Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 159 of 325
Found at i:50953986 original size:28 final size:27
Alignment explanation
Indices: 50953954--50954086 Score: 74
Period size: 28 Copynumber: 5.2 Consensus size: 27
50953944 AACTGTGATC
50953954 ACGTGTGTAGTACTCAGTGCAGGCTACT
1 ACGTGTGTAGTACT-AGTGCAGGCTACT
* * *
50953982 ACGTGTATCAG-A-TGGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAGTGCAGGCTACT
50954004 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACT-AGTGCAGGCTACT
*** * *
50954032 ACGTGTACCGGA-TAAT-C-GG-T-C-
1 ACGTGTGTAGTACTAGTGCAGGCTACT
50954053 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACT-AGTGCAGGCTACT
50954081 ACGTGT
1 ACGTGT
50954087 ACCGGATAAT
Statistics
Matches: 74, Mismatches: 16, Indels: 30
0.62 0.13 0.25
Matches are distributed among these distances:
21 10 0.14
22 10 0.14
23 5 0.07
24 6 0.08
25 9 0.12
26 6 0.08
27 4 0.05
28 22 0.30
29 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (27 bp):
ACGTGTGTAGTACTAGTGCAGGCTACT
Found at i:50954068 original size:49 final size:49
Alignment explanation
Indices: 50953906--50954130 Score: 281
Period size: 49 Copynumber: 4.5 Consensus size: 49
50953896 TGAGGTCGCA
* * * *
50953906 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA-AAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATC-G-G-TCACG
* * * ** *
50953957 TGTGTAGTACTCAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGAT-AATCGGTCACG
50954007 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATCGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATCGGTCACG
* * *
50954056 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATCGGTCACG
*
50954105 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
50954131 TGCGTACTAG
Statistics
Matches: 153, Mismatches: 19, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
49 79 0.52
50 40 0.26
51 33 0.22
52 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATCGGTCACG
Found at i:50954087 original size:99 final size:100
Alignment explanation
Indices: 50953899--50954137 Score: 313
Period size: 99 Copynumber: 2.4 Consensus size: 100
50953889 TCTATTGTGA
* *
50953899 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
* * **
50953964 TACTCAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
50953999 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TCG-G-TCACGTGTGT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACT-GTGATCACGTGTGT
*
50954061 AGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
64 AGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
50954098 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTAC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTAC
50954138 TAGATAGCTT
Statistics
Matches: 121, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
98 35 0.29
99 42 0.35
100 2 0.02
101 42 0.35
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:50962226 original size:28 final size:28
Alignment explanation
Indices: 50962194--50962263 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
50962184 AATGAGATTG
*
50962194 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATAGTA-A
* *
50962222 GCACTAAATGTGCGAGTTTGACTAGTAA
1 GCACTAAGTGTGCGAGTTTGAATAGTAA
50962250 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
50962264 GACTTACTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 32 0.86
29 5 0.14
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATAGTAA
Found at i:50970046 original size:28 final size:28
Alignment explanation
Indices: 50969988--50970050 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
50969978 AATGAGATTG
* **
50969988 GCACTAAGTGTGCGAGTTTAATTGTATA
1 GCACTAAATGTGCGAGTTTAATACTATA
*
50970016 GCACTAAATGTGCGAGTTTGACTACTA-A
1 GCACTAAATGTGCGAGTTT-AATACTATA
50970044 GCACTAA
1 GCACTAA
50970051 GTGTACGGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 26 0.87
29 4 0.13
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (28 bp):
GCACTAAATGTGCGAGTTTAATACTATA
Found at i:50973549 original size:40 final size:40
Alignment explanation
Indices: 50973484--50973577 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
50973474 GACTATGTTC
* *
50973484 GGCACTAAGTGTTCGATTTGAAATAGCACCGGCAATAAATA
1 GGCACTAAGTGTGCGAATTGAAATAGCACCGGCAAT-AATA
* ** * *
50973525 -GCACTAAGTGTGCGAATTGGAATAGCTTCGGCTATATTA
1 GGCACTAAGTGTGCGAATTGAAATAGCACCGGCAATAATA
50973564 GGCACTAAGTGTGC
1 GGCACTAAGTGTGC
50973578 AATAACAAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.07
40 42 0.93
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (40 bp):
GGCACTAAGTGTGCGAATTGAAATAGCACCGGCAATAATA
Found at i:50986858 original size:40 final size:40
Alignment explanation
Indices: 50986779--50986946 Score: 223
Period size: 40 Copynumber: 4.2 Consensus size: 40
50986769 CGGATGATAA
* * * *
50986779 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * * *
50986819 CCGGGCTACGTCCCGAAAGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
50986859 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
50986899 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
50986939 CC-GGCTAA
1 CCGGGCTAA
50986947 ATCCCAAAGA
Statistics
Matches: 110, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
39 8 0.07
40 100 0.91
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:50987223 original size:22 final size:22
Alignment explanation
Indices: 50987183--50987224 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
50987173 GAATGTGCAT
*
50987183 ATATGATGTTATTCATTTAGCC
1 ATATGATGTTATACATTTAGCC
50987205 ATATGAATGTTATAC-TTTAG
1 ATATG-ATGTTATACATTTAG
50987225 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.45
Consensus pattern (22 bp):
ATATGATGTTATACATTTAGCC
Found at i:50994904 original size:40 final size:40
Alignment explanation
Indices: 50994849--50994989 Score: 185
Period size: 40 Copynumber: 3.5 Consensus size: 40
50994839 TATTCGGATG
50994849 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
50994889 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
50994929 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGACTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
50994969 ATAT-CTGGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
50994990 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 14 0.16
40 73 0.84
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:51005533 original size:40 final size:40
Alignment explanation
Indices: 51005470--51005713 Score: 330
Period size: 40 Copynumber: 6.1 Consensus size: 40
51005460 CGGATGATAA
* * * *
51005470 CCGGGCTAAGTCCAGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
51005510 CCGGGCTAAGTCCCGAAGCCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51005550 CCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51005590 CCGGGTTAAGTTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51005630 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
51005670 CCAGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
51005710 CCGG
1 CCGG
51005714 TTAACTCCCA
Statistics
Matches: 184, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.02
40 181 0.98
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51010619 original size:79 final size:79
Alignment explanation
Indices: 51010484--51010656 Score: 195
Period size: 79 Copynumber: 2.2 Consensus size: 79
51010474 ACCCAAGTTT
* * * * * * *
51010484 CTTCGGAATTTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGC
1 CTTCGGGACTTAGCCGGATAAAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATAAAAGC
*
51010548 AACTCGCACAAATGC
66 -ACTAGCACAAATGC
* * * * * *
51010563 CTTCGGGTCTTAGCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC
1 CTTCGGGACTTAGCCGGATAAAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATAAAAGC
*
51010628 ACTAGCATAAATGC
66 ACTAGCACAAATGC
51010642 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
51010657 CAGATATCAT
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
79 74 0.96
80 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATAAAACCACAAGCACAAATGCCTTCGGGACTTAACCCGGATAAAAGC
ACTAGCACAAATGC
Found at i:51010631 original size:40 final size:40
Alignment explanation
Indices: 51010557--51010662 Score: 187
Period size: 40 Copynumber: 2.7 Consensus size: 40
51010547 CAACTCGCAC
*
51010557 AAATGCCTTCGGGTCTTAG-CCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
51010596 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
1 AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
*
51010636 AAATGCCTTCGGGACTTAGCCCAGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
51010663 TCATTCAAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 18 0.28
40 46 0.72
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCAT
Found at i:51016929 original size:40 final size:40
Alignment explanation
Indices: 51016866--51017123 Score: 326
Period size: 40 Copynumber: 6.5 Consensus size: 40
51016856 CGGATGATAA
* * *
51016866 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
51016906 CCGGGCTAAGTCCCAAAGCCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51016946 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51016986 CCGGG-TCAAGTCCCGAAGGTATTTGTGTGAGTTACTATAT
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51017026 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
51017066 CCGGGCTATGTCTCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
51017106 CC-GGTTAACTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
51017124 TACTTGGCTT
Statistics
Matches: 193, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 16 0.08
40 176 0.91
41 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51020909 original size:55 final size:54
Alignment explanation
Indices: 51020842--51021045 Score: 220
Period size: 55 Copynumber: 3.8 Consensus size: 54
51020832 ATTAGGGTTT
* * *
51020842 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATATCACGTAAGACCATGTCAAGGCATGGCAA-TGGTAAGGTTTCTAAGGC
* * * * * * * *
51020897 AAGGAAATCATGTAATACCATGTCAAGGCATGGCATTGGTGAGTTTTATTACGGC
1 AAGGATATCACGTAAGACCATGTCAAGGCATGGCAATGGTAAGGTTT-CTAAGGC
*
51020952 AAGGATATCACGTAAGACCATGTCAAGACATGGCAATGGTAA-GTTTC-AA---
1 AAGGATATCACGTAAGACCATGTCAAGGCATGGCAATGGTAAGGTTTCTAAGGC
* * *
51021001 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAGGT
1 AAGGATATCACGTAAGACCATGTCAAGGCATGGCAATGGTAAGGT
51021046 ACCCGCGTAT
Statistics
Matches: 126, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
49 39 0.31
50 2 0.02
52 1 0.01
54 12 0.10
55 72 0.57
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATATCACGTAAGACCATGTCAAGGCATGGCAATGGTAAGGTTTCTAAGGC
Found at i:51027826 original size:53 final size:52
Alignment explanation
Indices: 51027698--51027897 Score: 210
Period size: 53 Copynumber: 3.8 Consensus size: 52
51027688 ATTAGGGTTT
* *
51027698 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATATCATGTAAGACCATGTCAAGGCATGGC-ATTGGTAA-G-TTCTAAGGC
* * *
51027753 AAGGAAATCATGTAATACCATGTCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATATCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTC-TAAGGC
* * *
51027806 AAGGATATCATGTAAGACCATGTCAAGACATAGCAATGGTAAGTT-TCAA---
1 AAGGATATCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTCT-AAGGC
* * * * *
51027855 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATATCATGTAAGACCATGTCAAGGCATGGCATTGGTAAG
51027898 GTACCCGCGT
Statistics
Matches: 127, Mismatches: 16, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
49 38 0.30
51 1 0.01
52 5 0.04
53 46 0.36
54 7 0.06
55 30 0.24
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (52 bp):
AAGGATATCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTCTAAGGC
Found at i:51031782 original size:40 final size:40
Alignment explanation
Indices: 51031630--51031841 Score: 241
Period size: 40 Copynumber: 5.3 Consensus size: 40
51031620 CATTTGAATG
* * *
51031630 ATATCCGGGCTAAGTCCCGAAAGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * *
51031670 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
51031710 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
51031750 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * * * ** *
51031790 ATACCCAGGTTAAGACCCGAAGGCAATTGTCCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
51031830 ATATCC-GGCTAA
1 ATATCCGGGCTAA
51031842 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 7 0.05
40 142 0.93
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:51034685 original size:27 final size:27
Alignment explanation
Indices: 51034644--51034747 Score: 104
Period size: 27 Copynumber: 3.9 Consensus size: 27
51034634 GGAGGAAGCG
*
51034644 TCTGGTGGCTATGCCACAATTATCTAA
1 TCTGGTGGCTCTGCCACAATTATCTAA
**
51034671 TCTGGTGGCTCTGCCACATATT-TCTGT
1 TCTGGTGGCTCTGCCACA-ATTATCTAA
* * *
51034698 TCTGGTGGCTTTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAATTATCT-AA
* *
51034726 TCTGGTGACTCTGTCAC-ATTAT
1 TCTGGTGGCTCTGCCACAATTAT
51034748 TTGTTCTGGC
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
26 3 0.05
27 44 0.69
28 17 0.27
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAATTATCTAA
Found at i:51034753 original size:54 final size:54
Alignment explanation
Indices: 51034644--51034756 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 54
51034634 GGAGGAAGCG
*
51034644 TCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATTTCTGT
1 TCTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTGCCACATATTTCTGT
* * * *
51034698 TCTGGTGGCTTTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATT-TGT
1 TCTGGTGGCTATGCCACAATTATCT-AATCTGGTGACTCTGCCACATAT-TTCTGT
51034752 TCTGG
1 TCTGG
51034757 CAGTCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
54 32 0.62
55 20 0.38
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (54 bp):
TCTGGTGGCTATGCCACAATTATCTAATCTGGTGACTCTGCCACATATTTCTGT
Found at i:51042529 original size:27 final size:27
Alignment explanation
Indices: 51042489--51042601 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
51042479 AGGAAGCGTC
*
51042489 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
51042516 CTGGTGGCTCTGCCACATATT-TATGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* * *
51042543 CTGGTGGCTCTACCACGATTATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
* * *
51042571 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
51042597 CTGGT
1 CTGGT
51042602 AGCCATGCTG
Statistics
Matches: 70, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
26 9 0.13
27 44 0.63
28 17 0.24
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:51042597 original size:54 final size:54
Alignment explanation
Indices: 51042489--51042601 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
51042479 AGGAAGCGTC
* * *
51042489 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTATGTT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATATGTT
* * * * *
51042543 CTGGTGGCTCTACCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATACCACAATTATCT-GATCTGGTGACTCTGCCACATATATATGTT
51042597 CTGGT
1 CTGGT
51042602 AGCCATGCTG
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATATGTT
Found at i:51053390 original size:39 final size:43
Alignment explanation
Indices: 51053301--51053398 Score: 125
Period size: 39 Copynumber: 2.3 Consensus size: 43
51053291 AAATATTTCT
**
51053301 GCACACTTAGTGCCATCTTAAATAGCCGAGACTAAGTTGGTATC
1 GCACACTTAGTGCCATC-TAAATAGCCGAGACTAAGTTGAAATC
51053345 GCACACTTAGTGCC-TC-AAATAGCCGA-AGCT-AGTT-AAATC
1 GCACACTTAGTGCCATCTAAATAGCCGAGA-CTAAGTTGAAATC
51053384 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
51053399 AAGCTAGTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
39 17 0.34
40 5 0.10
41 12 0.24
43 2 0.04
44 14 0.28
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (43 bp):
GCACACTTAGTGCCATCTAAATAGCCGAGACTAAGTTGAAATC
Found at i:51053413 original size:30 final size:30
Alignment explanation
Indices: 51053370--51053452 Score: 159
Period size: 30 Copynumber: 2.8 Consensus size: 30
51053360 CAAATAGCCG
51053370 AAGCTAG-TTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
51053399 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
51053429 AAGCTAGTTTAAATCGCACACTTA
1 AAGCTAGTTTAAATCGCACACTTA
51053453 ACATCATATT
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
29 7 0.13
30 46 0.87
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.27
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:51057671 original size:46 final size:46
Alignment explanation
Indices: 51057601--51057823 Score: 168
Period size: 46 Copynumber: 4.7 Consensus size: 46
51057591 TTATTTGTGT
* * *
51057601 GCCAGTGTAAGA-CATGTCTAGGACATACATCAGCCTCGAGATGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATC-GCCTCGAAATGTAA
*
51057647 GCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACGAAATGT--
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGCCT-CGAAATGTAA
* * * * *
51057691 GTCAGTGTAAGACCATGTCTGAGACATGGCATCGGCATGGATATGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATC-GCCTCGAAATGT-A-A
* * * * *
51057741 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCAACCTCG-ATTTTGATA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATC-GCCTCGAAATGT-A-A
* *
51057790 GTCAGCGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCG
51057824 ATGAGCTAGT
Statistics
Matches: 142, Mismatches: 27, Indels: 14
0.78 0.15 0.08
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 47 0.33
47 2 0.01
49 34 0.24
50 32 0.23
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATCGCCTCGAAATGTAA
Found at i:51057756 original size:50 final size:49
Alignment explanation
Indices: 51057691--51057824 Score: 162
Period size: 49 Copynumber: 2.7 Consensus size: 49
51057681 TACGAAATGT
* * *
51057691 GTCAGTGTAAGACCATGTCTGAGACATGGCATCGGCATGGATATGTGAGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAT-TGTGAGA
* * * * *
51057741 G-CTAGTGTAAGACCATGTCTGGGACATGGCGTCAACCTCGATTTTGATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATTGTGAGA
*
51057790 GTCAGCGTAAGACCATGTCTGGGACATGGCATCGA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGA
51057825 TGAGCTAGTG
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
49 36 0.51
50 35 0.49
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (49 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATTGTGAGA
Found at i:51058408 original size:22 final size:22
Alignment explanation
Indices: 51058380--51058424 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
51058370 CTAATGAGTC
51058380 TAGTTTCATATAGAAGAAACAA
1 TAGTTTCATATAGAAGAAACAA
51058402 TAGTTTCATATAGAAGAAACAA
1 TAGTTTCATATAGAAGAAACAA
51058424 T
1 T
51058425 GTAAGCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.09, G:0.13, T:0.29
Consensus pattern (22 bp):
TAGTTTCATATAGAAGAAACAA
Found at i:51067095 original size:27 final size:27
Alignment explanation
Indices: 51066958--51067134 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 27
51066948 ATATTAAGTC
* * * * *
51066958 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCAACATAGTCAATT
* * * *
51066985 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCAACATAGTCAATT
* *
51067012 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCAACATAGTC-AATT
* *
51067040 CGCACACTTAGTGTC-GCATGGTCAATT
1 CGCACACTTAGTG-CAACATAGTCAATT
* * * *
51067067 CGCACACTTGGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAATT
*
51067094 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCAACATAGTCAATT
51067121 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51067135 TGTACAATTT
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
26 1 0.01
27 103 0.81
28 22 0.17
29 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAATT
Found at i:51075010 original size:27 final size:27
Alignment explanation
Indices: 51074993--51075170 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
51074983 ATATTAAGTC
51074993 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* ** *
51075020 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
51075047 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* *** ** *
51075075 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
51075102 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
51075129 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
51075156 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
51075171 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:51075132 original size:82 final size:81
Alignment explanation
Indices: 51075014--51075169 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51075004 TGCTATATAA
* *
51075014 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51075079 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51075096 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51075160 CACTTAGTGC
65 CACTTAGTGC
51075170 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51075153 original size:54 final size:54
Alignment explanation
Indices: 51074993--51075169 Score: 205
Period size: 54 Copynumber: 3.3 Consensus size: 54
51074983 ATATTAAGTC
* * * *
51074993 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
51075047 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* **
51075102 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
51075156 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51075170 TGTACAATTT
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
52 1 0.01
54 57 0.55
55 45 0.43
56 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:51082725 original size:9 final size:9
Alignment explanation
Indices: 51082711--51082736 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
51082701 CTTAACAACC
51082711 AGTGTTGGG
1 AGTGTTGGG
51082720 AGTGTTGGG
1 AGTGTTGGG
51082729 AGTGTTGG
1 AGTGTTGG
51082737 AAGCCCCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.54, T:0.35
Consensus pattern (9 bp):
AGTGTTGGG
Found at i:51097634 original size:47 final size:47
Alignment explanation
Indices: 51097583--51097820 Score: 377
Period size: 47 Copynumber: 5.1 Consensus size: 47
51097573 TTCCACGTTT
* **
51097583 ATCACATTAGCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
51097630 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
51097677 ATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
51097724 GTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * **
51097771 ATCACATTGGCCATTAGGCCTTATCTCATATATACACATTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
51097818 ATC
1 ATC
51097821 TCATAAAATC
Statistics
Matches: 178, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 178 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
Found at i:51097657 original size:22 final size:22
Alignment explanation
Indices: 51097630--51097705 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
51097620 GTTCACATTC
51097630 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
51097652 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
51097676 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
51097699 ATCACAT
1 ATCACAT
51097706 ATATGCATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 13 0.32
23 11 0.27
24 11 0.27
25 6 0.15
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:51097776 original size:25 final size:25
Alignment explanation
Indices: 51097605--51097682 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
51097595 ATTCTACCTT
51097605 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
51097630 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
51097652 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
51097677 ATCACA
1 ATCACA
51097683 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:51101420 original size:29 final size:29
Alignment explanation
Indices: 51101331--51101474 Score: 159
Period size: 28 Copynumber: 5.1 Consensus size: 29
51101321 CACATACCTG
* * *
51101331 TATAAGGCCCACTAGGCCC-AATCTCATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
51101359 CATATGGCCCATTAAGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
*
51101387 TATGTGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* ** *
51101416 TATGTGGCCCATTAAACCCAAACCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
51101445 CATATGG-CCATTAGGCCCAAATCATATT
1 TATATGGCCCATTAGGCCCAAATCACATT
51101473 TA
1 TA
51101475 CAATCATGCT
Statistics
Matches: 97, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 57 0.59
29 40 0.41
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.26
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:51101436 original size:57 final size:58
Alignment explanation
Indices: 51101336--51101474 Score: 176
Period size: 57 Copynumber: 2.4 Consensus size: 58
51101326 ACCTGTATAA
* * * * * * *
51101336 GGCCCACTAGGCCC-AATCTCATTCATATGGCCCATTAAGCCC-AATCACATTTATGT
1 GGCCCATTAGGCCCAAATCACATTTATATGGCCCATTAAACCCAAACCACATTCATAT
*
51101392 GGCCCATTAGGCCCAAATCACATTTATGTGGCCCATTAAACCCAAACCACATTCATAT
1 GGCCCATTAGGCCCAAATCACATTTATATGGCCCATTAAACCCAAACCACATTCATAT
*
51101450 GG-CCATTAGGCCCAAATCATATTTA
1 GGCCCATTAGGCCCAAATCACATTTA
51101475 CAATCATGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
56 13 0.18
57 46 0.64
58 13 0.18
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (58 bp):
GGCCCATTAGGCCCAAATCACATTTATATGGCCCATTAAACCCAAACCACATTCATAT
Found at i:51104571 original size:8 final size:8
Alignment explanation
Indices: 51104560--51104587 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
51104550 ATTTTCAGCT
51104560 TTTCGACA
1 TTTCGACA
51104568 TTTCGACA
1 TTTCGACA
51104576 TTTCGACA
1 TTTCGACA
51104584 TTTC
1 TTTC
51104588 AGCTTTTCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43
Consensus pattern (8 bp):
TTTCGACA
Found at i:51104595 original size:16 final size:16
Alignment explanation
Indices: 51104552--51104597 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
51104542 GTAGCCAAAT
51104552 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
51104568 TTTC-GACATTTCGACA
1 TTTCAG-CTTTTCGACA
51104584 TTTCAGCTTTTCGA
1 TTTCAGCTTTTCGA
51104598 GATCTGCTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 1 0.04
16 24 0.92
17 1 0.04
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:51108728 original size:26 final size:25
Alignment explanation
Indices: 51108699--51108749 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
51108689 ACTTTTGTTA
51108699 AGGGACT-TTTGATGAAAATGTGAAAT
1 AGGGACTATTTG-TG-AAATGTGAAAT
51108725 AGGGACTAATTTGTGAAATGTGAAA
1 AGGGACT-ATTTGTGAAATGTGAAA
51108750 ATTTTGAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 17 0.74
27 2 0.09
28 4 0.17
ACGTcount: A:0.39, C:0.04, G:0.27, T:0.29
Consensus pattern (25 bp):
AGGGACTATTTGTGAAATGTGAAAT
Found at i:51109293 original size:42 final size:41
Alignment explanation
Indices: 51109244--51109360 Score: 119
Period size: 42 Copynumber: 2.8 Consensus size: 41
51109234 ACCGAGATTC
* *
51109244 CATATAAGACCATATCTGGGATATGGCATCGGTATG-TGATTT
1 CATATAAGACCATATC-GGGATATGGCATCGATATGAT-AGTT
** * *
51109286 TGTATAAGACCATGTCAGGGACATGGCATCGATATGATAGTT
1 CATATAAGACCATATC-GGGATATGGCATCGATATGATAGTT
* * *
51109328 CATGTAAGACCATATCCGGATATGGCATTGATA
1 CATATAAGACCATATCGGGATATGGCATCGATA
51109361 CGGTACTAAG
Statistics
Matches: 60, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
41 14 0.23
42 45 0.75
43 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (41 bp):
CATATAAGACCATATCGGGATATGGCATCGATATGATAGTT
Found at i:51114754 original size:20 final size:21
Alignment explanation
Indices: 51114729--51114768 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
51114719 CCCTTGAAAT
*
51114729 AGGGC-ACAAGCCCGTGTGGA
1 AGGGCAACAAGCCCGCGTGGA
*
51114749 AGGGCAACACGCCCGCGTGG
1 AGGGCAACAAGCCCGCGTGG
51114769 TCATTATAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.30, G:0.40, T:0.07
Consensus pattern (21 bp):
AGGGCAACAAGCCCGCGTGGA
Found at i:51116147 original size:48 final size:50
Alignment explanation
Indices: 51115934--51116166 Score: 173
Period size: 48 Copynumber: 4.8 Consensus size: 50
51115924 TAGGGTGTAT
* * * * *
51115934 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CAT-TAAG
1 TGCCAATGCCATGTTCCAGACATGGTCTTACACTGACAC-TCACATATACG
* * * * * *
51115983 T--CGATGCCATGTCCCAGACATTGTCTTCCATTGACTA-TCA-AAAT-CG
1 TGCCAATGCCATGTTCCAGACATGGTCTTACACTGAC-ACTCACATATACG
* * * * *
51116029 AGGCCGACGCCATG-TCCTAGACATGGTCTTACAC-AAGCACTCACATATCCG
1 -TGCCAATGCCATGTTCC-AGACATGGTCTTACACTGA-CACTCACATATACG
* * *
51116080 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACAC-CTC-TATACG
1 TGCCAATGCCATGTTCCAGACATGGTCTTACACTGACACTCACATATACG
51116128 TGCCAATGCCATGTTCCAGACATGGTCTTACACTGACAC
1 TGCCAATGCCATGTTCCAGACATGGTCTTACACTGACAC
51116167 ATCTCGTAAC
Statistics
Matches: 148, Mismatches: 23, Indels: 27
0.75 0.12 0.14
Matches are distributed among these distances:
46 4 0.03
47 31 0.21
48 46 0.31
49 29 0.20
50 33 0.22
51 5 0.03
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (50 bp):
TGCCAATGCCATGTTCCAGACATGGTCTTACACTGACACTCACATATACG
Found at i:51116233 original size:46 final size:47
Alignment explanation
Indices: 51116144--51116303 Score: 154
Period size: 46 Copynumber: 3.5 Consensus size: 47
51116134 TGCCATGTTC
* * *
51116144 CAGACATGGTCTTACACTGAC--ACATCTCGTAACT-GATGAATGTCA
1 CAGACATGGTCTTACACTGGCTTACATCTCG-AAGTCGATGCATGTCA
* *
51116189 CAGACAT-GTCTTACACTGGCTTACATCTCGAGGTCGATGCATGTCC
1 CAGACATGGTCTTACACTGGCTTACATCTCGAAGTCGATGCATGTCA
* * *
51116235 CAGACAT-GTCTTACACTAGCTCT-CGTCTC-AATGTCGATGCCATGTCT
1 CAGACATGGTCTTACACTGGCT-TACATCTCGAA-GTCGATG-CATGTCA
*
51116282 CAGACATGGTCGTACACTGGCT
1 CAGACATGGTCTTACACTGGCT
51116304 CTCATAATGT
Statistics
Matches: 97, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
44 12 0.12
45 10 0.10
46 49 0.51
47 14 0.14
48 12 0.12
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
CAGACATGGTCTTACACTGGCTTACATCTCGAAGTCGATGCATGTCA
Found at i:51116981 original size:21 final size:21
Alignment explanation
Indices: 51116942--51116981 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
51116932 GAAAGGAAAT
* **
51116942 AATAAAAGAAATACTAAGGAC
1 AATAAAAGAAAAAAAAAGGAC
51116963 AATAAAAGAAAAAAAAAGG
1 AATAAAAGAAAAAAAAAGG
51116982 GGTTATTACC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.70, C:0.05, G:0.15, T:0.10
Consensus pattern (21 bp):
AATAAAAGAAAAAAAAAGGAC
Found at i:51118487 original size:28 final size:28
Alignment explanation
Indices: 51118422--51118571 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
51118412 GAGATTGGCG
* * * *
51118422 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
51118451 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
51118479 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
51118507 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
51118535 CTAAGTGTGCGAG-TTG-TTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
51118561 CTGAGTGTGCG
1 CTAAGTGTGCG
51118572 GACTTAATAT
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
26 20 0.18
27 3 0.03
28 76 0.67
29 15 0.13
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:51131301 original size:47 final size:47
Alignment explanation
Indices: 51131247--51131578 Score: 513
Period size: 47 Copynumber: 7.1 Consensus size: 47
51131237 TTAGGATTTT
** * *
51131247 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51131294 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
51131341 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51131388 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
51131435 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
51131482 ATGTGATGAATGTGAATATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
51131529 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
51131576 ATG
1 ATG
51131579 CGAAATGTGT
Statistics
Matches: 267, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 264 0.99
48 3 0.01
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:51131523 original size:25 final size:25
Alignment explanation
Indices: 51131452--51131523 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 25
51131442 GAATGTGAAC
*
51131452 ATGCATATATGTGATAAGGCCGAAT
1 ATGCATATATGTGATAAGGCAGAAT
* * * *
51131477 -GGC-CA-ATGTGATGAATG-TGAAT
1 ATGCATATATGTGAT-AAGGCAGAAT
51131499 ATGCATATATGTGATAAGGCAGAAT
1 ATGCATATATGTGATAAGGCAGAAT
51131524 GGCCAATGTG
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
22 11 0.32
23 6 0.18
24 6 0.18
25 11 0.32
ACGTcount: A:0.36, C:0.10, G:0.26, T:0.28
Consensus pattern (25 bp):
ATGCATATATGTGATAAGGCAGAAT
Found at i:51131608 original size:46 final size:46
Alignment explanation
Indices: 51131552--51131780 Score: 370
Period size: 46 Copynumber: 5.0 Consensus size: 46
51131542 GGAAGTGTAT
* *
51131552 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
51131598 ATATGAGGTAAAGCCAAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
51131644 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
*
51131690 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * *
51131736 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATC-TGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGA-AACGTGTATGAGATG
51131781 TGTATATATA
Statistics
Matches: 173, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 171 0.99
47 2 0.01
ACGTcount: A:0.35, C:0.10, G:0.31, T:0.24
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:51135798 original size:42 final size:42
Alignment explanation
Indices: 51135734--51135893 Score: 171
Period size: 42 Copynumber: 3.8 Consensus size: 42
51135724 TTAGGGTTAC
* * * *
51135734 TGAGATTACGTGTAAGAACATATTTGGGATATGGAATCTATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGAATCGATA
* *
51135776 TGAGATTTCATGTAAGACCATATCTGGGATAT-GACATCGATG
1 TGAGATTACATGTAAGACCATATCTGGGATATGGA-ATCGATA
* * * *
51135818 TGAGACTT-CATGTAAGACCATAGCTAGGCTATTGGCATCGATA
1 TGAGA-TTACATGTAAGACCATATCTGGGATA-TGGAATCGATA
* *
51135861 CGAGATTACATGTAACACCATATCTGGGATATG
1 TGAGATTACATGTAAGACCATATCTGGGATATG
51135894 ACATTGGTAC
Statistics
Matches: 97, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.02
42 62 0.64
43 32 0.33
44 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGGAATCGATA
Found at i:51151550 original size:40 final size:39
Alignment explanation
Indices: 51151466--51151650 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
51151456 TTGAATGATG
* * * * *
51151466 TCCGGGCTACGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
51151506 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51151546 TCCGGGCTAAGCCCGAAGGCCTTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
51151585 TCCGGGTTAAGTCTTGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTA-AA
*
51151626 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
51151651 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 35 0.29
40 74 0.62
41 11 0.09
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:51151672 original size:79 final size:79
Alignment explanation
Indices: 51151521--51151673 Score: 195
Period size: 79 Copynumber: 1.9 Consensus size: 79
51151511 ACTAAGATCC
* * **
51151521 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCCTTTGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
51151586 CCGGGTTAAGTCTT
66 CCGGGTTAAGTCTT
* *
51151600 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTA
*
51151663 TATCC-GGTTAA
63 AATCCGGGTTAA
51151674 ATTCCGAAGG
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.59
80 24 0.38
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGGTTAAGTCTT
Found at i:51151683 original size:79 final size:78
Alignment explanation
Indices: 51151513--51151683 Score: 186
Period size: 79 Copynumber: 2.2 Consensus size: 78
51151503 ATATCCGGAC
* * **
51151513 TAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCCTTTGTGCGAGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGT
51151578 TACTAAATCCGGGT
65 TACTAAATCCGGGT
* * *
51151592 TAAGTCTTGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTC-CGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGA
*
51151656 G-TAGCTATATCC-GGT
63 GTTA-CTAAATCCGGGT
*
51151671 TAAATTCCGAAGG
1 T-AAGTCCGAAGG
51151684 TACGTGATTT
Statistics
Matches: 77, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
78 4 0.05
79 45 0.58
80 28 0.36
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (78 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTT
ACTAAATCCGGGT
Found at i:51159494 original size:79 final size:81
Alignment explanation
Indices: 51159358--51159542 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
51159348 TTGAATGATG
*
51159358 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
51159422 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
51159437 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
51159499 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
51159517 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
51159543 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:51159556 original size:40 final size:40
Alignment explanation
Indices: 51159359--51159542 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
51159349 TGAATGATGT
* * * *
51159359 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
51159399 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
51159439 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51159477 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
51159518 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
51159543 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:51159564 original size:79 final size:79
Alignment explanation
Indices: 51159411--51159575 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
51159401 GGACTAAGAT
* **
51159411 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
51159476 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
51159490 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
51159553 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
51159569 CCGAAGG
1 CCGAAGG
51159576 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:51163841 original size:49 final size:49
Alignment explanation
Indices: 51163738--51164095 Score: 187
Period size: 49 Copynumber: 7.6 Consensus size: 49
51163728 TACGATGCCA
* * * * * *
51163738 ATGCCATGTTCCAAACATGGTCTTACACT-A-GCTCACATATCTAAGTCG
1 ATGCCATGTCCCAGACA-GGTCTTACACTGACTCTCAAATATCGAGGTCG
* *
51163786 ATGCCATGTCCTAGATAGGTCTTACACTGACT-TCCAAATAT-GAAGGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCT-CAAATATCG-AGGTCG
* ** *
51163835 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGATGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCAAATATCGAGGTCG
* * * * * *
51163884 ATTCCATGTCCCAGACAGGTCTTACACT-A---ACACATGTCAAGCT-G
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCAAATATCGAGGTCG
* * * * *
51163928 ATGCCATGTCCCAGACAAGTCTTACACTGGCT-TGCATATCTAGAGG-CTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCT-CAAATATCGAGGTC-G
* * * * * * *
51163977 ATG-CATGTTCCAGACATGTCTTACACT-AGCTCTC--GTCTCAATGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCAAATATCGAGGTCG
* * * * * * *
51164023 ATG-GATGTCCCAGATATGTCTTACACTGGCTCTCATA-AT-GTGGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCAAATATCGAGGTCG
*
51164069 ATG-CATGTCCCAGACATGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
51164096 AGCACACATA
Statistics
Matches: 242, Mismatches: 50, Indels: 38
0.73 0.15 0.12
Matches are distributed among these distances:
44 27 0.11
45 7 0.03
46 64 0.26
47 13 0.05
48 47 0.19
49 82 0.34
50 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCAAATATCGAGGTCG
Found at i:51163893 original size:98 final size:91
Alignment explanation
Indices: 51163738--51164096 Score: 249
Period size: 92 Copynumber: 3.8 Consensus size: 91
51163728 TACGATGCCA
* * * * * *
51163738 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCTAAGTCGATGCCATGTCCTAGATA
1 ATGCCATGTCCCAGACA-GGTCTTACACTGGCTCACATATCGAAGTCGATGCCATGTCCCAGACA
* * *
51163803 GGTCTTACACTGACTTCCAAATATGAAGGTCG
65 GGTCTTACACT-A---ACAAATATCAAGCT-G
* * *
51163835 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGATGTCGATTCCATGTCCCAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCACA--TATCGAAGTCGATGCCATGTCCCAGAC
* *
51163900 AGGTCTTACACTAACACATGTCAAGCTG
64 AGGTCTTACACTAACAAATATCAAGCTG
* ** * * *
51163928 ATGCCATGTCCCAGACAAGTCTTACACTGGCTTGCATATCTAGAGGCTGATG-CATGTTCCAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCACATATCGA-AGTC-GATGCCATGTCCCAGAC
* * *** * *
51163992 ATGTCTTACACTAGCTCTCGTCTCAATGCCG
64 AGGTCTTACACTA--ACAAATATCAA-GCTG
* * * * ** *
51164023 ATG-GATGTCCCAGATATGTCTTACACTGGCTCTCATAAT-GTGGCCGATG-CATGTCCCAGACA
1 ATGCCATGTCCCAGACAGGTCTTACACTGGCTCACAT-ATCGAAGTCGATGCCATGTCCCAGACA
*
51164085 TGTCTTACACTA
65 GGTCTTACACTA
51164097 GCACACATAT
Statistics
Matches: 216, Mismatches: 38, Indels: 21
0.79 0.14 0.08
Matches are distributed among these distances:
91 5 0.02
92 53 0.25
93 39 0.18
94 44 0.20
95 8 0.04
96 17 0.08
97 16 0.07
98 34 0.16
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (91 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGGCTCACATATCGAAGTCGATGCCATGTCCCAGACAG
GTCTTACACTAACAAATATCAAGCTG
Found at i:51164042 original size:46 final size:45
Alignment explanation
Indices: 51163927--51164098 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 45
51163917 ATGTCAAGCT
* * * *
51163927 GATGCCATGTCCCAGACAAGTCTTACACTGGCT-TGCATATCTAGAGGCT
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTCT-CATA---AGTGGCC
* *
51163976 GATGCATGTTCCAGACATGTCTTACACTAGCTCTCGTCTCAA-T-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AAGTGGCC
* * *
51164022 GATGGATGTCCCAGATATGTCTTACACTGGCTCTCATAATGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAA-GTGGCC
51164068 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
51164099 ACACATATCA
Statistics
Matches: 102, Mismatches: 14, Indels: 17
0.77 0.11 0.13
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 1 0.01
46 64 0.63
48 27 0.26
49 5 0.05
50 1 0.01
51 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGTGGCC
Found at i:51167923 original size:37 final size:37
Alignment explanation
Indices: 51167823--51167926 Score: 163
Period size: 37 Copynumber: 2.8 Consensus size: 37
51167813 TGAATAGTCC
* *
51167823 CCACACGTAGTTATCGGGTCTTACCCAGAAAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGAAAAAATCT
* * *
51167860 CCACATGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGAAAAAATCT
51167897 CCACACGTAGTCATCGGGTCTTACCCGGAA
1 CCACACGTAGTCATCGGGTCTTACCCGGAA
51167927 TATATTTCCA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGAAAAAATCT
Found at i:51168152 original size:48 final size:48
Alignment explanation
Indices: 51168098--51168544 Score: 717
Period size: 48 Copynumber: 9.4 Consensus size: 48
51168088 GCCGAATCAC
*
51168098 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
51168146 TAGCCATTCGGCTTTACGACGTATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
51168194 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
51168242 TAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCACAG
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
51168290 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTTACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
51168338 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
51168386 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
**
51168434 TAG-C---C-G-AATACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
51168476 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
51168524 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
51168545 CACATATATA
Statistics
Matches: 373, Mismatches: 20, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
42 36 0.10
43 2 0.01
44 1 0.00
46 1 0.00
47 2 0.01
48 331 0.89
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:51168475 original size:90 final size:90
Alignment explanation
Indices: 51168352--51168528 Score: 336
Period size: 90 Copynumber: 2.0 Consensus size: 90
51168342 CATTCGGCTT
* *
51168352 TACCGCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCGCATATACATATC
1 TACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
51168417 TCATACATATTTCACATTAGCCGAA
66 TCATACATATTTCACATTAGCCGAA
51168442 TACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
1 TACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
51168507 TCATACATATTTCACATTAGCC
66 TCATACATATTTCACATTAGCC
51168529 ATTCGGCTTT
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
90 85 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.34
Consensus pattern (90 bp):
TACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATC
TCATACATATTTCACATTAGCCGAA
Found at i:51172799 original size:37 final size:37
Alignment explanation
Indices: 51172758--51172831 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
51172748 AGATCCCAAT
*
51172758 AGAGTAGTGGTGGATGATGTTGAAAGTAACATGCCTA
1 AGAGTAGTGGCGGATGATGTTGAAAGTAACATGCCTA
51172795 AGAGTAGTGGCGGATGATGTTGAAAGTAACATGCCTA
1 AGAGTAGTGGCGGATGATGTTGAAAGTAACATGCCTA
51172832 CTCCTACTGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.26
Consensus pattern (37 bp):
AGAGTAGTGGCGGATGATGTTGAAAGTAACATGCCTA
Found at i:51181865 original size:48 final size:48
Alignment explanation
Indices: 51181697--51181873 Score: 149
Period size: 48 Copynumber: 3.7 Consensus size: 48
51181687 AATTTCATAC
* * * * * * *
51181697 GATGCCAAAGCCATATCCCAAATATGGTCTTACATAGGATCTCAAATC
1 GATGCCGATGCCATATCCCAAACATGGTCTTATACAGGATCTCATATT
* * * * * *
51181745 GATGTCGATGCCATATCCCATATATGGTCTTATTC-GGGTCTCATAAT
1 GATGCCGATGCCATATCCCAAACATGGTCTTATACAGGATCTCATATT
* * * * *
51181792 GATGCTGATGCCATGTCCTAGACATGTTCTTATACAGGATCTCATATT
1 GATGCCGATGCCATATCCCAAACATGGTCTTATACAGGATCTCATATT
* * * *
51181840 AATGCCGAGGCCATGTCCCAAACATGGTTTTATA
1 GATGCCGATGCCATATCCCAAACATGGTCTTATA
51181874 TGAAATCTTA
Statistics
Matches: 100, Mismatches: 28, Indels: 2
0.77 0.22 0.02
Matches are distributed among these distances:
47 35 0.35
48 65 0.65
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (48 bp):
GATGCCGATGCCATATCCCAAACATGGTCTTATACAGGATCTCATATT
Found at i:51183517 original size:22 final size:22
Alignment explanation
Indices: 51183492--51183539 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
51183482 CAATCATAGG
*
51183492 CAAAGTAAAATTATTACCAAGA
1 CAAAGTAAAACTATTACCAAGA
*
51183514 CAAAGTAAAACTATTACTAAGA
1 CAAAGTAAAACTATTACCAAGA
51183536 CAAA
1 CAAA
51183540 CGTATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.56, C:0.15, G:0.08, T:0.21
Consensus pattern (22 bp):
CAAAGTAAAACTATTACCAAGA
Found at i:51190538 original size:16 final size:16
Alignment explanation
Indices: 51190519--51190550 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51190509 AATTATTTTA
51190519 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
51190535 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
51190551 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:51190830 original size:50 final size:50
Alignment explanation
Indices: 51190761--51191087 Score: 300
Period size: 50 Copynumber: 6.5 Consensus size: 50
51190751 CTGGTATGCA
* * * * *
51190761 TAGTAGCCTACACTGAGTACTACACATGCGACCTAACAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * **
51190811 TAGTAGCCTGCACTTAGTACTACACACGTGACTTATCAATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * * *
51190861 TAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* ** * ** *
51190911 TAGTAGCCTGTACTTAGTACTACACACGTGATCAAAACTATC-GAGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTAACAATCTG-GTACACG
* * * * * * *
51190962 TGGTCGCCTGTACTTATTACTACACATGTGACCTAACAATCTGTTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * *
51191012 TAGTAGCCTACACTTAGTACTACACACGTGACCTAA-AA-CTGTCTTACACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTG--GT--ACACG
*
51191064 TAGTAGCCTGCACATAGTACTACA
1 TAGTAGCCTGCACTTAGTACTACA
51191088 TATATGTTCT
Statistics
Matches: 230, Mismatches: 40, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
48 3 0.01
49 2 0.01
50 159 0.69
51 39 0.17
52 27 0.12
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
Found at i:51191010 original size:101 final size:100
Alignment explanation
Indices: 51190759--51191087 Score: 363
Period size: 101 Copynumber: 3.3 Consensus size: 100
51190749 CTCTGGTATG
* * * * **
51190759 CATAGTAGCCTACACTGAGTACTACACATGCGACCTAACAATCTGGTACATGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGATACACATAGTAGCCTGCAC
** * *
51190824 TTAGTACTACACACGTGACTTATCAATCCAGTACA
66 TTAGTACTACACACGTGACAAAACTATCCAGTACA
* * * * *
51190859 CGTAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACATAGTAGCCTGTAC
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGATACACATAGTAGCCTGCAC
* **
51190924 TTAGTACTACACACGTGATCAAAACTATCGAGTATG
66 TTAGTACTACACACGTGA-CAAAACTATCCAGTACA
* * * * * *
51190960 CATGGTCGCCTGTACTTATTACTACACATGTGACCTAACAATCTGTTACACATAGTAGCCTACAC
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGATACACATAGTAGCCTGCAC
* * *
51191025 TTAGTACTACACACGTGACCTAAAACTGTCTTA-CACA
66 TTAGTACTACACACGTGA-C-AAAACTATC-CAGTACA
*
51191062 CATAGTAGCCTGCACATAGTACTACA
1 CATAGTAGCCTGCACTTAGTACTACA
51191088 TATATGTTCT
Statistics
Matches: 186, Mismatches: 40, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
100 72 0.39
101 83 0.45
102 30 0.16
103 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (100 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGATACACATAGTAGCCTGCAC
TTAGTACTACACACGTGACAAAACTATCCAGTACA
Found at i:51197166 original size:180 final size:180
Alignment explanation
Indices: 51196914--51197240 Score: 498
Period size: 180 Copynumber: 1.8 Consensus size: 180
51196904 AATTTACTTT
* * * *
51196914 GAAACTAGACTCATATATCTTCTTACCATAAAATTTTTAGAATTTTTAGTTTATCCAATTAGTAC
1 GAAACTAAACTCACATATATTCTTACCATAAAATTTTTAGAATTTTTAGTTTATCAAATTAGTAC
* * * *
51196979 AGTTTATTCA-TTAAAAATACCCCTTATTTCACTGTCTAATAGTTCTGACCTCACTTCACTAAAA
66 AGTTTATT-AGTTAAAAATACCCC-TATTTCACTGTCCAACAATTCTGACATCACTTCACTAAAA
*
51197043 ATTATTTT-TTTCATGGTACGAGACTCCAAATTGAGAACCACTAATTTTACTA
129 ATT-TTTTATCTCATGGTACGAGACTCCAAATTGAGAACCACTAATTTTACTA
51197095 GAAACTAAACTCACATATATTCTTACCAT-AAATTTTTAGAATTTTTAGTTTATCAAATTAGTAC
1 GAAACTAAACTCACATATATTCTTACCATAAAATTTTTAGAATTTTTAGTTTATCAAATTAGTAC
* * *
51197159 AGTTTATTAGTTAAAGATACCCCTATTTCAGTGTCCAACAATTCTGACATCTCTTCACTAAAAAT
66 AGTTTATTAGTTAAAAATACCCCTATTTCACTGTCCAACAATTCTGACATCACTTCACTAAAAAT
51197224 TTTTTATCTCATGGTAC
131 TTTTTATCTCATGGTAC
51197241 AGCTCTCGGA
Statistics
Matches: 132, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
178 4 0.03
179 48 0.36
180 54 0.41
181 26 0.20
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.39
Consensus pattern (180 bp):
GAAACTAAACTCACATATATTCTTACCATAAAATTTTTAGAATTTTTAGTTTATCAAATTAGTAC
AGTTTATTAGTTAAAAATACCCCTATTTCACTGTCCAACAATTCTGACATCACTTCACTAAAAAT
TTTTTATCTCATGGTACGAGACTCCAAATTGAGAACCACTAATTTTACTA
Found at i:51197888 original size:19 final size:19
Alignment explanation
Indices: 51197864--51197900 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
51197854 AGCCTGCACT
51197864 TAGTACTACACACGTGACG
1 TAGTACTACACACGTGACG
51197883 TAGTACTACACACGTGAC
1 TAGTACTACACACGTGAC
51197901 TTATCGATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (19 bp):
TAGTACTACACACGTGACG
Found at i:51197925 original size:69 final size:69
Alignment explanation
Indices: 51197814--51197949 Score: 218
Period size: 69 Copynumber: 2.0 Consensus size: 69
51197804 AGCCTGCACT
* *
51197814 TAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGT
1 TAGTACTACACACGCGACCTATCAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGT
51197879 GACG
66 GACG
* * * *
51197883 TAGTACTACACACGTGACTTATCGATCTGATACACGTAGTAGCTTGCACTTAGTACTACACACGT
1 TAGTACTACACACGCGACCTATCAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGT
51197948 GA
66 GA
51197950 TCGAAGTTAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (69 bp):
TAGTACTACACACGCGACCTATCAATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGT
GACG
Found at i:51197941 original size:50 final size:50
Alignment explanation
Indices: 51197883--51198248 Score: 290
Period size: 50 Copynumber: 7.2 Consensus size: 50
51197873 ACACGTGACG
* * * * *
51197883 TAGTACTACACACGTGACTTATCGATCTGATACACGTAGTAGCTTGCACT
1 TAGTACTACACACGTGACCTATCAATCTGGTACACATAGTAGCCTGCACT
** * * **
51197933 TAGTACTACACACGTGATCGAAGTTAA-CGGGTATGCATAGTAGCCTGCACT
1 TAGTACTACACACGTGA-CCTA-TCAATCTGGTACACATAGTAGCCTGCACT
* * * * *
51197984 TAGTACTACACATGCGACCTATCAATCCGGTATACGTAGTAGCCTGCACT
1 TAGTACTACACACGTGACCTATCAATCTGGTACACATAGTAGCCTGCACT
* * * * *
51198034 TAGTACTACACACGTGACCT-TACCATCTGATAGATATAGTAGCATGCACT
1 TAGTACTACACACGTGACCTAT-CAATCTGGTACACATAGTAGCCTGCACT
** * * * ** *
51198084 TAGTACTACACACGTGATCAAAACTATCGGGTACGTATAGTAGCCTACACT
1 TAGTACTACACACGTGA-CCTATCAATCTGGTACACATAGTAGCCTGCACT
* * * *
51198135 TAGTACTACACATGCGACCTAACAATCTGGTACACATAGTAGCCTACACT
1 TAGTACTACACACGTGACCTATCAATCTGGTACACATAGTAGCCTGCACT
* * * * *
51198185 TAGTACTACACACATGACCTA--AAACTGTCTTAAACACATAGTAGCCTGTACA
1 TAGTACTACACACGTGACCTATCAATCTG--GT--ACACATAGTAGCCTGCACT
51198237 TAGTACTACACA
1 TAGTACTACACA
51198249 TGTGTTCTCA
Statistics
Matches: 253, Mismatches: 53, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
48 5 0.02
49 4 0.02
50 142 0.56
51 72 0.28
52 30 0.12
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTACTACACACGTGACCTATCAATCTGGTACACATAGTAGCCTGCACT
Found at i:51198161 original size:151 final size:152
Alignment explanation
Indices: 51197883--51198204 Score: 468
Period size: 151 Copynumber: 2.1 Consensus size: 152
51197873 ACACGTGACG
* * *
51197883 TAGTACTACACACGTGA-CTTATCGATCTGATACACGTAGTAGCTTGCACTTAGTACTACACACG
1 TAGTACTACACACGTGACCTTATCCATCTGATACACATAGTAGCATGCACTTAGTACTACACACG
* ** * * *
51197947 TGATCGAAGTTAACGGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCC
66 TGATCAAAACTAACGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCC
* * *
51198012 GGTATACGTAGTAGCCTGCACT
131 GGTACACATAGTAGCCTACACT
* *
51198034 TAGTACTACACACGTGACCTTA-CCATCTGATAGATATAGTAGCATGCACTTAGTACTACACACG
1 TAGTACTACACACGTGACCTTATCCATCTGATACACATAGTAGCATGCACTTAGTACTACACACG
* * *
51198098 TGATCAAAACTATCGGGTACGTATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCT
66 TGATCAAAACTAACGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCC
51198163 GGTACACATAGTAGCCTACACT
131 GGTACACATAGTAGCCTACACT
*
51198185 TAGTACTACACACATGACCT
1 TAGTACTACACACGTGACCT
51198205 AAAACTGTCT
Statistics
Matches: 152, Mismatches: 18, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
151 148 0.97
152 4 0.03
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.26
Consensus pattern (152 bp):
TAGTACTACACACGTGACCTTATCCATCTGATACACATAGTAGCATGCACTTAGTACTACACACG
TGATCAAAACTAACGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCC
GGTACACATAGTAGCCTACACT
Found at i:51201380 original size:24 final size:24
Alignment explanation
Indices: 51201348--51201398 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
51201338 GTACCCAAAC
51201348 TTTTAGCTTTTCGGCATTTCAGCT
1 TTTTAGCTTTTCGGCATTTCAGCT
* * *
51201372 TTTTGGCTTTTTGGCATTTCGGCT
1 TTTTAGCTTTTCGGCATTTCAGCT
51201396 TTT
1 TTT
51201399 GCTGATGCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.08, C:0.18, G:0.20, T:0.55
Consensus pattern (24 bp):
TTTTAGCTTTTCGGCATTTCAGCT
Found at i:51207443 original size:42 final size:42
Alignment explanation
Indices: 51207337--51207445 Score: 121
Period size: 43 Copynumber: 2.6 Consensus size: 42
51207327 GTCTGAGACA
* *
51207337 TCGTGTAAGACCGTGTCTGGGACACAGGCTTCGATTAAGATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTAAGATT
* * ** *
51207379 TAAGTATAAGACCATGTCTGGGACATTGGCATC-ATATATGATT
1 T-CGTGTAAGACCATGTCTGGGACACAGGCATCGAT-TAAGATT
*
51207422 TCGTGTAAGACCCTGTCTGGGACA
1 TCGTGTAAGACCATGTCTGGGACA
51207446 GAGGTATCAA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
42 23 0.42
43 32 0.58
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTAAGATT
Found at i:51209025 original size:26 final size:26
Alignment explanation
Indices: 51208989--51209043 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
51208979 GATAAGGAGA
51208989 GAAGTGAAACTTCCTGAATGATGAAT
1 GAAGTGAAACTTCCTGAATGATGAAT
51209015 GAAGTGAAACTTCCTGAATGATGAAT
1 GAAGTGAAACTTCCTGAATGATGAAT
51209041 GAA
1 GAA
51209044 CTCCTTGAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.25
Consensus pattern (26 bp):
GAAGTGAAACTTCCTGAATGATGAAT
Found at i:51209832 original size:49 final size:49
Alignment explanation
Indices: 51209760--51209859 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
51209750 CTGAGAAGGG
51209760 TAGGTTCCACATCATTTCTCGATCATCCTCATATGTAGCATGCTCGAGA
1 TAGGTTCCACATCATTTCTCGATCATCCTCATATGTAGCATGCTCGAGA
51209809 TAGGTTCCACATCATTTCTCGATCATCCTCATATGTAGCATGCTCGAGA
1 TAGGTTCCACATCATTTCTCGATCATCCTCATATGTAGCATGCTCGAGA
51209858 TA
1 TA
51209860 CCCTGTGGAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (49 bp):
TAGGTTCCACATCATTTCTCGATCATCCTCATATGTAGCATGCTCGAGA
Found at i:51222264 original size:31 final size:31
Alignment explanation
Indices: 51222226--51222289 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
51222216 CCTTTTCATA
*
51222226 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
**
51222257 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATATTTCATAACACTAGGCCGAAGCCT
51222288 TT
1 TT
51222290 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTAGGCCGAAGCCT
Found at i:51222535 original size:49 final size:49
Alignment explanation
Indices: 51222482--51222675 Score: 175
Period size: 50 Copynumber: 4.0 Consensus size: 49
51222472 TGCTTTATCA
*
51222482 TATAACTGGAGGCCT-AGCCTCTTT-TAGTAACTGGGGAAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTATAGTAACTGGGGAAAAAGCCCTTTT
* * * *
51222531 TATAACTGGGGCATAAGCCCTTTATCGTAACTGGGGCATAAGCCCTTCAT
1 TATAACTGGGGCATAAGCCCTTTATAGTAACTGGGGAAAAAGCCCTT-TT
* * * * * *
51222581 CATAATTGGGGCATAAACCCTTTATCA-TAACTGGGGCATAAGACC-TTT
1 TATAACTGGGGCATAAGCCCTTTAT-AGTAACTGGGGAAAAAGCCCTTTT
* * * *
51222629 AATAACTAGGGCATAAGCCCTTTA-A-TAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTATAGTAACTGGGGAAAAAGCCCTTTT
51222676 GCACTTCCTC
Statistics
Matches: 124, Mismatches: 16, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
46 18 0.15
47 3 0.02
48 29 0.23
49 34 0.27
50 40 0.32
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (49 bp):
TATAACTGGGGCATAAGCCCTTTATAGTAACTGGGGAAAAAGCCCTTTT
Found at i:51222590 original size:25 final size:24
Alignment explanation
Indices: 51222509--51222673 Score: 190
Period size: 25 Copynumber: 6.8 Consensus size: 24
51222499 CCTCTTTTAG
* * * *
51222509 TAACTGGGGAAAAAGCCCTTTTTA
1 TAACTGGGGCATAAGCCCTTATCA
*
51222533 TAACTGGGGCATAAGCCCTTTATCG
1 TAACTGGGGCATAAGCCC-TTATCA
51222558 TAACTGGGGCATAAGCCCTTCATCA
1 TAACTGGGGCATAAGCCCTT-ATCA
* *
51222583 TAATTGGGGCATAAACCCTTTATCA
1 TAACTGGGGCATAAGCCC-TTATCA
* *
51222608 TAACTGGGGCATAAGACCTT-TAA
1 TAACTGGGGCATAAGCCCTTATCA
* *
51222631 TAACTAGGGCATAAGCCCTT-TAA
1 TAACTGGGGCATAAGCCCTTATCA
51222654 TAACTGGGGCATAAGCCCTT
1 TAACTGGGGCATAAGCCCTT
51222674 TTGCACTTCC
Statistics
Matches: 123, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
23 42 0.34
24 20 0.16
25 59 0.48
26 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
TAACTGGGGCATAAGCCCTTATCA
Found at i:51222605 original size:50 final size:48
Alignment explanation
Indices: 51222509--51222674 Score: 210
Period size: 50 Copynumber: 3.4 Consensus size: 48
51222499 CCTCTTTTAG
* * * *
51222509 TAACTGGGGAAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTATCG
1 TAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTATCA
* * *
51222558 TAACTGGGGCATAAGCCCTTCATCATAATTGGGGCATAAACCCTTTATCA
1 TAACTGGGGCATAAGCCCTT--TAATAACTGGGGCATAAGCCCTTTATCA
* *
51222608 TAACTGGGGCATAAGACCTTTAATAACTAGGGCATAAGCCCTTTA--A
1 TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTATCA
51222654 TAACTGGGGCATAAGCCCTTT
1 TAACTGGGGCATAAGCCCTTT
51222675 TGCACTTCCT
Statistics
Matches: 103, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
46 21 0.20
48 23 0.22
49 16 0.16
50 43 0.42
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (48 bp):
TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTATCA
Found at i:51222747 original size:9 final size:9
Alignment explanation
Indices: 51222733--51222790 Score: 53
Period size: 9 Copynumber: 6.0 Consensus size: 9
51222723 ATCTCATGTG
51222733 CATATCATA
1 CATATCATA
*
51222742 CATATCATGTG
1 CATATCA--TA
51222753 CATATCATA
1 CATATCATA
* *
51222762 CATGTCATGTG
1 CATATCA--TA
51222773 CATATCATA
1 CATATCATA
51222782 CATATCATA
1 CATATCATA
51222791 TTTATCAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 24 0.62
11 15 0.38
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:51222749 original size:20 final size:20
Alignment explanation
Indices: 51222721--51222789 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
51222711 ACATTTATAA
*
51222721 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
51222741 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
51222761 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
51222781 ACATATCAT
1 ACATATCAT
51222790 ATTTATCAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:51222756 original size:11 final size:11
Alignment explanation
Indices: 51222726--51222780 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
51222716 TATAAACATC
51222726 TCATGTGCATA
1 TCATGTGCATA
*
51222737 TCA--TACATA
1 TCATGTGCATA
51222746 TCATGTGCATA
1 TCATGTGCATA
* *
51222757 TCA--TACATG
1 TCATGTGCATA
51222766 TCATGTGCATA
1 TCATGTGCATA
51222777 TCAT
1 TCAT
51222781 ACATATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:51224095 original size:27 final size:27
Alignment explanation
Indices: 51224033--51224110 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
51224023 GGGCATATTC
51224033 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
51224060 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
51224087 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
51224111 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:51224181 original size:27 final size:27
Alignment explanation
Indices: 51224151--51224565 Score: 152
Period size: 27 Copynumber: 15.3 Consensus size: 27
51224141 GTAAATCTAC
* *
51224151 AAACTAACGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTCAGTAATTTTAT
* * *
51224178 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACTAAGGGTATTTC-AGTAA-TTTTAT
* * * *
51224206 AAAGTCAAGGGTATTTCTGTAACTTTGT
1 AAACT-AAGGGTATTTCAGTAATTTTAT
* ** *
51224234 AAA-TCAGGGGTATTTTGGTAATTTTAC
1 AAACT-AAGGGTATTTCAGTAATTTTAT
* * * * *
51224261 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACTAAGGGTATTTCAGTAATTTTAT
* *
51224288 AAACCAAGGGTATTT-TGATAATTTTAT
1 AAACTAAGGGTATTTCAG-TAATTTTAT
* ** *
51224315 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACTAAGGGTATTTCAGTAATTTTAT
* *
51224342 AAACTAAGGGTATTTTAGTAATTTTGT
1 AAACTAAGGGTATTTCAGTAATTTTAT
* ** * *
51224369 AAA-TCGAGGGTAAAAT-AGTAATTCTGT
1 AAACT-AAGGGT-ATTTCAGTAATTTTAT
** * *
51224396 AAA-TCAAGGGTAAAAT-ACTAATTCTAT
1 AAACT-AAGGGT-ATTTCAGTAATTTTAT
*** * * *
51224423 AAA-TCAAGGGTAAAACTGTAATTCTGT
1 AAACT-AAGGGTATTTCAGTAATTTTAT
* *
51224450 AAA-TCGAGGGTACTTT-GGTAATTTTAT
1 AAACT-AAGGGTA-TTTCAGTAATTTTAT
* * * *
51224477 AAGTCGAA-GGTATTTTAGTAATTTTAC
1 AA-ACTAAGGGTATTTCAGTAATTTTAT
* * *
51224504 AAA-TCGAGGGTATTTCAGTATTTTTAC
1 AAACT-AAGGGTATTTCAGTAATTTTAT
*
51224531 AAACTAAGGGTATTTCGGTAATTTTAGT
1 AAACTAAGGGTATTTCAGTAATTTTA-T
51224559 AAACTAA
1 AAACTAA
51224566 AGTATTCTAA
Statistics
Matches: 303, Mismatches: 67, Indels: 35
0.75 0.17 0.09
Matches are distributed among these distances:
26 9 0.03
27 254 0.84
28 27 0.09
29 13 0.04
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (27 bp):
AAACTAAGGGTATTTCAGTAATTTTAT
Found at i:51224299 original size:54 final size:54
Alignment explanation
Indices: 51224241--51224380 Score: 183
Period size: 54 Copynumber: 2.6 Consensus size: 54
51224231 TGTAAATCAG
*
51224241 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
* * * * *
51224295 GGGTATTTTGATAATTTTATAAACT-AGGGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTATAAATTGA-GGGTATTTCGGTAATTTCACAAACCAA
* * *
51224349 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTATAAATTGAGGGTA
51224381 AAATAGTAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 71 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:51224380 original size:81 final size:81
Alignment explanation
Indices: 51224211--51224365 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
51224201 TTTAGAAAGT
* * *
51224211 CAAGGGTATTTCTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTCTGTAACTTTATAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
*
51224276 CGGTAATTTCACAAAC
66 CAGTAATTTCACAAAC
*
51224292 CAAGGGTATTT-TGATAATTTTATAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTAT
1 CAAGGGTATTTCTG-TAACTTTATAAATC-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTAT
*
51224355 TTTAGTAATTT
64 TTCAGTAATTT
51224366 TGTAAATCGA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 3 0.05
81 63 0.95
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTCTGTAACTTTATAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTT
CAGTAATTTCACAAAC
Found at i:51224407 original size:81 final size:81
Alignment explanation
Indices: 51224231--51224407 Score: 187
Period size: 81 Copynumber: 2.2 Consensus size: 81
51224221 TCTGTAACTT
* * *
51224231 TGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAG
1 TGTAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAG
** * *
51224296 GGTATTTTGATAATTT
66 GGTAAATAGATAATTC
* * *** * *
51224312 TATAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCGA
1 TGTAAATC-AGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAA
51224376 GGGTAAAATAG-TAATTC
65 GGGT-AAATAGATAATTC
*
51224393 TGTAAATCAAGGGTA
1 TGTAAATCAGGGGTA
51224408 AAATACTAAT
Statistics
Matches: 77, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
80 1 0.01
81 72 0.94
82 4 0.05
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (81 bp):
TGTAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAAG
GGTAAATAGATAATTC
Found at i:51226144 original size:44 final size:43
Alignment explanation
Indices: 51226063--51226169 Score: 110
Period size: 44 Copynumber: 2.5 Consensus size: 43
51226053 CCACTGCCGT
* * *
51226063 AGACAGGGTCTTATACA-AAATCAAATACGATGTCAACGTCCC
1 AGACATGGTCTTACACATAAATCAAATACGATGCCAACGTCCC
* *
51226105 TGACATGGTCTTACACATAAATCATAAGT-CGATGCCAACGTCGC
1 AGACATGGTCTTACACATAAATCA-AA-TACGATGCCAACGTCCC
**
51226149 AGATGTGGTCTTACACGATAA
1 AGACATGGTCTTACAC-ATAA
51226170 CACATATCGG
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 14 0.26
43 6 0.11
44 28 0.53
45 5 0.09
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (43 bp):
AGACATGGTCTTACACATAAATCAAATACGATGCCAACGTCCC
Found at i:51234486 original size:42 final size:43
Alignment explanation
Indices: 51234387--51234543 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
51234377 TCATACAATC
* * *
51234387 CCAACGTCCCAGAC-GTGGTCTTACAAGTAATCAAATATCAATG
1 CCAACGTCCCAGACAGTGGTCTTACACGAAATCAAATA-CGATG
*
51234430 CC-ACTGTCGCAGACAG-GGTCTTACACGAAATCAAATACGATG
1 CCAAC-GTCCCAGACAGTGGTCTTACACGAAATCAAATACGATG
*
51234472 CCAACGTCCCAGACA-TGGTCTTACACATAAATCATAAGT-CGATG
1 CCAACGTCCCAGACAGTGGTCTTACAC-GAAATCA-AA-TACGATG
* *
51234516 CCAACGTCACAGA-TGTGGTCTTACACGA
1 CCAACGTCCCAGACAGTGGTCTTACACGA
51234544 TAACACATAT
Statistics
Matches: 97, Mismatches: 9, Indels: 16
0.80 0.07 0.13
Matches are distributed among these distances:
42 27 0.28
43 38 0.39
44 31 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (43 bp):
CCAACGTCCCAGACAGTGGTCTTACACGAAATCAAATACGATG
Found at i:51239013 original size:40 final size:40
Alignment explanation
Indices: 51238976--51239200 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
51238966 GCTACTCGTT
* *
51238976 CAAATGCCTTCGGGACGTAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
51239016 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
51239056 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
51239096 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
51239135 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
51239176 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
51239201 CATCATTCGA
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 118 0.72
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51239160 original size:119 final size:120
Alignment explanation
Indices: 51238978--51239200 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
51238968 TACTCGTTCA
*
51238978 AATGCCTTCGGGACGTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACGTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* * *
51239043 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGAGACTTAACCCGGATTTAGTAACTCGCACC
* * **
51239098 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACGTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
51239160 ATATGGTCACTTAGCACAAAGCCTTCGAGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGAGACTTAACCCGGA
51239201 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACGTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:51240429 original size:55 final size:56
Alignment explanation
Indices: 51240328--51240446 Score: 231
Period size: 55 Copynumber: 2.1 Consensus size: 56
51240318 TATTAGTTTA
51240328 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
51240384 TTGCCCATGCTTCTTATTTTATT-TTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
51240439 TTGCCCAT
1 TTGCCCAT
51240447 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
55 40 0.63
56 23 0.37
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:51246995 original size:40 final size:40
Alignment explanation
Indices: 51246881--51247100 Score: 258
Period size: 40 Copynumber: 5.7 Consensus size: 40
51246871 GCTACTCGTT
*
51246881 CAAATGCCTTC-GGACATAGCCCGG-TTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
51246919 C--ATACCTTCGGGACTTAACCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
51246956 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
51246996 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
51247035 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
51247076 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51247101 CATCATTCGA
Statistics
Matches: 156, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
36 8 0.05
37 24 0.15
38 3 0.02
39 51 0.33
40 59 0.38
41 11 0.07
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:51247033 original size:79 final size:78
Alignment explanation
Indices: 51246881--51247100 Score: 268
Period size: 79 Copynumber: 2.8 Consensus size: 78
51246871 GCTACTCGTT
* * * *
51246881 CAAATGCCTTCGGACATAGCCCGG-TTTAGTAACTCGCAC-ATACCTTCGGGACTTAACCC-GAT
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGAA
51246943 TTAGTAACTCGCA
66 TTAGTAACTCGCA
*
51246956 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA-CAATGCCTTCGGGACTTAGCCCGG
*
51247020 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * * *
51247035 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCGG
51247100 A
64 A
51247101 CATCATTCGA
Statistics
Matches: 124, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
75 11 0.09
76 11 0.09
77 14 0.11
78 11 0.09
79 62 0.50
80 15 0.12
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:51248324 original size:55 final size:56
Alignment explanation
Indices: 51248223--51248341 Score: 231
Period size: 55 Copynumber: 2.1 Consensus size: 56
51248213 TATTAGTTTA
51248223 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
51248279 TTGCCCATGCTTCTTATTTTATT-TTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
51248334 TTGCCCAT
1 TTGCCCAT
51248342 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
55 40 0.63
56 23 0.37
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:51257607 original size:40 final size:40
Alignment explanation
Indices: 51257527--51257694 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
51257517 GCTACTCGTT
* *
51257527 CAAATGCCTTCGGGACAT-AGCCGG--TTATGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTA-GTAACTCGCA
*
51257565 CAAATACCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
51257605 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
51257645 C-AATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
51257682 CAAATGCCTTCGG
1 CAAATGCCTTCGG
51257695 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
37 22 0.19
38 27 0.23
39 15 0.13
40 50 0.43
41 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:51257684 original size:77 final size:78
Alignment explanation
Indices: 51257527--51257694 Score: 218
Period size: 77 Copynumber: 2.2 Consensus size: 78
51257517 GCTACTCGTT
* *
51257527 CAAATGCCTTCGGGACATAGCCGGTTATGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAT
1 CAAATGCCTTCGGGACATACCCGGTTATGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAA
*
51257592 TTAGTAACTCGCA
66 TTAGTAACTCACA
* * *
51257605 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCAC-AATGCCTTC-GG-CTTAGCCCG
1 CAAATGCCTTCGGGACAT-ACCCGG-TTAT-GTAACTCGCACAAATACCTTCGGGACTTAACCCG
*
51257666 GAATTAGTATCTCACA
63 GAATTAGTAACTCACA
51257682 CAAATGCCTTCGG
1 CAAATGCCTTCGG
51257695 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
77 34 0.43
78 19 0.24
79 14 0.17
80 13 0.16
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACATACCCGGTTATGTAACTCGCACAAATACCTTCGGGACTTAACCCGGAA
TTAGTAACTCACA
Found at i:51258963 original size:53 final size:57
Alignment explanation
Indices: 51258856--51258970 Score: 186
Period size: 54 Copynumber: 2.1 Consensus size: 57
51258846 TTAGTTTATT
51258856 GCCATGCTTCTTATTTTATATCTTCCATTAACAAACATGTTTCATGACATGTTTTGC
1 GCCATGCTTCTTATTTTATATCTTCCATTAACAAACATGTTTCATGACATGTTTTGC
51258913 -CCATGCTTCTTA-TTT-TAT-TTCCATTAACACAACATGTTTCATGACA-GTTTTGC
1 GCCATGCTTCTTATTTTATATCTTCCATTAACA-AACATGTTTCATGACATGTTTTGC
51258966 GCCAT
1 GCCAT
51258971 CATCCCTTGT
Statistics
Matches: 56, Mismatches: 0, Indels: 7
0.89 0.00 0.11
Matches are distributed among these distances:
53 18 0.32
54 23 0.41
55 3 0.05
56 12 0.21
ACGTcount: A:0.24, C:0.23, G:0.10, T:0.43
Consensus pattern (57 bp):
GCCATGCTTCTTATTTTATATCTTCCATTAACAAACATGTTTCATGACATGTTTTGC
Found at i:51263549 original size:40 final size:40
Alignment explanation
Indices: 51263491--51263740 Score: 319
Period size: 40 Copynumber: 6.3 Consensus size: 40
51263481 ATTTGAATGA
*
51263491 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
51263531 TATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
51263571 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
51263611 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* **
51263651 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT--TGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* * * * * *
51263689 TATACCCGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TAT-CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
51263730 TATCC-GGCTAA
1 TATCCGGGCTAA
51263741 ATTCCGAAGA
Statistics
Matches: 188, Mismatches: 17, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
38 3 0.02
39 33 0.18
40 145 0.77
41 7 0.04
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:51267920 original size:80 final size:80
Alignment explanation
Indices: 51267725--51267925 Score: 271
Period size: 80 Copynumber: 2.5 Consensus size: 80
51267715 ATGATAACCG
* ** * * *
51267725 GGCTAAGTCCCGAAGGCATTTGCCCTAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTCGAGCAAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTGGTG
*
51267789 CGAGTTACTATATCCG
65 CGAGTTACTATATCCA
* * *
51267805 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGTGC
1 GGCTAAGTCCCGAAGGCATTCGAGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGTGC
51267870 GAGTTACTATATCCA
66 GAGTTACTATATCCA
*
51267885 GGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATATCCGG
1 GGCTAAGTCCCGAAGGCATTCGAGCAAGTTA-CTATATCCGG
51267926 TTAAATCCCA
Statistics
Matches: 109, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 3 0.03
80 106 0.97
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTCGAGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTGGTGC
GAGTTACTATATCCA
Found at i:51267923 original size:40 final size:40
Alignment explanation
Indices: 51267722--51267904 Score: 287
Period size: 40 Copynumber: 4.6 Consensus size: 40
51267712 TGGATGATAA
** * *
51267722 CCGGGCTAAGTCCCGAAGGCATTTGCCCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
51267762 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
51267802 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
51267842 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
51267882 CCAGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
51267905 CGAGCAAGTA
Statistics
Matches: 135, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 1 0.01
40 134 0.99
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:51271167 original size:27 final size:27
Alignment explanation
Indices: 51271127--51271238 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
51271117 AGGAAGCGTC
*
51271127 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
51271154 CTGGTGGCTCTGCCACATATT-TCTG-T
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
51271180 CCTGGTGGCTCTGCCACGATTATCTGTAT
1 -CTGGTGGCTCTGCCACAATTATCTG-AT
* * * *
51271209 TTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
51271235 CTGG
1 CTGG
51271239 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
26 8 0.11
27 48 0.66
28 16 0.22
29 1 0.01
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:51271233 original size:54 final size:54
Alignment explanation
Indices: 51271124--51271238 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
51271114 TTGAGGAAGC
* *
51271124 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
51271178 GTCCTGGTGGCTCTGCCACGATTATCTGTATTTGGTGACTCTGTCACAT-TATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCT
*
51271232 GTTCTGG
1 GTCCTGG
51271239 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 36 0.68
55 17 0.32
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:51273852 original size:46 final size:45
Alignment explanation
Indices: 51273799--51273974 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
51273789 TATTTGGGCA
*
51273799 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
51273845 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
51273892 TCCCAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
51273938 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51273975 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:51273954 original size:93 final size:93
Alignment explanation
Indices: 51273795--51273966 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
51273785 AGGATATTTG
* * * *
51273795 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
51273860 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
51273888 GGCATCCCAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
*
51273953 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
51273967 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCCAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:51279457 original size:42 final size:42
Alignment explanation
Indices: 51279394--51279524 Score: 110
Period size: 42 Copynumber: 3.2 Consensus size: 42
51279384 GGCTTATTGC
* * *
51279394 CTAGCAAGCTTATTGCCAGTGTATAAAAATCAGACTTTGAGT
1 CTAGCAGGCTTAGTGACAGTGTATAAAAATCAGACTTTGAGT
* * * * *
51279436 CTAGCAGGTCTT-GTGATAGTGT-GAAATA-CA-AGCTTAG-GC
1 CTAGCAGG-CTTAGTGACAGTGTATAAAAATCAGA-CTTTGAGT
* * *
51279475 CTAGTAGGCTTATTGCCAGTGTATAAAAATCAGACTTTGAGT
1 CTAGCAGGCTTAGTGACAGTGTATAAAAATCAGACTTTGAGT
51279517 CTAGCAGG
1 CTAGCAGG
51279525 ACAGGCTTTA
Statistics
Matches: 65, Mismatches: 17, Indels: 14
0.68 0.18 0.15
Matches are distributed among these distances:
38 3 0.05
39 16 0.25
40 10 0.15
41 10 0.15
42 23 0.35
43 3 0.05
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
CTAGCAGGCTTAGTGACAGTGTATAAAAATCAGACTTTGAGT
Found at i:51282839 original size:43 final size:42
Alignment explanation
Indices: 51282768--51282918 Score: 126
Period size: 43 Copynumber: 3.5 Consensus size: 42
51282758 CGAAAAGCTC
* **
51282768 ATACAATGCCAACATCCTAGAC-GAGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCTAGACAG-GGTCTTACATGTAATCAA
* * * * *
51282810 ATATTGATGCCATTGTCCTAGACAGGGTCTTACACGAAATCAT
1 ATA-CGATGCCAATGTCCTAGACAGGGTCTTACATGTAATCAA
* * *
51282853 ATACGATGCCAATGTCCCAGACATGTTCTTACATGTAATTCTCAA
1 ATACGATGCCAATGTCCTAGACAGGGTCTTACATGTAA---TCAA
* *
51282898 AT-CTATGCCAATGTCCCAGAC
1 ATACGATGCCAATGTCCTAGAC
51282919 GTGATCTTAC
Statistics
Matches: 87, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 31 0.36
43 32 0.37
44 19 0.22
45 5 0.06
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
ATACGATGCCAATGTCCTAGACAGGGTCTTACATGTAATCAA
Found at i:51282875 original size:42 final size:43
Alignment explanation
Indices: 51282792--51282943 Score: 121
Period size: 43 Copynumber: 3.5 Consensus size: 43
51282782 TCCTAGACGA
* * * * * *
51282792 GGTCTTACATGTAATCAAATATTGATGCCATTGTCCTAGACAG
1 GGTCTTACACGAAATCATATATCGATGCCAATGTCCCAGACAG
*
51282835 GGTCTTACACGAAATCATATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCATATATCGATGCCAATGTCCCAGACAG
* * * * *
51282877 GTTCTTACATGTAATTC-TCAAATCTATGCCAATGTCCCAGAC-G
1 GGTCTTACACG-AAATCAT-ATATCGATGCCAATGTCCCAGACAG
* * *
51282920 TGATCTTACACAAAATCACATATC
1 -GGTCTTACACGAAATCATATATC
51282944 TGAATCCTAT
Statistics
Matches: 85, Mismatches: 19, Indels: 10
0.75 0.17 0.09
Matches are distributed among these distances:
42 27 0.32
43 32 0.38
44 26 0.31
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (43 bp):
GGTCTTACACGAAATCATATATCGATGCCAATGTCCCAGACAG
Found at i:51286942 original size:46 final size:46
Alignment explanation
Indices: 51286892--51287064 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 46
51286882 TGGTTGAGCA
* *
51286892 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
51286938 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
51286985 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
51287031 CCCGAGCTCATTGATTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51287065 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.56
47 29 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:51287050 original size:93 final size:93
Alignment explanation
Indices: 51286889--51287059 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
51286879 GGATGGTTGA
* *** *
51286889 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCATTGAGT
51286954 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
51286982 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACACCCGAGCTCATTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCATTGAGT
51287047 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51287060 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:51288655 original size:40 final size:40
Alignment explanation
Indices: 51288573--51288829 Score: 292
Period size: 40 Copynumber: 6.5 Consensus size: 40
51288563 AAGCCAAGTA
* * * *
51288573 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACCCGCACAAATG
* *
51288611 CCTTCGGGACATAGCCCGGATATAGTAACCCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
* *
51288651 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
*
51288691 CCTTCGGGACTTAGCTCGGATATAGTAACCCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
* * * *
51288730 CCTTCGGGACTTAGCCCGGATGTAATAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
* *
51288770 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAAC--CCGCACAAATG
*
51288811 CCTTCGGGACTTATCCCGG
1 CCTTCGGGACTTAGCCCGG
51288830 TTATCATCCA
Statistics
Matches: 189, Mismatches: 23, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
38 12 0.06
39 50 0.26
40 101 0.53
41 23 0.12
42 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACCCGCACAAATG
Found at i:51288741 original size:79 final size:79
Alignment explanation
Indices: 51288573--51288829 Score: 324
Period size: 79 Copynumber: 3.2 Consensus size: 79
51288563 AAGCCAAGTA
* * * *
51288573 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
51288635 GTAACCCGCACCAATG
65 GTAACCCGCA-AAATG
* *
51288651 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
51288716 TAACCCGCAAAATG
66 TAACCCGCAAAATG
* * *
51288730 CCTTCGGGACTTAGCCCGGATGTAATAACTCACACAAATGCCTTCGGGACTTAGCCCGGA-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
* *
51288794 GTCACTAGCGCAAAATG
65 GTAAC--CCGCAAAATG
*
51288811 CCTTCGGGACTTATCCCGG
1 CCTTCGGGACTTAGCCCGG
51288830 TTATCATCCA
Statistics
Matches: 158, Mismatches: 15, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
78 13 0.08
79 82 0.52
80 36 0.23
81 27 0.17
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACCCGCAAAATG
Found at i:51297812 original size:40 final size:40
Alignment explanation
Indices: 51297738--51297921 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
51297728 GCTACTCGTT
*
51297738 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
51297777 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
51297817 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
51297856 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
51297897 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51297922 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 43 0.35
40 66 0.53
41 13 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:51297837 original size:79 final size:80
Alignment explanation
Indices: 51297738--51297921 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 80
51297728 GCTACTCGTT
* * * *
51297738 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
51297801 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* **
51297817 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
51297882 TATGGTCACTTAGCA
66 TATAGTAACTTAGCA
51297897 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
51297922 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 3 0.03
79 67 0.74
80 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:51306988 original size:79 final size:81
Alignment explanation
Indices: 51306864--51307047 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
51306854 GCTACTCGTT
* *
51306864 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
51306927 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
51306943 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
51307006 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
51307023 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51307048 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:51307047 original size:40 final size:40
Alignment explanation
Indices: 51306845--51307047 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
51306835 CGGAATTTAA
** *
51306845 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51306885 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
51306924 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
51306963 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
51307003 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
51307043 CCGGA
1 CCGGA
51307048 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:51311981 original size:21 final size:20
Alignment explanation
Indices: 51311952--51311995 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
51311942 TTATAATGAC
*
51311952 AAAATAAATTATTTTAATTTAT
1 AAAATAAA-TAATTTAATTT-T
51311974 AAAA-AAATAATTTAATTTT
1 AAAATAAATAATTTAATTTT
51311993 AAA
1 AAA
51311996 TTTTCGTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 10 0.48
21 3 0.14
22 4 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
AAAATAAATAATTTAATTTT
Found at i:51315968 original size:40 final size:40
Alignment explanation
Indices: 51315905--51316122 Score: 341
Period size: 40 Copynumber: 5.5 Consensus size: 40
51315895 AAACCATGTA
* * *
51315905 CCTTCGGGATTTAG-TCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51315944 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51315984 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51316024 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
51316064 CCTTCGGGATTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
51316104 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51316123 TTGCCATCCG
Statistics
Matches: 166, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
39 15 0.09
40 150 0.90
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51323639 original size:31 final size:31
Alignment explanation
Indices: 51323604--51323667 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
51323594 TGAATGTATG
51323604 ATAATTGGTTATAGTGATGGCATGAAAATCC
1 ATAATTGGTTATAGTGATGGCATGAAAATCC
51323635 ATAATTGGTTATAGTGATGGCATGAAAATCC
1 ATAATTGGTTATAGTGATGGCATGAAAATCC
51323666 AT
1 AT
51323668 GAAGTGTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (31 bp):
ATAATTGGTTATAGTGATGGCATGAAAATCC
Found at i:51327700 original size:43 final size:43
Alignment explanation
Indices: 51327651--51327798 Score: 158
Period size: 43 Copynumber: 3.4 Consensus size: 43
51327641 TATCCCAGAT
* *
51327651 ATGGTCTTACATGTTATCACATATCGATGCCATTGTCCCAAAC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAAC
* * * *
51327694 AGGGTCTTACATGAAATCGA-TTAACGATGCCAATGTCCCAGAA-
1 ATGGTCTTACATGTAATC-ACATATCGATGCCAATGTCCCA-AAC
* * * *
51327737 ATGGTCTTACACGTAATCTCA-ATACAATGCAAATGTCCCAAAC
1 ATGGTCTTACATGTAATCACATAT-CGATGCCAATGTCCCAAAC
51327780 ATGGTCTTACATGTAATCA
1 ATGGTCTTACATGTAATCA
51327799 TATCTCGGTA
Statistics
Matches: 84, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
42 3 0.04
43 78 0.93
44 3 0.04
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAAC
Done.