Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 157 of 325
Found at i:50380186 original size:100 final size:100
Alignment explanation
Indices: 50380008--50380200 Score: 298
Period size: 100 Copynumber: 1.9 Consensus size: 100
50379998 TATTGTGAGG
*
50380008 TCACATGTGTAGTACTAAATGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAATGCAGGCTACCACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
50380073 AAGTGCAAGCTACTAGGCGTACCCGATAACTTCGA
66 AAGTGCAAGCTACTAGGCGTACCCGATAACTTCGA
* * * *
50380108 TCACGTGTGTAGTGA-TAAGTGCAGGCTACCACGTGTACTGGATAATTGGTCGCATGTGTAGTGC
1 TCACATGTGTAGT-ACTAAATGCAGGCTACCACGTGTACCGGATAATTGGTCGCATGTGTAGTAC
* * *
50380172 TAAGTGCAGGCTACTATGCGTACCGGATA
65 TAAGTGCAAGCTACTAGGCGTACCCGATA
50380201 GCCTTGTCTA
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 83 0.99
101 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAATGCAGGCTACCACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
AAGTGCAAGCTACTAGGCGTACCCGATAACTTCGA
Found at i:50387181 original size:40 final size:40
Alignment explanation
Indices: 50387126--50387208 Score: 157
Period size: 40 Copynumber: 2.1 Consensus size: 40
50387116 GTCCTATGTT
*
50387126 TTGATGTGATGATATAGTTAGCTTTGTTTGTTATGCATGA
1 TTGATGTGATGATATAGTTAGATTTGTTTGTTATGCATGA
50387166 TTGATGTGATGATATAGTTAGATTTGTTTGTTATGCATGA
1 TTGATGTGATGATATAGTTAGATTTGTTTGTTATGCATGA
50387206 TTG
1 TTG
50387209 GTAATACATC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.23, C:0.04, G:0.25, T:0.48
Consensus pattern (40 bp):
TTGATGTGATGATATAGTTAGATTTGTTTGTTATGCATGA
Found at i:50387694 original size:15 final size:15
Alignment explanation
Indices: 50387674--50387723 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
50387664 TATGATACTA
50387674 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
*
50387689 TATCTTGAATTTCTT
1 TATCTTGGATTTCTT
* * *
50387704 TTTCCTGGACTTCTT
1 TATCTTGGATTTCTT
50387719 TATCT
1 TATCT
50387724 CGGTTTTCAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.14, C:0.18, G:0.10, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:50429879 original size:21 final size:21
Alignment explanation
Indices: 50429854--50429899 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
50429844 GCCGAAATTA
*
50429854 TCAAAAGAAAAATAAGAAAAT
1 TCAAAAGAAAAAGAAGAAAAT
*
50429875 TCAAAAGAAAAAGAATAAAAT
1 TCAAAAGAAAAAGAAGAAAAT
50429896 TCAA
1 TCAA
50429900 GCTTAGGGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.70, C:0.07, G:0.09, T:0.15
Consensus pattern (21 bp):
TCAAAAGAAAAAGAAGAAAAT
Found at i:50439431 original size:46 final size:44
Alignment explanation
Indices: 50439379--50439478 Score: 130
Period size: 46 Copynumber: 2.2 Consensus size: 44
50439369 GACGGGATCT
* * *
50439379 AGTGTAAGACGTGTCTGGGACATGCATCAGCCT-CGAGATGTAAGCC
1 AGTGTAAGACATCTCTGGGACATGCATC-GACTACGAGATGT--GCC
*
50439425 AGTGTAAGACATCTCTGGGACATGCATCGACTACGAGATGTGTC
1 AGTGTAAGACATCTCTGGGACATGCATCGACTACGAGATGTGCC
50439469 AGTGTAAGAC
1 AGTGTAAGAC
50439479 CATGTTTAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
44 12 0.24
45 3 0.06
46 34 0.69
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATCTCTGGGACATGCATCGACTACGAGATGTGCC
Found at i:50439586 original size:50 final size:48
Alignment explanation
Indices: 50439468--50439644 Score: 176
Period size: 48 Copynumber: 3.7 Consensus size: 48
50439458 CGAGATGTGT
* * * *
50439468 CAGTGTAAGACCATGTTTAGGACATGGCATCAACATGTATAGAGGTGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGATAGAGGAGC
* * * ** *
50439516 CAGTGTAAGACAATGACTGGGACATAGCATCGGCATGGATATGTGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGATA-GAG-GAGC
* * * * *
50439566 TAGTGTAAGACCATGTCTGGGACATGGCATCCAC-TTGATGGATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGATAGAGGAGC
* *
50439613 CAGTGTAGGACCATGTTTGGGACATGGCATCA
1 CAGTGTAAGACCATGTCTGGGACATGGCATCA
50439645 GCATTATACC
Statistics
Matches: 103, Mismatches: 24, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
47 32 0.31
48 34 0.33
49 6 0.06
50 31 0.30
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCAACATGGATAGAGGAGC
Found at i:50439629 original size:145 final size:137
Alignment explanation
Indices: 50439379--50439652 Score: 325
Period size: 145 Copynumber: 1.9 Consensus size: 137
50439369 GACGGGATCT
* * *
50439379 AGTGTAAGACGTGTCTGGGACATGCATCAGCCTCGAGATGTAAGCCAGTGTAAGACATCTCTGGG
1 AGTGTAAGACATGACTGGGACATGCATCAGCATCGAGATGTAAGCCAGTGTAAGACATCTCTGGG
* * *
50439444 ACATGCATCGACTACGAGATGTGTCAGTGTAAGACCATGTTTAGGACATGGCATCAACATGTATA
66 ACATGCATCCACTACGAGATGAGCCAGTGTAAGACCATGTTTAGGACATGGCATCAACAT-TATA
50439509 GAGGTGCC
130 GAGGTGCC
* * * * *
50439517 AGTGTAAGACAATGACTGGGACATAGCATCGGCATGGATATGTGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGAC-ATGACTGGGACAT-GCATCAGCATCGAGATGT-A-AGCCAGTGTAAGA-CATCT
* * * *
50439582 CTGGGACATGGCATCCACT-TGATGGATGAGCCAGTGTAGGACCATGTTTGGGACATGGCATCAG
61 CTGGGACAT-GCATCCACTACGA--GATGAGCCAGTGTAAGACCATGTTTAGGACATGGCATCAA
50439646 CATTATA
123 CATTATA
50439653 CCTTATGTTT
Statistics
Matches: 113, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
138 10 0.09
139 11 0.10
140 14 0.12
141 1 0.01
142 12 0.11
143 15 0.13
144 12 0.11
145 38 0.34
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (137 bp):
AGTGTAAGACATGACTGGGACATGCATCAGCATCGAGATGTAAGCCAGTGTAAGACATCTCTGGG
ACATGCATCCACTACGAGATGAGCCAGTGTAAGACCATGTTTAGGACATGGCATCAACATTATAG
AGGTGCC
Found at i:50477705 original size:46 final size:46
Alignment explanation
Indices: 50477655--50477830 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
50477645 TGGTTGAGCA
*
50477655 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
50477701 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
*
50477748 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
50477794 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50477831 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:50477811 original size:93 final size:93
Alignment explanation
Indices: 50477652--50477822 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
50477642 GGATGGTTGA
* *
50477652 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
*
50477717 TGAGTTCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
50477745 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
50477810 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
50477823 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:50483199 original size:46 final size:46
Alignment explanation
Indices: 50483142--50483317 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
50483132 TGGTTGAGCA
*
50483142 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * *** * * * *
50483188 TTCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATACGA-ACG
*
50483235 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* *
50483281 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50483318 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 72 0.68
47 34 0.32
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
Found at i:50483298 original size:93 final size:93
Alignment explanation
Indices: 50483139--50483309 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
50483129 GGATGGTTGA
* **
50483139 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTTCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCAAACTCGTTGAGT
50483204 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
50483232 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCAAACTCGTTGAGT
50483297 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
50483310 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:50497340 original size:27 final size:27
Alignment explanation
Indices: 50497310--50497460 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
50497300 TGTAGGGTAG
**
50497310 AATTACCAAAATACCCTTAGTTTACAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
50497337 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
50497364 AATTACCAAAATACCTTTGGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* * * *
50497391 AATTACCAAAACACCCCTAATTTGTGA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
50497418 AATTACCAAAATACCC-TCGACTTGTAA
1 AATTACCAAAATACCCTTAG-TTTGTAA
*
50497445 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
50497461 CTGATTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 104 0.99
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:50497475 original size:27 final size:27
Alignment explanation
Indices: 50497310--50497514 Score: 137
Period size: 27 Copynumber: 7.6 Consensus size: 27
50497300 TGTAGGGTAG
*
50497310 AATTACCAAAATA-CCCTTAGTTTACAA
1 AATTACCAAAATACCCCTGA-TTTACAA
* **
50497337 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTACAA
** * **
50497364 AATTACCAAAATACCTTTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTACAA
* * ***
50497391 AATTACCAAAACACCCCTAATTTGTGA
1 AATTACCAAAATACCCCTGATTTACAA
* **
50497418 AATTACCAAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCT-GATTTACAA
* *
50497445 AATTACCAAAGTACCCCTGATTTACAG
1 AATTACCAAAATACCCCTGATTTACAA
****
50497472 AATTACCGTTTTA-CCCTCGATTTACAA
1 AATTACCAAAATACCCCT-GATTTACAA
**
50497499 AATTATTAAAATACCC
1 AATTACCAAAATACCC
50497515 TTGTAGGGTA
Statistics
Matches: 141, Mismatches: 32, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
26 8 0.06
27 123 0.87
28 10 0.07
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTACAA
Found at i:50497476 original size:81 final size:81
Alignment explanation
Indices: 50497308--50497478 Score: 191
Period size: 81 Copynumber: 2.1 Consensus size: 81
50497298 CCTGTAGGGT
* * * **
50497308 AGAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
1 AGAATTACCAAAACACCCCTAATTTACAAAATTACCAAAATACCCCTGACTTGTAAAATTACCAA
** * **
50497373 AATACCTTTGGTTTGT
66 AATACCCCTGATTTAC
* ***
50497389 AAAATTACCAAAACACCCCTAATTTGTGAAATTACCAAAATA-CCCTCGACTTGTAAAATTACCA
1 AGAATTACCAAAACACCCCTAATTTACAAAATTACCAAAATACCCCT-GACTTGTAAAATTACCA
*
50497453 AAGTACCCCTGATTTAC
65 AAATACCCCTGATTTAC
50497470 AGAATTACC
1 AGAATTACC
50497479 GTTTTACCCT
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
80 4 0.05
81 69 0.95
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (81 bp):
AGAATTACCAAAACACCCCTAATTTACAAAATTACCAAAATACCCCTGACTTGTAAAATTACCAA
AATACCCCTGATTTAC
Found at i:50497529 original size:27 final size:27
Alignment explanation
Indices: 50497507--50497774 Score: 274
Period size: 27 Copynumber: 9.9 Consensus size: 27
50497497 AAAATTATTA
*
50497507 AAATACCCTTGTAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTACTG
* * *
50497534 AAATA-TCTCTATAGGGTAGAATTACTA
1 AAATACCCT-TGTAGGGTAGAATTACTG
50497561 AAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACTG
* *
50497588 AAATACTCC-TGTAGCGTAGAGTTACTG
1 AAATAC-CCTTGTAGGGTAGAATTACTG
* *
50497615 AAATA-CCTCTGTAGGGTAAAAGTACTG
1 AAATACCCT-TGTAGGGTAGAATTACTG
* *
50497642 AAATACCCCTGTAGGGTAGAAGTACTG
1 AAATACCCTTGTAGGGTAGAATTACTG
* **
50497669 AAATACCCCTGTAGGGTAGAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACTG
* * * *
50497696 AAATACCTTTGTAGGGTAAAAATACCG
1 AAATACCCTTGTAGGGTAGAATTACTG
* *
50497723 AAATACTCC-TGTAAGGTAGAATTACCG
1 AAATAC-CCTTGTAGGGTAGAATTACTG
* * *
50497750 AGATACCCTTGTGGGGTAAAATTAC
1 AAATACCCTTGTAGGGTAGAATTAC
50497775 CATTTTGCCC
Statistics
Matches: 202, Mismatches: 31, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
25 2 0.01
26 4 0.02
27 189 0.94
28 7 0.03
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACTG
Found at i:50498215 original size:22 final size:22
Alignment explanation
Indices: 50498163--50498227 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
50498153 GCCAATTATT
*
50498163 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
* *
50498185 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
50498207 CTGATTATGGCTTTATGCCAA
1 CTGATTATGGCTTTGTGCCAA
50498228 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:50498616 original size:25 final size:25
Alignment explanation
Indices: 50498569--50498617 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
50498559 TTTGATTTTG
* * *
50498569 ATTCTGTTACCTGATACTGATTCTA
1 ATTCTGTCACCTAATACTAATTCTA
*
50498594 ATTCTGTCACCTAATTCTAATTCT
1 ATTCTGTCACCTAATACTAATTCT
50498618 GATTTTGATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.24, C:0.22, G:0.08, T:0.45
Consensus pattern (25 bp):
ATTCTGTCACCTAATACTAATTCTA
Found at i:50498620 original size:37 final size:37
Alignment explanation
Indices: 50498579--50498657 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
50498569 ATTCTGTTAC
*
50498579 CTGATACTGATTCTAATTCTGTCACCTAATTCTAATT
1 CTGATACTGATTATAATTCTGTCACCTAATTCTAATT
** * * *
50498616 CTGATTTTGATTATGATTCTGTCACCTGATTCTGATT
1 CTGATACTGATTATAATTCTGTCACCTAATTCTAATT
50498653 CTGAT
1 CTGAT
50498658 TGTCATTTTG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.46
Consensus pattern (37 bp):
CTGATACTGATTATAATTCTGTCACCTAATTCTAATT
Found at i:50498651 original size:19 final size:19
Alignment explanation
Indices: 50498585--50498655 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 19
50498575 TTACCTGATA
50498585 CTGATTCTAATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
* *
50498604 CTAATTCTAATTCTG--ATT
1 CTGATTCTAATTCTGTCA-C
* * *
50498622 TTGATTATGATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
*
50498641 CTGATTCTGATTCTG
1 CTGATTCTAATTCTG
50498656 ATTGTCATTT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
17 1 0.03
18 11 0.28
19 27 0.68
20 1 0.03
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.46
Consensus pattern (19 bp):
CTGATTCTAATTCTGTCAC
Found at i:50498658 original size:37 final size:37
Alignment explanation
Indices: 50498594--50498672 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
50498584 ACTGATTCTA
* *
50498594 ATTCTGTCACCTAATTCTAATTCTGATTTTGATTATG
1 ATTCTGTCACCTAATTCTAATTCTGATTGTCATTATG
* * *
50498631 ATTCTGTCACCTGATTCTGATTCTGATTGTCATTTTG
1 ATTCTGTCACCTAATTCTAATTCTGATTGTCATTATG
50498668 ATTCT
1 ATTCT
50498673 AGTTCTGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (37 bp):
ATTCTGTCACCTAATTCTAATTCTGATTGTCATTATG
Found at i:50504165 original size:40 final size:40
Alignment explanation
Indices: 50504110--50504250 Score: 194
Period size: 40 Copynumber: 3.5 Consensus size: 40
50504100 TATTCGGATG
*
50504110 ATATCCAGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
50504150 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
50504190 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
50504230 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50504251 ATACTTGGGT
Statistics
Matches: 88, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 13 0.15
40 75 0.85
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:50511386 original size:15 final size:14
Alignment explanation
Indices: 50511366--50511399 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
50511356 CCACCTTCTA
50511366 AAAATCTAAATTTTG
1 AAAATC-AAATTTTG
*
50511381 AAAATCGAATTTTG
1 AAAATCAAATTTTG
50511395 AAAAT
1 AAAAT
50511400 TGAGTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.50, C:0.06, G:0.09, T:0.35
Consensus pattern (14 bp):
AAAATCAAATTTTG
Found at i:50512437 original size:27 final size:26
Alignment explanation
Indices: 50512407--50512491 Score: 107
Period size: 27 Copynumber: 3.2 Consensus size: 26
50512397 AGCATTGCTG
*
50512407 CCAGAACAGATAAGTGTGGTAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
50512434 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
50512461 CCAGATCTGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
50512488 CCAG
1 CCAG
50512492 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.96
28 1 0.02
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:50513945 original size:24 final size:24
Alignment explanation
Indices: 50513910--50514010 Score: 166
Period size: 24 Copynumber: 4.2 Consensus size: 24
50513900 CCAACACCAT
* *
50513910 TCTCCCTAATCAGCTCCTGAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
50513934 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
50513958 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
50513982 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
50514006 TCTCC
1 TCTCC
50514011 TGACAACCTT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 73 1.00
ACGTcount: A:0.20, C:0.43, G:0.05, T:0.33
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:50516634 original size:33 final size:32
Alignment explanation
Indices: 50516590--50516662 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 32
50516580 AAAGAAGATG
50516590 TTAAAAATGGATATGTCTACTAAGTTATTAGA
1 TTAAAAATGGATATGTCTACTAAGTTATTAGA
* *
50516622 TTAAAAGATGGATATGTCTGCTAAGTTATTGGA
1 TTAAAA-ATGGATATGTCTACTAAGTTATTAGA
50516655 TTGAAAAA
1 TT-AAAAA
50516663 ATAGTCTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
32 6 0.16
33 27 0.73
34 4 0.11
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.36
Consensus pattern (32 bp):
TTAAAAATGGATATGTCTACTAAGTTATTAGA
Found at i:50517717 original size:27 final size:27
Alignment explanation
Indices: 50517679--50517980 Score: 399
Period size: 27 Copynumber: 11.2 Consensus size: 27
50517669 TTAGCTTACC
*
50517679 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
50517706 AAATCACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50517733 AAATCACCAAAATACCCCTGGTTTGT-
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
50517759 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50517786 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * * * *
50517813 AAATTATTAATATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50517840 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
50517867 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
50517894 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50517921 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
50517948 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
50517975 AAATTA
1 AAATTA
50517981 TTGAAATACC
Statistics
Matches: 237, Mismatches: 37, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 22 0.09
27 215 0.91
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:50517748 original size:54 final size:54
Alignment explanation
Indices: 50517679--50518102 Score: 426
Period size: 54 Copynumber: 7.9 Consensus size: 54
50517669 TTAGCTTACC
* *
50517679 AAATTACCAAAATACCCCT-AGTTTGTAAAATCACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
50517733 AAATCACCAAAATACCCCTGGTTTGT-AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
** * *
50517786 AAATTACCAAAATACCCCTGATTTGTAAAATTATTAATATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
50517840 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
50517894 AAATTATCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *** * *** *
50517948 AAATTACCAAAATACCCCTGATTTGTGAAATTATTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
*** * * * *
50518002 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCGAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *** ** *
50518056 GAATTACTATTTTA-CCCTCGATTTACAAAATTACCGAAATACCCTTG
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTTG
50518103 TAGGGTAGAA
Statistics
Matches: 312, Mismatches: 53, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
53 53 0.17
54 258 0.83
55 1 0.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:50517987 original size:27 final size:27
Alignment explanation
Indices: 50517679--50518062 Score: 368
Period size: 27 Copynumber: 14.3 Consensus size: 27
50517669 TTAGCTTACC
50517679 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* * * * *
50517706 AAATCACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
* *
50517733 AAATCACCAAAATACCCCTGGTTTGT-
1 AAATTACCAAAATACCCCTGATTTGTA
* * **
50517759 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
50517786 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
** * * *
50517813 AAATTATTAATATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-CTGATTTGTA
50517840 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
50517867 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
50517894 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
50517921 AAATTACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
50517948 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
*** **
50517975 AAATTATTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
50518002 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * * *
50518029 AAATTACCGAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
*
50518056 GAATTAC
1 AAATTAC
50518063 TATTTTACCC
Statistics
Matches: 304, Mismatches: 45, Indels: 16
0.83 0.12 0.04
Matches are distributed among these distances:
26 28 0.09
27 270 0.89
28 6 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:50518120 original size:27 final size:26
Alignment explanation
Indices: 50518084--50518313 Score: 246
Period size: 27 Copynumber: 8.5 Consensus size: 26
50518074 CGATTTACAA
*
50518084 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
*
50518111 AAATATCGAAATACCCCTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
**
50518138 AATTACTGAAATATTCCTGTAGGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
*
50518165 AATTACCGCAATACCCCTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
* *
50518192 AATTACTGCAATACCCCTATAGGGTAG
1 AATTAC-GAAATACCCCTGTAGGGTAG
* *
50518219 AATTATCGCAATA-CCCTGTAGGGTAC
1 AATTA-CGAAATACCCCTGTAGGGTAG
*
50518245 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTA-CGAAATACCCCTGTAGGGTAG
* * *
50518272 AATTACTAAAATATCCCTGTAGGGTGG
1 AATTAC-GAAATACCCCTGTAGGGTAG
*
50518299 AATTACCGAGATACC
1 AATTA-CGAAATACC
50518314 TTATGGGGTA
Statistics
Matches: 173, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
26 25 0.14
27 145 0.84
28 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (26 bp):
AATTACGAAATACCCCTGTAGGGTAG
Found at i:50518142 original size:54 final size:54
Alignment explanation
Indices: 50518084--50518313 Score: 286
Period size: 54 Copynumber: 4.3 Consensus size: 54
50518074 CGATTTACAA
*
50518084 AATTACCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * * *
50518138 AATTACTGAAATATTCC-TGTAGGGTAGAATTACCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATA-CCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * * * * *
50518192 AATTACTGCAATACCCCTATAGGGTAGAATTATCGCAATA-CCCTGTAGGGTAC
1 AATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * *
50518245 AATTACCGAAATACCCTTGTAGGGTAGAATTA-CTAAAATATCCCTGTAGGGTGG
1 AATTACCGAAATACCCTTGTAGGGTAGAATTATC-GAAATACCCCTGTAGGGTAG
*
50518299 AATTACCGAGATACC
1 AATTACCGAAATACC
50518314 TTATGGGGTA
Statistics
Matches: 153, Mismatches: 19, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
52 1 0.01
53 46 0.30
54 104 0.68
55 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.26
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
Found at i:50518313 original size:80 final size:79
Alignment explanation
Indices: 50518082--50518331 Score: 304
Period size: 80 Copynumber: 3.1 Consensus size: 79
50518072 CTCGATTTAC
* *
50518082 AAAATTACCGAAATACCCTTGTAGGGTAGAAATA-TCGAAATACCCCTGTAGGGTAGAATTACTG
1 AAAATTACCGAAATACCCTTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAGAATTACCG
*
50518146 AAATATTCCTGTAGGGT
65 -AATA-CCCTGTAGGGT
* * * * * *
50518163 AGAATTACCGCAATACCCCTGTAGGGTAGAATTACTGCAATACCCCTATAGGGTAGAATTATCGC
1 AAAATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCG-
50518228 AATACCCTGTAGGGT
65 AATACCCTGTAGGGT
* * * *
50518243 ACAATTACCGAAATACCCTTGTAGGGTAGAATTACTAAAATATCCCTGTAGGGTGGAATTACCGA
1 AAAATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGA
* * *
50518308 GATACCTTATGGGGT
66 -ATACCCTGTAGGGT
50518323 AAAATTACC
1 AAAATTACC
50518332 ATTTTGCCCC
Statistics
Matches: 144, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 84 0.58
81 58 0.40
82 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (79 bp):
AAAATTACCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCGA
ATACCCTGTAGGGT
Found at i:50520168 original size:104 final size:104
Alignment explanation
Indices: 50519988--50520254 Score: 464
Period size: 104 Copynumber: 2.6 Consensus size: 104
50519978 TTGTATATAA
** *
50519988 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
50520052 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
50520092 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
50520157 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
50520196 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
50520255 ATAACGGTTA
Statistics
Matches: 155, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
104 154 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:50527692 original size:102 final size:103
Alignment explanation
Indices: 50527463--50527727 Score: 444
Period size: 102 Copynumber: 2.6 Consensus size: 103
50527453 TTGTATATAA
** *
50527463 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
50527527 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAA-GTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
50527567 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
50527632 TGAAA-TGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAAGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
50527669 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
50527728 ATAACGGTTA
Statistics
Matches: 153, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
102 88 0.58
104 64 0.42
105 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAAGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:50529161 original size:27 final size:27
Alignment explanation
Indices: 50529131--50529232 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
50529121 ATTCTCTTAA
* *
50529131 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
*
50529158 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTATGCCAC-AATATCTGTTTCTG
* * *
50529185 GTGGCTCTGCCATAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGTTTCTG
* * * *
50529212 GTGACTCTGTCACAAAATCTG
1 GTGGCTATGCCACAATATCTG
50529233 ATAACTGAGT
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.79
28 6 0.10
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGTTTCTG
Found at i:50529407 original size:6 final size:6
Alignment explanation
Indices: 50529392--50529479 Score: 72
Period size: 6 Copynumber: 14.3 Consensus size: 6
50529382 ATTCTGTTAC
* * * *
50529392 CTGATA CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTGACT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* *
50529441 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CT
50529480 AGTTCTAATA
Statistics
Matches: 65, Mismatches: 11, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
5 3 0.05
6 55 0.85
7 5 0.08
8 2 0.03
ACGTcount: A:0.19, C:0.20, G:0.15, T:0.45
Consensus pattern (6 bp):
CTGATT
Found at i:50529420 original size:31 final size:31
Alignment explanation
Indices: 50529382--50529479 Score: 151
Period size: 31 Copynumber: 3.2 Consensus size: 31
50529372 CTGATTTTTT
*
50529382 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
*
50529413 ATTCTGTTACCTGATACTGATTCTGACTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
* * *
50529444 ATTCTGTCACCTAATTCTGATTCTGATTCTG
1 ATTCTGTTACCTGATACTGATTCTGATTCTG
50529475 ATTCT
1 ATTCT
50529480 AGTTCTAATA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.46
Consensus pattern (31 bp):
ATTCTGTTACCTGATACTGATTCTGATTCTG
Found at i:50531451 original size:27 final size:27
Alignment explanation
Indices: 50531421--50531734 Score: 414
Period size: 27 Copynumber: 11.6 Consensus size: 27
50531411 TTAGTTTACC
50531421 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
50531448 AAATCACTAAAAT-CCCCTTGGTTTATA
1 AAATTACCAAAATACCCC-TGGTTTGTA
*
50531475 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
50531502 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50531529 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * ** *
50531556 AATTTACTAAAATACCCTTTTTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50531583 AAATTACAAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
50531610 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
50531637 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50531664 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
50531691 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50531718 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
50531735 TCGACCTATA
Statistics
Matches: 250, Mismatches: 35, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 4 0.02
27 242 0.97
28 4 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:50531747 original size:54 final size:54
Alignment explanation
Indices: 50531421--50531806 Score: 368
Period size: 54 Copynumber: 7.1 Consensus size: 54
50531411 TTAGTTTACC
* * * * * *
50531421 AAATTACCAAAATACCCCTGGTTTGTAAAATCACTAAAATCCCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGATTTATA
* * * *
50531475 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCT-TAGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGA-TTTATA
* * ***
50531529 AAATTACCAAAATACCCCTGATTTGTAAATTTACTAAAATACCCTTTTTTTATA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGATTTATA
* * * *
50531583 AAATTACAAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTC-GATTTATA
* * *
50531637 AAATTATCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTCGA-TTTATA
* * **
50531691 AAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATACCCTCGACCTATA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGATTTATA
*** * * * * * *
50531745 AAATTATTGAAATA-CCCTCGACTTGTAAACTTACCAAAGTACCATTGATTTACA
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTCGATTTATA
*
50531799 GAATTACC
1 AAATTACC
50531807 GTTTTAACCT
Statistics
Matches: 275, Mismatches: 49, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
53 4 0.01
54 267 0.97
55 4 0.01
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTCGATTTATA
Found at i:50531771 original size:81 final size:79
Alignment explanation
Indices: 50531421--50531787 Score: 310
Period size: 81 Copynumber: 4.5 Consensus size: 79
50531411 TTAGTTTACC
* * * * * * * *
50531421 AAATTACCAAAATACCCCTGGTTTGTAAAATCACTAAAAT-CCCCTTGGTTTATAAAATCACCAA
1 AAATTACAAAAATACCCC-GATTTGTAAAATTACCAAAATACCCC-TGATTTGT-AAATTACTAA
* *
50531485 AATACCC-CTGGTTTGTA
63 AATACCCTCT-ATTTATA
* ** **
50531502 AAATTACCAAAATACCCTTAGTTTACAAAATTACCAAAATACCCCTGATTTGTAAATTTACTAAA
1 AAATTACAAAAATACCCCGA-TTTGTAAAATTACCAAAATACCCCTGATTTGTAAA-TTACTAAA
* *
50531567 ATACCCTTTTTTTATA
64 ATACCCTCTATTTATA
* *
50531583 AAATTACAAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCAA
1 AAATTACAAAAATACCCC-GATTTGTAAAATTACCAAAATACCCCTGATTTGT-AAATTACT-AA
*
50531647 AATACCC-CTAGTTTGTA
63 AATACCCTCTA-TTTATA
* *
50531664 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTAAA
1 AAATTACAAAAATACCCCGA-TTTGTAAAATTACCAAAATACCCCTGATTTGT-AAATTACTAAA
* **
50531729 ATACCCTCGACCTATA
64 ATACCCTCTATTTATA
*** * * *
50531745 AAATTATTGAAATACCCTCGACTTGTAAACTTACCAAAGTACC
1 AAATTACAAAAATACCC-CGATTTGTAAAATTACCAAAATACC
50531788 ATTGATTTAC
Statistics
Matches: 234, Mismatches: 40, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
80 5 0.02
81 216 0.92
82 13 0.06
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (79 bp):
AAATTACAAAAATACCCCGATTTGTAAAATTACCAAAATACCCCTGATTTGTAAATTACTAAAAT
ACCCTCTATTTATA
Found at i:50531773 original size:27 final size:27
Alignment explanation
Indices: 50531421--50531787 Score: 153
Period size: 27 Copynumber: 13.6 Consensus size: 27
50531411 TTAGTTTACC
* **
50531421 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GACTTGTA
* * * ** *
50531448 AAATCACTAAAATCCCCTTGGTTTATA
1 AAATTACTAAAATACCCTCGACTTGTA
* * **
50531475 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GACTTGTA
* * *
50531502 AAATTACCAAAATACCCT-TAGTT-TACA
1 AAATTACTAAAATACCCTCGACTTGT--A
* *
50531529 AAATTACCAAAATACCC-CTGATTTGTA
1 AAATTACTAAAATACCCTC-GACTTGTA
* **** *
50531556 AATTTACTAAAATACCCTTTTTTTATA
1 AAATTACTAAAATACCCTCGACTTGTA
* **
50531583 AAATTACAAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GACTTGTA
* **
50531610 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACTAAAATACCCTC-GACTTGTA
* *
50531637 AAATTA-TCAAAATACCC-CTAGTTTGTA
1 AAATTACT-AAAATACCCTCGA-CTTGTA
* * *
50531664 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACTAAAATACCCTCGA-CTTGTA
* * *
50531691 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTAAAATACCCTC-GACTTGTA
* *
50531718 AAATTACTAAAATACCCTCGACCTATA
1 AAATTACTAAAATACCCTCGACTTGTA
* *
50531745 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGACTTGTA
* * *
50531772 AACTTACCAAAGTACC
1 AAATTACTAAAATACC
50531788 ATTGATTTAC
Statistics
Matches: 277, Mismatches: 48, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.00
26 2 0.01
27 268 0.97
28 5 0.02
29 1 0.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGACTTGTA
Found at i:50531865 original size:27 final size:27
Alignment explanation
Indices: 50531827--50531949 Score: 158
Period size: 27 Copynumber: 4.6 Consensus size: 27
50531817 CGATTTACAA
* *
50531827 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
50531854 AAATACCGAAATACCCTTGTAGGGAAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50531881 AATTACCGAAATACCCCTGTAGTGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50531908 AATTATCGTAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
50531935 AATTACC-ACAATACC
1 AATTACCGA-AATACC
50531950 TGTAACACCC
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 83 1.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:50532759 original size:37 final size:37
Alignment explanation
Indices: 50532709--50532787 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
50532699 TTATTACGAA
* * *
50532709 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
50532746 GTCTTACCCGGACAAAATCCCCACACGTAGTCATTGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50532783 GTCTT
1 GTCTT
50532788 TTGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50532982 original size:25 final size:25
Alignment explanation
Indices: 50532954--50533029 Score: 70
Period size: 25 Copynumber: 3.2 Consensus size: 25
50532944 CACTCGGCCT
50532954 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
50532979 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
50533001 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
50533026 ATCA
1 ATCA
50533030 TATCGGCTAT
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
22 11 0.31
23 5 0.14
24 5 0.14
25 15 0.42
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:50533022 original size:47 final size:47
Alignment explanation
Indices: 50532905--50533251 Score: 561
Period size: 47 Copynumber: 7.4 Consensus size: 47
50532895 CCCTTCGGGA
* * * * * *
50532905 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50532952 C-TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50532998 CTTATCACATATATACACTTTCACATTCATCATATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50533045 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50533092 CTTATCACATTATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACA-TATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50533140 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50533187 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50533234 CTTATCACATATATACAC
1 CTTATCACATATATACAC
50533252 ATCACAATTA
Statistics
Matches: 282, Mismatches: 16, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
46 42 0.15
47 195 0.69
48 45 0.16
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50533159 original size:142 final size:141
Alignment explanation
Indices: 50532905--50533251 Score: 615
Period size: 142 Copynumber: 2.5 Consensus size: 141
50532895 CCCTTCGGGA
* * * * * *
50532905 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCC-TATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
50532969 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCATATC
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
50533034 GGCTATTAGGC
131 GGCTATTAGGC
50533045 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-TATATACA
50533110 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
65 CTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACAT
50533175 CGGCTATTAGGC
130 CGGCTATTAGGC
50533187 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
50533252 ATCACAATTA
Statistics
Matches: 198, Mismatches: 7, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
140 42 0.21
141 16 0.08
142 140 0.71
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCTATTAGGC
Found at i:50533235 original size:189 final size:187
Alignment explanation
Indices: 50532905--50533251 Score: 604
Period size: 189 Copynumber: 1.8 Consensus size: 187
50532895 CCCTTCGGGA
*
50532905 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCTATCACATATATACACT
1 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCTATCACATATATACACT
* * *
50532970 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCATATCG
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
*
50533035 GCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50533092 CTTATCACATTATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 CTTATCACATT-TATACACTTTCACATCCATCACATTGGCCACTCGGCC-TATCACATATATACA
*
50533157 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
64 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
50533222 CGGCCATTAGGCCTTATCACATATATACAC
129 CGGCCATTAGGCCTTATCACATATATACAC
50533252 ATCACAATTA
Statistics
Matches: 150, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
187 11 0.07
188 34 0.23
189 105 0.70
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (187 bp):
CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50538020 original size:40 final size:40
Alignment explanation
Indices: 50537931--50538198 Score: 391
Period size: 40 Copynumber: 6.8 Consensus size: 40
50537921 CCAGCATGAT
* * * *
50537931 TGCTCTTCGAGACCTAGCCCGGATATA-AACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
50537970 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
50538010 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
50538050 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
50538090 TGCTCTTCGAAACTTAGCCC-GATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
50538129 TGC-CTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
50538168 TGCTCTTCGGGAC-TAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
50538199 CTCAATTCTC
Statistics
Matches: 206, Mismatches: 20, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
38 13 0.06
39 81 0.39
40 112 0.54
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:50539442 original size:35 final size:35
Alignment explanation
Indices: 50539396--50539472 Score: 102
Period size: 34 Copynumber: 2.2 Consensus size: 35
50539386 TAATTACGAA
* *
50539396 GTCTTACCCGGACATAATCTCCACACGAAGT-TCGG
1 GTCTTACCCGGA-AAAATCCCCACACGAAGTATCGG
*
50539431 GTCTTACCCGGAAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGAAAAATCCCCACACGAAGT-ATCGG
50539467 GTCTTA
1 GTCTTA
50539473 GAGCTCGGAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
34 15 0.41
35 12 0.32
36 10 0.27
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (35 bp):
GTCTTACCCGGAAAAATCCCCACACGAAGTATCGG
Found at i:50539768 original size:46 final size:47
Alignment explanation
Indices: 50539588--50539895 Score: 388
Period size: 44 Copynumber: 6.7 Consensus size: 47
50539578 GCCCTTCGGA
* * * * * *
50539588 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50539635 CCTATCACATATATACAC-TTCACATTCATTCACAT--GCCATT-GGC
1 CTTATCACATATATACACTTTCACATTCA-TCACATCGGCCATTAGGC
*
50539679 CTTATCACATATATACAC-TTCACATTCATCACAGC-G-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50539723 CTTATCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50539769 CTTATCACATATATATACACTTTCACATTCATCACATTGG-CATT-CGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50539816 CTTATCACATA-CTACACTTTCACATTCATTCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCA-TCACATCGGCCATTAGGC
50539863 CTTATCACATATATACACTTTCACATTC-TCACA
1 CTTATCACATATATACACTTTCACATTCATCACA
50539896 AATAGGTAAG
Statistics
Matches: 233, Mismatches: 15, Indels: 27
0.85 0.05 0.10
Matches are distributed among these distances:
43 9 0.04
44 73 0.31
45 27 0.12
46 33 0.14
47 44 0.19
48 40 0.17
49 7 0.03
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50539864 original size:94 final size:93
Alignment explanation
Indices: 50539588--50539895 Score: 413
Period size: 92 Copynumber: 3.4 Consensus size: 93
50539578 GCCCTTCGGA
* * * * *
50539588 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGG-CATTC-GCCTTATCACATATATACAC
50539653 -TTCACATTCATTCACAT--GCCATT-GGC
64 TTTCACATTCATTCACATCGGCCATTAGGC
*
50539679 CTTATCACATATATACAC-TTCACATTCATCACA--GCGCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTG-GCATT-CGCCTTATCACATATATACAC
50539741 TTTCACATTCA--CACATCGGCCATTAGGC
64 TTTCACATTCATTCACATCGGCCATTAGGC
*
50539769 CTTATCACATATATATACACTTTCACATTCATCACATTGGCATTCGCCTTATCACATA-CTACAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCATTCGCCTTATCACATATATACAC
*
50539833 TTTCACATTCATTCACATCGGCTATTAGGC
64 TTTCACATTCATTCACATCGGCCATTAGGC
50539863 CTTATCACATATATACACTTTCACATTC-TCACA
1 CTTATCACATATATACACTTTCACATTCATCACA
50539896 AATAGGTAAG
Statistics
Matches: 195, Mismatches: 9, Indels: 26
0.85 0.04 0.11
Matches are distributed among these distances:
87 5 0.03
88 23 0.12
89 17 0.09
90 24 0.12
91 22 0.11
92 46 0.24
93 28 0.14
94 29 0.15
95 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (93 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCATTCGCCTTATCACATATATACACTT
TCACATTCATTCACATCGGCCATTAGGC
Found at i:50540668 original size:38 final size:37
Alignment explanation
Indices: 50540617--50540696 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 37
50540607 TTATTACGAA
* * *
50540617 GTCTTACCCGGACATAATCTCCACACGAAGTTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAG-TCATCGG
*
50540655 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50540692 GTCTT
1 GTCTT
50540697 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
37 11 0.29
38 27 0.71
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50540885 original size:46 final size:47
Alignment explanation
Indices: 50540815--50541154 Score: 483
Period size: 46 Copynumber: 7.5 Consensus size: 47
50540805 CCCTTCGGGA
* * * * * *
50540815 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50540862 CCTATCACATAT-TACACTTTCACATTCATCACAT-GGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50540907 CTTATCACATATATACAC-TTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50540953 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50540999 C--A-CACATATATACAC-TTCACATTCATCACAT---TCA-T-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50541037 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50541083 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50541130 CTTATCACATATATACACTATCACA
1 CTTATCACATATATACACTTTCACA
50541155 ATTATCCAAA
Statistics
Matches: 267, Mismatches: 13, Indels: 26
0.87 0.04 0.08
Matches are distributed among these distances:
38 3 0.01
39 3 0.01
40 1 0.00
41 13 0.05
42 32 0.12
43 13 0.05
44 3 0.01
45 37 0.14
46 99 0.37
47 63 0.24
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50541063 original size:84 final size:90
Alignment explanation
Indices: 50540817--50541154 Score: 433
Period size: 84 Copynumber: 3.7 Consensus size: 90
50540807 CTTCGGGACT
* * * * * *
50540817 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATAT-TACACTT
1 TATCACATATATACAC-TTCACATTCATCAC-AT-GCCATTAGGCCTTATCACATATATACACTT
50540881 TCACATTCATCACAT-GGCCATTAGGCC
63 TCACATTCATCACATCGGCCATTAGGCC
*
50540908 TTATCACATATATACACTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTT
1 -TATCACATATATACACTTCACATTCATCACAT--GCCATTAGGCCTTATCACATATATACACTT
50540973 TCACATTCATCACATCGGCCA-TAGGCC
63 TCACATTCATCACATCGGCCATTAGGCC
* *
50541000 -A-CACATATATACACTTCACATTCATCACAT-TCA-T-CGCCTTATCACATATATACACTTTCA
1 TATCACATATATACACTTCACATTCATCACATGCCATTAGGCCTTATCACATATATACACTTTCA
50541060 CATTCATCACATCGG-CATTAGGCC
66 CATTCATCACATCGGCCATTAGGCC
50541084 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 -TATCACATATATACAC-TTCACATTCATCACAT--GCCATTAGGCCTTATCACATATATACACT
*
50541149 ATCACA
62 TTCACA
50541155 ATTATCCAAA
Statistics
Matches: 220, Mismatches: 13, Indels: 25
0.85 0.05 0.10
Matches are distributed among these distances:
83 2 0.01
84 46 0.21
85 1 0.00
86 2 0.01
87 13 0.06
88 16 0.07
89 29 0.13
90 2 0.01
91 34 0.15
92 44 0.20
93 31 0.14
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.31
Consensus pattern (90 bp):
TATCACATATATACACTTCACATTCATCACATGCCATTAGGCCTTATCACATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCC
Found at i:50541083 original size:130 final size:136
Alignment explanation
Indices: 50540815--50541154 Score: 498
Period size: 130 Copynumber: 2.5 Consensus size: 136
50540805 CCCTTCGGGA
* * * * *
50540815 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATAT-TACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGG-CCTATCACATATATACAC
*
50540879 TTTCACATTCATCACATGGCCATTAGGCCTTATCACATATATACACTTCACATTCATCACATCGG
65 -TTCACATTCATCACAT-GCCATTACGCCTTATCACATATATACACTTCACATTCATCACATCGG
50540944 CTATTAGGC
128 CTATTAGGC
50540953 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TAGGCC-A-CACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTATCACATATATACACT
*
50541015 TCACATTCATCACAT-TCA-T-CGCCTTATCACATATATACACTTTCACATTCATCACATCGGC-
66 TCACATTCATCACATGCCATTACGCCTTATCACATATATACAC-TTCACATTCATCACATCGGCT
50541076 ATTAGGC
130 ATTAGGC
*
50541083 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCC-TATCACATATATACAC
50541148 TATCACA
65 T-TCACA
50541155 ATTATCCAAA
Statistics
Matches: 188, Mismatches: 7, Indels: 17
0.89 0.03 0.08
Matches are distributed among these distances:
130 68 0.36
131 27 0.14
132 2 0.01
133 1 0.01
134 37 0.20
135 11 0.06
136 2 0.01
137 3 0.02
138 37 0.20
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (136 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTATCACATATATACACT
TCACATTCATCACATGCCATTACGCCTTATCACATATATACACTTCACATTCATCACATCGGCTA
TTAGGC
Found at i:50544932 original size:40 final size:40
Alignment explanation
Indices: 50544900--50545171 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
50544890 CCAGCATGAT
* * * *
50544900 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
50544940 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
50544980 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
50545020 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
50545060 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
50545100 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
50545140 TGCTCTTCGGGACGTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
50545172 CTCAATTCTC
Statistics
Matches: 211, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 211 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:50546442 original size:36 final size:37
Alignment explanation
Indices: 50546382--50546459 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
50546372 TAATTACGAA
* * *
50546382 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50546419 GTCTTA-CCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50546455 GTCTT
1 GTCTT
50546460 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 31 0.84
37 6 0.16
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50546648 original size:47 final size:47
Alignment explanation
Indices: 50546577--50547196 Score: 1018
Period size: 47 Copynumber: 13.2 Consensus size: 47
50546567 CCCTTCGGGA
* * * * * *
50546577 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50546624 CCTATCACATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50546670 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50546717 CTTATCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50546763 CTTATCACATATATACACTTTCACATTCATCACATTGGCTATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50546810 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50546857 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50546904 CTTATCACATATATATACACTTTCACATTCATCACAT-GGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50546952 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50546998 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50547045 CTTATCACATATATATACACTTTCACATTCATCACAT-GGCCATTA-GC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50547092 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50547139 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50547186 CTTATAACATA
1 CTTATCACATA
50547197 AACACTCACA
Statistics
Matches: 544, Mismatches: 19, Indels: 20
0.93 0.03 0.03
Matches are distributed among these distances:
45 27 0.05
46 169 0.31
47 268 0.49
48 26 0.05
49 54 0.10
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50549714 original size:26 final size:27
Alignment explanation
Indices: 50549646--50549776 Score: 140
Period size: 27 Copynumber: 4.9 Consensus size: 27
50549636 GGGGTGTTAC
* * *
50549646 AATACCCCTGTGGGGTAGAATTATCGC
1 AATACCCCTGTAGGGTAGAATTACCGA
*
50549673 AATACCCCTGTAGGGTACAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
**
50549700 AATA-CCCTGTAGGGTAGAATTACTAA
1 AATACCCCTGTAGGGTAGAATTACCGA
* *
50549726 AATACCCCTATAGGGTGGAATTACCGA
1 AATACCCCTGTAGGGTAGAATTACCGA
* * * *
50549753 GATA-CCTTGTGGGGTAAAATTACC
1 AATACCCCTGTAGGGTAGAATTACC
50549777 ATTTTGCCCC
Statistics
Matches: 86, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
26 38 0.44
27 48 0.56
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAGAATTACCGA
Found at i:50549715 original size:53 final size:53
Alignment explanation
Indices: 50549646--50549775 Score: 154
Period size: 53 Copynumber: 2.4 Consensus size: 53
50549636 GGGGTGTTAC
** *
50549646 AATACCCCTGTGGGGTAGAATTA-TCGCAATACCCCTGTAGGGTACAATTACCGA
1 AATA-CCCTGTGGGGTAGAATTACT-AAAATACCCCTATAGGGTACAATTACCGA
* **
50549700 AATACCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTGGAATTACCGA
1 AATACCCTGTGGGGTAGAATTACTAAAATACCCCTATAGGGTACAATTACCGA
* * *
50549753 GATACCTTGTGGGGTAAAATTAC
1 AATACCCTGTGGGGTAGAATTAC
50549776 CATTTTGCCC
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
53 60 0.92
54 5 0.08
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (53 bp):
AATACCCTGTGGGGTAGAATTACTAAAATACCCCTATAGGGTACAATTACCGA
Found at i:50550255 original size:22 final size:22
Alignment explanation
Indices: 50550203--50550267 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
50550193 TTAAAGCCTT
* *
50550203 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTATGTGCCAAC
* *
50550225 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTATGTGCCAAC
50550247 CTGATTATGGCTATGTGCCAA
1 CTGATTATGGCTATGTGCCAA
50550268 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTATGTGCCAAC
Found at i:50550514 original size:27 final size:26
Alignment explanation
Indices: 50550448--50550527 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 26
50550438 CATTATCCGT
* *
50550448 TTCTGGTGGCTATGCCACAAATAACTG
1 TTCTGGTGGCTCTGCCA-AAATATCTG
*
50550475 TTCTGGTGGCTCTGCCATAATATCTG
1 TTCTGGTGGCTCTGCCAAAATATCTG
* * *
50550501 TATCTGGTGACTCTGTCACAATATCTG
1 T-TCTGGTGGCTCTGCCAAAATATCTG
50550528 ATAACTGAGC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 8 0.17
27 38 0.83
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCAAAATATCTG
Found at i:50550727 original size:6 final size:6
Alignment explanation
Indices: 50550664--50550777 Score: 56
Period size: 6 Copynumber: 18.3 Consensus size: 6
50550654 TTGCATTCAC
* * * * *
50550664 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTA ATTTTG ATTTTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
50550714 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
50550764 ATTCT- ATTTCTG AT
1 ATTCTG A-TTCTG AT
50550778 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 14, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
5 6 0.07
6 60 0.73
7 13 0.16
8 3 0.04
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:50550763 original size:31 final size:31
Alignment explanation
Indices: 50550664--50550768 Score: 138
Period size: 31 Copynumber: 3.4 Consensus size: 31
50550654 TTGCATTCAC
*
50550664 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* * *
50550696 ATTCTAATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
50550727 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
50550758 ATTCTGATTCT
1 ATTCTGATTCT
50550769 ATTTCTGATA
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
31 59 0.91
32 6 0.09
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:50552158 original size:30 final size:30
Alignment explanation
Indices: 50552122--50552186 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
50552112 ACCTTTAGTC
50552122 TAGTATGATTAGTAACATGTATATTTAACT
1 TAGTATGATTAGTAACATGTATATTTAACT
50552152 TAGTATGATTAGTAACATGTATATTTAACT
1 TAGTATGATTAGTAACATGTATATTTAACT
*
50552182 AAGTA
1 TAGTA
50552187 AGAGATTTGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.42
Consensus pattern (30 bp):
TAGTATGATTAGTAACATGTATATTTAACT
Found at i:50553821 original size:43 final size:43
Alignment explanation
Indices: 50553702--50553822 Score: 165
Period size: 44 Copynumber: 2.8 Consensus size: 43
50553692 CATAGGATTC
* *
50553702 CGATATGTGATT-CGTGTAAGACCACGTCTGGGACATTGGCAT
1 CGATATGTGATTACGTGTAAGACCACGTCTAGGACAGTGGCAT
* *
50553744 CGATATGTGATTTACGTGTAAGACC-CTATCTAGGATAGTGGCAT
1 CGATATGTGA-TTACGTGTAAGACCAC-GTCTAGGACAGTGGCAT
*
50553788 CGATATGTGATTACATGTAAGACCACGTCTAGGAC
1 CGATATGTGATTACGTGTAAGACCACGTCTAGGAC
50553823 GTTGGTGTTG
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
42 10 0.15
43 23 0.34
44 35 0.51
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
CGATATGTGATTACGTGTAAGACCACGTCTAGGACAGTGGCAT
Found at i:50555371 original size:47 final size:46
Alignment explanation
Indices: 50555310--50555437 Score: 152
Period size: 47 Copynumber: 2.7 Consensus size: 46
50555300 ACATCATGTA
* * * *
50555310 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTTCGT-CTCAAT-
1 GCCGATGCATGTCCCAGATATGTCTTACACTAGCTCTCATAATC--TG
*
50555356 GCCGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATAATCTG
1 GCCGATG-CATGTCCCAGATAT-GTCTTACACTAGCTCTCATAATCTG
*
50555404 GCCGATGCATGTCCCAGATATTTCTTACACTAGC
1 GCCGATGCATGTCCCAGATATGTCTTACACTAGC
50555438 ACACAAACAT
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
46 18 0.25
47 28 0.39
48 23 0.32
49 2 0.03
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGATATGTCTTACACTAGCTCTCATAATCTG
Found at i:50555433 original size:94 final size:92
Alignment explanation
Indices: 50555266--50555437 Score: 245
Period size: 94 Copynumber: 1.8 Consensus size: 92
50555256 CACGTTAAGT
* * *
50555266 CGATGCCATGTACCAGATATGGTCTTATACTGACACATCATGTAGCCGATGCATGTCCCAGACAT
1 CGATGCCATGTACCAGATATGGTCTTACACTGACACATAATCTAGCCGATGCATGTCCCAGACAT
50555331 GTCTTACACTAGCTTTCGTCTCAATGC
66 GTCTTACACTAGCTTTCGTCTCAATGC
* * * * *
50555358 CGATGCCATGTCCCAGATATGGTCTTACACTGGCTCTCATAATCTGGCCGATGCATGTCCCAGAT
1 CGATGCCATGTACCAGATATGGTCTTACACT-G-ACACATAATCTAGCCGATGCATGTCCCAGAC
*
50555423 ATTTCTTACACTAGC
64 ATGTCTTACACTAGC
50555438 ACACAAACAT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 29 0.42
93 1 0.01
94 39 0.57
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (92 bp):
CGATGCCATGTACCAGATATGGTCTTACACTGACACATAATCTAGCCGATGCATGTCCCAGACAT
GTCTTACACTAGCTTTCGTCTCAATGC
Found at i:50569592 original size:50 final size:47
Alignment explanation
Indices: 50569470--50569602 Score: 153
Period size: 47 Copynumber: 2.8 Consensus size: 47
50569460 AGGGTATAAT
*
50569470 GTCGATGCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGA-CTCCCACATCAA
* * *
50569517 GTCGATGCCATGTTCCAGACATGGTCTTACACTGACTCCCATGTATC-C
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCA--CATCAA
* *
50569565 GTGCCGATGCCATGTCCCAAACATGGTCTTATACTGAC
1 GT--CGATGCCATGTCCCAGACATGGTCTTACACTGAC
50569603 ACATCACGTA
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
47 37 0.50
48 3 0.04
49 3 0.04
50 31 0.42
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCACATCAA
Found at i:50576258 original size:17 final size:17
Alignment explanation
Indices: 50576236--50576276 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
50576226 TTCTAACGCC
50576236 AGCAATTTTACTAAACA
1 AGCAATTTTACTAAACA
50576253 AGCAATTTTACTAAACA
1 AGCAATTTTACTAAACA
*
50576270 AGTAATT
1 AGCAATT
50576277 CACACGAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (17 bp):
AGCAATTTTACTAAACA
Found at i:50582710 original size:15 final size:15
Alignment explanation
Indices: 50582687--50582721 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
50582677 TTTGGATTAC
* *
50582687 CATTGAGACCATGAT
1 CATTCAGACCAGGAT
50582702 CATTCAGACCAGGAT
1 CATTCAGACCAGGAT
50582717 CATTC
1 CATTC
50582722 CCTTCTCTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (15 bp):
CATTCAGACCAGGAT
Found at i:50585787 original size:37 final size:37
Alignment explanation
Indices: 50585737--50585815 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
50585727 TTATTACGAA
* * *
50585737 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
50585774 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
50585811 GTCTT
1 GTCTT
50585816 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:50586005 original size:47 final size:47
Alignment explanation
Indices: 50585934--50586236 Score: 480
Period size: 47 Copynumber: 6.4 Consensus size: 47
50585924 CCCTTCGGGA
* * * * * *
50585934 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
50585981 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50586028 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50586075 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50586122 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50586171 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50586218 CTTATCACATATATACACT
1 CTTATCACATATATACACT
50586237 CACATCACAA
Statistics
Matches: 240, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 196 0.82
49 44 0.18
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50586012 original size:25 final size:25
Alignment explanation
Indices: 50585984--50586062 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
50585974 ACTCGGCCCT
50585984 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
50586009 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
50586031 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
50586056 ATCACAT
1 ATCACAT
50586063 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:50586164 original size:96 final size:96
Alignment explanation
Indices: 50585934--50586232 Score: 489
Period size: 96 Copynumber: 3.2 Consensus size: 96
50585924 CCCTTCGGGA
* * * *
50585934 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
50585997 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
50586028 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
50586091 ACTTTCACATTCACCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
50586122 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
50586187 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
50586218 CTTATCACATATATA
1 CTTATCACATATATA
50586233 CACTCACATC
Statistics
Matches: 189, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.01
94 90 0.48
96 98 0.52
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50586190 original size:143 final size:141
Alignment explanation
Indices: 50585934--50586236 Score: 516
Period size: 143 Copynumber: 2.1 Consensus size: 141
50585924 CCCTTCGGGA
* * * * *
50585934 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCACCACATCGGCCACTAGGCCCTATCACATATATACAC
50585999 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
50586064 GGCCATTAGGC
131 GGCCATTAGGC
* * *
50586075 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCACCACATCGGCCACTAGGCCCTATCAC--ATATATAC
50586140 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
50586205 TCGGCCATTAGGC
129 TCGGCCATTAGGC
50586218 CTTATCACATATATACACT
1 CTTATCACATATATACACT
50586237 CACATCACAA
Statistics
Matches: 152, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 47 0.31
143 105 0.69
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATCCACCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:50589910 original size:37 final size:37
Alignment explanation
Indices: 50589809--50589911 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
50589799 CAAATAGTCC
* * *
50589809 CCACACGTAGTTATCGGGTCTTACCTGAACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50589846 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50589883 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
50589912 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:50590217 original size:48 final size:48
Alignment explanation
Indices: 50590052--50590572 Score: 808
Period size: 48 Copynumber: 11.0 Consensus size: 48
50590042 ATATACACAC
*
50590052 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCA-ATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
50590099 ATCTCAT-CATATTTCACA-TAGCCATTCGGATTTACCACATAT--AT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
50590143 ATATCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
50590191 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
50590239 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
50590287 ATCTCATACATATTT--CATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
50590333 ATCTCAT--ATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
50590379 ATCTCAAACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
50590427 ATCTCATACATATTCCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * **
50590475 ATCTCATAAATATTTTATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
50590523 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
50590571 AT
1 AT
50590573 TTATCTTGTA
Statistics
Matches: 433, Mismatches: 32, Indels: 17
0.90 0.07 0.04
Matches are distributed among these distances:
44 14 0.03
45 28 0.06
46 110 0.25
47 6 0.01
48 275 0.64
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:50590323 original size:188 final size:189
Alignment explanation
Indices: 50590052--50590572 Score: 825
Period size: 188 Copynumber: 2.8 Consensus size: 189
50590042 ATATACACAC
* * *
50590052 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCA-ATATACATATCTCAT-CATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
* * * *
50590115 CATAGCCATTCGGATTTACCACATATATATATCATACATATTTCATATTAGCCATTCGGCTTTAC
66 CTTAGCCATTCGGCTTTACCACATATATATATCATATATATTTCACATTAGCCATTCGGCTTTAC
* *
50590180 CACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
131 CACATATATATATCTCAAACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
50590239 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
*
50590304 -TTAGCCATTCGGCTTTACCACATATACATATC-TCATATATTTCACATTAGCCATTCGGCTTTA
66 CTTAGCCATTCGGCTTTACCACATATATATATCAT-ATATATTTCACATTAGCCATTCGGCTTTA
* *
50590367 CCACATATATATATCTCAAACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
130 CCACATATATATATCTCAAACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
50590427 ATCTCATACATATTCCACACTAGCCATTCGGCTTTACCACATATATATATCTCATAAATATTTTA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
* *
50590492 TGTTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
66 -CTTAGCCATTCGGCTTTACCACATAT--ATATATCATATATATTTCACATTAGCCATTCGGCTT
50590557 TACCACATATATATAT
128 TACCACATATATATAT
50590573 TTATCTTGTA
Statistics
Matches: 309, Mismatches: 17, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
187 38 0.12
188 188 0.61
189 9 0.03
190 25 0.08
192 48 0.16
193 1 0.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (189 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATATATCTCATACATATTTCA
CTTAGCCATTCGGCTTTACCACATATATATATCATATATATTTCACATTAGCCATTCGGCTTTAC
CACATATATATATCTCAAACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:50594281 original size:40 final size:39
Alignment explanation
Indices: 50594247--50594918 Score: 833
Period size: 40 Copynumber: 16.8 Consensus size: 39
50594237 CCAGCATGAT
* * * *
50594247 TGCTCTTCAGGACCTAGCCCGGATATAACACCAGCATGAA
1 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
** ** * *
50594287 TGCTCTTCGAGACTTAAACCTAATATAACTCTAGCACGAA
1 TGCTCTTCG-GACTTAGCCCGGATATATCACTAGCACGAA
* * *
50594327 TGCTCTTCGAGACTTAGCCCGGATATAACTCTAGCGCGAA
1 TGCTCTTCG-GACTTAGCCCGGATATATCACTAGCACGAA
*
50594367 TGCTCTTCGAGACTTAGCCCGGGTATATCACTAGCACGAA
1 TGCTCTTCG-GACTTAGCCCGGATATATCACTAGCACGAA
*
50594407 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACAAA
1 TGCTCTTCGG-ACTTAGCCCGGATATATCACTAGCACGAA
* * * *
50594447 TGCTCTTCGGGACTTAACCCTGATATAACTCTAGCACGAA
1 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
* * *
50594487 TTCTCTTCGAGACTTAGCCCGGATATAACTCTAGCACGAA
1 TGCTCTTCG-GACTTAGCCCGGATATATCACTAGCACGAA
* *
50594527 TGCTCTTTGCGACTTAGCCCGCG-TCTATCACTAGCACGAA
1 TGCTCTTCG-GACTTAGCCCG-GATATATCACTAGCACGAA
50594567 TGCTCTTCAGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
* * * * *
50594607 TACTCTTCGGGACCTAGCCCGGATATAACTCTAGCGCGAA
1 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
*
50594647 TGCTCTTCGAGACTTAGCCCGGGTATATCACTAGCACGAA
1 TGCTCTTCG-GACTTAGCCCGGATATATCACTAGCACGAA
* * *
50594687 TGCTCTTCGGGACTTAGCCCGGATATAACTCTAGCGCGAA
1 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
* *
50594727 TGCTCTTCGAGACTTAGCTCGGGTATATCACTAGCACGAA
1 TGCTCTTCG-GACTTAGCCCGGATATATCACTAGCACGAA
*
50594767 TGCTCTTCGGGACTTAGCCCAGATATATCACTAGCACGAA
1 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
50594807 TGCTCTTCGAGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCG-GACTTAGCCCGGATATATCACTAGCACGAA
50594847 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAA
* *
50594887 TGCTCTTCAAGACTTAGCCCGGGTATATCACT
1 TGCTCTTC-GGACTTAGCCCGGATATATCACT
50594919 CTCAATTCTC
Statistics
Matches: 556, Mismatches: 63, Indels: 26
0.86 0.10 0.04
Matches are distributed among these distances:
39 7 0.01
40 542 0.97
41 7 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (39 bp):
TGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:50596223 original size:37 final size:37
Alignment explanation
Indices: 50596122--50596224 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
50596112 CGAATAGTCC
* *
50596122 CCACACGTAGTTATCGGGTCTTACCCGAACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
50596159 CCACACGTAGTCATCGGGTCTTACCCGGATAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
50596196 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
50596225 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:50596423 original size:48 final size:48
Alignment explanation
Indices: 50596365--50596558 Score: 307
Period size: 48 Copynumber: 4.0 Consensus size: 48
50596355 ATATACACAC
* *
50596365 ATCTCCTACATATTTCACATTAGCCATTCGGCTTCACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
50596413 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
50596461 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
50596509 ATCTCATATATATTACACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
50596557 AT
1 AT
50596559 TTATCTTGTA
Statistics
Matches: 133, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 133 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:50600948 original size:42 final size:43
Alignment explanation
Indices: 50600842--50600958 Score: 139
Period size: 42 Copynumber: 2.7 Consensus size: 43
50600832 TACCAATACC
* * *
50600842 ATATCCCAGATATGGTCTTAAATGTAA-TCTCATATCGATGCCA
1 ATATCCCAGATATGGTCTTACACG-AAGTCTCACATCGATGCCA
* * * *
50600885 ATAGCCCAGCTATTGTCTTACACGAAGTCTCACATCGATG-CG
1 ATATCCCAGATATGGTCTTACACGAAGTCTCACATCGATGCCA
*
50600927 ATATCCCAGATATGGTCTTACACGTAGTCTCA
1 ATATCCCAGATATGGTCTTACACGAAGTCTCA
50600959 ATAACCCTAA
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 31 0.50
43 31 0.50
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (43 bp):
ATATCCCAGATATGGTCTTACACGAAGTCTCACATCGATGCCA
Found at i:50601291 original size:15 final size:16
Alignment explanation
Indices: 50601262--50601293 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
50601252 AATTCATTCC
50601262 AAAAATTACATTTTTG
1 AAAAATTACATTTTTG
50601278 AAAAATTACATTTTTG
1 AAAAATTACATTTTTG
50601294 CCCCCTAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (16 bp):
AAAAATTACATTTTTG
Found at i:50603827 original size:16 final size:16
Alignment explanation
Indices: 50603806--50603848 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
50603796 TTATTTATCG
50603806 AGCTTTGTGCCTAGCA
1 AGCTTTGTGCCTAGCA
50603822 AGCTTTGTGCCTAGCA
1 AGCTTTGTGCCTAGCA
50603838 AGCTTTGTGCC
1 AGCTTTGTGCC
50603849 AGTGTGTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.16, C:0.26, G:0.26, T:0.33
Consensus pattern (16 bp):
AGCTTTGTGCCTAGCA
Found at i:50604222 original size:111 final size:110
Alignment explanation
Indices: 50603923--50604240 Score: 358
Period size: 107 Copynumber: 2.9 Consensus size: 110
50603913 TGATGATCAT
* *
50603923 TTAGTAGGTACTATGTACCAGTGATATAGA-CAATAACGATGGCTTGAGATCC-AGCATATGTTG
1 TTAGTAGGTACTATGTACCGGTGATACAGATC-ATAACGATGGCTTGAGATCCTA-CATATGTTG
* * *
50603986 CGGATTCTCTGCAGCTTGTATGAGTAGTATCATGAGCCAAGGATTAA
64 CAGATTCTCTGCAGCTTGTGTGAGTAGCATCATGAGCCAAGGATTAA
* * * *
50604033 TTAGTAGGTAC-A--AACCGGTGATACAGATCATAATGATGGCTTGACATCCTACATATGTTGTA
1 TTAGTAGGTACTATGTACCGGTGATACAGATCATAACGATGGCTTGAGATCCTACATATGTTGCA
* ****
50604095 GATTCTCTGCAACTTGTGTGAGTAGCATCATGAGTGGGGGGATTAA
66 GATTCTCTGCAGCTTGTGTGAGTAGCATCATGAG-CCAAGGATTAA
* * * *
50604141 TTAGTAGTTACTATGTATCGGTGATACAGATCGTAACGATTGCTTGAGATCCTACATATGTTGCA
1 TTAGTAGGTACTATGTACCGGTGATACAGATCATAACGATGGCTTGAGATCCTACATATGTTGCA
* ** * * *
50604206 GATTCTTTATAGCTTGTGTCAGCAGCATCGTGAGC
66 GATTCTCTGCAGCTTGTGTGAGTAGCATCATGAGC
50604241 TGGTCAAAGT
Statistics
Matches: 172, Mismatches: 30, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
107 70 0.41
108 19 0.11
109 2 0.01
110 11 0.06
111 70 0.41
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (110 bp):
TTAGTAGGTACTATGTACCGGTGATACAGATCATAACGATGGCTTGAGATCCTACATATGTTGCA
GATTCTCTGCAGCTTGTGTGAGTAGCATCATGAGCCAAGGATTAA
Found at i:50605409 original size:24 final size:26
Alignment explanation
Indices: 50605365--50605413 Score: 75
Period size: 24 Copynumber: 1.9 Consensus size: 26
50605355 CAAGGTAAGT
50605365 TTGTATGTTAAATAAGCTTTAATATAA
1 TTGTATGTTAAAT-AGCTTTAATATAA
50605392 TTGTAT-TTAAAT-GCTTTAATAT
1 TTGTATGTTAAATAGCTTTAATAT
50605414 TTTATGAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 10 0.45
26 6 0.27
27 6 0.27
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (26 bp):
TTGTATGTTAAATAGCTTTAATATAA
Found at i:50607145 original size:28 final size:26
Alignment explanation
Indices: 50607090--50607202 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
50607080 AGCATGGCTG
* *
50607090 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
50607116 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
50607144 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
50607171 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
50607199 CCAG
1 CCAG
50607203 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
26 6 0.08
27 39 0.50
28 33 0.42
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:50607173 original size:55 final size:54
Alignment explanation
Indices: 50607090--50607202 Score: 165
Period size: 55 Copynumber: 2.1 Consensus size: 54
50607080 AGCATGGCTG
*
50607090 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCA
* * *
50607144 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
50607199 CCAG
1 CCAG
50607203 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 19 0.36
55 34 0.64
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
Found at i:50613515 original size:12 final size:12
Alignment explanation
Indices: 50613474--50613506 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
50613464 CTCGAGCCCT
50613474 TCCACGGCCACG
1 TCCACGGCCACG
50613486 TCCACGGCCACG
1 TCCACGGCCACG
50613498 TCCACGGCC
1 TCCACGGCC
50613507 TCTTCCACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.15, C:0.52, G:0.24, T:0.09
Consensus pattern (12 bp):
TCCACGGCCACG
Found at i:50614916 original size:28 final size:26
Alignment explanation
Indices: 50614861--50614973 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
50614851 AGCATGGCTG
* *
50614861 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
50614887 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
50614915 CCAGAATAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
50614942 CCAGATCAGATAATTTCTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
50614970 CCAG
1 CCAG
50614974 GACACTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 6 0.08
27 36 0.49
28 31 0.42
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:50614945 original size:55 final size:53
Alignment explanation
Indices: 50614861--50614973 Score: 138
Period size: 55 Copynumber: 2.1 Consensus size: 53
50614851 AGCATGGCTG
*
50614861 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTC-TGGCAGAGCCA
* ** *
50614915 CCAGAATAGATATATGTGGTAGAGCCACCAGATCAGATAATTTCTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAA-TTCTGGCAGAGCCA
50614970 CCAG
1 CCAG
50614974 GACACTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 18 0.35
55 31 0.61
56 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCTGGCAGAGCCA
Found at i:50616187 original size:15 final size:15
Alignment explanation
Indices: 50616167--50616201 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
50616157 TAATAGATGG
50616167 AAGGTGGTATAGAGT
1 AAGGTGGTATAGAGT
50616182 AAGGTGGTATAGAGT
1 AAGGTGGTATAGAGT
50616197 AAGGT
1 AAGGT
50616202 TGGTTCGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.40, T:0.26
Consensus pattern (15 bp):
AAGGTGGTATAGAGT
Found at i:50616497 original size:10 final size:10
Alignment explanation
Indices: 50616455--50616497 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
50616445 AAAAATGACC
*
50616455 AAAATTAATC
1 AAAATTAATT
50616465 AAAATTAATTAT
1 AAAATTAA-T-T
50616477 AAAATTAATT
1 AAAATTAATT
*
50616487 AAAATTCATT
1 AAAATTAATT
50616497 A
1 A
50616498 TATTAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 19 0.66
11 2 0.07
12 8 0.28
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (10 bp):
AAAATTAATT
Found at i:50616508 original size:22 final size:22
Alignment explanation
Indices: 50616455--50616499 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
50616445 AAAAATGACC
*
50616455 AAAATTAATCAAAATTAATTAT
1 AAAATTAATTAAAATTAATTAT
*
50616477 AAAATTAATTAAAATTCATTAT
1 AAAATTAATTAAAATTAATTAT
50616499 A
1 A
50616500 TTAATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAATTAATTAAAATTAATTAT
Found at i:50621908 original size:33 final size:33
Alignment explanation
Indices: 50621866--50621932 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
50621856 CTTAAACTTA
50621866 CCATTCCTTAACATTAAATCATTCAATCATACT
1 CCATTCCTTAACATTAAATCATTCAATCATACT
50621899 CCATTCCTTAACATTAAATCATTCAATCATACT
1 CCATTCCTTAACATTAAATCATTCAATCATACT
50621932 C
1 C
50621933 ATTATATCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.28, G:0.00, T:0.36
Consensus pattern (33 bp):
CCATTCCTTAACATTAAATCATTCAATCATACT
Found at i:50623337 original size:46 final size:48
Alignment explanation
Indices: 50623285--50623499 Score: 204
Period size: 46 Copynumber: 4.6 Consensus size: 48
50623275 TGAAATGTGT
** *
50623285 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGAT-GA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGATAGACAA
* * *
50623331 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGATAGACAA
* * * * * * * *
50623379 TCCAGTATAAGACATATCTGGGACATGCATCGGTATTGAGA-CGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGATAGACAA
* * * * *
50623425 GATAGTGTAAGACGTGTCTGGGACATGCATTAGCCTTGAGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGATAGACAA
* * *
50623473 GCTAGTGTAACACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
50623500 GCGTCAGCTT
Statistics
Matches: 131, Mismatches: 34, Indels: 6
0.77 0.20 0.04
Matches are distributed among these distances:
46 70 0.53
47 3 0.02
48 58 0.44
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGATAGACAA
Found at i:50623497 original size:94 final size:94
Alignment explanation
Indices: 50623285--50623499 Score: 304
Period size: 94 Copynumber: 2.3 Consensus size: 94
50623275 TGAAATGTGT
* * *
50623285 GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGATGAGAGCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGAGATAGTGTAAGACATGTCT
50623350 GGGACATGCATCAGCCTCGAGATATACAA
66 GGGACATGCATCAGCCTCGAGATATACAA
* * * * * *
50623379 TCCAGTATAAGACATATCTGGGACATGCATCGGTATTGAGACGAGAGATAGTGTAAGACGTGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGAGATAGTGTAAGACATGTCT
* *
50623444 GGGACATGCATTAGCCTTGAGATATACAA
66 GGGACATGCATCAGCCTCGAGATATACAA
* * *
50623473 GCTAGTGTAACACCTGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
50623500 GCGTCAGCTT
Statistics
Matches: 103, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
94 103 1.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGAGATAGTGTAAGACATGTCT
GGGACATGCATCAGCCTCGAGATATACAA
Found at i:50623581 original size:49 final size:49
Alignment explanation
Indices: 50623428--50623645 Score: 166
Period size: 49 Copynumber: 4.6 Consensus size: 49
50623418 GACGAGAGAT
* * * * * *
50623428 AGTGTAAGACGTGTCTGGGACAT-GCATTAGCCTTGAGATATACAAG-C
1 AGTGTAAAACCTGTCTGGGACATGGCATCAGCCTCGATATATAAAAGTC
* * * ****
50623475 TAGTGTAACACCTGTCTAGGACATGGCGTCAG-CT---TAT-TGTGCGTC
1 -AGTGTAAAACCTGTCTGGGACATGGCATCAGCCTCGATATATAAAAGTC
* * *
50623520 AGTGTAAGACCTGTCTGGGACATGGCATC-GACACT-GATATATGAGAGTC
1 AGTGTAAAACCTGTCTGGGACATGGCATCAG-C-CTCGATATATAAAAGTC
* *
50623569 AGTGTAAAACCTGTCTGGGACACGGCATCAGCCTCGATATATAAAAGTT
1 AGTGTAAAACCTGTCTGGGACATGGCATCAGCCTCGATATATAAAAGTC
* *
50623618 AGTGTAAAACCTGTTTGGAACATGGCAT
1 AGTGTAAAACCTGTCTGGGACATGGCAT
50623646 TGACTTTGGT
Statistics
Matches: 137, Mismatches: 23, Indels: 19
0.77 0.13 0.11
Matches are distributed among these distances:
43 1 0.01
44 28 0.20
45 3 0.02
46 2 0.01
48 27 0.20
49 75 0.55
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (49 bp):
AGTGTAAAACCTGTCTGGGACATGGCATCAGCCTCGATATATAAAAGTC
Found at i:50629294 original size:93 final size:93
Alignment explanation
Indices: 50629182--50629353 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
50629172 CGCCCATAAG
* *
50629182 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCAGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCACATCCATAAGTGAACTCAGACTCAACTC
50629246 AACCAGTTCGGATGCCTAGTTACATCTCA
65 AACCAGTTCGGATGCCTAGTTACATCTCA
* *
50629275 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
*
50629340 ACGAGTTCGGATGC
66 ACCAGTTCGGATGC
50629354 TCAGTCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
ACCAGTTCGGATGCCTAGTTACATCTCA
Found at i:50629348 original size:46 final size:46
Alignment explanation
Indices: 50629175--50629350 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
50629165 TGTAACCCGC
* * *
50629175 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCACAT
* * *
50629221 CCATAAGTGAACTCAGACTCAACTCAACCAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
*
50629271 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
50629314 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
50629351 TGCTCAGTCA
Statistics
Matches: 108, Mismatches: 12, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 4 0.04
46 59 0.55
47 27 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:50635237 original size:48 final size:47
Alignment explanation
Indices: 50635132--50635343 Score: 207
Period size: 46 Copynumber: 4.5 Consensus size: 47
50635122 TATGTGTGCA
*
50635132 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACTAT--AGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGA-TATAAAGCT
* * *
50635178 AGTGTAAGACATGTTTGGTACATGCATCAGTC-TCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCATCGAGATATA-AAGCT
* * ** ** *
50635226 AGTGTAAGACATATCTGAGACATGCATCGGCATTAAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATATAAAGCT
* * *
50635272 AGTGTAAGACGTGTCTGGGACATGCATCAGCCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATATA-AAGCT
* * *
50635320 AATGTAAAACCTGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
50635344 GCGTCATCTT
Statistics
Matches: 132, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
45 3 0.02
46 66 0.50
47 6 0.05
48 57 0.43
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATATAAAGCT
Found at i:50635342 original size:94 final size:94
Alignment explanation
Indices: 50635134--50635343 Score: 312
Period size: 94 Copynumber: 2.2 Consensus size: 94
50635124 TGTGTGCAAG
* * * * *
50635134 TGTAAGACATGTCTGGGACATGCATCGGCATTGAGACTATAGCTAGTGTAAGACATGTTTGGTAC
1 TGTAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGAGCTAGTGTAAGACATGTCTGGGAC
* *
50635199 ATGCATCAGTCTCGAGATATACAAGCTAG
66 ATGCATCAGCCTCGAGATATACAAGCTAA
* * *
50635228 TGTAAGACATATCTGAGACATGCATCGGCATTAAGACGAGAGCTAGTGTAAGACGTGTCTGGGAC
1 TGTAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGAGCTAGTGTAAGACATGTCTGGGAC
50635293 ATGCATCAGCCTCGAGATATACAAGCTAA
66 ATGCATCAGCCTCGAGATATACAAGCTAA
* *
50635322 TGTAAAACCTGTCTGGGACATG
1 TGTAAGACATGTCTGGGACATG
50635344 GCGTCATCTT
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 102 1.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (94 bp):
TGTAAGACATGTCTGGGACATGCATCGGCATTAAGACGAGAGCTAGTGTAAGACATGTCTGGGAC
ATGCATCAGCCTCGAGATATACAAGCTAA
Found at i:50635501 original size:49 final size:48
Alignment explanation
Indices: 50635272--50635535 Score: 184
Period size: 49 Copynumber: 5.5 Consensus size: 48
50635262 GACGAGAGCT
* * * * * *
50635272 AGTGTAAGACGTGTCTGGGACAT-GCATCAGCCTCGAGATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATAT-GAAGCC
* * * * * * * *
50635320 AATGTAAAACCTGTCTGGGACATGGCGTCATC-TTG-T-TGTG-TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATATGAAGCC
* * *
50635364 AGTGTAAGACCTTTCTGGGACATGGCATCAACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATATGA-AGCC
* * * * * *
50635413 AATGTAAGACCTGTTTAGGACACGGCAT-AAGCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAA-CATCGATATATG-AAGCC
* * *
50635462 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGATATACT--AGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATA-TGAAGCC
50635509 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
50635536 GTCGGCATCT
Statistics
Matches: 165, Mismatches: 40, Indels: 22
0.73 0.18 0.10
Matches are distributed among these distances:
44 28 0.17
45 1 0.01
46 3 0.02
47 16 0.10
48 39 0.24
49 75 0.45
50 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAACATCGATATATGAAGCC
Found at i:50638816 original size:26 final size:26
Alignment explanation
Indices: 50638771--50638867 Score: 126
Period size: 26 Copynumber: 3.8 Consensus size: 26
50638761 TTATCACCCT
50638771 AATTTTATCCCA-G-TAAAATTTTAAC
1 AATTTTA-CCCACGCTAAAATTTTAAC
50638796 AATTTTACCCACGCTAAAATTTTAAC
1 AATTTTACCCACGCTAAAATTTTAAC
* * *
50638822 GATTTTACCCACGCTAAAAATTTGAC
1 AATTTTACCCACGCTAAAATTTTAAC
* *
50638848 AATTTTACCCTCGATAAAAT
1 AATTTTACCCACGCTAAAAT
50638868 GTCGAGGGTA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
24 4 0.06
25 8 0.13
26 51 0.81
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (26 bp):
AATTTTACCCACGCTAAAATTTTAAC
Found at i:50638901 original size:15 final size:16
Alignment explanation
Indices: 50638881--50638913 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
50638871 GAGGGTAATC
*
50638881 ATTCAATATG-TCACA
1 ATTCAACATGTTCACA
50638896 ATTCAACATGTTCACA
1 ATTCAACATGTTCACA
50638912 AT
1 AT
50638914 GATTGTAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.33
Consensus pattern (16 bp):
ATTCAACATGTTCACA
Found at i:50640198 original size:48 final size:48
Alignment explanation
Indices: 50640140--50640231 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
50640130 GATTAACGAG
*
50640140 ATCCCATGTAAGACCATGTCTA-GGACATGGCATCGGCATCGATATGCT
1 ATCCCATGTAAGACCATATC-AGGGACATGGCATCGGCATCGATATGCT
* * * *
50640188 ATCCCGTGTAAGACCATATCAGGGATATGGCTTCGGCATTGATA
1 ATCCCATGTAAGACCATATCAGGGACATGGCATCGGCATCGATA
50640232 AGTTATTTCG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
47 1 0.03
48 37 0.97
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (48 bp):
ATCCCATGTAAGACCATATCAGGGACATGGCATCGGCATCGATATGCT
Found at i:50640314 original size:90 final size:89
Alignment explanation
Indices: 50640175--50640388 Score: 207
Period size: 90 Copynumber: 2.4 Consensus size: 89
50640165 CATGGCATCG
*** * * * * * * *
50640175 GCATCGATATGCTATCCCGTGTAAGACCATATCAGGGATATGGCTTCGGCATTGA-T-AAGTTAT
1 GCATCGATATGAGGTCCCGTGTAAGACCATGTCTGGGACATGACATCGGCACTGATTCAAG--AC
50640238 TTCGAATAAAACCATATCAAGGATAT
64 TTCGAATAAAACCATATCAAGGATAT
* *
50640264 AGCATCGATATGAGGTCCCGTATAAGACCATGTCTGGGGCATGACATCGGCACTGATTCAAGACT
1 -GCATCGATATGAGGTCCCGTGTAAGACCATGTCTGGGACATGACATCGGCACTGATTCAAGACT
* * **
50640329 TCGTATAAGACCATATCTGGGATAT
65 TCGAATAAAACCATATCAAGGATAT
* * *
50640354 GTCATCGATGTGTGGTCCCATGTAAGACCATGTCT
1 G-CATCGATATGAGGTCCCGTGTAAGACCATGTCT
50640389 AAGACATGGC
Statistics
Matches: 101, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
89 1 0.01
90 96 0.95
91 1 0.01
92 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (89 bp):
GCATCGATATGAGGTCCCGTGTAAGACCATGTCTGGGACATGACATCGGCACTGATTCAAGACTT
CGAATAAAACCATATCAAGGATAT
Found at i:50643178 original size:31 final size:31
Alignment explanation
Indices: 50643140--50643202 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
50643130 TTTAATTTTA
50643140 TATTATTATTACTTACTTATTTACTTTTTCC
1 TATTATTATTACTTACTTATTTACTTTTTCC
50643171 TATTATTATTACTTACTTATTTACTTTTTCC
1 TATTATTATTACTTACTTATTTACTTTTTCC
50643202 T
1 T
50643203 TCTCTTGGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.16, G:0.00, T:0.62
Consensus pattern (31 bp):
TATTATTATTACTTACTTATTTACTTTTTCC
Found at i:50660516 original size:31 final size:31
Alignment explanation
Indices: 50660479--50660594 Score: 160
Period size: 31 Copynumber: 3.7 Consensus size: 31
50660469 AGTGTACAAT
* *
50660479 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTAGTAGCTTCAGCTACCTGATCA
*
50660510 GTGAAAAGTAGTAGCTTCAGCTACCTGATTA
1 GTGAAAAGTAGTAGCTTCAGCTACCTGATCA
* *
50660541 GTGAAAAGTGGTAGCTCCAGCTACCTGATCA
1 GTGAAAAGTAGTAGCTTCAGCTACCTGATCA
* * *
50660572 GTGAATAGTAATAGCTTCGGCTA
1 GTGAAAAGTAGTAGCTTCAGCTA
50660595 TCGAATGTGA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTAGTAGCTTCAGCTACCTGATCA
Found at i:50660553 original size:62 final size:60
Alignment explanation
Indices: 50660476--50660623 Score: 190
Period size: 62 Copynumber: 2.4 Consensus size: 60
50660466 TTGAGTGTAC
*
50660476 AATGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTAGTAGCTTCAGCTACCTG
1 AATGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTAATAGCTTCAGCTACC-G
* * * * * *
50660537 ATTAGTGAAAAGTGGTAGCTCCAGCTACCTGATCAGTGAATAGTAATAGCTTCGGCTATCG
1 AAT-GTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTAATAGCTTCAGCTACCG
*
50660598 AATGTGAAAAG-GGATAGCTTTGGCTA
1 AATGTGAAAAGTGG-TAGCTTCGGCTA
50660624 TCGAATGTGA
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
59 2 0.03
60 17 0.23
61 5 0.07
62 50 0.68
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (60 bp):
AATGTGAAAAGTGGTAGCTTCGGCTACCTGATCAGTGAAAAGTAATAGCTTCAGCTACCG
Found at i:50660667 original size:29 final size:29
Alignment explanation
Indices: 50660582--50660654 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
50660572 GTGAATAGTA
50660582 ATAGCTTCGGCTATCGAATGTGAAAAGGG
1 ATAGCTTCGGCTATCGAATGTGAAAAGGG
*
50660611 ATAGCTTTGGCTATCGAATGTGAAAAGGG
1 ATAGCTTCGGCTATCGAATGTGAAAAGGG
50660640 ATAGCTTCGGCTATC
1 ATAGCTTCGGCTATC
50660655 AAATTTGGAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
ATAGCTTCGGCTATCGAATGTGAAAAGGG
Found at i:50660694 original size:33 final size:33
Alignment explanation
Indices: 50660657--50660855 Score: 272
Period size: 33 Copynumber: 6.0 Consensus size: 33
50660647 CGGCTATCAA
* *
50660657 ATTTGGAAAGGAAAGGTATACTTTGTGTATACT
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* **
50660690 ATTTGAAAATGTTAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
50660723 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
**
50660756 ATTTGAAAAGGTTAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* * * * *
50660789 ATATGAAAAGGGAAGGTATATTTTTTGTATATC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* *
50660822 ATATGAAAAGGAAAGGTATACTTTGTGTGTACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
50660855 A
1 A
50660856 CTCGGAAAGA
Statistics
Matches: 145, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 145 1.00
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.37
Consensus pattern (33 bp):
ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
Found at i:50675661 original size:41 final size:41
Alignment explanation
Indices: 50675590--50675673 Score: 109
Period size: 41 Copynumber: 2.0 Consensus size: 41
50675580 ATAGTGATAT
*
50675590 TCGGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATTAAA
1 TCGGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATAAAA
* *
50675631 TCGGGCTTT-ATGCCTAGCAAG-CTTATTGCTGGTGTATAAAA
1 TCGGGCTTTGA-GCCTAGCAAGCCTT-GTGCTGGTGAATAAAA
50675672 TC
1 TC
50675674 AAACCTTGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 4 0.11
41 34 0.89
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (41 bp):
TCGGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGAATAAAA
Found at i:50688545 original size:39 final size:38
Alignment explanation
Indices: 50688490--50688580 Score: 155
Period size: 39 Copynumber: 2.3 Consensus size: 38
50688480 TTTTTAAGAA
50688490 TAAAGTTTTTTTATAATTTTTATACTTCTTAATAATGT
1 TAAAGTTTTTTTATAATTTTTATACTTCTTAATAATGT
50688528 TAAAGTTTTTTTTATAATTTTTATACTTCTTAATAATGT
1 TAAAG-TTTTTTTATAATTTTTATACTTCTTAATAATGT
*
50688567 TAAAGATTTATTTA
1 TAAAG-TTTTTTTA
50688581 AAAAAATTTG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
38 5 0.10
39 45 0.90
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.57
Consensus pattern (38 bp):
TAAAGTTTTTTTATAATTTTTATACTTCTTAATAATGT
Found at i:50688725 original size:22 final size:20
Alignment explanation
Indices: 50688700--50688745 Score: 65
Period size: 22 Copynumber: 2.2 Consensus size: 20
50688690 AATAATTTGA
*
50688700 TAAAAAATATAAATTAAAAAAT
1 TAAAAAAGATAAA--AAAAAAT
50688722 TAAAAAAGATAAAAAAAAAT
1 TAAAAAAGATAAAAAAAAAT
50688742 TAAA
1 TAAA
50688746 TGAAAGCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.48
22 12 0.52
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (20 bp):
TAAAAAAGATAAAAAAAAAT
Found at i:50699347 original size:20 final size:20
Alignment explanation
Indices: 50699314--50699363 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
50699304 AAGAAATATA
*
50699314 TAAAAAGTACAATAAT-ATTT
1 TAAAAA-TAAAATAATAATTT
50699334 TCAAAAATAAAATAATAAATTT
1 T-AAAAATAAAATAAT-AATTT
50699356 TAAAAATA
1 TAAAAATA
50699364 TATAAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 9 0.35
21 12 0.46
22 5 0.19
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (20 bp):
TAAAAATAAAATAATAATTT
Found at i:50699373 original size:23 final size:22
Alignment explanation
Indices: 50699324--50699375 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
50699314 TAAAAAGTAC
*
50699324 AATAATATTTTCAAAAATAAAAT
1 AATAA-ATTTTCAAAAATAAAAA
50699347 AATAAATTTT-AAAAATATATAAA
1 AATAAATTTTCAAAAATA-A-AAA
50699370 AATAAA
1 AATAAA
50699376 AAAAATATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 7 0.27
22 6 0.23
23 13 0.50
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
AATAAATTTTCAAAAATAAAAA
Found at i:50699379 original size:19 final size:19
Alignment explanation
Indices: 50699357--50699416 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 19
50699347 AATAAATTTT
50699357 AAAAATATATAAAAATAAA
1 AAAAATATATAAAAATAAA
*
50699376 AAAAATATTATTGAGAAAA-AAT
1 AAAAATA-TA-T-A-AAAATAAA
*
50699398 AATAATATATAAAAATAAA
1 AAAAATATATAAAAATAAA
50699417 TATTTTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
18 4 0.12
19 10 0.30
20 3 0.09
21 3 0.09
22 9 0.27
23 4 0.12
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (19 bp):
AAAAATATATAAAAATAAA
Found at i:50699411 original size:16 final size:15
Alignment explanation
Indices: 50699392--50699440 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
50699382 ATTATTGAGA
50699392 AAAAATAATAATATAT
1 AAAAATAA-AATATAT
* *
50699408 AAAAATAAATATTTTT
1 AAAAATAAA-ATATAT
50699424 AAAAATAAAATA-AT
1 AAAAATAAAATATAT
50699438 AAA
1 AAA
50699441 GTTAAATCTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 4 0.14
15 3 0.11
16 21 0.75
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAAATAAAATATAT
Found at i:50699412 original size:34 final size:35
Alignment explanation
Indices: 50699357--50699440 Score: 98
Period size: 35 Copynumber: 2.3 Consensus size: 35
50699347 AATAAATTTT
* *
50699357 AAAAATATATAAAAATAAAAA-AAATATTATTGAGA
1 AAAAATA-ATAAAAATAAAAATAAATATTATTAAAA
* *
50699392 AAAAATAATAATATATAAAAATAAATATTTTTAAAA
1 AAAAATAATAA-AAATAAAAATAAATATTATTAAAA
50699428 ATAAAATAATAAA
1 A-AAAATAATAAA
50699441 GTTAAATCTC
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
34 4 0.10
35 15 0.36
36 13 0.31
37 10 0.24
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (35 bp):
AAAAATAATAAAAATAAAAATAAATATTATTAAAA
Done.