Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 165 of 325
Found at i:53425127 original size:80 final size:80
Alignment explanation
Indices: 53425015--53425196 Score: 212
Period size: 80 Copynumber: 2.3 Consensus size: 80
53425005 CTCATTCAAT
* * *
53425015 GCCTTCGGGACTTAACCCGGATTTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-A
1 GCCTTCGGGACTTAACCCGGA-TATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA
*
53425078 TTAGT-A-TCTCGCACAAA
64 -TAGTCACT-TAGCACAAA
**
53425095 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
53425159 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
53425176 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
53425197 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 7 0.08
80 50 0.56
81 31 0.35
82 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:53437705 original size:24 final size:24
Alignment explanation
Indices: 53437660--53437706 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
53437650 ATGTGGAGGG
*
53437660 AATCAAGGAGAGGATTGGGGAGAA
1 AATCAAGGAGAGGATTAGGGAGAA
*
53437684 AATCAAGGAGAGGATTATGGAGA
1 AATCAAGGAGAGGATTAGGGAGA
53437707 GATTTTATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.43, C:0.04, G:0.38, T:0.15
Consensus pattern (24 bp):
AATCAAGGAGAGGATTAGGGAGAA
Found at i:53439089 original size:27 final size:27
Alignment explanation
Indices: 53439059--53439112 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
53439049 TCGATAAGAG
* *
53439059 TACCCTTATAGGGTAAAATGACT-ATTT
1 TACCCCTAGAGGGT-AAATGACTGATTT
*
53439086 TACCCCTCGAGGGTAAATGACTGATTT
1 TACCCCTAGAGGGTAAATGACTGATTT
53439113 GTGTTATGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (27 bp):
TACCCCTAGAGGGTAAATGACTGATTT
Found at i:53443045 original size:14 final size:14
Alignment explanation
Indices: 53443022--53443079 Score: 57
Period size: 14 Copynumber: 4.0 Consensus size: 14
53443012 AATATTATTT
53443022 ATTTAA-TAAATTA
1 ATTTAATTAAATTA
53443035 ATTTAATTAAATT-
1 ATTTAATTAAATTA
*
53443048 ATATTAACTAAATTAA
1 AT-TTAATTAAATT-A
53443064 ATTTTCAATTAAATTA
1 A-TTT-AATTAAATTA
53443080 TTTTCCTAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
13 8 0.22
14 16 0.43
16 4 0.11
17 9 0.24
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (14 bp):
ATTTAATTAAATTA
Found at i:53443077 original size:31 final size:26
Alignment explanation
Indices: 53443020--53443082 Score: 81
Period size: 31 Copynumber: 2.2 Consensus size: 26
53443010 AAAATATTAT
53443020 TTATTTAATAAATTAATTTAATTAAA
1 TTATTTAATAAATTAATTTAATTAAA
53443046 TTATATTAACTAAATTAAATTTTCAATTAAA
1 TTAT-TTAA-TAAATT-AA-TTT-AATTAAA
53443077 TTATTT
1 TTATTT
53443083 TCCTAACCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
26 4 0.12
27 4 0.12
28 6 0.19
29 2 0.06
30 5 0.16
31 11 0.34
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (26 bp):
TTATTTAATAAATTAATTTAATTAAA
Found at i:53444963 original size:40 final size:40
Alignment explanation
Indices: 53444919--53445007 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
53444909 TAATTATTGA
* *
53444919 TGATTGCACATACGTACCCCTGTTTGTAATTCAGTACCCC
1 TGATTGCACATACATACCCCTATTTGTAATTCAGTACCCC
* * * *
53444959 TGATTGCACATACATGCCTCTATTTGTACTTTAGTACCCC
1 TGATTGCACATACATACCCCTATTTGTAATTCAGTACCCC
*
53444999 TGAATGCAC
1 TGATTGCAC
53445008 TTATGTGCCC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.34
Consensus pattern (40 bp):
TGATTGCACATACATACCCCTATTTGTAATTCAGTACCCC
Found at i:53451110 original size:13 final size:13
Alignment explanation
Indices: 53451092--53451116 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
53451082 TATGTGATAT
53451092 GTGTGAAAATTTC
1 GTGTGAAAATTTC
53451105 GTGTGAAAATTT
1 GTGTGAAAATTT
53451117 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:53451914 original size:21 final size:20
Alignment explanation
Indices: 53451890--53451928 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
53451880 TTGAATTGAT
53451890 AAATGTGTGATTAATTTAGTG
1 AAATGTGT-ATTAATTTAGTG
*
53451911 AAATTTGTATTAATTTAG
1 AAATGTGTATTAATTTAG
53451929 ATCAAGCATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (20 bp):
AAATGTGTATTAATTTAGTG
Found at i:53452310 original size:42 final size:44
Alignment explanation
Indices: 53452250--53452338 Score: 101
Period size: 42 Copynumber: 2.1 Consensus size: 44
53452240 ATTGATTTGA
* *
53452250 GATTTACGTGTAAAACCATATCTGGGACATTAGCATC-ATATAT
1 GATTTACGTGTAAAACCATATCCGGGACAGTAGCATCGATATAT
* * * * *
53452293 GATTT-CGTTTAAGACCATGTCCGGGACAGTGGCATCGATATTT
1 GATTTACGTGTAAAACCATATCCGGGACAGTAGCATCGATATAT
53452336 GAT
1 GAT
53452339 AACATGTAAG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 25 0.66
43 13 0.34
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (44 bp):
GATTTACGTGTAAAACCATATCCGGGACAGTAGCATCGATATAT
Found at i:53452347 original size:85 final size:85
Alignment explanation
Indices: 53452207--53452370 Score: 181
Period size: 85 Copynumber: 1.9 Consensus size: 85
53452197 TTCTGGTATG
* * * * *
53452207 TGATTTCGTGTAAGACCACGTCGGGACGTTGGCATTGATTTGAGATTTACGTGTAAAACCATATC
1 TGATTTCGTGTAAGACCACGTCGGGACGTTGGCATCGATTTGAGATTAACATGTAAAACCACATA
53452272 TGGGACATTAGCATCATATA
66 TGGGACATTAGCATCATATA
* * * *
53452292 TGATTTCGTTTAAGACCATGTCCGGGACAG-TGGCATCGATATT-TGA-TAACATGTAAGACCAC
1 TGATTTCGTGTAAGACCACGT-CGGGAC-GTTGGCATCGAT-TTGAGATTAACATGTAAAACCAC
* *
53452354 GTATGGGACATTGGCAT
63 ATATGGGACATTAGCAT
53452371 TGTACAGGTT
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
85 45 0.69
86 17 0.26
87 3 0.05
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.30
Consensus pattern (85 bp):
TGATTTCGTGTAAGACCACGTCGGGACGTTGGCATCGATTTGAGATTAACATGTAAAACCACATA
TGGGACATTAGCATCATATA
Found at i:53456971 original size:27 final size:27
Alignment explanation
Indices: 53456939--53457028 Score: 135
Period size: 27 Copynumber: 3.3 Consensus size: 27
53456929 GATAAGTTAC
* *
53456939 AGAATTACCGAAATACCCCTGTAAGGT
1 AGAATTACCGAAATACCCTTGTAGGGT
53456966 AGAATTACCGAAATACCCTTGTAGGGT
1 AGAATTACCGAAATACCCTTGTAGGGT
* *
53456993 AGAATTACCGAGATACCCTTGTGGGGT
1 AGAATTACCGAAATACCCTTGTAGGGT
*
53457020 AAAATTACC
1 AGAATTACC
53457029 ATTTTGCCCC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AGAATTACCGAAATACCCTTGTAGGGT
Found at i:53457805 original size:26 final size:27
Alignment explanation
Indices: 53457776--53457835 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
53457766 CCACATATAT
*
53457776 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
53457802 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
53457829 ATATCTG
1 ATATCTG
53457836 GCAGCCTTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:53464507 original size:27 final size:26
Alignment explanation
Indices: 53464463--53464513 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
53464453 CTCGCTGCAA
*
53464463 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
53464490 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
53464514 AGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:53475516 original size:43 final size:42
Alignment explanation
Indices: 53475361--53475517 Score: 127
Period size: 43 Copynumber: 3.7 Consensus size: 42
53475351 TGTGATTTCG
* **
53475361 TGTAAGACCACGTTTGGGATGTTGGCATCA-ATTTGAGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCATATTT--GA-TTACA
** * * * * *
53475405 TGTAAGATTATGTCTGGGACATCGACATCATATTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTACA
** * * * *
53475447 TGTAAGACCTTGTCTAGGATAGTGGCATCGATACTTGATTACA
1 TGTAAGACCACGTCTGGGACATTGGCATC-ATATTTGATTACA
53475490 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
53475518 TGTATGAGCT
Statistics
Matches: 85, Mismatches: 26, Indels: 5
0.73 0.22 0.04
Matches are distributed among these distances:
42 24 0.28
43 35 0.41
44 22 0.26
45 4 0.05
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTACA
Found at i:53480122 original size:40 final size:41
Alignment explanation
Indices: 53480077--53480287 Score: 256
Period size: 40 Copynumber: 5.3 Consensus size: 41
53480067 CATTTGAATG
* * *
53480077 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-CGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
53480117 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* * *
53480157 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* *
53480197 TTATCCGGGCTAAGA-CCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
* *
53480236 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTG-TGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
53480276 ATATCC-GGCTAA
1 ATATCCGGGCTAA
53480288 ATTCCGAAGA
Statistics
Matches: 145, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 42 0.29
40 102 0.70
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGATT
Found at i:53480259 original size:79 final size:80
Alignment explanation
Indices: 53480077--53480287 Score: 327
Period size: 79 Copynumber: 2.7 Consensus size: 80
53480067 CATTTGAATG
* *
53480077 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGCGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
*
53480142 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGAT
* *
53480157 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGA-CCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
53480221 TTTGTGCGAGTTGAT
66 TTTGTGCGAGTTGAT
* * * *
53480236 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCC-GGCTAA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
53480288 ATTCCGAAGA
Statistics
Matches: 120, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 6 0.05
79 63 0.52
80 51 0.43
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGAT
Found at i:53488122 original size:40 final size:40
Alignment explanation
Indices: 53488077--53488287 Score: 259
Period size: 40 Copynumber: 5.3 Consensus size: 40
53488067 CATTTGAATG
* *
53488077 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
53488117 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
53488157 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
53488197 TTATCCGGGCTAAGA-TCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
53488236 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
53488276 ATATCC-GGCTAA
1 ATATCCGGGCTAA
53488288 ATTCCGAAGA
Statistics
Matches: 144, Mismatches: 22, Indels: 11
0.81 0.12 0.06
Matches are distributed among these distances:
39 41 0.28
40 101 0.70
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:53488296 original size:79 final size:80
Alignment explanation
Indices: 53488077--53488296 Score: 329
Period size: 79 Copynumber: 2.8 Consensus size: 80
53488067 CATTTGAATG
* *
53488077 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGATCCGAAGGCA
*
53488142 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGAT
* *
53488157 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGAT-CGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGATCCGAAGGCA
53488221 TTTGTGCGAGTTGAT
66 TTTGTGCGAGTTGAT
* * * *
53488236 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCC-GGCTAA-ATTCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGA-TCCGAAG
53488297 AAACTTGGGT
Statistics
Matches: 127, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
77 1 0.01
78 7 0.06
79 67 0.53
80 52 0.41
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGATCCGAAGGCA
TTTGTGCGAGTTGAT
Found at i:53494294 original size:42 final size:43
Alignment explanation
Indices: 53494237--53494332 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 43
53494227 TGAGATTTAT
* * *
53494237 GTGTAAGACCATGTCTGGGACA-TCAGCATC-ATATTTGATTTC
1 GTGTAAGACCATGTCTAGGACAGT-AGCATCGATACTTGATTAC
* *
53494279 GTGTAAGACCCTGTCTAGGACAGTGGCATCGATACTTGATTAC
1 GTGTAAGACCATGTCTAGGACAGTAGCATCGATACTTGATTAC
*
53494322 ATGTAAGACCA
1 GTGTAAGACCA
53494333 CATCTGGGAC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 25 0.56
43 20 0.44
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (43 bp):
GTGTAAGACCATGTCTAGGACAGTAGCATCGATACTTGATTAC
Found at i:53494349 original size:43 final size:42
Alignment explanation
Indices: 53494193--53494350 Score: 126
Period size: 43 Copynumber: 3.7 Consensus size: 42
53494183 ATGTGATTTT
* * *
53494193 GTGTAAGACCACGTCTGGGACGTTGGAATTGAT-TTGAGATTTAT
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATT--GA-TTAC
* * ** *
53494237 GTGTAAGACCATGTCTGGGACATCAGCATC-ATATTTGATTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATA-TTGATTAC
*
53494279 GTGTAAGACC-CTGTCTAGGACAG-TGGCATCGATACTTGATTAC
1 GTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATA-TTGATTAC
* *
53494322 ATGTAAGACCACATCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
53494351 TGTATGAACT
Statistics
Matches: 89, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
42 26 0.29
43 36 0.40
44 25 0.28
45 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTGATTAC
Found at i:53496781 original size:28 final size:28
Alignment explanation
Indices: 53496741--53496794 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
53496731 GGAGGAAGCA
* * *
53496741 TTCTGGTGGCTATGCTACAAATATCTGT
1 TTCTAGTGGCTATCCCACAAATATCTGT
53496769 TTCTAGTGGCTATCCCACAAATATCT
1 TTCTAGTGGCTATCCCACAAATATCT
53496795 ATTCTGGTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (28 bp):
TTCTAGTGGCTATCCCACAAATATCTGT
Found at i:53496813 original size:27 final size:26
Alignment explanation
Indices: 53496740--53496854 Score: 104
Period size: 27 Copynumber: 4.3 Consensus size: 26
53496730 TGGAGGAAGC
*
53496740 ATTCTGGTGGCTATGCTACAAATATCT
1 ATTCTGGTGGCTATGCCAC-AATATCT
* * *
53496767 GTTTCTAGTGGCTATCCCACAAATATCT
1 -ATTCTGGTGGCTATGCCAC-AATATCT
* *
53496795 ATTCTGGTGGCTCTGCCACAATATTT
1 ATTCTGGTGGCTATGCCACAATATCT
* * * *
53496821 GTATCTGGTGACTCTGTCACAATATCT
1 AT-TCTGGTGGCTATGCCACAATATCT
53496848 ATTCTGG
1 ATTCTGG
53496855 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 12 0.17
27 37 0.51
28 23 0.32
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (26 bp):
ATTCTGGTGGCTATGCCACAATATCT
Found at i:53498620 original size:12 final size:14
Alignment explanation
Indices: 53498603--53498634 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
53498593 TAAGACAGTT
53498603 GCTGAG-TTC-GAG
1 GCTGAGTTTCTGAG
53498615 GCTGAGTTTCTGAG
1 GCTGAGTTTCTGAG
53498629 GCTGAG
1 GCTGAG
53498635 CAGGTATGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 3 0.17
14 9 0.50
ACGTcount: A:0.16, C:0.16, G:0.41, T:0.28
Consensus pattern (14 bp):
GCTGAGTTTCTGAG
Found at i:53504508 original size:27 final size:27
Alignment explanation
Indices: 53504477--53504590 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
53504467 TGGAGGAAGC
53504477 GTTCTGGTGGCTATG-CACAAATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
*
53504503 GTTTCTGGTGGCTATGCCACAATTATCT
1 G-TTCTGGTGGCTATGCCACAAATATCT
*
53504531 GTTCTGGTGGCTTTGCCAC-AATATCT
1 GTTCTGGTGGCTATGCCACAAATATCT
* * * *
53504557 GTATCTAGTGACTCTGTCAC-AATATCT
1 GT-TCTGGTGGCTATGCCACAAATATCT
53504584 GTTCTGG
1 GTTCTGG
53504591 CAGCCATGAA
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
26 13 0.17
27 53 0.69
28 11 0.14
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (27 bp):
GTTCTGGTGGCTATGCCACAAATATCT
Found at i:53504578 original size:54 final size:53
Alignment explanation
Indices: 53504477--53504590 Score: 149
Period size: 54 Copynumber: 2.1 Consensus size: 53
53504467 TGGAGGAAGC
* * *
53504477 GTTCTGGTGGCTATGCACAAATATCTGTTTCTGGTGGCTATGCCACAATTATCT
1 GTTCTGGTGGCTATGCACAAATATCTGTATCTAGTGACTATGCCACAA-TATCT
* * *
53504531 GTTCTGGTGGCTTTGC-CACAATATCTGTATCTAGTGACTCTGTCACAATATCT
1 GTTCTGGTGGCTATGCACA-AATATCTGTATCTAGTGACTATGCCACAATATCT
53504584 GTTCTGG
1 GTTCTGG
53504591 CAGCCATGAA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 14 0.26
54 39 0.74
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (53 bp):
GTTCTGGTGGCTATGCACAAATATCTGTATCTAGTGACTATGCCACAATATCT
Found at i:53509250 original size:38 final size:39
Alignment explanation
Indices: 53509182--53509400 Score: 270
Period size: 39 Copynumber: 5.6 Consensus size: 39
53509172 GCTACTCGTT
* *
53509182 CAAATGCCTTCGGGACATAGCCCGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
53509221 CAAATGCCTTCGGGAC-TAGCCCGGTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
*
53509259 CAAATGCCTTCGGGACTTAACCCGG-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
* *
53509298 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
* * * *
53509336 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TATAGTAAC-TCGCA
53509377 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
53509401 ACATCATTCG
Statistics
Matches: 161, Mismatches: 10, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
37 2 0.01
38 64 0.40
39 66 0.41
40 18 0.11
41 11 0.07
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:53509295 original size:77 final size:79
Alignment explanation
Indices: 53509182--53509401 Score: 283
Period size: 77 Copynumber: 2.8 Consensus size: 79
53509172 GCTACTCGTT
* *
53509182 CAAATGCCTTCGGGACATAGCCC-GTTATAGTAACTCGCACAAATGCCTTCGGGAC-TAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
53509245 TA-TAGTAACTCGCA
66 AATTAGT-ACTCGCA
* *
53509259 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
53509322 AATTAGTACTCGCA
66 AATTAGTACTCGCA
* * * *
53509336 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
53509399 GGA
64 GGA
53509402 CATCATTCGA
Statistics
Matches: 125, Mismatches: 11, Indels: 12
0.84 0.07 0.08
Matches are distributed among these distances:
76 4 0.03
77 83 0.66
78 20 0.16
79 18 0.14
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTACTCGCA
Found at i:53510582 original size:54 final size:53
Alignment explanation
Indices: 53510518--53510685 Score: 270
Period size: 54 Copynumber: 3.2 Consensus size: 53
53510508 TATTAGTTTA
53510518 TTGCCCATGCTTCTTATTTTATTCTCCATTAACAAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATT-TCCATTAACAAACATGTTTCATGACATGTT
53510572 TTGCCCATGCTTCTTATTTT-TTT-CATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTCCATTAACA-AACATGTTTCATGACATGTT
*
53510624 TTGCCCATGC-TCTTATTTTATTTTTCCATTAACACACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTA--TTTCCATTAACAAACATGTTTCATGACATGTT
53510678 TTGCCCAT
1 TTGCCCAT
53510686 CATCCCTTGT
Statistics
Matches: 108, Mismatches: 1, Indels: 10
0.91 0.01 0.08
Matches are distributed among these distances:
51 17 0.16
52 31 0.29
53 2 0.02
54 50 0.46
55 8 0.07
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.45
Consensus pattern (53 bp):
TTGCCCATGCTTCTTATTTTATTTCCATTAACAAACATGTTTCATGACATGTT
Found at i:53517321 original size:40 final size:40
Alignment explanation
Indices: 53517277--53517419 Score: 173
Period size: 40 Copynumber: 3.6 Consensus size: 40
53517267 TACTTGCTCG
* * *
53517277 AATGCCTTTGGGACATAGCCCGGATATAGTAACTCACACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
* *
53517317 AATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
* **
53517357 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGTGCA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACA
*
53517397 AATGCCTTCGGGTCTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
53517420 TTATCATCCA
Statistics
Matches: 90, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.01
40 89 0.99
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
Found at i:53526896 original size:5 final size:5
Alignment explanation
Indices: 53526886--53526910 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
53526876 AAAACTTTGG
53526886 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
53526911 TGTAAATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:53536521 original size:39 final size:39
Alignment explanation
Indices: 53536467--53536626 Score: 257
Period size: 39 Copynumber: 4.1 Consensus size: 39
53536457 AATTATATTA
* *
53536467 CCAGCACAAACCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
53536506 CCTGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
53536545 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* * **
53536584 CCAGCACGAAGCCTGTGGGACTTTATCCCTCATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
53536623 CCAG
1 CCAG
53536627 TATCTTGCAT
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 113 1.00
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.23
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:53542641 original size:49 final size:49
Alignment explanation
Indices: 53542588--53542816 Score: 264
Period size: 49 Copynumber: 4.7 Consensus size: 49
53542578 ATATCAAAGT
* * *
53542588 CGATGCCATGTCCCAAATAGGTCTTACATTGACTTTCATATATTGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTGAGGC
* * *
53542637 CGATGTCGTGTCCCAGACAGGTCTTACACTGACTTTCATATATTGAGAC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTGAGGC
* * *
53542686 CGATGTCGTGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTGAGGC
* * * * * *
53542735 TGATGCCATGTCCTAGATAGGTCTTACACT-AGCTCTCATTTATTG-GTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTTTCATATATTGAG-GC
* * *
53542784 CGATTCCATATCCCAGACAGGTCTTACAATGAC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
53542817 AAACAACAAG
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
48 2 0.01
49 151 0.98
50 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATTGAGGC
Found at i:53542933 original size:46 final size:46
Alignment explanation
Indices: 53542868--53542983 Score: 193
Period size: 43 Copynumber: 2.6 Consensus size: 46
53542858 CTCGAGGCTG
53542868 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAAGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAAGCCA
* *
53542914 ATGCATGTCCCAGACATGTCTT---CTAGCTCTCGTCTTAAAGCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAAGCCA
53542957 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
53542984 GGTTCTCATA
Statistics
Matches: 65, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
43 41 0.63
46 24 0.37
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAAGCCA
Found at i:53545638 original size:23 final size:23
Alignment explanation
Indices: 53545590--53545638 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
53545580 CACACTCCCA
*
53545590 TGTGGAGGTAAAGCACAAACTTG
1 TGTGGAGGTAAAGCACAAACTCG
**
53545613 TGTGGAGGTAAAGCACACGCTCG
1 TGTGGAGGTAAAGCACAAACTCG
53545636 TGT
1 TGT
53545639 CCCTCACCCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.33, T:0.22
Consensus pattern (23 bp):
TGTGGAGGTAAAGCACAAACTCG
Found at i:53549385 original size:22 final size:22
Alignment explanation
Indices: 53549359--53549401 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
53549349 ATTTCCATCT
53549359 CAATTC-ATCAAAAAAATCATAA
1 CAATTCTA-CAAAAAAATCATAA
*
53549381 CAATTCTACAATAAAATCATA
1 CAATTCTACAAAAAAATCATA
53549402 TCATAAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.26
Consensus pattern (22 bp):
CAATTCTACAAAAAAATCATAA
Found at i:53558611 original size:40 final size:40
Alignment explanation
Indices: 53558537--53558758 Score: 356
Period size: 40 Copynumber: 5.6 Consensus size: 40
53558527 AACCCAAGTA
* * * *
53558537 CCTTCGGGATTTAG-CCGGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
53558576 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
53558616 CCTTCGGGATTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
53558656 CCTTCGGGACTTAGCCCAGATATAGCCACTAGCACTAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
53558696 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
53558736 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
53558759 CATTTGAATA
Statistics
Matches: 168, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 12 0.07
40 156 0.93
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:53566676 original size:40 final size:40
Alignment explanation
Indices: 53566614--53566795 Score: 264
Period size: 40 Copynumber: 4.6 Consensus size: 40
53566604 AACCCAAGTA
* *
53566614 CCTTCGGGAT-TTA-CCCGGATATAG-CAACTCGCACAAATA
1 CCTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATG
53566653 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
53566693 CCTTCGGGAT-TTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATG
* *
53566733 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
*
53566773 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGTCTTAGCCCGGATAT
53566796 CATTTGAATA
Statistics
Matches: 134, Mismatches: 4, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
38 1 0.01
39 11 0.08
40 120 0.90
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:53566746 original size:80 final size:80
Alignment explanation
Indices: 53566614--53566795 Score: 296
Period size: 80 Copynumber: 2.3 Consensus size: 80
53566604 AACCCAAGTA
* *
53566614 CCTTCGGGATTTA-CCCGGATATAGCAACTCGCACAAATACCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGATTTAGCCCGGATATAGCAACTAGCACAAATACCTTCGGGACTTAGCCCGGATATAG
*
53566678 TCACTAGCACAAATG
66 TAACTAGCACAAATG
*
53566693 CCTTCGGGATTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGATTTAGCCCGGATATAG-CAACTAGCACAAATACCTTCGGGACTTAGCCCGGATATA
53566757 GTAACTAGCACAAATG
65 GTAACTAGCACAAATG
*
53566773 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGATTTAGCCCGGATAT
53566796 CATTTGAATA
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
79 13 0.14
80 82 0.85
81 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGATTTAGCCCGGATATAGCAACTAGCACAAATACCTTCGGGACTTAGCCCGGATATAG
TAACTAGCACAAATG
Found at i:53572999 original size:93 final size:93
Alignment explanation
Indices: 53572887--53573058 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
53572877 CGCCCATAAG
* *
53572887 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53572952 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
53572980 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53573045 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
53573059 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:53573055 original size:46 final size:46
Alignment explanation
Indices: 53572880--53573055 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
53572870 TGTAACCCGC
* * *
53572880 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
53572926 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
53572976 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
53573019 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
53573056 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:53580501 original size:46 final size:46
Alignment explanation
Indices: 53580434--53580608 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
53580424 TGTAACCCGC
* *
53580434 CCATAAGCGAACTTGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
* *
53580480 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G--T-GTTCGCAT
* * ***
53580530 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
* *
53580573 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
53580609 ATGCTCCACC
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 59 0.56
47 27 0.26
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
Found at i:53580554 original size:93 final size:93
Alignment explanation
Indices: 53580441--53580612 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
53580431 CGCCCATAAG
* * ***
53580441 CGAACTTGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
53580506 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
53580534 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
53580599 ATGAGTTCGGATGC
66 ACGAGTTCGGATGC
53580613 TCCACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:53588554 original size:28 final size:29
Alignment explanation
Indices: 53588510--53588597 Score: 124
Period size: 29 Copynumber: 3.1 Consensus size: 29
53588500 CATAACTGTA
*
53588510 AATGTGTTTTGGGCCTAAT-GGTCATATG
1 AATGTGATTTGGGCCTAATGGGTCATATG
* *
53588538 AATGTGATTTGGACCTAATGGGTCATATA
1 AATGTGATTTGGGCCTAATGGGTCATATG
* *
53588567 AATGTGATTTGGGCCTCATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGTCATATG
53588596 AA
1 AA
53588598 AGAGATTAAG
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
28 17 0.33
29 35 0.67
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.34
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGTCATATG
Found at i:53588623 original size:57 final size:57
Alignment explanation
Indices: 53588508--53588616 Score: 130
Period size: 57 Copynumber: 1.9 Consensus size: 57
53588498 AGCATAACTG
* * * * **
53588508 TAAATGTGTTTTGGGCCTAATGGTCATATGAATGTGATTTGGACCTAATGGGTCATA
1 TAAATGTGATTTGGGCCTAATGGCCATATGAAAGAGATTAAGACCTAATGGGTCATA
* *
53588565 TAAATGTGATTTGGGCCTCATGGGCCATATGAAAGAGATTAAG-CCTAGTGGG
1 TAAATGTGATTTGGGCCTAAT-GGCCATATGAAAGAGATTAAGACCTAATGGG
53588617 CTATATACAG
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
57 27 0.63
58 16 0.37
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.32
Consensus pattern (57 bp):
TAAATGTGATTTGGGCCTAATGGCCATATGAAAGAGATTAAGACCTAATGGGTCATA
Found at i:53592644 original size:29 final size:28
Alignment explanation
Indices: 53592578--53592664 Score: 111
Period size: 29 Copynumber: 3.0 Consensus size: 28
53592568 AGCATGACTG
* *
53592578 TAAATGTGTTTTGGTCCTAATGGCCATA
1 TAAATGTGATTTGGGCCTAATGGCCATA
* *
53592606 TGAATATGATTTGGGCCTAATAGGCCATA
1 TAAATGTGATTTGGGCCTAAT-GGCCATA
*
53592635 TAAATGTGATTTGGGCCTCATGGGCCATA
1 TAAATGTGATTTGGGCCTAAT-GGCCATA
53592664 T
1 T
53592665 GAAAGAGATT
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
28 17 0.34
29 33 0.66
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.34
Consensus pattern (28 bp):
TAAATGTGATTTGGGCCTAATGGCCATA
Found at i:53592674 original size:29 final size:29
Alignment explanation
Indices: 53592587--53592678 Score: 102
Period size: 29 Copynumber: 3.2 Consensus size: 29
53592577 GTAAATGTGT
*
53592587 TTTGGTCCTAAT-GGCCATATGAATA-TGA
1 TTTGGGCCTAATAGGCCATATGAA-AGTGA
53592615 TTTGGGCCTAATAGGCCATAT-AAATGTGA
1 TTTGGGCCTAATAGGCCATATGAAA-GTGA
* * *
53592644 TTTGGGCCTCATGGGCCATATGAAAGAGA
1 TTTGGGCCTAATAGGCCATATGAAAGTGA
53592673 -TTGGGC
1 TTTGGGC
53592679 TAGTGGGCTA
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
27 1 0.02
28 19 0.34
29 33 0.59
30 3 0.05
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (29 bp):
TTTGGGCCTAATAGGCCATATGAAAGTGA
Found at i:53597217 original size:40 final size:40
Alignment explanation
Indices: 53597172--53597310 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 40
53597162 TGACAAATCA
*
53597172 GCTATATATGGCACTTAATGTGCGATTTGACATAGCTTCG
1 GCTATATATGGCACTTAATGTGCGATTTGAGATAGCTTCG
*
53597212 GCTATATATGGCACTT-A-GT---A-TCGAGATAGCTTCG
1 GCTATATATGGCACTTAATGTGCGATTTGAGATAGCTTCG
* * * * *
53597246 ACTATATATGGCACTTAGTTTACGATTTGAGATTGCTTCG
1 GCTATATATGGCACTTAATGTGCGATTTGAGATAGCTTCG
* * * *
53597286 GCTATGTACGACACTTAGTGTGCGA
1 GCTATATATGGCACTTAATGTGCGA
53597311 GATATCAAGC
Statistics
Matches: 80, Mismatches: 13, Indels: 12
0.76 0.12 0.11
Matches are distributed among these distances:
34 27 0.34
35 1 0.01
36 1 0.01
38 2 0.03
39 2 0.03
40 47 0.59
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (40 bp):
GCTATATATGGCACTTAATGTGCGATTTGAGATAGCTTCG
Found at i:53597272 original size:74 final size:75
Alignment explanation
Indices: 53597173--53597314 Score: 196
Period size: 74 Copynumber: 1.9 Consensus size: 75
53597163 GACAAATCAG
* * *
53597173 CTATATATGGCACTTAATGTGCGATTTGACATAGCTTCGGCTATATATGGCACTTAGTAT-CGAG
1 CTATATATGGCACTTAATGTACGATTTGACATAGCTTCGGCTATATACGACACTTAGTATGCGAG
53597237 ATAGCTTCGA
66 ATAGCTTCGA
* * * * * *
53597247 CTATATATGGCACTTAGTTTACGATTTGAGATTGCTTCGGCTATGTACGACACTTAGTGTGCGAG
1 CTATATATGGCACTTAATGTACGATTTGACATAGCTTCGGCTATATACGACACTTAGTATGCGAG
53597312 ATA
66 ATA
53597315 TCAAGCATTC
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
74 51 0.88
75 7 0.12
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.35
Consensus pattern (75 bp):
CTATATATGGCACTTAATGTACGATTTGACATAGCTTCGGCTATATACGACACTTAGTATGCGAG
ATAGCTTCGA
Found at i:53598024 original size:24 final size:24
Alignment explanation
Indices: 53597996--53598044 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
53597986 TTTGGTAGAG
53597996 TAAGATTTGAAGTTATAAGCATGT
1 TAAGATTTGAAGTTATAAGCATGT
53598020 TAAGATTTGAAGTTATAAGCATGT
1 TAAGATTTGAAGTTATAAGCATGT
53598044 T
1 T
53598045 GGAATATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.20, T:0.39
Consensus pattern (24 bp):
TAAGATTTGAAGTTATAAGCATGT
Found at i:53601272 original size:29 final size:29
Alignment explanation
Indices: 53601228--53601296 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
53601218 TCGAAGTACT
* * *
53601228 GATAT-CATGGCTCGAAGCCAAATTAGTC
1 GATATGCATGGCCCGAAGCAAAATCAGTC
53601256 GATATGCATGGCCCGAAGCAAAATCAGTC
1 GATATGCATGGCCCGAAGCAAAATCAGTC
53601285 GATATGCATGGC
1 GATATGCATGGC
53601297 GTGAAGTCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 5 0.14
29 32 0.86
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (29 bp):
GATATGCATGGCCCGAAGCAAAATCAGTC
Found at i:53601302 original size:29 final size:27
Alignment explanation
Indices: 53601228--53601312 Score: 91
Period size: 29 Copynumber: 3.0 Consensus size: 27
53601218 TCGAAGTACT
*
53601228 GATAT-CATGGCTCGAAGCCAAATTAGTC
1 GATATGCATGGCT-GAAG-CAAATCAGTC
*
53601256 GATATGCATGGCCCGAAGCAAAATCAGTC
1 GATATGCATGG-CTGAAGC-AAATCAGTC
53601285 GATATGCATGGCGTGAAGTCAAATCAGT
1 GATATGCATGGC-TGAAG-CAAATCAGT
53601313 ATAACTCGCA
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
28 7 0.14
29 40 0.82
30 2 0.04
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (27 bp):
GATATGCATGGCTGAAGCAAATCAGTC
Found at i:53608140 original size:168 final size:167
Alignment explanation
Indices: 53607849--53608184 Score: 548
Period size: 168 Copynumber: 2.0 Consensus size: 167
53607839 AATAGGCAAA
** * *
53607849 TTCATCATTTAAAGAGGCATACCATTACATGCATAGGTGGTTATAAACTTACCTTGGATTAACTT
1 TTCATCATTTAAAGAGGCATACCATTACATGCATAACTGGTTATAAACCTACCTTGGATTAAATT
* * *
53607914 TGCAATAGCAACTTTTGATAACATATTCATAACATAACACATGTGTATATGTATATCATAATAAT
66 GGCAATAGCAACCTTTGATAACAAATTCATAACATAACACATGTGTATATGTATATCATAATAAT
53607979 CTACTTAGTAATACCAAAATGAACCAATACTAGCCAT
131 CTACTTAGTAATACCAAAATGAACCAATACTAGCCAT
*
53608016 TTCATCCTTTAACA-AGGCATACCATTACATGCATAACTGGTTATAAACCTACCTTGGATTAAAT
1 TTCATCATTTAA-AGAGGCATACCATTACATGCATAACTGGTTATAAACCTACCTTGGATTAAAT
53608080 TAGGCAATAGCAACCTTTGATAACAAATTCATAACATAACACATGTGTATATGTATATCATAATA
65 T-GGCAATAGCAACCTTTGATAACAAATTCATAACATAACACATGTGTATATGTATATCATAATA
* * *
53608145 ATCTACTTAGTCATACCAAAATGAACCATTACTAGTCAT
129 ATCTACTTAGTAATACCAAAATGAACCAATACTAGCCAT
53608184 T
1 T
53608185 CCAATGGCTA
Statistics
Matches: 156, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
167 58 0.37
168 98 0.63
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.32
Consensus pattern (167 bp):
TTCATCATTTAAAGAGGCATACCATTACATGCATAACTGGTTATAAACCTACCTTGGATTAAATT
GGCAATAGCAACCTTTGATAACAAATTCATAACATAACACATGTGTATATGTATATCATAATAAT
CTACTTAGTAATACCAAAATGAACCAATACTAGCCAT
Found at i:53611517 original size:11 final size:11
Alignment explanation
Indices: 53611489--53611520 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
53611479 AAATCCGAGG
*
53611489 TTTTAAAATTA
1 TTTTAATATTA
53611500 TTTTAATATTA
1 TTTTAATATTA
53611511 TTTTAATATT
1 TTTTAATATT
53611521 GGTAATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAATATTA
Found at i:53612251 original size:40 final size:40
Alignment explanation
Indices: 53612177--53612253 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
53612167 ACCATGTTTG
* * * *
53612177 GCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATATAAA
1 GCACTTAGTGTGCGACTGGAGATAACTTCAGCTATATAAA
53612217 GCACTTAGTGTGCGAACTGGA-ATAACTTCAGCTATAT
1 GCACTTAGTGTGCG-ACTGGAGATAACTTCAGCTATAT
53612254 GTGGCACTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 28 0.88
41 4 0.12
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (40 bp):
GCACTTAGTGTGCGACTGGAGATAACTTCAGCTATATAAA
Found at i:53612261 original size:40 final size:40
Alignment explanation
Indices: 53612175--53612268 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 40
53612165 CGACCATGTT
* * * *
53612175 TGGCACTTAGTGTGCGATTTGAGATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGACTGGAGATAACTTCAGCTATATA
** *
53612215 AAGCACTTAGTGTGCGAACTGGA-ATAACTTCAGCTATATG
1 TGGCACTTAGTGTGCG-ACTGGAGATAACTTCAGCTATATA
*
53612255 TGGCACTAAGTGTG
1 TGGCACTTAGTGTG
53612269 TGATACCGGG
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
40 39 0.91
41 4 0.09
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGACTGGAGATAACTTCAGCTATATA
Found at i:53617951 original size:8 final size:7
Alignment explanation
Indices: 53617903--53617959 Score: 60
Period size: 7 Copynumber: 7.9 Consensus size: 7
53617893 ATACTTACAA
53617903 GTTTAGG
1 GTTTAGG
53617910 GTTTAGG
1 GTTTAGG
*
53617917 GTTTAGT
1 GTTTAGG
53617924 GTTTAGTG
1 GTTTAG-G
* *
53617932 TTTTAAG
1 GTTTAGG
*
53617939 ATTTAGG
1 GTTTAGG
53617946 GTTTTAGG
1 G-TTTAGG
53617954 GTTTAG
1 GTTTAG
53617960 TTTCATACTT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
7 30 0.73
8 11 0.27
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.49
Consensus pattern (7 bp):
GTTTAGG
Found at i:53617958 original size:15 final size:15
Alignment explanation
Indices: 53617904--53617959 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
53617894 TACTTACAAG
53617904 TTTAGGGTTTAGGG-
1 TTTAGGGTTTAGGGT
* *
53617918 TTTAGTGTTTAGTGT
1 TTTAGGGTTTAGGGT
* *
53617933 TTTAAGATTTAGGGT
1 TTTAGGGTTTAGGGT
53617948 TTTAGGGTTTAG
1 TTTAGGGTTTAG
53617960 TTTCATACTT
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
14 12 0.36
15 21 0.64
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (15 bp):
TTTAGGGTTTAGGGT
Found at i:53622699 original size:13 final size:13
Alignment explanation
Indices: 53622681--53622706 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
53622671 ACATAAACAA
53622681 ATTCTTTACATAC
1 ATTCTTTACATAC
53622694 ATTCTTTACATAC
1 ATTCTTTACATAC
53622707 GGTCGTGTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (13 bp):
ATTCTTTACATAC
Found at i:53623656 original size:22 final size:23
Alignment explanation
Indices: 53623616--53623661 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
53623606 AATAAAAAAC
*
53623616 TAAGCATAATTTTTATTTTATAT
1 TAAGCATAACTTTTATTTTATAT
* *
53623639 TAAGC-TAACTTTTGTTTTCTAT
1 TAAGCATAACTTTTATTTTATAT
53623661 T
1 T
53623662 CACTACATCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.28, C:0.09, G:0.07, T:0.57
Consensus pattern (23 bp):
TAAGCATAACTTTTATTTTATAT
Found at i:53626361 original size:21 final size:21
Alignment explanation
Indices: 53626335--53626379 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
53626325 AATTACTTTG
53626335 TAAAAGTTGTTTATCTATGAA
1 TAAAAGTTGTTTATCTATGAA
53626356 TAAAAGTTGTTTATCTATGAA
1 TAAAAGTTGTTTATCTATGAA
53626377 TAA
1 TAA
53626380 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.42
Consensus pattern (21 bp):
TAAAAGTTGTTTATCTATGAA
Found at i:53630484 original size:34 final size:35
Alignment explanation
Indices: 53630433--53630504 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
53630423 ATTCTGTAGT
*
53630433 TAGGGTAATACTGAAACTGTAGAA-ACTGAGACAG
1 TAGGGTAAAACTGAAACTGTAGAAGACTGAGACAG
* *
53630467 TAGGG-AAAACTGAAAACTTTAGAAGACTGAGACTG
1 TAGGGTAAAACTG-AAACTGTAGAAGACTGAGACAG
53630502 TAG
1 TAG
53630505 CTAGGATACG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 6 0.18
34 15 0.45
35 12 0.36
ACGTcount: A:0.42, C:0.11, G:0.26, T:0.21
Consensus pattern (35 bp):
TAGGGTAAAACTGAAACTGTAGAAGACTGAGACAG
Found at i:53643752 original size:46 final size:46
Alignment explanation
Indices: 53643699--53643789 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
53643689 TATATATACA
* * *
53643699 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
* * *
53643745 CATCTCATACACATTTCGCATTAACCATTCGGCTTTCCCACATAT
1 CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATAT
53643790 ATACACATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAACCATTCGGCTTTACCACATATC
Found at i:53643881 original size:94 final size:94
Alignment explanation
Indices: 53643769--53644282 Score: 686
Period size: 94 Copynumber: 5.5 Consensus size: 94
53643759 TTCGCATTAA
* ** ** * * * **
53643769 CCATTCGGCTTTCCCACATATATACACATCCACGTTCATCACATTGGCCATTCTGCCTTATCATT
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
** *
53643834 TGTATGCATGTTCACATTTATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
* * * *
53643863 CCATTCTGCCTTATCACATATATGCATGTTCATATTCTTCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
53643928 CATATGCATGTTCACATTCATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
53643957 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* *
53644022 TATATGCATGTTCATATTCATCACATTGG
66 CATATGCATGTTCACATTCATCACATTGG
* *
53644051 CCATTCGGCCTTATCACACATATACATGTTCACATTCATCACATTGGCCATTCGGTCTTATCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* **
53644116 CAAATGCATGTTCACATTCATCACATTTT
66 CATATGCATGTTCACATTCATCACATTGG
* * * * *
53644145 CCATTCGGCCTTAGCACACATATGCATGTTCACATTCATCACATTTGCCATTCGGCCTTAGCACA
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
* * *
53644210 CAAATGCATCTTCACATTCATCACATTTG
66 CATATGCATGTTCACATTCATCACATTGG
* * * ** *
53644239 CCATTCGGCCTTAGCTCATGTATACACATTCACATCCATCACAT
1 CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
53644283 AAAATCCTAA
Statistics
Matches: 376, Mismatches: 44, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 376 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (94 bp):
CCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
CATATGCATGTTCACATTCATCACATTGG
Found at i:53643974 original size:22 final size:22
Alignment explanation
Indices: 53643947--53644022 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
53643937 GTTCACATTC
53643947 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
*** * *
53643969 ATCACATATATACATGTTC-ACATT
1 ATCACAT-TGGCCA--TTCGGCCTT
53643993 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
53644016 ATCACAT
1 ATCACAT
53644023 ATATGCATGT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 17 0.44
23 6 0.15
24 6 0.15
25 10 0.26
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:53644211 original size:24 final size:24
Alignment explanation
Indices: 53644137--53644211 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
53644127 TCACATTCAT
*
53644137 CACATTTTCCATTCGGCCTTAGCA
1 CACATTTGCCATTCGGCCTTAGCA
* * *
53644161 CACATATG-CATGTTC-ACATT--CA
1 CACATTTGCCA--TTCGGCCTTAGCA
53644183 TCACATTTGCCATTCGGCCTTAGCA
1 -CACATTTGCCATTCGGCCTTAGCA
53644208 CACA
1 CACA
53644212 AATGCATCTT
Statistics
Matches: 37, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
22 5 0.14
23 12 0.32
24 15 0.41
25 5 0.14
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.31
Consensus pattern (24 bp):
CACATTTGCCATTCGGCCTTAGCA
Found at i:53644253 original size:47 final size:47
Alignment explanation
Indices: 53643803--53644251 Score: 673
Period size: 47 Copynumber: 9.6 Consensus size: 47
53643793 CACATCCACG
* ****
53643803 TTCATCACATTGGCCATTCTGCCTTATCATTTGTATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * * *
53643850 TTTATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
53643897 TTCTTCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
53643944 TTCATCACATTGGCCATTCGGCCTTATCACATATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
53643991 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
53644038 TTCATCACATTGGCCATTCGGCCTTATCACACATATACATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* *
53644085 TTCATCACATTGGCCATTCGGTCTTATCACACAAATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
** *
53644132 TTCATCACATTTTCCATTCGGCCTTAGCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
* * * *
53644179 TTCATCACATTTGCCATTCGGCCTTAGCACACAAATGCATCTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
53644226 TTCATCACATTTGCCATTCGGCCTTA
1 TTCATCACATTGGCCATTCGGCCTTA
53644252 GCTCATGTAT
Statistics
Matches: 373, Mismatches: 29, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 373 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:53647008 original size:22 final size:23
Alignment explanation
Indices: 53646963--53647008 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
53646953 CAAAATACCC
53646963 TTAATGCATAACTTAAAAATTTT
1 TTAATGCATAACTTAAAAATTTT
53646986 TTAATGCATAACTTAAAAATTTT
1 TTAATGCATAACTTAAAAATTTT
53647009 ACCTAGCCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.43
Consensus pattern (23 bp):
TTAATGCATAACTTAAAAATTTT
Found at i:53648013 original size:27 final size:27
Alignment explanation
Indices: 53647983--53648098 Score: 151
Period size: 27 Copynumber: 4.3 Consensus size: 27
53647973 TAGTTTACCA
*
53647983 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
53648010 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
53648037 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
53648064 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
53648091 AATTACCA
1 AATTACCA
53648099 TTTTACCCCT
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:53648108 original size:54 final size:54
Alignment explanation
Indices: 53647991--53648093 Score: 172
Period size: 54 Copynumber: 1.9 Consensus size: 54
53647981 CAAATTACTA
53647991 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCG
* * *
53648045 AAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTGGGGTA-AAAT
1 AAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAAAT
53648094 TACCATTTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
53 4 0.09
54 42 0.91
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.23
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCG
Found at i:53648351 original size:27 final size:26
Alignment explanation
Indices: 53648321--53648403 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
53648311 TAGAGGAAGC
53648321 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
53648348 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
53648374 GTATCTGGTGACTTTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
53648401 GTT
1 GTT
53648404 GACCAATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:53648543 original size:22 final size:22
Alignment explanation
Indices: 53648511--53648569 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
53648501 CCCGTTATCG
*
53648511 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
53648533 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
53648555 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
53648570 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:53648679 original size:32 final size:32
Alignment explanation
Indices: 53648632--53648713 Score: 85
Period size: 32 Copynumber: 2.6 Consensus size: 32
53648622 GATCATATTT
* * * *
53648632 ACTGAAGGCTGTGTGCC-AATTGTATTACCGTC
1 ACTGATGGCTATGTGCCAAAGT-TATTACAGTC
*
53648664 ACTGATGGCTATGTGCCAAAGTTATTACAGTT
1 ACTGATGGCTATGTGCCAAAGTTATTACAGTC
* *
53648696 ATTGATGGCTTTGTGCCA
1 ACTGATGGCTATGTGCCA
53648714 CGTATTCTGT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
32 39 0.93
33 3 0.07
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (32 bp):
ACTGATGGCTATGTGCCAAAGTTATTACAGTC
Found at i:53648815 original size:27 final size:26
Alignment explanation
Indices: 53648727--53648833 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 26
53648717 ATTCTGTTAA
* *
53648727 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
* * *
53648754 GTGGCTATACCATAAATATCTGTTCTG
1 GTGGCTCTGCCA-CAATATCTGTTCTG
53648781 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* * * *
53648808 GTGACTCT-TCACAATCTCTATTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
53648833 G
1 G
53648834 CAGCCATACT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
25 5 0.07
26 19 0.28
27 36 0.54
28 7 0.10
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:53650558 original size:16 final size:16
Alignment explanation
Indices: 53650537--53650571 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
53650527 TAGTTGGTCT
53650537 TGAATTTAAACTCTGA
1 TGAATTTAAACTCTGA
53650553 TGAATTTAAACTCTGA
1 TGAATTTAAACTCTGA
53650569 TGA
1 TGA
53650572 TTGAGGGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (16 bp):
TGAATTTAAACTCTGA
Found at i:53650731 original size:9 final size:9
Alignment explanation
Indices: 53650717--53650741 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
53650707 GCGTCGGCTA
53650717 AGAGTGCTC
1 AGAGTGCTC
53650726 AGAGTGCTC
1 AGAGTGCTC
53650735 AGAGTGC
1 AGAGTGC
53650742 GGATTAACTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.20, G:0.36, T:0.20
Consensus pattern (9 bp):
AGAGTGCTC
Found at i:53651131 original size:27 final size:26
Alignment explanation
Indices: 53651042--53651147 Score: 86
Period size: 27 Copynumber: 4.0 Consensus size: 26
53651032 CAAATTACTA
* * *
53651042 AAATACCCCTATAAGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTAC-G
* * *
53651069 AAATACCCTTGTAGTGTATAAATACCG
1 AAATACCCTTGTAGGGTAGAATTA-CG
53651096 AAATACCCTTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTA-CG
* * * * *
53651123 AGATGCCCTTATGGGGTAAAATTAC
1 AAATACCCTTGTAGGGTAGAATTAC
53651148 TATTTTACCC
Statistics
Matches: 63, Mismatches: 15, Indels: 3
0.78 0.19 0.04
Matches are distributed among these distances:
26 1 0.02
27 61 0.97
28 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (26 bp):
AAATACCCTTGTAGGGTAGAATTACG
Found at i:53651415 original size:27 final size:26
Alignment explanation
Indices: 53651372--53651451 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
53651362 TGGAGGAAGC
*
53651372 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGACTATGCCAC-AATATCT
* *
53651399 GTTCTGGTGCCTCTGCCACAATATCT
1 GTTCTGGTGACTATGCCACAATATCT
* *
53651425 GTATCTGGTGACTTTGTCACAATATCT
1 GT-TCTGGTGACTATGCCACAATATCT
53651452 ATTGACCGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 9 0.19
27 38 0.81
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGACTATGCCACAATATCT
Found at i:53651545 original size:20 final size:20
Alignment explanation
Indices: 53651498--53651545 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
53651488 CGAAGGCTGT
*
53651498 GTGCCGTTATTGTGGGCTTC
1 GTGCCGATATTGTGGGCTTC
** * *
53651518 GTATCGATATTGTTGGTTTC
1 GTGCCGATATTGTGGGCTTC
53651538 GTGCCGAT
1 GTGCCGAT
53651546 TATAGACCCG
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.10, C:0.17, G:0.31, T:0.42
Consensus pattern (20 bp):
GTGCCGATATTGTGGGCTTC
Found at i:53651594 original size:22 final size:22
Alignment explanation
Indices: 53651562--53651620 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
53651552 CCCGTTATCA
*
53651562 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
53651584 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
53651606 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
53651621 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:53651808 original size:27 final size:26
Alignment explanation
Indices: 53651778--53651885 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
53651768 ATTCTGTTAA
* *
53651778 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
* *
53651805 GTGGCTATGCTACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
*
53651832 GTGGCTCTGCCACAATATCTATATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
53651859 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
53651885 G
1 G
53651886 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 13 0.19
27 50 0.71
28 7 0.10
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:53654102 original size:27 final size:27
Alignment explanation
Indices: 53654071--53654185 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
53654061 TAGTTTACCA
* *
53654071 AATTACTGAAATACCGC-TATAGGGTAG
1 AATTACCGAAATACC-CTTGTAGGGTAG
*
53654098 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
53654125 AAATACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
53654152 AATTACCGAGATACCCTTGT-GGGATAA
1 AATTACCGAAATACCCTTGTAGGG-TAG
53654179 AATTACC
1 AATTACC
53654186 ATTTTACCCC
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 4 0.05
27 74 0.95
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:53654486 original size:27 final size:26
Alignment explanation
Indices: 53654409--53654471 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 26
53654399 TGGAGGAAGC
*
53654409 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
53654436 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
53654462 GTATCTGGTG
1 GT-TCTGGTG
53654472 TCTTTGTCAC
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
26 9 0.26
27 25 0.74
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:53654844 original size:27 final size:27
Alignment explanation
Indices: 53654814--53654921 Score: 130
Period size: 27 Copynumber: 4.0 Consensus size: 27
53654804 ATTCTGTTAA
* * *
53654814 GTGGCTTTGCCACATTATCTGTTTCTT
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
53654841 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
53654868 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
53654895 GTGACTCTGTCACAATATCTG-TTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
53654921 G
1 G
53654922 CAGCCATGTT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 13 0.18
27 51 0.72
28 7 0.10
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:53654872 original size:54 final size:53
Alignment explanation
Indices: 53654814--53654921 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 53
53654804 ATTCTGTTAA
* * * * *
53654814 GTGGCTTTGCCACATTATCTGTTTCTTGTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCAC-AATATCTGTTCTG
* *
53654868 GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
53654921 G
1 G
53654922 CAGCCATGTT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 14 0.30
54 33 0.70
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTGTTCTG
Found at i:53662006 original size:40 final size:40
Alignment explanation
Indices: 53661855--53661999 Score: 154
Period size: 40 Copynumber: 3.6 Consensus size: 40
53661845 TGAATGATGT
* * *
53661855 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
* * *
53661894 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
*
53661935 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-A
*
53661975 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
53662000 AACGAGTAGC
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
39 3 0.03
40 75 0.85
41 10 0.11
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:53662018 original size:80 final size:80
Alignment explanation
Indices: 53661854--53662005 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 80
53661844 TTGAATGATG
* *
53661854 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
53661919 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
53661934 TCCGGGCTAAGTCCCGAAGGCAATTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-ATTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
53661997 TTGAACGAG
64 TTGAACGAG
53662006 TAGCTATATC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
79 1 0.02
80 54 0.89
81 6 0.10
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:53676550 original size:27 final size:27
Alignment explanation
Indices: 53676516--53676715 Score: 274
Period size: 27 Copynumber: 7.4 Consensus size: 27
53676506 TGGATAAGTT
* *
53676516 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
53676543 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
***
53676570 GTAGAATTATTAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
53676597 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
53676624 ATAGGATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
53676651 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
53676678 GTAAAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
53676705 GTAAAATTACC
1 GTAGAATTACC
53676716 ATTTTGCCCT
Statistics
Matches: 153, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:53676752 original size:27 final size:25
Alignment explanation
Indices: 53676716--53676768 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
53676706 TAAAATTACC
53676716 ATTTTGCCCTAG-GACGTTAAATGACT
1 ATTTTGCCCTAGTG-CG-TAAATGACT
*
53676742 ATTTTGCCCCTCGTGCGTAAATGACT
1 ATTTTG-CCCTAGTGCGTAAATGACT
53676768 A
1 A
53676769 ACTTGTGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 16 0.67
27 7 0.29
28 1 0.04
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (25 bp):
ATTTTGCCCTAGTGCGTAAATGACT
Found at i:53678856 original size:54 final size:55
Alignment explanation
Indices: 53678734--53678905 Score: 296
Period size: 54 Copynumber: 3.1 Consensus size: 55
53678724 ACAAGGGATG
*
53678734 ATGGGCAAAACATGTCAT-AAACATGTGTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGT-TGTGTTAATGG-AGAATAAAATAAGAAGC
53678790 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAAT-GAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAGAATAAAATAAGAAGC
53678844 ATGGGCAAAACATGTCATGAAACATGTT-TGTTAATGGAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAGAATAAAATAAGAAGC
53678898 ATGGGCAA
1 ATGGGCAA
53678906 TAAACTAATA
Statistics
Matches: 113, Mismatches: 1, Indels: 6
0.94 0.01 0.05
Matches are distributed among these distances:
53 7 0.06
54 70 0.62
55 1 0.01
56 27 0.24
57 8 0.07
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (55 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAGAATAAAATAAGAAGC
Found at i:53680144 original size:76 final size:78
Alignment explanation
Indices: 53680032--53680213 Score: 198
Period size: 76 Copynumber: 2.3 Consensus size: 78
53680022 TAAGTGAACC
* **
53680032 ATATCCGGACTAAGAT-CCGAAGGGCATTTGTACGAGTTACTA-ATTCC-GGCTAAAG-CCCGAA
1 ATATCCGGGCTAAG-TCCCGAA-GGCATTTGTACGAG-TACTATACACCGGGCT--AGTCCCGAA
53680093 GGCATTG-GTGCAG-TACT
61 GGCATTGTG-GCAGTTACT
*
53680110 ATATCCGGG-TAAGTCCCGAAGGCATTTGTGCGAGTACTATACACCGGGCTAGTCCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTACTATACACCGGGCTAGTCCCGAAGGCAT
*
53680174 TGTGGGAGTTACT
66 TGTGGCAGTTACT
* *
53680187 ATATCCGGGCTATGTCCCAAAGGCATT
1 ATATCCGGGCTAAGTCCCGAAGGCATT
53680214 GAAGAGTAGC
Statistics
Matches: 90, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
75 7 0.08
76 33 0.37
77 27 0.30
78 23 0.26
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (78 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTACTATACACCGGGCTAGTCCCGAAGGCAT
TGTGGCAGTTACT
Found at i:53680166 original size:39 final size:38
Alignment explanation
Indices: 53680002--53680213 Score: 168
Period size: 39 Copynumber: 5.4 Consensus size: 38
53679992 ATGTCCGCTA
* * * *
53680002 AGTCCCGAAGGCTTTTGTGCTAAGTGAACCATATCCGGACT
1 AGTCCCGAAGGCATTTGTGC-GAGT--ACTATATCCGGGCT
*
53680043 AAGAT-CCGAAGGGCATTTGTACGAGTTACTA-ATTCC-GGCT
1 -AG-TCCCGAA-GGCATTTGTGCGAG-TACTATA-TCCGGGCT
*
53680083 AAAG-CCCGAAGGCATTGGTGC-AGTACTATATCCGGG-T
1 --AGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCT
*
53680120 AAGTCCCGAAGGCATTTGTGCGAGTACTATACACCGGGCT
1 -AGTCCCGAAGGCATTTGTGCGAGTACTATA-TCCGGGCT
*
53680160 AGTCCCGAAGGCA-TTGTGGGAGTTACTATATCCGGGCT
1 AGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCT
*
53680198 ATGTCCCAAAGGCATT
1 A-GTCCCGAAGGCATT
53680214 GAAGAGTAGC
Statistics
Matches: 143, Mismatches: 12, Indels: 32
0.76 0.06 0.17
Matches are distributed among these distances:
36 3 0.02
37 25 0.17
38 30 0.21
39 45 0.31
40 11 0.08
41 9 0.06
42 9 0.06
43 11 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (38 bp):
AGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCT
Found at i:53680227 original size:38 final size:37
Alignment explanation
Indices: 53680087--53680230 Score: 150
Period size: 39 Copynumber: 3.8 Consensus size: 37
53680077 CCGGCTAAAG
*
53680087 CCCGAAGGCATTGGTG-CAGTACTATATCCGGG-TAAGT
1 CCCGAAGGCATT-GTGAGAGTACTATATCCGGGCT-AGT
* *
53680124 CCCGAAGGCATTTGTGCGAGTACTATACACCGGGCTAGT
1 CCCGAAGGCA-TTGTGAGAGTACTATA-TCCGGGCTAGT
*
53680163 CCCGAAGGCATTGTGGGAGTTACTATATCCGGGCTATGT
1 CCCGAAGGCATTGTGAGAG-TACTATATCCGGGCTA-GT
* *
53680202 CCCAAAGGCATTG-AAGAGTAGCTATATCC
1 CCCGAAGGCATTGTGAGAGTA-CTATATCC
53680231 AGTTAAATTC
Statistics
Matches: 93, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
37 15 0.16
38 38 0.41
39 39 0.42
40 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (37 bp):
CCCGAAGGCATTGTGAGAGTACTATATCCGGGCTAGT
Found at i:53684863 original size:29 final size:27
Alignment explanation
Indices: 53684786--53684867 Score: 114
Period size: 29 Copynumber: 3.0 Consensus size: 27
53684776 TCAACTAGAT
*
53684786 ACAGAT-ATTGTGCAAAGCCACCAG-A
1 ACAGATAATTGTGCATAGCCACCAGAA
53684811 ACAGATAATTGTGGCATAGCCACCAGAA
1 ACAGATAATTGT-GCATAGCCACCAGAA
53684839 ACAGATATATTTGTGCATAGCCACCAGAA
1 ACAGATA-A-TTGTGCATAGCCACCAGAA
53684868 CGCTTCCTCC
Statistics
Matches: 51, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
25 6 0.12
26 5 0.10
27 12 0.24
28 8 0.16
29 16 0.31
30 4 0.08
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (27 bp):
ACAGATAATTGTGCATAGCCACCAGAA
Found at i:53702914 original size:29 final size:28
Alignment explanation
Indices: 53702839--53702919 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 28
53702829 GCGAGACTGC
** *
53702839 CAGATATTGTTACGAAGTCACCAG-ATA
1 CAGATATTGTGGCGAAGCCACCAGAATA
* *
53702866 CAGATATTGTGGCTAGGCCACCAGAATA
1 CAGATATTGTGGCGAAGCCACCAGAATA
* *
53702894 GATATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGGCGAAGCCACCAGA
53702920 TTGCAGTGAG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
27 19 0.44
28 8 0.19
29 16 0.37
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (28 bp):
CAGATATTGTGGCGAAGCCACCAGAATA
Found at i:53703660 original size:27 final size:27
Alignment explanation
Indices: 53703630--53703829 Score: 274
Period size: 27 Copynumber: 7.4 Consensus size: 27
53703620 AGGGCAAAAT
* * * *
53703630 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
53703657 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
53703684 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
53703711 GGTAATCCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
53703738 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
**
53703765 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
53703792 GGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
53703819 GGTAATTCTAC
1 GGTAATTCTAC
53703830 AACTTATCCA
Statistics
Matches: 153, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:53719289 original size:46 final size:45
Alignment explanation
Indices: 53719236--53719411 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
53719226 TGGTTGAGCA
53719236 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
53719282 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
53719329 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
53719375 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
53719412 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 68 0.63
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:53719392 original size:93 final size:93
Alignment explanation
Indices: 53719233--53719403 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
53719223 GGATGGTTGA
* * * *
53719233 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
53719298 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
53719326 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
53719391 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
53719404 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:53720793 original size:27 final size:27
Alignment explanation
Indices: 53720763--53720816 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
53720753 TGCCATGTGA
*
53720763 AATTGAATGGCAAATTATTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
* **
53720790 AATTGAGTGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
53720817 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:53724960 original size:48 final size:48
Alignment explanation
Indices: 53724886--53725111 Score: 332
Period size: 48 Copynumber: 4.7 Consensus size: 48
53724876 TAAAGTACCA
* * * *
53724886 ATGCCATGTCCCCGACATGGTATTACA-T-GAATCTACATATAATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA-C-ACATATCATCACCG
*
53724934 ATGCCATGTCCCAGACATTGTCTTACACTGGCACACATATCATC-CCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
53724981 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
*
53725029 ATACCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
* * *
53725077 ATACCATGTCCTAGACATGGTCTTACACTGACACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
53725112 TTTAGCATGG
Statistics
Matches: 166, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
47 46 0.28
48 116 0.70
49 2 0.01
50 2 0.01
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCG
Found at i:53725052 original size:95 final size:96
Alignment explanation
Indices: 53724886--53725111 Score: 332
Period size: 95 Copynumber: 2.4 Consensus size: 96
53724876 TAAAGTACCA
* * * *
53724886 ATGCCATGTCCCCGACATGGTATTACA-T-GAATCTACATATAATCACCGATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA-C-ACATATAATCACCGATACCATGTCCCAGA
*
53724949 CATTGTCTTACACTGGCACACATATCATC-CCG
64 CATGGTCTTACACTGGCACACATATCATCACCG
*
53724981 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCACCGATACCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATAATCACCGATACCATGTCCCAGACA
53725046 TGGTCTTACACTGGCACACATATCATCACCG
66 TGGTCTTACACTGGCACACATATCATCACCG
* * *
53725077 ATACCATGTCCTAGACATGGTCTTACACTGACACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
53725112 TTTAGCATGG
Statistics
Matches: 119, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
95 80 0.67
96 37 0.31
97 2 0.02
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATAATCACCGATACCATGTCCCAGACA
TGGTCTTACACTGGCACACATATCATCACCG
Found at i:53727668 original size:53 final size:53
Alignment explanation
Indices: 53727564--53727708 Score: 130
Period size: 53 Copynumber: 2.7 Consensus size: 53
53727554 TTCCTTTTTA
* * * * *
53727564 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTGGTAGCCTTGGCTTATG
1 AACTCACCATTGCCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCTTATG
* * *
53727617 AACTCACCATTGCCATG-CTTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTCACCATTGCCATGTC-TTGACATGGTCTTACATGGGAGCCTTGCCTTAT-G
** * * * *
53727671 TAGTTTATCAATGTCATGTCTTGACATGGTCTTACATG
1 -AACTCACCATTGCCATGTCTTGACATGGTCTTACATG
53727709 ATTTTCTTGC
Statistics
Matches: 73, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
52 1 0.01
53 42 0.58
54 1 0.01
55 28 0.38
56 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (53 bp):
AACTCACCATTGCCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCTTATG
Found at i:53739646 original size:19 final size:19
Alignment explanation
Indices: 53739619--53739670 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
53739609 AATAAATTAC
53739619 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTGAGT
*
53739638 TCATTTTAGTTAATTGAGT
1 TCATCTTAGTTAATTGAGT
53739657 TCATCTTAGTTAAT
1 TCATCTTAGTTAAT
53739671 AACTCATCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.50
Consensus pattern (19 bp):
TCATCTTAGTTAATTGAGT
Found at i:53739710 original size:59 final size:55
Alignment explanation
Indices: 53739617--53739726 Score: 125
Period size: 59 Copynumber: 1.9 Consensus size: 55
53739607 TGAATAAATT
* **
53739617 ACTCATCTTAGTTAATTGAGTTCATTTTAGTTAATTGAGTTCATCTTAGTTAATA
1 ACTCATCTTAGTTAATTGAGTTCATTTTAGTTAATTCAACTCATCTTAGTTAATA
53739672 ACTCATCTTAGATTAATCAATGAGTTGC-TTTTCA-TTAATTCAACTCATCTTAGTT
1 ACTCATCTTAG-TTAAT---TGAGTT-CATTTT-AGTTAATTCAACTCATCTTAGTT
53739727 TTAATAATTG
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
55 11 0.24
56 5 0.11
59 28 0.61
60 2 0.04
ACGTcount: A:0.29, C:0.15, G:0.11, T:0.45
Consensus pattern (55 bp):
ACTCATCTTAGTTAATTGAGTTCATTTTAGTTAATTCAACTCATCTTAGTTAATA
Found at i:53739792 original size:19 final size:19
Alignment explanation
Indices: 53739741--53739792 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
53739731 TAATTGAGTT
53739741 ATTAACTAAGATGAACTAA
1 ATTAACTAAGATGAACTAA
* * * *
53739760 ATTAAGTAAAATGAATTCA
1 ATTAACTAAGATGAACTAA
53739779 ATTAACTAAGATGA
1 ATTAACTAAGATGA
53739793 GTAATTTATT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.52, C:0.08, G:0.12, T:0.29
Consensus pattern (19 bp):
ATTAACTAAGATGAACTAA
Found at i:53741172 original size:16 final size:16
Alignment explanation
Indices: 53741146--53741188 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
53741136 ATGTATCGGC
*
53741146 AAAAGCCGAAATGCCG
1 AAAAGCTGAAATGCCG
*
53741162 AAAAGTTGAAATGCCG
1 AAAAGCTGAAATGCCG
53741178 AAAAGCTGAAA
1 AAAAGCTGAAA
53741189 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.49, C:0.16, G:0.23, T:0.12
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:53741447 original size:29 final size:29
Alignment explanation
Indices: 53741412--53741549 Score: 249
Period size: 29 Copynumber: 4.8 Consensus size: 29
53741402 TGAATGTGAC
* *
53741412 TGGGCCTAATGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATACAGGTGATT
53741441 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATACAGGTGATT
53741470 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATACAGGTGATT
53741499 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATACAGGTGATT
*
53741528 TGGGCCTAATGGGCCAGATACA
1 TGGGCCTAATGGGCCATATACA
53741550 AGTATGTGAA
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 106 1.00
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATACAGGTGATT
Found at i:53744296 original size:53 final size:54
Alignment explanation
Indices: 53744118--53744324 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 54
53744108 ATTAGGGTTT
* * *
53744118 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * * * * * * * *
53744172 AGGGAAATCATGTAAGACCATGTCAAGATATGACATTGATACACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTA-AGTTCTATAAGGC
* * * * *
53744227 AAAGATCCCATATAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* ** *
53744280 AAGGATACCACGTAAGACCATATCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
53744325 TAAAAAGGAA
Statistics
Matches: 115, Mismatches: 37, Indels: 3
0.74 0.24 0.02
Matches are distributed among these distances:
53 43 0.37
54 34 0.30
55 38 0.33
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:53750428 original size:55 final size:54
Alignment explanation
Indices: 53750301--53750438 Score: 177
Period size: 55 Copynumber: 2.5 Consensus size: 54
53750291 GTTTAAGGAC
* * * * *
53750301 ACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGCAAGGAA
1 ACCATGTAAGACCATGCCAAGGCATGGCATTGATAACTACTACAAGGCAAAGAA
* * * *
53750355 ATCATGTAAGACCATGCCAAGACATGGCATTGATACACTACTATAAGGCAAAGAT
1 ACCATGTAAGACCATGCCAAGGCATGGCATTGATA-ACTACTACAAGGCAAAGAA
*
53750410 CCCATGTAAGACCATGCCAAGGCATGGCA
1 ACCATGTAAGACCATGCCAAGGCATGGCA
53750439 ATGGTGAGTT
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
54 31 0.44
55 40 0.56
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (54 bp):
ACCATGTAAGACCATGCCAAGGCATGGCATTGATAACTACTACAAGGCAAAGAA
Found at i:53753573 original size:68 final size:68
Alignment explanation
Indices: 53753423--53753580 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 68
53753413 CTAGCCAATT
* * *
53753423 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
53753488 TTTA
65 CATA
* * *
53753492 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
53753554 CTACATA
63 C-ACATA
*
53753561 GTATCTCGTAGCTTTCTTGT
1 -TATCTCGTAGCTCTCTTGT
53753581 ACACATGATG
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
68 35 0.47
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:53759951 original size:39 final size:40
Alignment explanation
Indices: 53759843--53760067 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
53759833 TTGTATGATG
* * * *
53759843 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCACA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
53759883 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
53759923 TCCGGGCTAAG-CCCAAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
53759962 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
53760002 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
53760043 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
53760068 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.20
40 118 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:53767912 original size:40 final size:40
Alignment explanation
Indices: 53767857--53768002 Score: 240
Period size: 40 Copynumber: 3.6 Consensus size: 40
53767847 TTGAATGATG
*
53767857 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
53767897 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
53767937 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
53767978 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
53768003 AACGAGGAGC
Statistics
Matches: 100, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 98 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:53768020 original size:80 final size:79
Alignment explanation
Indices: 53767861--53768035 Score: 228
Period size: 80 Copynumber: 2.2 Consensus size: 79
53767851 ATGATGTCCG
* **
53767861 GGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGC
1 GGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAAC
*
53767926 GAGTTACTAAATCC
66 GAGTGACTAAATCC
* *
53767940 GAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGA
1 G-GTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGA
*
53768004 ACGAG-GAGCTATATCC
64 ACGAGTGA-CTAAATCC
* *
53768020 GGTTAAATTCCGAAGG
1 GGTTAAGTCCCGAAGG
53768036 TACGTGATTT
Statistics
Matches: 84, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
79 15 0.18
80 67 0.80
81 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
GGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAAC
GAGTGACTAAATCC
Found at i:53771800 original size:18 final size:18
Alignment explanation
Indices: 53771779--53771813 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
53771769 TGTTGAAAGC
*
53771779 TCGTGCTCTTTAGAAAAA
1 TCGTGCTATTTAGAAAAA
*
53771797 TCGTGCTATTTTGAAAA
1 TCGTGCTATTTAGAAAA
53771814 CTCACGTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (18 bp):
TCGTGCTATTTAGAAAAA
Found at i:53772333 original size:26 final size:27
Alignment explanation
Indices: 53772303--53772367 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 27
53772293 CAGCAAAGCT
53772303 ACCAGTAACAGTAAATGTGGCA-AACC
1 ACCAGTAACAGTAAATGTGGCAGAACC
** *
53772329 ACCAGTAACAGTAGTTGTGGCAGAGCC
1 ACCAGTAACAGTAAATGTGGCAGAACC
53772356 ACCAGT-ACAGTA
1 ACCAGTAACAGTA
53772368 CTTCCTCCAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
26 26 0.74
27 9 0.26
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
ACCAGTAACAGTAAATGTGGCAGAACC
Found at i:53775236 original size:75 final size:75
Alignment explanation
Indices: 53775131--53775276 Score: 283
Period size: 75 Copynumber: 1.9 Consensus size: 75
53775121 TCGTATCCTA
53775131 AACCCGTGTAACTCTCTGTTTATGATGTCATCAACAAATTGAAGTCACACGACCAAGACACACGC
1 AACCCGTGTAACTCTCTGTTTATGATGTCATCAACAAATTGAAGTCACACGACCAAGACACACGC
53775196 CCATGTACTT
66 CCATGTACTT
*
53775206 AACCCGTGTAACTCTCTGTTTATGATGTCATCAACAAATTGAAGTCACAGGACCAAGACACACGC
1 AACCCGTGTAACTCTCTGTTTATGATGTCATCAACAAATTGAAGTCACACGACCAAGACACACGC
53775271 CCATGT
66 CCATGT
53775277 TCCAAGGCCG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (75 bp):
AACCCGTGTAACTCTCTGTTTATGATGTCATCAACAAATTGAAGTCACACGACCAAGACACACGC
CCATGTACTT
Found at i:53782038 original size:56 final size:56
Alignment explanation
Indices: 53781836--53782011 Score: 226
Period size: 56 Copynumber: 3.1 Consensus size: 56
53781826 ACATAGAAGT
* * * *
53781836 ATATGTGATTCCAATATATGTGTGTGAGTAAGATCACATTTTATACGTTGGCATCG
1 ATATGTGACTCCAATATATGTGTGCGAGTAAGACCACATTTTATATGTTGGCATCG
* * * * ** * *
53781892 ATATGTGACTGCGATATATGTGCGCGAGTAAGATCATGTTTTATATGTCGTCATCG
1 ATATGTGACTCCAATATATGTGTGCGAGTAAGACCACATTTTATATGTTGGCATCG
* *
53781948 ATATGTGACTCCAATATATGTGTGCGATTAAGACCACATTTCATATGTTGGCATCG
1 ATATGTGACTCCAATATATGTGTGCGAGTAAGACCACATTTTATATGTTGGCATCG
53782004 ATATGTGA
1 ATATGTGA
53782012 TTTCGATATG
Statistics
Matches: 100, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
56 100 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (56 bp):
ATATGTGACTCCAATATATGTGTGCGAGTAAGACCACATTTTATATGTTGGCATCG
Found at i:53788533 original size:51 final size:51
Alignment explanation
Indices: 53788460--53788584 Score: 160
Period size: 51 Copynumber: 2.5 Consensus size: 51
53788450 TCTCTTAGAA
* * * **
53788460 TATAATATCATATCTTCTAAGATTACATATCTTATCTAAGATATGTAATCT
1 TATAATATCATATCTTATAAGATTACATATCATATCTAAGATATCTAAGAT
* * * *
53788511 TATAAAATAATATCTTATAAGATTCCATATCATATCTAAGATCTCTAAGAT
1 TATAATATCATATCTTATAAGATTACATATCATATCTAAGATATCTAAGAT
*
53788562 TATAATATCATATCTTTTAAGAT
1 TATAATATCATATCTTATAAGAT
53788585 CATGTTTCCA
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.42
Consensus pattern (51 bp):
TATAATATCATATCTTATAAGATTACATATCATATCTAAGATATCTAAGAT
Found at i:53789655 original size:96 final size:96
Alignment explanation
Indices: 53789491--53789780 Score: 456
Period size: 96 Copynumber: 3.0 Consensus size: 96
53789481 TCGCTTCTTT
*
53789491 TTGCTCCTCTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
1 TTGCTCCTCTTTGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
* *
53789556 GTCTGCTCCATCGTTCCCTTCGATGATAGAC
66 GTCTGCTACATCGTTCCCTTCGATGACAGAC
*
53789587 TTGCTCCTCTTTGCCCTCTTGGCTTCAGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
1 TTGCTCCTCTTTGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
53789652 GTCTGCTACATCGTTCCCTTCGATGACAGAC
66 GTCTGCTACATCGTTCCCTTCGATGACAGAC
* * *
53789683 TTTCTCCTCTTTGCCCTCTTGGCTTCGGCTTTTCCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
1 TTGCTCCTCTTTGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
* * * * *
53789748 ATATGCT-CGATCATTCCCATCGATAACAGAC
66 GTCTGCTAC-ATCGTTCCCTTCGATGACAGAC
53789779 TT
1 TT
53789781 CCTCGGACAC
Statistics
Matches: 180, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
95 1 0.01
96 179 0.99
ACGTcount: A:0.13, C:0.34, G:0.18, T:0.36
Consensus pattern (96 bp):
TTGCTCCTCTTTGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
GTCTGCTACATCGTTCCCTTCGATGACAGAC
Found at i:53791548 original size:51 final size:51
Alignment explanation
Indices: 53791476--53791600 Score: 151
Period size: 51 Copynumber: 2.5 Consensus size: 51
53791466 TCTCTTAGAA
* * * * **
53791476 TATAATATCATATCTTCTAAGATTACATATCTTATCTAAGATATGTAATCT
1 TATAATATCATATCTTATAAGATTACATAGCATATCTAAGATATCTAAGAT
* * * *
53791527 TATAAAATAATATCTTATAAGATTCCATAGCATATCTAAGATCTCTAAGAT
1 TATAATATCATATCTTATAAGATTACATAGCATATCTAAGATATCTAAGAT
*
53791578 TATAATATCATATCTTTTAAGAT
1 TATAATATCATATCTTATAAGAT
53791601 CATGTTTCCA
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.41
Consensus pattern (51 bp):
TATAATATCATATCTTATAAGATTACATAGCATATCTAAGATATCTAAGAT
Found at i:53792541 original size:41 final size:39
Alignment explanation
Indices: 53792416--53792560 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 39
53792406 ACGACAATTT
* *
53792416 GGCTATGTATGGCACTTAGTGTGCGATTTGAGATAGCTTC
1 GGCTATGTATGGCACTTAGTGTGAGA-TTGAAATAGCTTC
*
53792456 GGCAATGTATGGCACTTAGTGTGCA-ATTCGAAATAGCTTC
1 GGCTATGTATGGCACTTAGTGTG-AGATT-GAAATAGCTTC
* *
53792496 GGCTATGTATGGTACTTAGTATGTGAGATTAAAATAGCTTC
1 GGCTATGTATGGCACTTAG--TGTGAGATTGAAATAGCTTC
53792537 GGCTATGTATTGGCACTTAGTGTG
1 GGCTATGTA-TGGCACTTAGTGTG
53792561 CCAAAATTCG
Statistics
Matches: 92, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
39 2 0.02
40 54 0.59
41 20 0.22
42 16 0.17
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (39 bp):
GGCTATGTATGGCACTTAGTGTGAGATTGAAATAGCTTC
Done.