indices: 49399872--49400054 Score: 226
Period size: 43 Copynumber: 4.3 Consensus size: 43
49399862 CACATATCAG
* *** *
49399872 AATCATATATCGATGCCAATGTATTAAACATGGTCTTACTCGT
1 AATCACATATCGATGCCAATGTCCCAAACGTGGTCTTACTCGT
* *
49399915 AATCACATGTCGATGCCAACGTCCCAAACGTGGTCTTACAT-GT
1 AATCACATATCGATGCCAATGTCCCAAACGTGGTCTTAC-TCGT
* * * *
49399958 AATCACATATCAATGCCAATATCCCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAATGTCCCAAACGTGGTCTTACTCGT
*
49400001 AATCACATATCGATGCCAATGTCCCAGAA-GTGGTCTTACACGT
1 AATCACATATCGATGCCAATGTCCCA-AACGTGGTCTTACTCGT
49400044 AATCACATATC
1 AATCACATATC
49400055 AGAAATCCTA
Statistics
Matches: 121, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
43 119 0.98
44 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
AATCACATATCGATGCCAATGTCCCAAACGTGGTCTTACTCGT
Found at i:49412591 original size:15 final size:15
Alignment explanation
Indices: 49412567--49412611 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
49412557 AATGATATCA
49412567 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* * *
49412582 TATTTTGGATTCCTC
1 TATCTTGGATTTCTT
*
49412597 TATCTTGGTTTTCTT
1 TATCTTGGATTTCTT
49412612 ATCATCTTTA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.11, C:0.16, G:0.13, T:0.60
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:49415030 original size:43 final size:42
Alignment explanation
Indices: 49414970--49415086 Score: 135
Period size: 43 Copynumber: 2.8 Consensus size: 42
49414960 CTTTGATATG
49414970 AGATTTCGTGTAAGACCATGTCTAGGACATGGCATCGAAATA
1 AGATTTCGTGTAAGACCATGTCTAGGACATGGCATCGAAATA
* * * * **
49415012 AGATTTTCGTATAAGACCATATCTGGGATATGGCATCGATGTA
1 AGA-TTTCGTGTAAGACCATGTCTAGGACATGGCATCGAAATA
* * * *
49415055 AGATCTCATGTAAGACCACGTTTAGGACATGG
1 AGATTTCGTGTAAGACCATGTCTAGGACATGG
49415087 TATTGGCATC
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 24 0.40
43 36 0.60
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (42 bp):
AGATTTCGTGTAAGACCATGTCTAGGACATGGCATCGAAATA
Found at i:49416873 original size:18 final size:18
Alignment explanation
Indices: 49416850--49416888 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
49416840 GTCGCAAGAG
49416850 AGTAAACCT-CCCACAATT
1 AGTAAA-CTGCCCACAATT
49416868 AGTAAACTGCCCACAATT
1 AGTAAACTGCCCACAATT
49416886 AGT
1 AGT
49416889 CAAAAAGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.23
Consensus pattern (18 bp):
AGTAAACTGCCCACAATT
Found at i:49420682 original size:72 final size:72
Alignment explanation
Indices: 49420592--49420734 Score: 250
Period size: 72 Copynumber: 2.0 Consensus size: 72
49420582 CAGGGCACAC
** * *
49420592 ACCCGTGTCCCCCAATTTCAGCCTGTGTGATTTGCGAATTTCAAATTTGGGCGCATCTGACATTT
1 ACCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTGGGCACATCTGACATTT
49420657 AGTACAT
66 AGTACAT
49420664 ACCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTGGGCACATCTGACATTT
1 ACCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTGGGCACATCTGACATTT
49420729 AGTACA
66 AGTACA
49420735 CGCCTGTGTT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (72 bp):
ACCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTGGGCACATCTGACATTT
AGTACAT
Found at i:49432372 original size:31 final size:31
Alignment explanation
Indices: 49432314--49432382 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
49432304 AGCAACACGA
**
49432314 GCGTGTGTGACCACACGGCTAGCCCACATGG
1 GCGTGTGTGACCACACGGCTAGCCCACACAG
* *
49432345 GCGTGTGTGACCACACGTCTTA-TCCACACAG
1 GCGTGTGTGACCACACGGC-TAGCCCACACAG
49432376 GCGTGTG
1 GCGTGTG
49432383 ACCCTCTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 31 0.94
32 2 0.06
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.20
Consensus pattern (31 bp):
GCGTGTGTGACCACACGGCTAGCCCACACAG
Found at i:49434106 original size:68 final size:67
Alignment explanation
Indices: 49434034--49434183 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
49434024 CATCATGTGT
* * * *
49434034 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
49434096 ATGTAG
62 ATGTAG
** * *
49434102 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
49434167 AG
66 AG
49434169 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
49434184 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:49434139 original size:64 final size:64
Alignment explanation
Indices: 49434058--49434241 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
49434048 AGACATTATG
* *
49434058 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
49434122 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
49434187 AA
63 AA
* * * *
49434189 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
49434242 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:49439720 original size:43 final size:42
Alignment explanation
Indices: 49439649--49439758 Score: 150
Period size: 43 Copynumber: 2.6 Consensus size: 42
49439639 GAGATTAGTA
* * *
49439649 TAAGACCATATCTGGGATATGGCATCGATATGAGA-CTTCGTG
1 TAAGACCATATCTAGGATATGGCATCGATATGAGATC-CCATG
* *
49439691 TAAGACCATAGCTAGGCTATTGGCATCGATATGAGATCCCATG
1 TAAGACCATATCTAGGATA-TGGCATCGATATGAGATCCCATG
49439734 TAAGACCATATCTAGGATATGGCAT
1 TAAGACCATATCTAGGATATGGCAT
49439759 TGGTATGGTG
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 22 0.37
43 36 0.61
44 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (42 bp):
TAAGACCATATCTAGGATATGGCATCGATATGAGATCCCATG
Found at i:49442458 original size:46 final size:47
Alignment explanation
Indices: 49442350--49442476 Score: 159
Period size: 46 Copynumber: 2.7 Consensus size: 47
49442340 AAGCTGACGC
* * * *
49442350 CATGTCCTAGACAGGTCTTACACTAGCTTGTATATCCCAAGGCTAATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCTACATCCCAAGGCTAATG
* * *
49442398 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCCCAAGGCTAATG
*
49442444 CATGTCCCAGACATGTCTTACACTGGCTC-ACAT
1 CATGTCCCAGACATGTCTTACACTAGCTCTACAT
49442477 ACCACCCAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 43 0.61
47 2 0.03
48 25 0.36
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATCCCAAGGCTAATG
Found at i:49446319 original size:48 final size:48
Alignment explanation
Indices: 49446248--49446579 Score: 330
Period size: 48 Copynumber: 6.9 Consensus size: 48
49446238 AGGGTAAATT
** * *
49446248 GCCGATGCCATGTCTTAGACATGGTCTTACACTGGCT-TACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATCGAG
* * *
49446296 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * * *
49446344 GTCGATGCCATGTCCTAGACATGGTCTTAC-TTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCGAG
* * * * *
49446391 GCCGACGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCGAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * * * *
49446439 ACCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAAC-ATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGA-G
* * * *
49446487 GCCGATGCCATGTTCCAAACATGGTCTTACATTAGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * *
49446535 GCCGACGCCATGTCTCAGACATGGTCTTACACTAGCACACATATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
49446580 ACCCAATGTC
Statistics
Matches: 233, Mismatches: 45, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
47 38 0.16
48 194 0.83
49 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
Found at i:49446530 original size:96 final size:96
Alignment explanation
Indices: 49446248--49446565 Score: 372
Period size: 96 Copynumber: 3.3 Consensus size: 96
49446238 AGGGTAAATT
** * **
49446248 GCCGATGCCATGTCTTAGACATGGTCTTACACTGGCT-TACATGTCGA-GGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCT-CATAAC-ATGGCCGATGCCATGTCC
* * * *
49446311 CAGACATGGTCTTACACTAGCTCTCATCTCAAT
64 CAAACATGGTCTTACACTAGCTCTCATATCGAC
* * ** *
49446344 GTCGATGCCATGTCCTAGACATGGTCTTAC-TTGGCTCTCATAATGTGGCCGACGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAACATGGCCGATGCCATGTCCCA
* *
49446408 AACATGGTCTTACACTAGCACACATATCGAC
66 AACATGGTCTTACACTAGCTCTCATATCGAC
* * * *
49446439 ACCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAACATTGCCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAACATGGCCGATGCCATGTCCCA
* **
49446504 AACATGGTCTTACATTAGCTCTCATATCGTG
66 AACATGGTCTTACACTAGCTCTCATATCGAC
* *
49446535 GCCGACGCCATGTCTCAGACATGGTCTTACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACA
49446566 CTAGCACACA
Statistics
Matches: 187, Mismatches: 32, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
95 76 0.41
96 111 0.59
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAACATGGCCGATGCCATGTCCCA
AACATGGTCTTACACTAGCTCTCATATCGAC
Found at i:49447909 original size:56 final size:58
Alignment explanation
Indices: 49447774--49447922 Score: 182
Period size: 56 Copynumber: 2.6 Consensus size: 58
49447764 TATTGACCTT
* * * *
49447774 GTTATAGAAAGGATTTAGCCCGGACAGGTAATCCTAATATAATACCTCTCGAGTATAC
1 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTCGAGCATAC
* *
49447832 GTTATGAT-TAGGGTTTAGCCTGGACTGGTAATCCTAAT-TGAACT-CCT-T-GAGCATAC
1 GTTAT-ATAAAGGATTTAGCCTGGACTGGTAATCCTAATAT-AA-TACCTCTCGAGCATAC
49447888 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCT
1 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCT
49447923 GTTATACAAT
Statistics
Matches: 79, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
55 2 0.03
56 37 0.47
57 2 0.03
58 36 0.46
59 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (58 bp):
GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTCGAGCATAC
Found at i:49450371 original size:37 final size:37
Alignment explanation
Indices: 49450330--49450402 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
49450320 GGCACTTTGG
*
49450330 TGCATTTCATTTCAGAGCATAGGTTGGAGCACTTCAA
1 TGCATTGCATTTCAGAGCATAGGTTGGAGCACTTCAA
** *
49450367 TGCATTGCATTTTGGAGCTTAGGTTGGAGCACTTCA
1 TGCATTGCATTTCAGAGCATAGGTTGGAGCACTTCA
49450403 GTGTGTATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (37 bp):
TGCATTGCATTTCAGAGCATAGGTTGGAGCACTTCAA
Found at i:49451845 original size:39 final size:39
Alignment explanation
Indices: 49451800--49451881 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
49451790 ATCATAAGCT
* *
49451800 TTATGTACATACATGTACCCTCTTGTAATAATTTCATAC
1 TTATGTACATACATATACCATCTTGTAATAATTTCATAC
*
49451839 TTATGTACATACCTATACCATCTTGTAATAATTTCATAC
1 TTATGTACATACATATACCATCTTGTAATAATTTCATAC
49451878 TTAT
1 TTAT
49451882 TCTCATAGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.32, C:0.20, G:0.06, T:0.43
Consensus pattern (39 bp):
TTATGTACATACATATACCATCTTGTAATAATTTCATAC
Found at i:49455287 original size:72 final size:72
Alignment explanation
Indices: 49455170--49455316 Score: 285
Period size: 72 Copynumber: 2.0 Consensus size: 72
49455160 TTACACACAC
*
49455170 ATACCTGCACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTGAACACAT
1 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTGAACACAT
49455235 CGGAATA
66 CGGAATA
49455242 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTGAACACAT
1 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTGAACACAT
49455307 CGGAATA
66 CGGAATA
49455314 ATA
1 ATA
49455317 ACGGATATCG
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (72 bp):
ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTGAACACAT
CGGAATA
Found at i:49455460 original size:51 final size:51
Alignment explanation
Indices: 49455328--49455607 Score: 183
Period size: 51 Copynumber: 5.5 Consensus size: 51
49455318 CGGATATCGG
* * * * * *
49455328 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCT-TCTTCACAAA
1 GTGGCCTGCACATAGTACCACACATGTGA-TCAAAGCCATCTAT-TACACATA
* * * *
49455379 GTGGCCTTCACATAGTACCACACTTTTGATCAAAGCCATCTCTTACACATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
* * * * * *
49455430 GTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGAGTACGCATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
* * * * * * * * *
49455481 GTAGCCTGCACTTAGTACTATACATGCGACCTAA-CCACCTAGTACACATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
* * * * * * *
49455531 GTAGCCTGCACTTCGTACTACACACGTGACCTAAAACCAT-T-TTAAGCACATA
1 GTGGCCTGCACATAGTACCACACATGTGATC-AAAGCCATCTATT-A-CACATA
*
49455583 GTGGCCTGCACATAGTACTACACAT
1 GTGGCCTGCACATAGTACCACACAT
49455608 TTTTTCTCAT
Statistics
Matches: 185, Mismatches: 38, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
50 40 0.22
51 113 0.61
52 32 0.17
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
Found at i:49455541 original size:50 final size:51
Alignment explanation
Indices: 49455422--49455564 Score: 171
Period size: 50 Copynumber: 2.8 Consensus size: 51
49455412 AGCCATCTCT
* * * * * *
49455422 TACACATAGTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGAG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCCACCGAG
* * * *
49455473 TACGCATAGTAGCCTGCACTTAGTACTATACATGCGACCTAA-CCACCTAG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCCACCGAG
* *
49455523 TACACATAGTAGCCTGCACTTCGTACTACACACGTGACCTAA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
49455565 AACCATTTTA
Statistics
Matches: 77, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 42 0.55
51 35 0.45
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (51 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCCACCGAG
Found at i:49462940 original size:47 final size:47
Alignment explanation
Indices: 49462886--49463194 Score: 519
Period size: 47 Copynumber: 6.6 Consensus size: 47
49462876 TATTTGAATA
49462886 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
49462933 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
49462980 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
49463027 AATGTGAAAGTGTATATAAGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
49463074 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
49463121 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
49463168 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
49463195 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 250 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:49464791 original size:40 final size:40
Alignment explanation
Indices: 49464661--49464779 Score: 177
Period size: 40 Copynumber: 3.0 Consensus size: 40
49464651 ATTGATTATT
* *
49464661 TATGGCACTTAGTGTGCGATACAACATAGCTTCGGCTATA
1 TATGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATA
*
49464701 TATGGCACTTAGTGTGCTATTCGACATAGCTTCGGCTATA
1 TATGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATA
* *
49464741 TATGGCACTTAGTGTGCGACTT-GAGATAGCTTCAGCTAT
1 TATGGCACTTAGTGTGCGA-TTCGACATAGCTTCGGCTAT
49464780 GCATAGCACT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
40 70 0.97
41 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (40 bp):
TATGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATA
Found at i:49467824 original size:48 final size:48
Alignment explanation
Indices: 49467766--49468301 Score: 831
Period size: 48 Copynumber: 11.0 Consensus size: 48
49467756 TTGATGCATA
49467766 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
49467814 AGATATGTATATGTGGTAAAGCCGACTGGCTGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGA----ATGGCTAATGTGAAATATGTATG
* *
49467866 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGCATA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
49467914 AGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
49467962 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
49468010 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
49468058 AGATATGTATATATGGTAAAGCCGAATGGCTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
* * * *
49468108 AGATATGTATATGTGGTAAAGCTGAATGGTTAATGCGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATG
49468158 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
49468206 AGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATG
*
49468256 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
49468302 GGCGATGTGT
Statistics
Matches: 453, Mismatches: 25, Indels: 20
0.91 0.05 0.04
Matches are distributed among these distances:
47 1 0.00
48 266 0.59
49 8 0.02
50 130 0.29
51 1 0.00
52 47 0.10
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:49468160 original size:196 final size:192
Alignment explanation
Indices: 49467766--49468298 Score: 834
Period size: 196 Copynumber: 2.7 Consensus size: 192
49467756 TTGATGCATA
49467766 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
49467831 AAAGCCGACTGGCTGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
66 AAAGCCGA----ATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
* * *
49467896 TAATGTGAAATATGCATAAGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
127 TAATGTGAAATATACATAAGATATGTATATGCGGTAAAGCCGAATGGCTAATGCGAAATATATAT
49467961 G
192 G
*
49467962 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
49468027 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATATGGTAAAGCCGAATGGCTAAT
66 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* * * * *
49468092 GCGAAATATATATATGAGATATGTATATGTGGTAAAGCTGAATGGTTAATGCGAAATATATATAT
131 GTGAAATATACATA--AGATATGTATATGCGGTAAAGCCGAATGGCTAATGCG-AA-ATATATAT
49468157 G
192 G
*
49468158 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
49468223 AAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT
66 AAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCT
*
49468287 AGTGTGAAATAT
128 AATGTGAAATAT
49468299 GTAGGCGATG
Statistics
Matches: 313, Mismatches: 17, Indels: 12
0.92 0.05 0.04
Matches are distributed among these distances:
192 66 0.21
194 33 0.11
195 3 0.01
196 161 0.51
197 2 0.01
198 48 0.15
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (192 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
GTGAAATATACATAAGATATGTATATGCGGTAAAGCCGAATGGCTAATGCGAAATATATATG
Found at i:49468317 original size:148 final size:144
Alignment explanation
Indices: 49467766--49468301 Score: 831
Period size: 148 Copynumber: 3.7 Consensus size: 144
49467756 TTGATGCATA
*
49467766 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
*
49467831 AAAGCCGACTGGCTGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
66 AAAGCCGA----ATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
* *
49467896 TAATGTGAAATATGCATA
127 TAATGTGAAATATGTATG
* * *
49467914 AGATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATATATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
49467979 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
66 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
49468044 GTGAAATATGTATG
131 GTGAAATATGTATG
* *
49468058 AGATATGTATATATGGTAAAGCCGAATGGCTAATGCGAAATATATATATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATATGTATATGTG
* * * *
49468123 GTAAAGCTGAATGGTTAATGCGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGC
64 GTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGC
49468188 TAATGTGAAATATGTATG
127 TAATGTGAAATATGTATG
*
49468206 AGATATGCATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGT
*
49468270 GGTAAAGCCGAATGGCTAGTGTGAAATATGTA
63 GGTAAAGCCGAATGGCTAATGTGAAATATGTA
49468302 GGCGATGTGT
Statistics
Matches: 361, Mismatches: 22, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
144 102 0.28
145 2 0.01
146 47 0.13
147 5 0.01
148 205 0.57
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (144 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
GTGAAATATGTATG
Found at i:49468593 original size:37 final size:37
Alignment explanation
Indices: 49468448--49468592 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
49468438 GGAAATATAT
49468448 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
49468485 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
49468522 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
49468559 TCCGGGTAAGACCTGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
49468593 TCATCTGAAC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:49469775 original size:12 final size:12
Alignment explanation
Indices: 49469758--49469783 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
49469748 ACAATTTTGG
49469758 CACGGCCTGGCA
1 CACGGCCTGGCA
49469770 CACGGCCTGGCA
1 CACGGCCTGGCA
49469782 CA
1 CA
49469784 TGAGTGTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.42, G:0.31, T:0.08
Consensus pattern (12 bp):
CACGGCCTGGCA
Found at i:49470106 original size:28 final size:28
Alignment explanation
Indices: 49470074--49470133 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
49470064 TTGTGTTGAA
*
49470074 TGATTTATAAGAATGAATGCTTTATGTT
1 TGATTTATAAGAATAAATGCTTTATGTT
* *
49470102 TGATTTATGAGAATAAATGTTTTATGTT
1 TGATTTATAAGAATAAATGCTTTATGTT
49470130 TGAT
1 TGAT
49470134 AAATGTATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (28 bp):
TGATTTATAAGAATAAATGCTTTATGTT
Found at i:49476278 original size:40 final size:40
Alignment explanation
Indices: 49476215--49476307 Score: 132
Period size: 40 Copynumber: 2.3 Consensus size: 40
49476205 CAGTTATTTG
* * * *
49476215 TGGCACTTAGTGTGCGATACAACATATCGTCGGCTATATA
1 TGGCACTTAGTGTACGATACAACAGAGCGTCAGCTATATA
* *
49476255 TGGCACTTAGTGTACGATTCAACAGAGCTTCAGCTATATA
1 TGGCACTTAGTGTACGATACAACAGAGCGTCAGCTATATA
49476295 TGGCACTTAGTGT
1 TGGCACTTAGTGT
49476308 GCAACTTGAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (40 bp):
TGGCACTTAGTGTACGATACAACAGAGCGTCAGCTATATA
Found at i:49476324 original size:40 final size:39
Alignment explanation
Indices: 49476215--49476349 Score: 119
Period size: 40 Copynumber: 3.4 Consensus size: 39
49476205 CAGTTATTTG
* * * * *
49476215 TGGCACTTAGTGTGCGATACAACATATCGTCGGCTATATA
1 TGGCACTTAGTGTGCAATTCAACAGAGCTTC-GCTATATA
* *
49476255 TGGCACTTAGTGTACGATTCAACAGAGCTTCAGCTATATA
1 TGGCACTTAGTGTGCAATTCAACAGAGCTTC-GCTATATA
* * * *
49476295 TGGCACTTAGTGTGCAACTT-GAGATAGCTTCGACTATGTA
1 TGGCACTTAGTGTGCAA-TTCAACAGAGCTTCG-CTATATA
*
49476335 CGGCACTTAGTGTGC
1 TGGCACTTAGTGTGC
49476350 TAGATATCAA
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 77 0.96
41 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (39 bp):
TGGCACTTAGTGTGCAATTCAACAGAGCTTCGCTATATA
Found at i:49479404 original size:45 final size:45
Alignment explanation
Indices: 49479340--49479425 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
49479330 TATGAAATAT
49479340 GAACTCATTGAGTTGTGGTCT-GAGTTCATGATATATGTGACGTCC
1 GAACTCATTGAGTTGTGGTCTAG-GTTCATGATATATGTGACGTCC
*
49479385 GAACTCATTGAGTTGTGGTCTAGGTTCGTGATATATGTGAC
1 GAACTCATTGAGTTGTGGTCTAGGTTCATGATATATGTGAC
49479426 ACATGTTTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
45 38 0.97
46 1 0.03
ACGTcount: A:0.22, C:0.14, G:0.28, T:0.36
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTAGGTTCATGATATATGTGACGTCC
Found at i:49483057 original size:40 final size:40
Alignment explanation
Indices: 49482983--49483124 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
49482973 AACCCAAGTA
* * *
49482983 CCTTCGGGATTTAG-CCAGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
49483022 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
49483062 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAGAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
49483102 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
49483125 CATTCGAATA
Statistics
Matches: 97, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 13 0.13
40 83 0.86
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:49491100 original size:40 final size:40
Alignment explanation
Indices: 49491026--49491247 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
49491016 AACCCAAGTA
* *
49491026 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
49491065 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
49491105 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
49491145 CCTTCGGGACTTAGCCCGGATATAGTCATTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
49491185 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAGAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
49491225 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
49491248 CATTCGAATA
Statistics
Matches: 171, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 12 0.07
40 156 0.91
41 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:49495455 original size:3 final size:3
Alignment explanation
Indices: 49495447--49495476 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
49495437 TGTCTTAGAG
49495447 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
49495477 AAGGAAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:49497827 original size:40 final size:40
Alignment explanation
Indices: 49497783--49497863 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
49497773 TTAATTTTTG
49497783 GACTTTATTAAACTCATCTTAGTTAATTATTGATTTGCTA
1 GACTTTATTAAACTCATCTTAGTTAATTATTGATTTGCTA
**
49497823 GACTTTATTTTACTCATCTTAGTTAATTATTGATTTGCTA
1 GACTTTATTAAACTCATCTTAGTTAATTATTGATTTGCTA
49497863 G
1 G
49497864 TGTAACAGCC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.27, C:0.12, G:0.11, T:0.49
Consensus pattern (40 bp):
GACTTTATTAAACTCATCTTAGTTAATTATTGATTTGCTA
Found at i:49500481 original size:21 final size:22
Alignment explanation
Indices: 49500442--49500482 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
49500432 TTGGAATGGT
49500442 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
*
49500464 CACATGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
49500483 GTGTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:49504785 original size:40 final size:40
Alignment explanation
Indices: 49504683--49504785 Score: 161
Period size: 40 Copynumber: 2.6 Consensus size: 40
49504673 TAGTTTGATA
* * **
49504683 ATTGAGTTGCTAGACTTTATTAAACTCATCTTAGTTAATT
1 ATTGATTTGCTGGACTTTATTTTACTCATCTTAGTTAATT
49504723 ATTGATTTGCTGGACTTTATTTTACTCATCTTAGTTAATT
1 ATTGATTTGCTGGACTTTATTTTACTCATCTTAGTTAATT
*
49504763 ATTGATTTGCTGGACTTCATTTT
1 ATTGATTTGCTGGACTTTATTTT
49504786 CATTAAACTC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 58 1.00
ACGTcount: A:0.24, C:0.13, G:0.14, T:0.50
Consensus pattern (40 bp):
ATTGATTTGCTGGACTTTATTTTACTCATCTTAGTTAATT
Found at i:49506571 original size:13 final size:13
Alignment explanation
Indices: 49506555--49506581 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
49506545 TTTAAATACC
49506555 AAATTAAATTTTG
1 AAATTAAATTTTG
49506568 AAATTAAATTTTG
1 AAATTAAATTTTG
49506581 A
1 A
49506582 TATCAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
AAATTAAATTTTG
Found at i:49507403 original size:25 final size:25
Alignment explanation
Indices: 49507375--49507422 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
49507365 TTATTCATTT
49507375 ATTAAAAATAGTAATTAAAAAATAA
1 ATTAAAAATAGTAATTAAAAAATAA
** **
49507400 ATTAATTATTTTAATTAAAAAAT
1 ATTAAAAATAGTAATTAAAAAAT
49507423 TATTTATTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (25 bp):
ATTAAAAATAGTAATTAAAAAATAA
Found at i:49507413 original size:21 final size:20
Alignment explanation
Indices: 49507389--49507436 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
49507379 AAAATAGTAA
49507389 TTAAAAAATAAATTAATTATT
1 TTAAAAAA-AAATTAATTATT
* *
49507410 TTAATTAAAAAATTATTTATT
1 TTAA-AAAAAAATTAATTATT
49507431 TCTAAA
1 T-TAAA
49507437 TTAAAAACTA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
TTAAAAAAAAATTAATTATT
Found at i:49507549 original size:17 final size:18
Alignment explanation
Indices: 49507522--49507555 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
49507512 TTTTTAATAG
49507522 TAAAAATAAATAAATTTT
1 TAAAAATAAATAAATTTT
*
49507540 TAAAAA-AAATTAATTT
1 TAAAAATAAATAAATTT
49507556 AATTTTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAAATAAATAAATTTT
Found at i:49507549 original size:21 final size:22
Alignment explanation
Indices: 49507523--49507564 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
49507513 TTTTAATAGT
49507523 AAAAA-TAAATAAATTTTTAAA
1 AAAAATTAAATAAATTTTTAAA
* *
49507544 AAAAATTAATTTAATTTTTAA
1 AAAAATTAAATAAATTTTTAA
49507565 TCTAATATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAAATTAAATAAATTTTTAAA
Found at i:49509336 original size:20 final size:20
Alignment explanation
Indices: 49509311--49509350 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
49509301 TGAATGAAAA
49509311 TTGAAAGTGATTAAATTAAG
1 TTGAAAGTGATTAAATTAAG
49509331 TTGAAAGTGATTAAATTAAG
1 TTGAAAGTGATTAAATTAAG
49509351 GTTTAATTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.20, T:0.35
Consensus pattern (20 bp):
TTGAAAGTGATTAAATTAAG
Found at i:49515161 original size:79 final size:81
Alignment explanation
Indices: 49515059--49515243 Score: 245
Period size: 79 Copynumber: 2.3 Consensus size: 81
49515049 GCTCCTCGTT
* *
49515059 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
49515122 GGATTTTGTAAC-TCGCA
64 GGATATGGTAACTTAGCA
* *
49515139 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAATCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
49515203 ATATGGTCACTTAGCA
66 ATATGGTAACTTAGCA
49515219 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49515244 CATCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATGGTAACTTAGCA
Found at i:49515243 original size:40 final size:40
Alignment explanation
Indices: 49515059--49515243 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
49515049 GCTCCTCGTT
* *
49515059 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
49515099 CAAATGCCTTCGGGACTTAACCCGGATTTTGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
49515139 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
** * * *
49515178 CAAATGCCTTC-GGATCTTAATCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
49515219 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49515244 CATCATTCAA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 77 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:49531483 original size:22 final size:22
Alignment explanation
Indices: 49531455--49531576 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
49531445 TTCCACATCC
49531455 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
49531477 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
49531501 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
49531524 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
49531548 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
49531571 ATCACA
1 ATCACA
49531577 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:49531490 original size:47 final size:47
Alignment explanation
Indices: 49531427--49531683 Score: 356
Period size: 47 Copynumber: 5.4 Consensus size: 47
49531417 CCCTTCGGGA
* * *
49531427 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
49531474 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
49531521 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
49531568 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
49531615 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
49531664 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
49531684 GTACATCAAT
Statistics
Matches: 190, Mismatches: 16, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 149 0.78
49 39 0.21
50 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:49538244 original size:47 final size:47
Alignment explanation
Indices: 49538186--49538529 Score: 487
Period size: 47 Copynumber: 7.3 Consensus size: 47
49538176 TGTACAAGTA
* *
49538186 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
49538233 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
49538280 CATATATGAGATAAGGCCGAATGGCCAATATGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * * *
49538327 TGTATGTGTGATAAGGTCGAATGGCTAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
49538374 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
*
49538421 TGTATGA-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATAT-ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
49538468 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
49538515 TATAAATGTGATAAG
1 TATATATGTGATAAG
49538530 TTCCGAAGGG
Statistics
Matches: 264, Mismatches: 29, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
46 2 0.01
47 258 0.98
48 4 0.02
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:49538348 original size:94 final size:94
Alignment explanation
Indices: 49538187--49538508 Score: 538
Period size: 94 Copynumber: 3.4 Consensus size: 94
49538177 GTACAAGTAT
* * *
49538187 ATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
49538252 AATGGCCAATGTGATGAATGTGAACATGC
66 AATGGCCAATGTGATGAATGTGAACATGC
* *
49538281 ATATATGAGATAAGGCCGAATGGCCAATATGATGAATGTGAACATGTGTATGTGTGATAAGGTCG
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
*
49538346 AATGGCTAATGTGATGAATGTGAACATGC
66 AATGGCCAATGTGATGAATGTGAACATGC
*
49538375 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGAGTGATAAGGCCG
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
*
49538440 AATGGCCAATGTGATGAATGTGAA-AGTGT
66 AATGGCCAATGTGATGAATGTGAACA-TGC
* *
49538469 ATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTG
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTG
49538509 GAAGTGTATA
Statistics
Matches: 214, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
93 1 0.00
94 213 1.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (94 bp):
ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
AATGGCCAATGTGATGAATGTGAACATGC
Found at i:49538454 original size:22 final size:22
Alignment explanation
Indices: 49538428--49538501 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
49538418 ATGTGTATGA
49538428 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
* * ***
49538450 GTGATGAATG-TGAAAGTGTATATAT
1 GTGAT-AAGGCCG-AA-TGGCCA-AT
49538475 GTGATAAGGCCGAATGGCCAAT
1 GTGATAAGGCCGAATGGCCAAT
49538497 GTGAT
1 GTGAT
49538502 GGATGTGGAA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
22 13 0.35
23 8 0.22
24 8 0.22
25 8 0.22
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.26
Consensus pattern (22 bp):
GTGATAAGGCCGAATGGCCAAT
Found at i:49550556 original size:13 final size:13
Alignment explanation
Indices: 49550538--49550562 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49550528 AACAAAGTAA
49550538 GACACGGCCGAGC
1 GACACGGCCGAGC
49550551 GACACGGCCGAG
1 GACACGGCCGAG
49550563 TGCCTAAACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.36, G:0.40, T:0.00
Consensus pattern (13 bp):
GACACGGCCGAGC
Found at i:49552500 original size:11 final size:11
Alignment explanation
Indices: 49552486--49552510 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
49552476 TTCATTTTTC
49552486 TTTAATATTAG
1 TTTAATATTAG
49552497 TTTAATATTAG
1 TTTAATATTAG
49552508 TTT
1 TTT
49552511 TTATAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (11 bp):
TTTAATATTAG
Found at i:49563373 original size:15 final size:15
Alignment explanation
Indices: 49563349--49563379 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
49563339 AAAAATGAAA
49563349 AGAAAACCAAAATAC
1 AGAAAACCAAAATAC
*
49563364 AGAAATCCAAAATAC
1 AGAAAACCAAAATAC
49563379 A
1 A
49563380 ATGTCGTATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.19, G:0.06, T:0.10
Consensus pattern (15 bp):
AGAAAACCAAAATAC
Found at i:49566558 original size:39 final size:39
Alignment explanation
Indices: 49566491--49566745 Score: 417
Period size: 39 Copynumber: 6.5 Consensus size: 39
49566481 ACAAAGCATG
* * *
49566491 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
49566531 CGGGACTTTAGCCCGGATATAACACCAGCAAGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
49566571 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
49566610 C-GGACTTAGCCC-GATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
49566647 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
49566686 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
49566725 CGGGACTTAGCCCAGATATAA
1 CGGGACTTAGCCCGGATATAA
49566746 TTCTCGATTA
Statistics
Matches: 206, Mismatches: 6, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
37 26 0.13
38 22 0.11
39 137 0.67
40 21 0.10
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:49566681 original size:115 final size:117
Alignment explanation
Indices: 49566491--49566745 Score: 417
Period size: 115 Copynumber: 2.2 Consensus size: 117
49566481 ACAAAGCATG
* *
49566491 CGGGACTTTAAGCCCGGATATAATACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACAC
1 CGGGAC-TT-AGCCCAGATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACAC
49566556 CAGCAAGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
64 CAGCAAGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
49566610 C-GGACTTAGCCC-GATATAACACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACACC
1 CGGGACTTAGCCCAGATATAACACCAGCAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACACC
*
49566672 AGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
65 AGCAAGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
49566725 CGGGACTTAGCCCAGATATAA
1 CGGGACTTAGCCCAGATATAA
49566746 TTCTCGATTA
Statistics
Matches: 129, Mismatches: 4, Indels: 8
0.91 0.03 0.06
Matches are distributed among these distances:
115 87 0.67
116 28 0.22
117 9 0.07
118 4 0.03
119 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.18
Consensus pattern (117 bp):
CGGGACTTAGCCCAGATATAACACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAACACCA
GCAAGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:49570703 original size:24 final size:24
Alignment explanation
Indices: 49570649--49570715 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 24
49570639 GAGGCTTAGC
*
49570649 CTCTTTTAAT-AACTGGGGCAAAG
1 CTCTTTTGATAAACTGGGGCAAAG
49570672 C-CGTTTTTGATAAACTGGGGCAAAG
1 CTC--TTTTGATAAACTGGGGCAAAG
*
49570697 CTCTTTTCGATAAATTGGG
1 CTCTTTT-GATAAACTGGG
49570716 CCATAGCCCT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
22 1 0.03
23 1 0.03
24 10 0.27
25 24 0.65
26 1 0.03
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (24 bp):
CTCTTTTGATAAACTGGGGCAAAG
Found at i:49570716 original size:24 final size:25
Alignment explanation
Indices: 49570659--49570715 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
49570649 CTCTTTTAAT
*
49570659 AACTGGGGCAAAGCCGTTTTTGATA
1 AACTGGGGCAAAGCCGTTTTCGATA
49570684 AACTGGGGCAAAGCTC-TTTTCGATA
1 AACTGGGGCAAAGC-CGTTTTCGATA
*
49570709 AATTGGG
1 AACTGGG
49570716 CCATAGCCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCGTTTTCGATA
Found at i:49570727 original size:25 final size:25
Alignment explanation
Indices: 49570659--49570728 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
49570649 CTCTTTTAAT
* * *
49570659 AACTGGGGCAAAGCCGTTTTTGATA
1 AACTGGGCCAAAGCCCTTTTCGATA
* *
49570684 AACTGGGGCAAAGCTCTTTTCGATA
1 AACTGGGCCAAAGCCCTTTTCGATA
* *
49570709 AATTGGGCCATAGCCCTTTT
1 AACTGGGCCAAAGCCCTTTT
49570729 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (25 bp):
AACTGGGCCAAAGCCCTTTTCGATA
Found at i:49570960 original size:27 final size:27
Alignment explanation
Indices: 49570930--49571225 Score: 371
Period size: 27 Copynumber: 11.0 Consensus size: 27
49570920 AGGGCAAAAT
* * *
49570930 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49570957 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
49570984 GATATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49571011 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
49571038 GATATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49571065 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
49571092 AGTAATTCTACCCTACAAGAGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
49571119 GGTAATTCTACCCTAC-AGGGTTATTTC
1 GGTAATTCTACCCTACAAGGG-TATTTC
* *
49571146 AGTAATTCTACCCTA-TAGAGGTATTTC
1 GGTAATTCTACCCTACAAG-GGTATTTC
* *
49571173 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
49571200 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
49571226 TAATATTTTA
Statistics
Matches: 235, Mismatches: 30, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 3 0.01
27 229 0.97
28 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:49571273 original size:53 final size:54
Alignment explanation
Indices: 49571216--49571346 Score: 160
Period size: 53 Copynumber: 2.5 Consensus size: 54
49571206 TCTACCCTAC
* * *
49571216 AGGGGTATTTTAAT-ATTTTACAAATC-GAGAGTATTTCGATAATTTCACAAATT
1 AGGGGTATTTTAGTAATTTTACAAAGCTGAGAGTATTTCGATAATTT-ACAAACT
* * * * *
49571269 AGGGGTATTTTGGTAATTTTAC-AAGCTGAGGGTATTTTGGTAATTTTCAAACT
1 AGGGGTATTTTAGTAATTTTACAAAGCTGAGAGTATTTCGATAATTTACAAACT
49571322 AGGGGTATTTTAGTAATTTTACAAA
1 AGGGGTATTTTAGTAATTTTACAAA
49571347 CCAAGGGTAT
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
53 41 0.62
54 25 0.38
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
AGGGGTATTTTAGTAATTTTACAAAGCTGAGAGTATTTCGATAATTTACAAACT
Found at i:49571330 original size:80 final size:80
Alignment explanation
Indices: 49571246--49571395 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
49571236 CAAATCGAGA
** * *
49571246 GTATTTCGA-TAATTTCACAAATTAGGGGTATTTTGGTAATTTTACA-AGCTGAGGGTATTTTGG
1 GTATTT-GAGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAGATC-GAGGGTATTTTGG
49571309 TAATTTTCAAACTAGGG
64 TAATTTTCAAACTAGGG
* * *
49571326 GTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTA
1 GTATTTGAGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAGATCGAGGGTATTTTGGTA
49571391 ATTTT
66 ATTTT
49571396 GTAAACCAAG
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 1 0.02
80 58 0.95
81 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (80 bp):
GTATTTGAGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAGATCGAGGGTATTTTGGTA
ATTTTCAAACTAGGG
Found at i:49571395 original size:27 final size:26
Alignment explanation
Indices: 49571230--49571422 Score: 163
Period size: 27 Copynumber: 7.2 Consensus size: 26
49571220 GTATTTTAAT
* * *
49571230 ATTTTACAAATCGAGAGTATTTCGATA
1 ATTTTACAAA-CGAGGGTATTTTGGTA
* **
49571257 ATTTCACAAATTAGGGGTATTTTGGTA
1 ATTTTACAAACGA-GGGTATTTTGGTA
*
49571284 ATTTTACAAGCTGAGGGTATTTTGGTA
1 ATTTTACAAAC-GAGGGTATTTTGGTA
* *
49571311 ATTTT-CAAACTAGGGGTATTTTAGTA
1 ATTTTACAAACGA-GGGTATTTTGGTA
*
49571337 ATTTTACAAACCAAGGGTATTTTGGTA
1 ATTTTACAAA-CGAGGGTATTTTGGTA
* *
49571364 ATTTTACTGATCGAGGGTATTTTGGTA
1 ATTTTAC-AAACGAGGGTATTTTGGTA
** * * *
49571391 ATTTTGTAAACCAAGGGCATTTTAGTA
1 ATTTTACAAA-CGAGGGTATTTTGGTA
49571418 ATTTT
1 ATTTT
49571423 GTAAATTGAG
Statistics
Matches: 134, Mismatches: 25, Indels: 14
0.77 0.14 0.08
Matches are distributed among these distances:
25 1 0.01
26 23 0.17
27 106 0.79
28 4 0.03
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (26 bp):
ATTTTACAAACGAGGGTATTTTGGTA
Found at i:49571486 original size:27 final size:27
Alignment explanation
Indices: 49571415--49571570 Score: 197
Period size: 27 Copynumber: 5.8 Consensus size: 27
49571405 GGGCATTTTA
* * *
49571415 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
49571442 GT-ATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
49571468 GTAGTTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
49571495 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * * *
49571522 GTAATTCTGTAAATCGAGAGTAACATG
1 GTAATTCTATAAATCGAGGGTAAAACG
*
49571549 GTAATTCTATAAATCAAGGGTA
1 GTAATTCTATAAATCGAGGGTA
49571571 CCTTGGTAAT
Statistics
Matches: 112, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 24 0.21
27 88 0.79
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:49571515 original size:54 final size:54
Alignment explanation
Indices: 49571415--49571570 Score: 233
Period size: 54 Copynumber: 2.9 Consensus size: 54
49571405 GGGCATTTTA
* * * *
49571415 GTAATTTTGTAAATTGAGGGTAAAACGGT-ATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
*
49571468 GTAGTTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
* * *
49571522 GTAATTCTGTAAATCGAGAGTAACATGGTAATTCTATAAATCAAGGGTA
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTA
49571571 CCTTGGTAAT
Statistics
Matches: 93, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 25 0.27
54 68 0.73
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
Found at i:49571577 original size:27 final size:27
Alignment explanation
Indices: 49571415--49571595 Score: 175
Period size: 27 Copynumber: 6.7 Consensus size: 27
49571405 GGGCATTTTA
* * * * *
49571415 GTAATTTTGTAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAACATG
* * *
49571442 GT-ATTCTATAAATTGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAACATG
* * *
49571468 GTAGTTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAACATG
* *
49571495 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAACATG
* *
49571522 GTAATTCTGTAAATCGAGAGTAACATG
1 GTAATTCTATAAATCGAGGGTAACATG
* * *
49571549 GTAATTCTATAAATCAAGGGTACCTTG
1 GTAATTCTATAAATCGAGGGTAACATG
* *
49571576 GTAATTTTATAAATTGAGGG
1 GTAATTCTATAAATCGAGGG
49571596 CATTTTAGTA
Statistics
Matches: 132, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 24 0.18
27 108 0.82
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAACATG
Found at i:49571578 original size:81 final size:80
Alignment explanation
Indices: 49571415--49571595 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 80
49571405 GGGCATTTTA
* * * * *
49571415 GTAATTTTGTAAATTGAGGGTAAAACGGTATTCTATAAATTGAGGGTAAAACGGTAGTTCTGTAA
1 GTAATTTTATAAATTGAGGGTAAAACGGTATTCTATAAATCGAGAGTAAAACGGTAATTCTATAA
*
49571480 ATCGAGGGTAAAATG
66 ATCAAGGGTAAAATG
* * * * *
49571495 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGAGTAACATGGTAATTCTATA
1 GTAATTTTATAAATTGAGGGTAAAACGGT-ATTCTATAAATCGAGAGTAAAACGGTAATTCTATA
***
49571560 AATCAAGGGTACCTTG
65 AATCAAGGGTAAAATG
49571576 GTAATTTTATAAATTGAGGG
1 GTAATTTTATAAATTGAGGG
49571596 CATTTTAGTA
Statistics
Matches: 84, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 26 0.31
81 58 0.69
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.31
Consensus pattern (80 bp):
GTAATTTTATAAATTGAGGGTAAAACGGTATTCTATAAATCGAGAGTAAAACGGTAATTCTATAA
ATCAAGGGTAAAATG
Found at i:49573736 original size:31 final size:31
Alignment explanation
Indices: 49573693--49573771 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
49573683 TTGAACGGTT
*
49573693 ACTGGGCTGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
49573724 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
49573755 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
49573772 ATTGTAAACG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:49574017 original size:24 final size:25
Alignment explanation
Indices: 49573985--49574031 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
49573975 GCCTAGCGTC
49573985 TTTTAAT-AACTGGGGCAAAGCCTT
1 TTTTAATAAACTGGGGCAAAGCCTT
*
49574009 TTTTGATAAACTGGGGCAAAGCC
1 TTTTAATAAACTGGGGCAAAGCC
49574032 CATTTCGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCTT
Found at i:49574041 original size:25 final size:25
Alignment explanation
Indices: 49573992--49574057 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
49573982 GTCTTTTAAT
** *
49573992 AACTGGGGCAAAGCCTTTTTTGATA
1 AACTGGGGCAAAGCCCATTTCGATA
49574017 AACTGGGGCAAAGCCCATTTCGATA
1 AACTGGGGCAAAGCCCATTTCGATA
* * *
49574042 AATTGAGGCATAGCCC
1 AACTGGGGCAAAGCCC
49574058 TTTTAGCACT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCATTTCGATA
Found at i:49574323 original size:27 final size:27
Alignment explanation
Indices: 49574264--49574504 Score: 299
Period size: 27 Copynumber: 9.0 Consensus size: 27
49574254 AGGGCAAAAT
* *
49574264 GGTAATTTTACCC-A-A-GGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
49574288 GGTAATTCTACCCTACAGGGGTATCTA
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
49574315 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
49574342 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
49574369 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
49574396 GGTAATTCTACCTTATAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
49574423 AGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
49574450 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
49574477 AGTAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
49574504 G
1 G
49574505 ATATTTTACA
Statistics
Matches: 189, Mismatches: 25, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
24 12 0.06
25 1 0.01
26 1 0.01
27 175 0.93
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:49574523 original size:27 final size:27
Alignment explanation
Indices: 49574492--49574647 Score: 90
Period size: 27 Copynumber: 5.9 Consensus size: 27
49574482 TTCTACCCTA
49574492 CAGAGGTATTTCGAT-ATTTTACAAAT
1 CAGAGGTATTTCGATAATTTTACAAAT
* *
49574518 C-GAGAGTATTTCGTTAATTTCACAAAT
1 CAGAG-GTATTTCGATAATTTTACAAAT
* * * **
49574545 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGAGGTATTTCGATAATTTTACAAAT
* * * *
49574572 CA-AGGGTATTTTGGT-ATTTTACATAC
1 CAGA-GGTATTTCGATAATTTTACAAAT
* *
49574598 CAGGGGTATTT-TAGTAATTTTACAAA-
1 CAGAGGTATTTCGA-TAATTTTACAAAT
* * *
49574624 CTAGGGGTATTTTGGTAATTTTAC
1 C-AGAGGTATTTCGATAATTTTAC
49574648 TGACCGAGGG
Statistics
Matches: 104, Mismatches: 17, Indels: 17
0.75 0.12 0.12
Matches are distributed among these distances:
25 3 0.03
26 30 0.29
27 69 0.66
28 2 0.02
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (27 bp):
CAGAGGTATTTCGATAATTTTACAAAT
Found at i:49574580 original size:80 final size:80
Alignment explanation
Indices: 49574496--49574647 Score: 193
Period size: 80 Copynumber: 1.9 Consensus size: 80
49574486 ACCCTACAGA
* *
49574496 GGTATTTCGATATTTTACAAATC-GAGAGTA-TTTCGTTAATTTCACAAA-TCAGGGGTATTTTG
1 GGTATTTCGATATTTTACAAACCAG-GAGTATTTTAG-TAATTTCACAAACT-AGGGGTATTTTG
49574558 GTAATTTTACAAGCCAAG
63 GTAATTTTACAAGCCAAG
* * * * *
49574576 GGTATTTTGGTATTTTACATACCAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTA
1 GGTATTTCGATATTTTACAAACCAGGAGTATTTTAGTAATTTCACAAACTAGGGGTATTTTGGTA
49574641 ATTTTAC
66 ATTTTAC
49574648 TGACCGAGGG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
80 56 0.90
81 6 0.10
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.41
Consensus pattern (80 bp):
GGTATTTCGATATTTTACAAACCAGGAGTATTTTAGTAATTTCACAAACTAGGGGTATTTTGGTA
ATTTTACAAGCCAAG
Found at i:49574605 original size:53 final size:53
Alignment explanation
Indices: 49574545--49574687 Score: 177
Period size: 53 Copynumber: 2.7 Consensus size: 53
49574535 TTTCACAAAT
49574545 CAGGGGTATTTTGGTAATTTTACAAGCCAAGGGTATTTTGGT-ATTTTACAT-AC
1 CAGGGGTATTTTGGTAATTTTACAA-CCAAGGGTATTTTGGTAATTTTAC-TGAC
* * *
49574598 CAGGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACTGAC
1 CAGGGGTATTTTGGTAATTTTAC-AACCAAGGGTATTTTGGTAATTTTACTGAC
49574652 C-GAGGGTATTTTGGTAAATTTGTA-AACCAAGGGTAT
1 CAG-GGGTATTTTGGT-AATTT-TACAACCAAGGGTAT
49574688 GTCAGTAATT
Statistics
Matches: 78, Mismatches: 6, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
53 38 0.49
54 33 0.42
55 5 0.06
56 2 0.03
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (53 bp):
CAGGGGTATTTTGGTAATTTTACAACCAAGGGTATTTTGGTAATTTTACTGAC
Found at i:49574658 original size:27 final size:26
Alignment explanation
Indices: 49574545--49574687 Score: 157
Period size: 27 Copynumber: 5.3 Consensus size: 26
49574535 TTTCACAAAT
49574545 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTATTTTGGTAATTTTACAA-C
*
49574572 CAAGGGTATTTTGGT-ATTTTACATAC
1 CAGGGGTATTTTGGTAATTTTACA-AC
*
49574598 CAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTAC-AAC
* *
49574625 TAGGGGTATTTTGGTAATTTTACTGAC
1 CAGGGGTATTTTGGTAATTTTAC-AAC
49574652 C-GAGGGTATTTTGGTAAATTTGTA-AAC
1 CAG-GGGTATTTTGGT-AATTT-TACAAC
*
49574679 CAAGGGTAT
1 CAGGGGTAT
49574688 GTCAGTAATT
Statistics
Matches: 99, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
26 23 0.23
27 68 0.69
28 6 0.06
29 2 0.02
ACGTcount: A:0.28, C:0.10, G:0.24, T:0.38
Consensus pattern (26 bp):
CAGGGGTATTTTGGTAATTTTACAAC
Found at i:49574712 original size:27 final size:26
Alignment explanation
Indices: 49574670--49574841 Score: 83
Period size: 27 Copynumber: 6.4 Consensus size: 26
49574660 TTTTGGTAAA
* * **
49574670 TTTGTAAACCAAGGGTATGTCAGTAAT
1 TTTGTAAATCGAGGGTAAATCA-TAAT
* *
49574697 TTTGTAAATCGGGGGTAAAATGATAAT
1 TTTGTAAATCGAGGGT-AAATCATAAT
**
49574724 TTTGTAAATCGAGGGTAAAATGGTAAT
1 TTTGTAAATCGAGGGT-AAATCATAAT
* * * **
49574751 TCTGCAAAACGAGGGTAAAATGGTAAT
1 TTTGTAAATCGAGGGT-AAATCATAAT
* * * *
49574778 TCTATAAATCGAGGGTAAAACGGTAAT
1 TTTGTAAATCGAGGGTAAATC-ATAAT
* * * **
49574805 TCTATAAATTGAGGGTAAAATGGTAAT
1 TTTGTAAATCGAGGGT-AAATCATAAT
*
49574832 TCTGTAAATC
1 TTTGTAAATC
49574842 AATGGTACTT
Statistics
Matches: 121, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.02
27 112 0.93
28 6 0.05
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (26 bp):
TTTGTAAATCGAGGGTAAATCATAAT
Found at i:49574748 original size:81 final size:80
Alignment explanation
Indices: 49574663--49574848 Score: 194
Period size: 81 Copynumber: 2.3 Consensus size: 80
49574653 GAGGGTATTT
* ** * * * * *
49574663 TGGTAAATT-TGTAAACCAAGGGTATGTCAGTAATTTTGTAAATCGGGGGTAAAATGATAATTTT
1 TGGT-AATTCTGTAAAACAAGGGTAAAT-AGTAATTCTATAAATCGAGGGTAAAACGATAATTCT
*
49574727 GTAAATCGAGGGTAAAA
64 ATAAATCGAGGGTAAAA
* * * *
49574744 TGGTAATTCTGCAAAACGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
1 TGGTAATTCTGTAAAACAAGGGT-AAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTA
*
49574809 TAAATTGAGGGTAAAA
65 TAAATCGAGGGTAAAA
* *
49574825 TGGTAATTCTGTAAATCAATGGTA
1 TGGTAATTCTGTAAAACAAGGGTA
49574849 CTTTGGTAAT
Statistics
Matches: 85, Mismatches: 18, Indels: 5
0.79 0.17 0.05
Matches are distributed among these distances:
80 5 0.06
81 78 0.92
82 2 0.02
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.31
Consensus pattern (80 bp):
TGGTAATTCTGTAAAACAAGGGTAAATAGTAATTCTATAAATCGAGGGTAAAACGATAATTCTAT
AAATCGAGGGTAAAA
Found at i:49574848 original size:27 final size:27
Alignment explanation
Indices: 49574692--49574841 Score: 210
Period size: 27 Copynumber: 5.6 Consensus size: 27
49574682 GGGTATGTCA
* *
49574692 GTAATTTTGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
49574719 ATAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
49574746 GTAATTCTGCAAAACGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
49574773 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
49574800 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
49574827 GTAATTCTGTAAATC
1 GTAATTCTGTAAATC
49574842 AATGGTACTT
Statistics
Matches: 109, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 109 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:49574856 original size:81 final size:81
Alignment explanation
Indices: 49574692--49574873 Score: 211
Period size: 81 Copynumber: 2.2 Consensus size: 81
49574682 GGGTATGTCA
* * * * *
49574692 GTAATTTTGTAAATCGGGGGTAAAATGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGCA
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTGCA
*
49574757 AAACGAGGGTAAAATG
66 AAACAAGGGTAAAATG
* * * *
49574773 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTGCA
* * ***
49574838 AATCAATGGTACTTTG
66 AAACAAGGGTAAAATG
* *
49574854 GTAATTTTACAAATTGAGGG
1 GTAATTTTATAAATCGAGGG
49574874 CATTTCAGTA
Statistics
Matches: 83, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.32
Consensus pattern (81 bp):
GTAATTTTATAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTCTGCA
AAACAAGGGTAAAATG
Found at i:49574857 original size:54 final size:54
Alignment explanation
Indices: 49574709--49574873 Score: 204
Period size: 54 Copynumber: 3.1 Consensus size: 54
49574699 TGTAAATCGG
* * * **
49574709 GGGTAAAATGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTGCAAAACGA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATTGA
* * *
49574763 GGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATTGA
* * *** *
49574817 GGGTAAAATGGTAATTCTGTAAATCAATGGTACTTTGGTAATTTTACAAATTGA
1 GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATTGA
49574871 GGG
1 GGG
49574874 CATTTCAGTA
Statistics
Matches: 94, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 94 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (54 bp):
GGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTACAAATTGA
Found at i:49576631 original size:26 final size:26
Alignment explanation
Indices: 49576595--49576702 Score: 153
Period size: 26 Copynumber: 4.2 Consensus size: 26
49576585 CTTATCTGGG
* * * *
49576595 TAATCAAAAAGTTCACAAAGAACTTT
1 TAATCAGAAAGCTCACGAAGAGCTTT
*
49576621 TAATCAGAAAGCTCATGAAGAGCTTT
1 TAATCAGAAAGCTCACGAAGAGCTTT
*
49576647 TCATCAGAAAGCTCACGAAGAGCTTT
1 TAATCAGAAAGCTCACGAAGAGCTTT
*
49576673 TCATCAGAAAGCTCACGAAGAGCTTT
1 TAATCAGAAAGCTCACGAAGAGCTTT
49576699 TAAT
1 TAAT
49576703 TAGGAGCTCT
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (26 bp):
TAATCAGAAAGCTCACGAAGAGCTTT
Found at i:49576860 original size:65 final size:65
Alignment explanation
Indices: 49576751--49576902 Score: 187
Period size: 65 Copynumber: 2.3 Consensus size: 65
49576741 GAGCCATATC
* * ** * * *
49576751 AGGATGCTCACAAAAAGCTGTGTTTGAGTTTGCAACATATGCAGGATCACAACTGATTATAAAAT
1 AGGATGCTCACAAAGAGCTGCGTTTGAGTCCGCAACATAAGCAGGATCACAACCGATCATAAAAT
* * * * *
49576816 AGGATGCTCACACAGAGCTGCGTTTGTGTCCGCAATATAAGCAGGATCATAACCGATCATATAAT
1 AGGATGCTCACAAAGAGCTGCGTTTGAGTCCGCAACATAAGCAGGATCACAACCGATCATAAAAT
*
49576881 AGGACGCTCACAAAGAGCTGCG
1 AGGATGCTCACAAAGAGCTGCG
49576903 ATAGTCCTCA
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
65 73 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (65 bp):
AGGATGCTCACAAAGAGCTGCGTTTGAGTCCGCAACATAAGCAGGATCACAACCGATCATAAAAT
Found at i:49578101 original size:6 final size:6
Alignment explanation
Indices: 49578090--49578117 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
49578080 TTTGAGACCA
49578090 CAAATT CAAATT CAAATT CAAATT CAAA
1 CAAATT CAAATT CAAATT CAAATT CAAA
49578118 ATAATTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.29
Consensus pattern (6 bp):
CAAATT
Found at i:49579089 original size:22 final size:22
Alignment explanation
Indices: 49579064--49579114 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
49579054 CATTAGGGAC
49579064 TATGTGATCTGAGCTCATGAGT
1 TATGTGATCTGAGCTCATGAGT
*
49579086 TATGTGGTCTGAGCTCATGAGT
1 TATGTGATCTGAGCTCATGAGT
49579108 TATGTGA
1 TATGTGA
49579115 CACATGTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.22, C:0.12, G:0.29, T:0.37
Consensus pattern (22 bp):
TATGTGATCTGAGCTCATGAGT
Found at i:49582244 original size:19 final size:21
Alignment explanation
Indices: 49582220--49582259 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
49582210 TATACATGAT
49582220 AGTATATGT-GATAA-TGTGA
1 AGTATATGTGGATAATTGTGA
*
49582239 AGTATATTTGGATAATTGTGA
1 AGTATATGTGGATAATTGTGA
49582260 TGTGAATGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 5 0.28
21 5 0.28
ACGTcount: A:0.35, C:0.00, G:0.25, T:0.40
Consensus pattern (21 bp):
AGTATATGTGGATAATTGTGA
Found at i:49582375 original size:96 final size:93
Alignment explanation
Indices: 49582259--49582702 Score: 661
Period size: 90 Copynumber: 4.8 Consensus size: 93
49582249 GATAATTGTG
* *
49582259 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
49582324 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGG-CTAATGGCCGATGTGATGA
49582353 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
49582418 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
62 ATATGTGATAAGG-CTAATGGCCGATGTGATGA
49582451 ATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
49582515 GTGATGAGGCTAATGGCCGATGTGATGA
66 GTGATAAGGCTAATGGCCGATGTGATGA
49582543 ATGTGAAAGTG--TATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATA-
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
49582604 GTGATGAGGCTAAT-GCCGATGTGATGA
66 GTGATAAGGCTAATGGCCGATGTGATGA
* * * * * *
49582631 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCC-AAGTGATGGATGTGAAAGTGTATAAA
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
49582694 TGTGATAAG
65 TGTGATAAG
49582703 TCCCGAAGGG
Statistics
Matches: 329, Mismatches: 12, Indels: 21
0.91 0.03 0.06
Matches are distributed among these distances:
88 24 0.07
89 16 0.05
90 87 0.26
91 10 0.03
92 30 0.09
93 15 0.05
94 9 0.03
95 24 0.07
96 69 0.21
98 45 0.14
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (93 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCTAATGGCCGATGTGATGA
Found at i:49582505 original size:46 final size:47
Alignment explanation
Indices: 49582259--49582702 Score: 665
Period size: 46 Copynumber: 9.6 Consensus size: 47
49582249 GATAATTGTG
* *
49582259 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49582306 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49582353 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49582402 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49582451 ATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49582497 ATGTGAAAGTGTATATATGTGATGAGG-CTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49582543 ATGTGAAAGTG--TATATGTGATAAGGCCTAAT-GCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49582587 ATGTGAAAGTGTATATA-GTGATGAGG-CTAAT-GCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * *
49582631 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCC-AAGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
49582677 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
49582703 TCCCGAAGGG
Statistics
Matches: 370, Mismatches: 16, Indels: 22
0.91 0.04 0.05
Matches are distributed among these distances:
44 74 0.20
45 23 0.06
46 98 0.26
47 81 0.22
49 94 0.25
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:49584995 original size:40 final size:40
Alignment explanation
Indices: 49584935--49585172 Score: 398
Period size: 40 Copynumber: 6.1 Consensus size: 40
49584925 CTCGACAATG
*
49584935 ATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
49584975 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
*
49585015 ATCCGGGCTAAGT-TCGAAGAGCATTCGTGC-AGTGAT-T
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
49585052 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
* *
49585092 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
49585132 AT-CGGGCTAA-TCCCGAAGAGCATTCGTGCTAGTG-TGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
49585169 ATCC
1 ATCC
49585173 AGACTAGTTC
Statistics
Matches: 187, Mismatches: 7, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
37 18 0.10
38 46 0.25
39 30 0.16
40 93 0.50
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGT
Found at i:49585065 original size:77 final size:79
Alignment explanation
Indices: 49584935--49585172 Score: 405
Period size: 77 Copynumber: 3.1 Consensus size: 79
49584925 CTCGACAATG
* *
49584935 ATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTTC-GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
49585000 TCGTGCTAGTGATGT
65 TCGTGCTAGTGATGT
49585015 ATCCGGGCTAAGTTCGAAGAGCATTCGTGC-AGTGAT-TATCCGGGCTAAGTCCCGAAGAGCATT
1 ATCCGGGCTAAGTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
49585078 CGTGCTAGTGATGT
66 CGTGCTAGTGATGT
49585092 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT-CGGGCTAA-TCCCGAAGAGCAT
1 ATCCGGGCTAAGTT-CGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCAT
49585155 TCGTGCTAGTG-TGT
65 TCGTGCTAGTGATGT
49585169 ATCC
1 ATCC
49585173 AGACTAGTTC
Statistics
Matches: 154, Mismatches: 1, Indels: 9
0.94 0.01 0.05
Matches are distributed among these distances:
77 62 0.40
78 46 0.30
79 29 0.19
80 17 0.11
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATGT
Found at i:49585172 original size:117 final size:117
Alignment explanation
Indices: 49584935--49585281 Score: 409
Period size: 117 Copynumber: 2.9 Consensus size: 117
49584925 CTCGACAATG
*
49584935 ATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
* *
49585000 TCGTGCTAGTGATGTATCCGGGCTAAGTTCGAAGAGCATTCGTGCAGTGATT
66 TCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCAGTGATT
*
49585052 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
49585117 TCGTGCTAGTGATATAT-CGGGCTAA-TCCCGAAGAGCATTCGTGCTAGTGTGTATCCAGACT
66 TCGTGCTAGTGATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGC-A--GTG-AT------T
* * * *
49585178 AGTTCCGACCGGCTAAGTTCCGAAGAGCATTCGTGCTAGTCATATAT-CGTGCTAA-T--CGAAG
1 A--TCCG---GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
* * *
49585239 AGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCGAAGAGCA
61 AGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAGCA
49585282 ATCATGCTGG
Statistics
Matches: 201, Mismatches: 11, Indels: 25
0.85 0.05 0.11
Matches are distributed among these distances:
115 1 0.00
116 24 0.12
117 80 0.40
119 3 0.01
120 2 0.01
126 2 0.01
127 25 0.12
128 21 0.10
129 2 0.01
130 7 0.03
131 34 0.17
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (117 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCAT
TCGTGCTAGTGATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCAGTGATT
Found at i:49585260 original size:36 final size:39
Alignment explanation
Indices: 49585196--49585294 Score: 114
Period size: 36 Copynumber: 2.6 Consensus size: 39
49585186 CCGGCTAAGT
* * *
49585196 TCCGAAGAGCATTCGTGCTAGTCATATAT-CGTGCTA-A
1 TCCGAAGAGCATTCGTGCTGGTGATATATCCGGGCTAGA
* *
49585233 T-CGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGG
1 TCCGAAGAGCATTCGTGCTGGTGATATATCCGGGCTAGA
* *
49585271 TCCGAAGAGCAATCATGCTGGTGA
1 TCCGAAGAGCATTCGTGCTGGTGA
49585295 CGTGTATTCG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
36 24 0.47
37 7 0.14
38 1 0.02
39 19 0.37
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGAAGAGCATTCGTGCTGGTGATATATCCGGGCTAGA
Found at i:49585301 original size:131 final size:130
Alignment explanation
Indices: 49585057--49585289 Score: 330
Period size: 131 Copynumber: 1.8 Consensus size: 130
49585047 TGATTATCCG
* *
49585057 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTCATATATCCGGGCTAAG-TCCGAAGAGCATTCGTG
* *
49585122 CTAGTGATATATCGGGCTAATCCCGAAGAGCATTCGTGCTAGTGTGTATCCAGACTAGTTCCGAC
65 CTAGTGATATATCGGGCTAATCCCGAAGAGCAATCATGCTAGTGTGTATCCAGACTAGTTCCGAC
49585187 C
130 C
* *
49585188 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTCATATAT-CGTGCTAA-T-CGAAGAGCATTCGTGC
1 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTCATATATCCGGGCTAAGTCCGAAGAGCATTCGTGC
* * *
49585250 TGGTGTTATATCCGGGCTAGGT-CCGAAGAGCAATCATGCT
66 TAGTGATATAT-CGGGCTA-ATCCCGAAGAGCAATCATGCT
49585290 GGTGACGTGT
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
127 25 0.27
128 24 0.26
129 1 0.01
130 7 0.08
131 34 0.37
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (130 bp):
GGCTAAGTCCCGAAGAGCATTCGTGCTAGTCATATATCCGGGCTAAGTCCGAAGAGCATTCGTGC
TAGTGATATATCGGGCTAATCCCGAAGAGCAATCATGCTAGTGTGTATCCAGACTAGTTCCGACC
Found at i:49588921 original size:49 final size:47
Alignment explanation
Indices: 49588861--49589310 Score: 685
Period size: 47 Copynumber: 9.6 Consensus size: 47
49588851 GATAATTGTG
* *
49588861 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
49588908 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49588955 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
49589004 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49589053 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA--TG-TGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49589097 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49589144 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
49589191 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * *
49589238 ATGTGAAAGTGTATATATGTGACTGA-G-CTGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGA-TAAGGCCT-AATGGCCGATGTGATGA
*
49589285 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
49589311 TCCCGAAGGG
Statistics
Matches: 376, Mismatches: 19, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
44 40 0.11
45 2 0.01
46 6 0.02
47 231 0.61
48 3 0.01
49 94 0.25
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:49593709 original size:24 final size:23
Alignment explanation
Indices: 49593678--49593723 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
49593668 CAATATAATA
*
49593678 GGAAGCTCACCAAGAGCCATATCG
1 GGAAGCTCACAAAGAGCC-TATCG
49593702 GGAAGCTCACAAAGAGCCTATC
1 GGAAGCTCACAAAGAGCCTATC
49593724 AAGAAGCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.35, C:0.28, G:0.24, T:0.13
Consensus pattern (23 bp):
GGAAGCTCACAAAGAGCCTATCG
Found at i:49593729 original size:23 final size:24
Alignment explanation
Indices: 49593679--49593731 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
49593669 AATATAATAG
* **
49593679 GAAGCTCACCAAGAGCCATATCGG
1 GAAGCTCACAAAGAGCCATATCAA
49593703 GAAGCTCACAAAGAGCC-TATCAA
1 GAAGCTCACAAAGAGCCATATCAA
49593726 GAAGCT
1 GAAGCT
49593732 TATCTGGGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.38, C:0.26, G:0.23, T:0.13
Consensus pattern (24 bp):
GAAGCTCACAAAGAGCCATATCAA
Found at i:49596484 original size:15 final size:15
Alignment explanation
Indices: 49596464--49596495 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
49596454 AAACCTATAG
*
49596464 AAGTTAAATTAAACT
1 AAGTTAAATAAAACT
49596479 AAGTTAAATAAAACT
1 AAGTTAAATAAAACT
49596494 AA
1 AA
49596496 CAGAATTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGTTAAATAAAACT
Found at i:49600119 original size:27 final size:27
Alignment explanation
Indices: 49600074--49600213 Score: 178
Period size: 27 Copynumber: 5.2 Consensus size: 27
49600064 GTGACGAAGT
49600074 ACCAGATACAGATAT-TGTGGCAGAGCC
1 ACCAGA-ACAGATATATGTGGCAGAGCC
49600101 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATATATGTGGCAGAGCC
* * *
49600128 ACTAGATCAGATA-ATCGTGGCATAGCC
1 ACCAGAACAGATATAT-GTGGCAGAGCC
*
49600155 ACCAGAATAGATATATGTGGCAGAGCC
1 ACCAGAACAGATATATGTGGCAGAGCC
* *
49600182 ACCAGATCAGATA-ATTGTGGCATAGCC
1 ACCAGAACAGATATA-TGTGGCAGAGCC
49600209 ACCAG
1 ACCAG
49600214 GACGCTTCCT
Statistics
Matches: 99, Mismatches: 10, Indels: 8
0.85 0.09 0.07
Matches are distributed among these distances:
26 11 0.11
27 86 0.87
28 2 0.02
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
ACCAGAACAGATATATGTGGCAGAGCC
Found at i:49600155 original size:54 final size:54
Alignment explanation
Indices: 49600074--49600213 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 54
49600064 GTGACGAAGT
*
49600074 ACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCC
* * *
49600128 ACTAGATCAGATAATCGTGGCATAGCCACCAGAATAGATATATGTGGCAGAGCC
1 ACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCC
49600182 ACCAGATCAGATAATTGTGGCATAGCCACCAG
1 ACCAGATCAGATAATTGTGGCATAGCCACCAG
49600214 GACGCTTCCT
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 74 0.94
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (54 bp):
ACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCC
Found at i:49600381 original size:28 final size:26
Alignment explanation
Indices: 49600319--49600381 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
49600309 AAAGTAACCC
** * *
49600319 TAGGGGTATAATGGTAATTTTTCACC
1 TAGGGGTATAACAGTAATTTTCCACA
49600345 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
49600373 TAGGGGTAT
1 TAGGGGTAT
49600382 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.35
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:49601856 original size:26 final size:26
Alignment explanation
Indices: 49601820--49601926 Score: 198
Period size: 26 Copynumber: 4.1 Consensus size: 26
49601810 GAAATTCCCT
49601820 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
49601846 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
49601872 TCAT-GAAGCATTTACCTAACCCATTA
1 TCATGGAA-CATTTACCTAACCCATTA
49601898 TCATGGAACATTTACCTAACCCATTA
1 TCATGGAACATTTACCTAACCCATTA
49601924 TCA
1 TCA
49601927 ATTTGTATCA
Statistics
Matches: 79, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
25 3 0.04
26 73 0.92
27 3 0.04
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.31
Consensus pattern (26 bp):
TCATGGAACATTTACCTAACCCATTA
Found at i:49604614 original size:26 final size:27
Alignment explanation
Indices: 49604585--49604638 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
49604575 TATAGAAGGA
49604585 TGATA-TACTAGAAAGAACATATGTTT
1 TGATAGTACTAGAAAGAACATATGTTT
*
49604611 TGATAGTATTAGAAAGAACATATGTTT
1 TGATAGTACTAGAAAGAACATATGTTT
49604638 T
1 T
49604639 CTCTCTCCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.41, C:0.06, G:0.17, T:0.37
Consensus pattern (27 bp):
TGATAGTACTAGAAAGAACATATGTTT
Done.