Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 177 of 325
Found at i:57342452 original size:15 final size:16
Alignment explanation
Indices: 57342390--57342456 Score: 88
Period size: 15 Copynumber: 4.4 Consensus size: 16
57342380 TGAAAACCAT
*
57342390 GATA-AAGAAGTCCAA
1 GATACAAGAAATCCAA
*
57342405 GACA-AAGAAATCCAA
1 GATACAAGAAATCCAA
57342420 GATA-AAGAAATCCAA
1 GATACAAGAAATCCAA
57342435 GATACAA-AAATCCAA
1 GATACAAGAAATCCAA
57342450 GATACAA
1 GATACAA
57342457 TATCATAATA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
15 46 0.96
16 2 0.04
ACGTcount: A:0.58, C:0.16, G:0.13, T:0.12
Consensus pattern (16 bp):
GATACAAGAAATCCAA
Found at i:57343449 original size:45 final size:45
Alignment explanation
Indices: 57343327--57343451 Score: 162
Period size: 45 Copynumber: 2.8 Consensus size: 45
57343317 CGCATCCATA
* * *
57343327 ATGAACTCGGACCAACTCAATGAGCTCGGA-TGCTTCACATATACC
1 ATGAACTCGGACCAACTCAACGAGCTCGAATTTC-TCACATATACC
* * * *
57343372 ACGAACTTGGACCAACTCAACAAGCTCGAATTTCTCACATATATC
1 ATGAACTCGGACCAACTCAACGAGCTCGAATTTCTCACATATACC
*
57343417 ATGAACTCGGACCAACTCAACGAGCTCAAATTTCT
1 ATGAACTCGGACCAACTCAACGAGCTCGAATTTCT
57343452 TAATTCCTAG
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
45 66 0.97
46 2 0.03
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (45 bp):
ATGAACTCGGACCAACTCAACGAGCTCGAATTTCTCACATATACC
Found at i:57343668 original size:14 final size:16
Alignment explanation
Indices: 57343636--57343674 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
57343626 ACTTACATAA
*
57343636 CATATATCACATATTT
1 CATATATCACATATGT
57343652 CATATATCAC-T-TGT
1 CATATATCACATATGT
57343666 CATATATCA
1 CATATATCA
57343675 TGATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
CATATATCACATATGT
Found at i:57345259 original size:29 final size:30
Alignment explanation
Indices: 57345205--57345264 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
57345195 TTTCTGAGCC
*
57345205 TAGGGGCAAAATTGTAATTCTGCAAAGGTT
1 TAGGGGCAAAATTGTAATTCTGCAAAAGTT
* *
57345235 TAGGGG-AAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAATTGTAATTCTGCAAAAGTT
57345264 T
1 T
57345265 GAGATAGGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.78
30 6 0.22
ACGTcount: A:0.35, C:0.07, G:0.23, T:0.35
Consensus pattern (30 bp):
TAGGGGCAAAATTGTAATTCTGCAAAAGTT
Found at i:57346074 original size:47 final size:47
Alignment explanation
Indices: 57346023--57346144 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
57346013 GCATTGGAAC
57346023 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
57346070 TAAGACAAGGATACCATGTAAGAACATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
57346117 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
57346145 CCAAGACATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:57346126 original size:141 final size:139
Alignment explanation
Indices: 57345890--57346214 Score: 305
Period size: 141 Copynumber: 2.3 Consensus size: 139
57345880 ATTTACGATT
* * * *
57345890 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGGCAAGGATCCCGTGTAAGACCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGACAAGGATACCATGTAAGAACA
** *
57345955 TGTCAAGACATGGCATCAGCATTGGTTAAGGACT-CCATGTAAGACCACATCAAGATGTGCATTG
66 TGTCAAGACATGGCATCAGCATAAGATAAGGA-TACCATGTAAGACCACATCAAGATGTGCATTG
57346019 GAACTAAGAC
130 GAACTAAGAC
***
57346029 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGACAAGGATACCATGTAAGAA
1 AAGGATACCATGTAAGACCATGTCAAG-ACATGGCA-TTGGTAAGACAAGGATACCATGTAAGAA
*** ** * * ***
57346094 CATGTTTGGAACATGGCATTTG-GTAAGATAAGGATATCATGTAAGACCATGCCAAGACATG-GC
64 CATGTCAAG-ACATGGCATCAGCATAAGATAAGGATACCATGTAAGACCACATCAAG--ATGTGC
* *
57346157 ATTGATAAGTTCTATAAGGC
126 ATTG-GAA---C--TAAGAC
* *
57346177 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTG
57346215 ATGAGTTACT
Statistics
Matches: 147, Mismatches: 27, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
139 24 0.16
140 9 0.06
141 54 0.37
142 16 0.11
143 5 0.03
146 4 0.03
147 8 0.05
148 27 0.18
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (139 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGACAAGGATACCATGTAAGAACA
TGTCAAGACATGGCATCAGCATAAGATAAGGATACCATGTAAGACCACATCAAGATGTGCATTGG
AACTAAGAC
Found at i:57346252 original size:55 final size:54
Alignment explanation
Indices: 57346123--57346319 Score: 254
Period size: 54 Copynumber: 3.6 Consensus size: 54
57346113 TTGGTAAGAT
* *
57346123 AAGGATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
57346177 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-C
* * * *
57346233 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
57346285 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
57346320 ATGGTAAGTT
Statistics
Matches: 124, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
52 4 0.03
53 31 0.25
54 43 0.35
55 42 0.34
56 4 0.03
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:57346330 original size:108 final size:108
Alignment explanation
Indices: 57346131--57346344 Score: 304
Period size: 108 Copynumber: 2.0 Consensus size: 108
57346121 ATAAGGATAT
* * *
57346131 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAAGCAAGGAAACCACGTAAGACC
* * * *
57346196 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCC
66 ATGTCAAGACATGGCAATGATAAGTTA-AAAAAGGAAAAGGTCC
* * * *
57346240 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAAGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAAGCAAGGAAACCACGTAAGACC
*
57346304 ATGTCAAGACATGGCAATGGTAAGTTAAAAAAGGAAAAGGT
66 ATGTCAAGACATGGCAATGATAAGTTAAAAAAGGAAAAGGT
57346345 TCTCGAGTAA
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
107 12 0.13
108 46 0.49
109 35 0.38
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.21
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAAGCAAGGAAACCACGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTAAAAAAGGAAAAGGTCC
Found at i:57353508 original size:44 final size:44
Alignment explanation
Indices: 57353443--57353529 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
57353433 TTGATAACTT
* *
57353443 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
* *
57353487 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGACGG
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGACGG
57353530 TTAAGGATAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 3 0.08
44 35 0.92
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGACGGA
Found at i:57353848 original size:55 final size:54
Alignment explanation
Indices: 57353719--57353936 Score: 210
Period size: 54 Copynumber: 4.0 Consensus size: 54
57353709 TTGGTAAGAC
* * *
57353719 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTAATA-AAGGA
* * * *
57353773 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTAATATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTAATA-AAGG-A
* * *** * *
57353829 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGCGAGTTCATAAA-GC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTAATAAAGGA
* * * *
57353881 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCAA-AAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-AATAAAGGA
57353935 AA
1 AA
57353937 AGGTTCCCGA
Statistics
Matches: 134, Mismatches: 25, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
52 4 0.03
53 37 0.28
54 46 0.34
55 43 0.32
56 4 0.03
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTAATAAAGGA
Found at i:57358578 original size:39 final size:39
Alignment explanation
Indices: 57358535--57358613 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
57358525 AATATGTATG
57358535 CCAAATAAGCTTCATACCCCTTTCTCAAACACTTTTGAC
1 CCAAATAAGCTTCATACCCCTTTCTCAAACACTTTTGAC
57358574 CCAAATAAGCTTCATACCCCTTTCTCAAACACTTTTGAC
1 CCAAATAAGCTTCATACCCCTTTCTCAAACACTTTTGAC
57358613 C
1 C
57358614 AGTCATCGAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.30, C:0.34, G:0.05, T:0.30
Consensus pattern (39 bp):
CCAAATAAGCTTCATACCCCTTTCTCAAACACTTTTGAC
Found at i:57362818 original size:47 final size:45
Alignment explanation
Indices: 57362672--57362888 Score: 159
Period size: 47 Copynumber: 4.7 Consensus size: 45
57362662 TATACGTGCT
* * * * * **
57362672 GATGCATGTACCAGACATGTCTTACACTAGC-A-CAACTCTTAGAA
1 GATGCATATCCCAGACATGTCTTACACTGGCAATCATCTC-TGGCC
* * * * *
57362716 GATGCGTGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCC
1 GATGCATATCCCAGACATGTCTTACACTGGCAATCATC-TC-TGGCC
* *
57362763 GATGCATATCCCAAACATGTCTTACACTGGCAATCGTCTCTGTGCC
1 GATGCATATCCCAGACATGTCTTACACTGGCAATCATCTCTG-GCC
* * * * * * *
57362809 GATGCCATATCCCAGGCATGGCATTATACTGACACTCATAATTTGGCC
1 GATG-CATATCCCAGACATGTC-TTACACTGGCAATCAT-CTCTGGCC
*
57362857 GATGCATGTCCCAGACATGTCTTACACTGGCA
1 GATGCATATCCCAGACATGTCTTACACTGGCA
57362889 CACAAGAAAT
Statistics
Matches: 135, Mismatches: 31, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
44 27 0.20
45 2 0.01
46 21 0.16
47 63 0.47
48 19 0.14
49 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (45 bp):
GATGCATATCCCAGACATGTCTTACACTGGCAATCATCTCTGGCC
Found at i:57369818 original size:47 final size:44
Alignment explanation
Indices: 57369702--57369828 Score: 139
Period size: 44 Copynumber: 2.8 Consensus size: 44
57369692 GGGATAAGTT
* *
57369702 GCTGATGCATGTCCTAGACATGTCTTACACTAGCACAACTCTTA
1 GCTGATGCATGTCCTAGACATGTCTTACACTGGCACAACTCTAA
* * * * *
57369746 GCAGATGCGTGTCCCAGACACGTCTTACACTGGCTATAA-TCGTCAA
1 GCTGATGCATGTCCTAGACATGTCTTACACTGGC-ACAACTC-T-AA
*
57369792 GGCTGATGCATGTCCTGGACATGTCTTACACTGGCAC
1 -GCTGATGCATGTCCTAGACATGTCTTACACTGGCAC
57369829 TCGTCTTTGT
Statistics
Matches: 66, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
44 31 0.47
45 4 0.06
46 2 0.03
47 29 0.44
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (44 bp):
GCTGATGCATGTCCTAGACATGTCTTACACTGGCACAACTCTAA
Found at i:57377139 original size:47 final size:46
Alignment explanation
Indices: 57377078--57377206 Score: 143
Period size: 47 Copynumber: 2.8 Consensus size: 46
57377068 ATCGTCGAGG
* * * *
57377078 CCGATGCATGTCCCAAACATGTCTTACACTGGCAGTCGT-CTCTGTC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATCTG-C
* * * * *
57377124 CCGATGCCATATCCCAGACATGGTCTTATACTGACACTCATAATTTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATAATCTGC
57377172 CCGATGCATGTCCCAGACATGTCTTACACTGGCAC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCAC
57377207 ACAAGAAATC
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
46 19 0.28
47 25 0.37
48 21 0.31
49 3 0.04
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATAATCTGC
Found at i:57383784 original size:13 final size:13
Alignment explanation
Indices: 57383766--57383790 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
57383756 TCCTATGTGA
57383766 TGATGAGCTTAAG
1 TGATGAGCTTAAG
57383779 TGATGAGCTTAA
1 TGATGAGCTTAA
57383791 TAGCTCTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (13 bp):
TGATGAGCTTAAG
Found at i:57389555 original size:14 final size:15
Alignment explanation
Indices: 57389531--57389560 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
57389521 GGATATCAAA
57389531 ACATGAATTAAGAAC
1 ACATGAATTAAGAAC
57389546 ACAT-AATTAAGAAC
1 ACATGAATTAAGAAC
57389560 A
1 A
57389561 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.57, C:0.13, G:0.10, T:0.20
Consensus pattern (15 bp):
ACATGAATTAAGAAC
Found at i:57392549 original size:40 final size:40
Alignment explanation
Indices: 57392487--57392704 Score: 300
Period size: 40 Copynumber: 5.5 Consensus size: 40
57392477 AAACCAAGTA
* *
57392487 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
57392526 CCTTCGGGACTTGGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
57392566 CCTTCGGGACTTAGCCCGGATATAGTAACTCGGACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
57392606 CCTTTGGGACTTAGCCTGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * *
57392646 CCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
57392686 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
57392705 TTACCATCCG
Statistics
Matches: 162, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.10
40 145 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:57436246 original size:40 final size:40
Alignment explanation
Indices: 57436153--57436370 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
57436143 AAGCCATGTA
* * *
57436153 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
57436191 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
57436231 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
57436271 CCTTCGGGA-TGTAGCCCGGATGTAATAAATCGCACAAATG
1 CCTTCGGGACT-TAGCCCGGATATAGTAACTCGCACAAATG
* *
57436311 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
57436352 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
57436371 TTATCATCCA
Statistics
Matches: 158, Mismatches: 14, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 12 0.08
39 18 0.11
40 100 0.63
41 24 0.15
42 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:57441654 original size:47 final size:47
Alignment explanation
Indices: 57441519--57442210 Score: 1127
Period size: 47 Copynumber: 14.6 Consensus size: 47
57441509 AGTATATGTG
*
57441519 GAATGTGAAAGTGTATATATGT-ATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
57441565 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
57441614 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
57441661 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
57441708 GAATGTTAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
57441755 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
57441804 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
57441851 GAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
57441898 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
57441945 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
57441994 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
57442041 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
57442090 GAATGTG-AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * *
57442136 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
57442183 GGACGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
57442211 TCCGAAAGGC
Statistics
Matches: 606, Mismatches: 30, Indels: 19
0.93 0.05 0.03
Matches are distributed among these distances:
46 53 0.09
47 372 0.61
48 14 0.02
49 167 0.28
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:57441727 original size:96 final size:95
Alignment explanation
Indices: 57441519--57442210 Score: 1178
Period size: 96 Copynumber: 7.3 Consensus size: 95
57441509 AGTATATGTG
57441519 GAATGTGAAAGTGTATATATGT-ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATAT
57441583 ATATGTGATAAGGCCTAATGGCCGATGTGAT
65 ATATGTGATAAGGCCTAATGGCCGATGTGAT
57441614 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATA
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATA
57441678 TATGTGATAAGGCCTAATGGCCGATGTGAT
66 TATGTGATAAGGCCTAATGGCCGATGTGAT
*
57441708 GAATGTTAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATAT
57441773 ATATGTGATAAGGCCTAATGGCCGATGTGAT
65 ATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
57441804 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGT-ATATA
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATA
57441868 TATGTGATAAGGCCTAATGGCCGATGTGAT
66 TATGTGATAAGGCCTAATGGCCGATGTGAT
57441898 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATAT
57441963 ATATGTGATAAGGCCTAATGGCCGATGTGAT
65 ATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
57441994 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-ATAT
57442059 ATATGTGATAAGGCCTAATGGCCGATGTGAT
65 ATATGTGATAAGGCCTAATGGCCGATGTGAT
57442090 GAATGTG-AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATA
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATA
* * * * * *
57442153 TATGTGACAGGGCCGAGTGGCCAACGTGAT
66 TATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
57442183 GGACGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
57442211 TCCGAAAGGC
Statistics
Matches: 570, Mismatches: 21, Indels: 13
0.94 0.03 0.02
Matches are distributed among these distances:
93 33 0.06
94 204 0.36
95 71 0.12
96 262 0.46
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (95 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGATATA
TATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:57441870 original size:190 final size:190
Alignment explanation
Indices: 57441519--57442216 Score: 1215
Period size: 190 Copynumber: 3.7 Consensus size: 190
57441509 AGTATATGTG
57441519 GAATGTGAAAGTGTATATATGT-ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
*
57441583 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
* *
57441648 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
131 TGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
57441708 GAATGTTAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
57441773 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
57441838 TGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
131 TGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
57441898 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
57441963 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
*
57442028 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
131 TGGCCGATGTGATGAATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
57442090 GAATGTG-AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * * * *
57442152 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGACGTGAAAGTGTATAAATGTGATAAGTCCGAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
57442217 AGGCATTTGT
Statistics
Matches: 490, Mismatches: 16, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
189 79 0.16
190 315 0.64
191 52 0.11
192 44 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (190 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
TGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:57443904 original size:40 final size:40
Alignment explanation
Indices: 57443621--57443892 Score: 402
Period size: 40 Copynumber: 6.8 Consensus size: 40
57443611 GAGAATTGAG
57443621 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
57443661 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
57443701 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
57443741 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* *
57443781 AGTGATGTATCCGGACTAAGT-TCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATTCGTGCT
* * ** * * *
57443821 AGTGATATATCCGTGCTAAACCCCGAAGAGCATCCGTGGT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* * * *
57443861 GGTGTTATATCCGGGCTAGGTCTCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCA
57443893 ATCATGCTGG
Statistics
Matches: 210, Mismatches: 20, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
39 1 0.00
40 209 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:57446124 original size:47 final size:47
Alignment explanation
Indices: 57446062--57446755 Score: 1136
Period size: 47 Copynumber: 14.6 Consensus size: 47
57446052 AGTATATGTG
*
57446062 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
57446109 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
57446158 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
57446205 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
57446252 GAATGTGAAAGTGTATATATGTGATAAAGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
57446299 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
57446348 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
57446395 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
57446442 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
57446489 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
57446538 GAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
57446585 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
57446634 GAATGTGAAGGTGTATATATGTGATAATGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * *
57446681 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
57446728 GGACGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
57446756 TCCCGAAAGG
Statistics
Matches: 607, Mismatches: 32, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
47 426 0.70
49 181 0.30
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:57446229 original size:143 final size:141
Alignment explanation
Indices: 57446062--57446755 Score: 1136
Period size: 143 Copynumber: 4.9 Consensus size: 141
57446052 AGTATATGTG
*
57446062 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
57446127 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
57446192 TAGCCGATGTGAT
129 TAGCCGATGTGAT
57446205 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
57446270 ATGTGATAAAGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAA
*
57446335 TGGCCGATGTGAT
129 TAGCCGATGTGAT
*
57446348 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
57446413 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
57446478 GCCGATGTGAT
131 GCCGATGTGAT
57446489 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
57446554 ATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
*
57446619 AATGGCCGATGTGAT
127 AATAGCCGATGTGAT
* * *
57446634 GAATGTGAAGGTGTATATATGTGATAATGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * * *
57446699 ATGTGACAGGGCCGAGTGGCCAACGTGATGGACGTGAAAGTGTATAAATGTGATAAG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
57446756 TCCCGAAAGG
Statistics
Matches: 522, Mismatches: 23, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
141 105 0.20
143 372 0.71
145 45 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (141 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
GCCGATGTGAT
Found at i:57446390 original size:190 final size:190
Alignment explanation
Indices: 57446062--57446755 Score: 1212
Period size: 190 Copynumber: 3.7 Consensus size: 190
57446052 AGTATATGTG
57446062 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
*
57446127 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAA
*
57446192 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
131 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
57446252 GAATGTGAAAGTGTATATATGTGATAAAGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
*
57446317 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAA
57446382 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
131 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
57446442 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
57446507 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAA
*
57446572 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
131 TGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
57446634 GAATGTGAAGGTGTATATATGTGATAATGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * * *
57446697 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGACGTGAAAGTGTATAAATGTGATAAG
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
57446756 TCCCGAAAGG
Statistics
Matches: 485, Mismatches: 17, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
190 393 0.81
192 92 0.19
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (190 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAAA
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:57448739 original size:12 final size:12
Alignment explanation
Indices: 57448722--57448753 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
57448712 TGGACACATG
57448722 CCCATGTGTCTA
1 CCCATGTGTCTA
57448734 CCCATGTGTCTA
1 CCCATGTGTCTA
57448746 CCCATGTG
1 CCCATGTG
57448754 GACAATTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.16, C:0.34, G:0.19, T:0.31
Consensus pattern (12 bp):
CCCATGTGTCTA
Found at i:57455575 original size:43 final size:43
Alignment explanation
Indices: 57455485--57455598 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 43
57455475 ATGATTTTCG
*
57455485 TGTAAGA-CTATGTCTGGGACATTGGCA-TCATATTTAATTTCA
1 TGTAAGACCT-TGTCTGGGACATTGGCATTCATATTTAATTACA
* * *
57455527 TGTAAGACCTTGTCTGGGACAGTGGCATTGATATTTGATTACA
1 TGTAAGACCTTGTCTGGGACATTGGCATTCATATTTAATTACA
** *
57455570 TGTAAGACCACGTCTAGGACATTGGCATT
1 TGTAAGACCTTGTCTGGGACATTGGCATT
57455599 ATACGAGCTT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 23 0.37
43 39 0.63
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (43 bp):
TGTAAGACCTTGTCTGGGACATTGGCATTCATATTTAATTACA
Found at i:57459490 original size:40 final size:40
Alignment explanation
Indices: 57459408--57459625 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
57459398 AAACCAAGTC
* * *
57459408 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAACG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
57459447 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
57459487 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
57459527 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
57459567 CCTTCGGGGCTTAGCCC-AAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
57459607 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
57459626 TTATCATCCG
Statistics
Matches: 163, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:57467082 original size:40 final size:40
Alignment explanation
Indices: 57467013--57467227 Score: 262
Period size: 40 Copynumber: 5.4 Consensus size: 40
57467003 AAACCAAGTA
* * *
57467013 CCTTC-GGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCAGATATAG-TAACTCGCACAAATG
*
57467051 CCTTCGGGACTTAGCCCAGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
*
57467091 CCTTCGGGACTTAGCCC-GAATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCAG-ATATAGTAACTCGCACAAATG
*
57467131 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
* * *
57467171 CCTTCAGGG-CTTAGCCTAGA-ATTAGTCACTAGCACAAATG
1 CCTTC-GGGACTTAGCCCAGATA-TAGTAACTCGCACAAATG
*
57467211 CCTTTGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
57467228 GGTTATCATC
Statistics
Matches: 156, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
38 5 0.03
39 13 0.08
40 134 0.86
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
Found at i:57475205 original size:37 final size:37
Alignment explanation
Indices: 57475145--57475222 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
57475135 TATTACGAAG
* * *
57475145 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
57475182 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
57475219 TCTT
1 TCTT
57475223 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:57475491 original size:22 final size:22
Alignment explanation
Indices: 57475463--57475537 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
57475453 TTTCACATTC
57475463 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
**** *** *
57475485 ATCACATATATACATTTCACATT
1 ATCACAT-CGGCCATTAGGCCTT
57475508 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
57475531 ATCACAT
1 ATCACAT
57475538 ATATATACAC
Statistics
Matches: 35, Mismatches: 16, Indels: 4
0.64 0.29 0.07
Matches are distributed among these distances:
22 14 0.40
23 14 0.40
24 7 0.20
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:57475571 original size:49 final size:47
Alignment explanation
Indices: 57475341--57475711 Score: 591
Period size: 49 Copynumber: 7.8 Consensus size: 47
57475331 CCCTTCGGGA
* * * * * * *
57475341 CTTATCACATTTTTACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
57475388 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57475435 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57475482 CTTATCACATATATACA-TTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57475528 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57475577 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
57475626 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
57475675 CTTATCACATATATACACTTTCACATTCATCACATCG
1 CTTATCACATATATACACTTTCACATTCATCACATCG
57475712 AATCCTAAAT
Statistics
Matches: 309, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 37 0.12
47 129 0.42
48 9 0.03
49 134 0.43
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:57485341 original size:40 final size:40
Alignment explanation
Indices: 57485293--57485401 Score: 209
Period size: 40 Copynumber: 2.7 Consensus size: 40
57485283 GCTACTCGGT
57485293 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
57485333 CAATTGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
57485373 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
57485402 CATCCGAATA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:57502003 original size:40 final size:40
Alignment explanation
Indices: 57501942--57502122 Score: 233
Period size: 40 Copynumber: 4.5 Consensus size: 40
57501932 TATTCGAATG
*
57501942 ATATCCGGGCTAAG-TCTCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATC-CGAAGGCATTTATGCTAGTGACT
* * *
57501982 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
57502022 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
57502062 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
57502102 ATATCCGGGCTAAGACCCGAA
1 ATATCCGGGCTAAGATCCGAA
57502123 AGCCTTGTGC
Statistics
Matches: 123, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 118 0.96
41 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:57505924 original size:48 final size:48
Alignment explanation
Indices: 57505863--57506190 Score: 602
Period size: 48 Copynumber: 6.8 Consensus size: 48
57505853 ATATATGTGC
*
57505863 GTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
**
57505911 GTGGTAAAGCCGAATGGCTAAAGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
*
57505959 GTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
*
57506007 GTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
57506055 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
57506103 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
*
57506151 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
57506191 GTGTGTATAT
Statistics
Matches: 270, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 270 1.00
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
GTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATAT
Found at i:57506386 original size:37 final size:37
Alignment explanation
Indices: 57506331--57506436 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
57506321 GGAAATATAT
57506331 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
57506368 TCCGTGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
57506405 TCCGGGTAAGACCCGATAACTACGTATGGAGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA
57506437 CTATTCGAGC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:57517862 original size:62 final size:62
Alignment explanation
Indices: 57517786--57517910 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
57517776 AAGCAACTAG
57517786 TTAGGCTGCAATCAGACAATTCCAGTAAAATTTTAGATACGGGAAGCGTTCTTGCAGATCTT
1 TTAGGCTGCAATCAGACAATTCCAGTAAAATTTTAGATACGGGAAGCGTTCTTGCAGATCTT
57517848 TTAGGCTGCAATCAGACAATTCCAGTAAAATTTTAGATACGGGAAGCGTTCTTGCAGATCTT
1 TTAGGCTGCAATCAGACAATTCCAGTAAAATTTTAGATACGGGAAGCGTTCTTGCAGATCTT
57517910 T
1 T
57517911 CTGTAACAAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (62 bp):
TTAGGCTGCAATCAGACAATTCCAGTAAAATTTTAGATACGGGAAGCGTTCTTGCAGATCTT
Found at i:57522161 original size:27 final size:27
Alignment explanation
Indices: 57522122--57522177 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
57522112 TGTGAGCCAG
57522122 TGTAAGATCATGTCTAGGACATGGCAT
1 TGTAAGATCATGTCTAGGACATGGCAT
57522149 TGTAAGA-CTATGTCTAGGACATGGCAT
1 TGTAAGATC-ATGTCTAGGACATGGCAT
57522176 TG
1 TG
57522178 GCATCGTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (27 bp):
TGTAAGATCATGTCTAGGACATGGCAT
Found at i:57524120 original size:18 final size:20
Alignment explanation
Indices: 57524079--57524122 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
57524069 CGGGTAGAGG
57524079 ACACGGGCGTGTCATGAGCC
1 ACACGGGCGTGTCATGAGCC
*
57524099 ACACGGGCGTGT-GTGA-CC
1 ACACGGGCGTGTCATGAGCC
57524117 ACACGG
1 ACACGG
57524123 CCTGTCAGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.35
19 3 0.13
20 12 0.52
ACGTcount: A:0.20, C:0.30, G:0.36, T:0.14
Consensus pattern (20 bp):
ACACGGGCGTGTCATGAGCC
Found at i:57535046 original size:40 final size:40
Alignment explanation
Indices: 57535002--57535188 Score: 263
Period size: 40 Copynumber: 4.7 Consensus size: 40
57534992 GCTACTTGCT
57535002 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
* *
57535042 CAAATGCCTACGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
*
57535082 CAAATGCCTTCGGGACTTAGCCCGGA-TATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
* * * * *
57535122 CAATTGCCTTCGGG-CTTAGCCGGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
*
57535160 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGATTAT
57535189 CATCCAAATA
Statistics
Matches: 129, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
38 24 0.19
39 17 0.13
40 87 0.67
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
Found at i:57537783 original size:192 final size:192
Alignment explanation
Indices: 57537456--57537839 Score: 759
Period size: 192 Copynumber: 2.0 Consensus size: 192
57537446 AGTTTCACCG
57537456 AGCTCGGTCCAAAACAATGGTGTACGGCATTTTCGACCGTACAAAGCCTCGTAAGGCGCCATCTT
1 AGCTCGGTCCAAAACAATGGTGTACGGCATTTTCGACCGTACAAAGCCTCGTAAGGCGCCATCTT
57537521 AATGCTTGACTGAAAACTATTGTTGTAAGCGAACTCAATCAAAGGTAGATACCGTTCCCATGAAC
66 AATGCTTGACTGAAAACTATTGTTGTAAGCGAACTCAATCAAAGGTAGATACCGTTCCCATGAAC
*
57537586 CACTAAACTCAAGGATGTAGCATCTCAACATATCCTCGAGTATCTGAATTATCCGCTCGGAT
131 CACTAAACTCAAGGATGCAGCATCTCAACATATCCTCGAGTATCTGAATTATCCGCTCGGAT
57537648 AGCTCGGTCCAAAACAATGGTGTACGGCATTTTCGACCGTACAAAGCCTCGTAAGGCGCCATCTT
1 AGCTCGGTCCAAAACAATGGTGTACGGCATTTTCGACCGTACAAAGCCTCGTAAGGCGCCATCTT
57537713 AATGCTTGACTGAAAACTATTGTTGTAAGCGAACTCAATCAAAGGTAGATACCGTTCCCATGAAC
66 AATGCTTGACTGAAAACTATTGTTGTAAGCGAACTCAATCAAAGGTAGATACCGTTCCCATGAAC
57537778 CACTAAACTCAAGGATGCAGCATCTCAACATATCCTCGAGTATCTGAATTATCCGCTCGGAT
131 CACTAAACTCAAGGATGCAGCATCTCAACATATCCTCGAGTATCTGAATTATCCGCTCGGAT
57537840 TGACCATCAG
Statistics
Matches: 191, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
192 191 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (192 bp):
AGCTCGGTCCAAAACAATGGTGTACGGCATTTTCGACCGTACAAAGCCTCGTAAGGCGCCATCTT
AATGCTTGACTGAAAACTATTGTTGTAAGCGAACTCAATCAAAGGTAGATACCGTTCCCATGAAC
CACTAAACTCAAGGATGCAGCATCTCAACATATCCTCGAGTATCTGAATTATCCGCTCGGAT
Found at i:57543290 original size:40 final size:40
Alignment explanation
Indices: 57543246--57543433 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
57543236 GCTACTTGCT
*
57543246 CAAATGCCTTCGGGACTTAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
57543286 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
57543326 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
57543366 CAATTGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
57543405 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
57543434 CATCCAAATA
Statistics
Matches: 135, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.01
39 32 0.24
40 101 0.75
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:57553322 original size:23 final size:21
Alignment explanation
Indices: 57553271--57553323 Score: 52
Period size: 23 Copynumber: 2.4 Consensus size: 21
57553261 AAATCCCCTA
*
57553271 ATATTAAAAAAAAGAAAAAAT
1 ATATGAAAAAAAAGAAAAAAT
* * *
57553292 AAAAGAAAAAAAGGAGAATAAAT
1 ATATGAAAAAAA--AGAAAAAAT
57553315 ATATGAAAA
1 ATATGAAAA
57553324 TGTGAATAAC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
21 9 0.38
23 15 0.62
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (21 bp):
ATATGAAAAAAAAGAAAAAAT
Found at i:57555595 original size:100 final size:100
Alignment explanation
Indices: 57555422--57555618 Score: 340
Period size: 100 Copynumber: 2.0 Consensus size: 100
57555412 TATTGTGAGG
* * * *
57555422 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACTGGATCATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACCACGTGTACCGGATAATTAGTCGCATGTGTAGTACT
*
57555487 AAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
*
57555522 TCACGTGTGTAGTACTAAGTGCAGGCTACCACGTGTACCGGATAATTAGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAAGCTACCACGTGTACCGGATAATTAGTCGCATGTGTAGTACT
57555587 AAGTGCAGGCTACTATGCGTACCAGATAACTT
66 AAGTGCAGGCTACTATGCGTACCAGATAACTT
57555619 TGGCTACAAG
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 91 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAAGCTACCACGTGTACCGGATAATTAGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:57555609 original size:49 final size:49
Alignment explanation
Indices: 57555427--57555615 Score: 234
Period size: 49 Copynumber: 3.8 Consensus size: 49
57555417 TGAGGTCACG
* * * * *
57555427 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACTGGATCATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTAGTCGCA
* * * * *
57555476 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA-TTAG-TCGCA
* *
57555527 TGTGTAGTACTAAGTGCAGGCTACCACGTGTACCGGATAATTAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTAGTCGCA
* *
57555576 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAA
57555616 CTTTGGCTAC
Statistics
Matches: 118, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 73 0.62
50 6 0.05
51 39 0.33
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCGGATAATTAGTCGCA
Found at i:57559219 original size:43 final size:43
Alignment explanation
Indices: 57559167--57559516 Score: 628
Period size: 43 Copynumber: 8.1 Consensus size: 43
57559157 CCGGCATTAT
*
57559167 GCCTACTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
57559210 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
57559253 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
57559296 GCCTGCTAGGCACGAAGGCCCGAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
57559339 GCCTGATAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
57559382 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
*
57559425 GCCTTCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
* *
57559468 GCCTGCTAGGCACGAAGGCCCAAATATACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
57559511 GCCTGC
1 GCCTGC
57559517 GGGATTTAAC
Statistics
Matches: 296, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 296 1.00
ACGTcount: A:0.31, C:0.34, G:0.25, T:0.11
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
Found at i:57564350 original size:32 final size:31
Alignment explanation
Indices: 57564313--57564399 Score: 106
Period size: 32 Copynumber: 2.8 Consensus size: 31
57564303 TTTACATCTC
*
57564313 AAAAAAATTATATATATAAAAGTTAAAAAGTT
1 AAAAAAATTATATATATAAAAATTAAAAA-TT
*
57564345 AAAAAAATTA-ATATATAAAAAATTATAAATT
1 AAAAAAATTATATATAT-AAAAATTAAAAATT
*
57564376 ATAAAAATT-TAATATATAAAAATT
1 AAAAAAATTAT-ATATATAAAAATT
57564400 TTAAAAACTA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
31 23 0.47
32 26 0.53
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (31 bp):
AAAAAAATTATATATATAAAAATTAAAAATT
Found at i:57564364 original size:15 final size:15
Alignment explanation
Indices: 57564346--57564397 Score: 68
Period size: 15 Copynumber: 3.3 Consensus size: 15
57564336 TAAAAAGTTA
57564346 AAAAAATTAATATAT
1 AAAAAATTAATATAT
*
57564361 AAAAAATTATAAATTAT
1 AAAAAATTA-ATA-TAT
*
57564378 AAAAATTTAATATAT
1 AAAAAATTAATATAT
57564393 AAAAA
1 AAAAA
57564398 TTTTAAAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 17 0.53
16 4 0.12
17 11 0.34
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAAAATTAATATAT
Found at i:57564398 original size:15 final size:15
Alignment explanation
Indices: 57564346--57564400 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 15
57564336 TAAAAAGTTA
*
57564346 AAAAAATTAATATAT
1 AAAAATTTAATATAT
57564361 AAAAAATTATAA-ATTAT
1 -AAAAATT-TAATA-TAT
57564378 AAAAATTTAATATAT
1 AAAAATTTAATATAT
57564393 AAAAATTT
1 AAAAATTT
57564401 TAAAAACTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
15 14 0.40
16 15 0.43
17 6 0.17
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
AAAAATTTAATATAT
Found at i:57566461 original size:41 final size:40
Alignment explanation
Indices: 57566319--57566463 Score: 159
Period size: 40 Copynumber: 3.6 Consensus size: 40
57566309 CTCGCACAAG
* * * * * *
57566319 GCCTTCGGGTCTTAACTCGGATATGGTCACTAGCATAAAT
1 GCCTTCGAGACTTAGCTCGGATATAGTCGCTAGCACAAAT
* *
57566359 GCCTTCGAGACTTAGCCCGAATATAGTCGCTAGCACAAAT
1 GCCTTCGAGACTTAGCTCGGATATAGTCGCTAGCACAAAT
* *
57566399 GCCTTCG-GATCTTAG-TCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGAGA-CTTAGCT-CGGATATAGTCGC-TAGCACAAAT
57566440 GCCTTCGAGACTTAGCTCGGATAT
1 GCCTTCGAGACTTAGCTCGGATAT
57566464 CATTCGAGTA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 2 0.02
40 55 0.63
41 27 0.31
42 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
GCCTTCGAGACTTAGCTCGGATATAGTCGCTAGCACAAAT
Found at i:57569856 original size:40 final size:40
Alignment explanation
Indices: 57569756--57569979 Score: 208
Period size: 40 Copynumber: 5.7 Consensus size: 40
57569746 GCTCCTCGTT
* * *
57569756 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCAG-A
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTC-GCA
*
57569796 C-AATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
57569834 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
57569874 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * * *
57569914 CAAATGCCTTC-GGATCTTAGTCCAGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
57569955 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
57569980 CAGCATTCAA
Statistics
Matches: 153, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
37 1 0.01
38 23 0.15
39 22 0.14
40 93 0.61
41 14 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:57569858 original size:78 final size:80
Alignment explanation
Indices: 57569756--57569926 Score: 206
Period size: 78 Copynumber: 2.2 Consensus size: 80
57569746 GCTCCTCGTT
* * *
57569756 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCAG-AC-AATGCCTTC-GGACTTAACCCG
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTC-GCACAAAGGCCTTCGGGACTTAACCCG
*
57569818 G-ATTTAATAACTCGCA
65 GAACTT-ATAACTCGCA
* * * *
57569834 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCACAAAGGCCTTCGGGACTTAACCCGG
* *
57569899 AACTTGTATCTCGCA
66 AACTTATAACTCGCA
57569914 CAAATGCCTTCGG
1 CAAATGCCTTCGG
57569927 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
77 1 0.01
78 34 0.44
79 8 0.10
80 32 0.41
81 3 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCACAAAGGCCTTCGGGACTTAACCCGG
AACTTATAACTCGCA
Found at i:57575619 original size:41 final size:42
Alignment explanation
Indices: 57575560--57575722 Score: 130
Period size: 42 Copynumber: 3.8 Consensus size: 42
57575550 GGGTTATGTG
* *
57575560 TGATTTCGTGTAAGACCATATC-GGGATATGGCATCGATATT
1 TGATTTCATGTAAAACCATATCTGGGATATGGCATCGATATT
* **
57575601 TGATTTCATGTAAAACCATTTCTGGGATATGGCATCGATACG
1 TGATTTCATGTAAAACCATATCTGGGATATGGCATCGATATT
* * * * * * * **
57575643 AGATATCGTGTAAGACTATAGCTGGGCTATCGATATCGATATAT
1 TGATTTCATGTAAAACCATATCTGGGATAT-GGCATCGATAT-T
** * *
57575687 GTGATCCCATGTAAGACCATATCTGAGATATGGCAT
1 -TGATTTCATGTAAAACCATATCTGGGATATGGCAT
57575723 TGGCATCTTA
Statistics
Matches: 91, Mismatches: 27, Indels: 5
0.74 0.22 0.04
Matches are distributed among these distances:
41 19 0.21
42 39 0.43
43 8 0.09
44 3 0.03
45 22 0.24
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (42 bp):
TGATTTCATGTAAAACCATATCTGGGATATGGCATCGATATT
Found at i:57575640 original size:42 final size:41
Alignment explanation
Indices: 57575560--57575640 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
57575550 GGGTTATGTG
* *
57575560 TGATTTCGTGTAAGACCATATCGGGATATGGCATCGATATT
1 TGATTTCATGTAAAACCATATCGGGATATGGCATCGATATT
*
57575601 TGATTTCATGTAAAACCATTTCTGGGATATGGCATCGATA
1 TGATTTCATGTAAAACCATATC-GGGATATGGCATCGATA
57575641 CGAGATATCG
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 19 0.53
42 17 0.47
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (41 bp):
TGATTTCATGTAAAACCATATCGGGATATGGCATCGATATT
Found at i:57583386 original size:26 final size:27
Alignment explanation
Indices: 57583335--57583386 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
57583325 TAACTTTTTT
* *
57583335 TAAATTTTTAATTTTTCATAATTATTA
1 TAAATTTTTAATTTTTCAAAAATATTA
*
57583362 TAAA-TTTTAATTTTTTAAAAATATT
1 TAAATTTTTAATTTTTCAAAAATATT
57583387 TTGGATTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (27 bp):
TAAATTTTTAATTTTTCAAAAATATTA
Found at i:57588434 original size:20 final size:20
Alignment explanation
Indices: 57588392--57588441 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
57588382 GCGACCATCA
* * **
57588392 GTGCCTCTGTTTGCACTTTG
1 GTGCCTTTGTTTACACTACG
57588412 GTGCCTTTGTTTACACTACG
1 GTGCCTTTGTTTACACTACG
57588432 GTGCCTTTGT
1 GTGCCTTTGT
57588442 ACAGCACTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.08, C:0.24, G:0.24, T:0.44
Consensus pattern (20 bp):
GTGCCTTTGTTTACACTACG
Found at i:57588451 original size:21 final size:20
Alignment explanation
Indices: 57588411--57588452 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
57588401 TTTGCACTTT
**
57588411 GGTGCCTTTGTTTACACTAC
1 GGTGCCTTTGTACACACTAC
57588431 GGTGCCTTTGTACAGCACTAC
1 GGTGCCTTTGTACA-CACTAC
57588452 G
1 G
57588453 ATGCTTTCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.17, C:0.26, G:0.24, T:0.33
Consensus pattern (20 bp):
GGTGCCTTTGTACACACTAC
Found at i:57590090 original size:21 final size:21
Alignment explanation
Indices: 57590004--57590136 Score: 67
Period size: 21 Copynumber: 6.3 Consensus size: 21
57589994 TTTACTTTCC
*
57590004 GTTTAGCTCTTATGAGCTTCA
1 GTTTAACTCTTATGAGCTTCA
* * *
57590025 -ATTAACTCATATGAGTTTCA
1 GTTTAACTCTTATGAGCTTCA
* * *
57590045 GTTTAAC-CCTATTG-GATTTCT
1 GTTTAACTCTTA-TGAG-CTTCA
* *
57590066 GTTTAGCTCTTTTGAGCTTCA
1 GTTTAACTCTTATGAGCTTCA
* * *
57590087 GTTTAAC-CATTATTAGGTTTCC
1 GTTTAACTC-TTATGA-GCTTCA
* * *
57590109 GTTCAGCTCTTATGAGCTTCC
1 GTTTAACTCTTATGAGCTTCA
57590130 GTTTAAC
1 GTTTAAC
57590137 CCTTGTGGGT
Statistics
Matches: 81, Mismatches: 23, Indels: 16
0.68 0.19 0.13
Matches are distributed among these distances:
20 21 0.26
21 42 0.52
22 17 0.21
23 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.16, T:0.44
Consensus pattern (21 bp):
GTTTAACTCTTATGAGCTTCA
Found at i:57590163 original size:42 final size:41
Alignment explanation
Indices: 57590034--57590170 Score: 148
Period size: 42 Copynumber: 3.2 Consensus size: 41
57590024 AATTAACTCA
* *
57590034 TATGAGTTTCAGTTTAACCCTATTGGATTTCTGTTTAGCTCT
1 TATGAGCTTCAGTTTAACCCT-TTGGGTTTCTGTTTAGCTCT
* * * * *
57590076 TTTGAGCTTCAGTTTAACCATTATTAGGTTTCCGTTCAGCTCT
1 TATGAGCTTCAGTTTAACC-CT-TTGGGTTTCTGTTTAGCTCT
* *
57590119 TATGAGCTTCCGTTTAACCCTTGTGGGTTTCTGTTTAGCACT
1 TATGAGCTTCAGTTTAACCCTT-TGGGTTTCTGTTTAGCTCT
*
57590161 TATGTGCTTC
1 TATGAGCTTC
57590171 TGTGTAGCCT
Statistics
Matches: 78, Mismatches: 15, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
41 1 0.01
42 42 0.54
43 35 0.45
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (41 bp):
TATGAGCTTCAGTTTAACCCTTTGGGTTTCTGTTTAGCTCT
Found at i:57594767 original size:40 final size:40
Alignment explanation
Indices: 57594708--57595147 Score: 623
Period size: 40 Copynumber: 11.1 Consensus size: 40
57594698 AGGTCTCGAC
57594708 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
57594747 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
57594787 GATGTACCCGGGCTAAGTCCTGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
57594827 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
57594867 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
57594907 GATGTAT-CGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * **
57594946 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
57594986 GATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
57595026 GATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** *
57595066 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * * * *
57595106 GTTATATCTGGGCTAGGTCCCGAAGAGAAATCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
57595146 GA
1 GA
57595148 CGTGTATTCG
Statistics
Matches: 357, Mismatches: 42, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
39 40 0.11
40 317 0.89
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:57598542 original size:47 final size:47
Alignment explanation
Indices: 57598490--57598799 Score: 476
Period size: 47 Copynumber: 6.6 Consensus size: 47
57598480 GATAATTGTG
* *
57598490 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
57598537 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
57598584 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
57598633 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
57598680 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
57598727 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
57598774 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
57598800 TCCCGAAGGG
Statistics
Matches: 241, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
47 196 0.81
49 45 0.19
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:57598637 original size:143 final size:141
Alignment explanation
Indices: 57598490--57598799 Score: 476
Period size: 143 Copynumber: 2.2 Consensus size: 141
57598480 GATAATTGTG
* * *
57598490 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
57598555 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGCCGAATG
* *
57598620 GCCGATGTGATGA
129 GCCAACGTGATGA
57598633 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * *
57598698 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
*
57598763 CAACGTGATGG
131 CAACGTGATGA
*
57598774 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
57598800 TCCCGAAGGG
Statistics
Matches: 153, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
141 54 0.35
143 99 0.65
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGC
CAACGTGATGA
Found at i:57604331 original size:26 final size:25
Alignment explanation
Indices: 57604302--57604354 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 25
57604292 ATCGAAAAGT
*
57604302 TCACAAAAAACTTTTAATCAGGAAGC
1 TCACAAAAAACCTTTAATCAGG-AGC
* * *
57604328 TCACGAAGAGCCTTTAATCAGGAGC
1 TCACAAAAAACCTTTAATCAGGAGC
57604353 TC
1 TC
57604355 CGGATAGCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.23
Consensus pattern (25 bp):
TCACAAAAAACCTTTAATCAGGAGC
Found at i:57605499 original size:21 final size:22
Alignment explanation
Indices: 57605461--57605501 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
57605451 GATATTTTTA
* *
57605461 TTTTTTTTTATCATTTTTCATC
1 TTTTTTATTATCACTTTTCATC
57605483 TTTTTTATT-TCACTTTTCA
1 TTTTTTATTATCACTTTTCA
57605502 ATTTCATCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTTTATTATCACTTTTCATC
Found at i:57607233 original size:16 final size:17
Alignment explanation
Indices: 57607212--57607244 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
57607202 CCCCAGAGTG
57607212 TATTCTG-ATGTTTGAT
1 TATTCTGTATGTTTGAT
57607228 TATTCTGTATGTTTGAT
1 TATTCTGTATGTTTGAT
57607245 ATCTGTGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.18, C:0.06, G:0.18, T:0.58
Consensus pattern (17 bp):
TATTCTGTATGTTTGAT
Found at i:57611633 original size:79 final size:82
Alignment explanation
Indices: 57611522--57611706 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
57611512 GCTACTCGTT
* * *
57611522 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
57611585 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
57611602 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
57611665 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
57611682 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57611707 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:57611706 original size:40 final size:40
Alignment explanation
Indices: 57611503--57611706 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
57611493 CGGAATTTAA
** *
57611503 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
57611543 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
57611583 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
57611622 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
57611662 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
57611702 CCGGA
1 CCGGA
57611707 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:57640371 original size:39 final size:40
Alignment explanation
Indices: 57640326--57640494 Score: 108
Period size: 40 Copynumber: 4.2 Consensus size: 40
57640316 CGGGGTTTAG
* * *
57640326 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
57640365 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
57640405 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
57640445 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
57640486 CCGGATATA
1 CCGGATATA
57640495 TCATTCGAGT
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.16
40 61 0.55
41 28 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:57640476 original size:41 final size:40
Alignment explanation
Indices: 57640349--57640494 Score: 195
Period size: 40 Copynumber: 3.6 Consensus size: 40
57640339 CTCGCACAAG
* * * * *
57640349 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
57640389 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
57640429 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
57640470 GCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGACTTAGCCCGGATATA
57640495 TCATTCGAGT
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.63
41 28 0.30
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:57648464 original size:41 final size:40
Alignment explanation
Indices: 57648301--57648481 Score: 206
Period size: 40 Copynumber: 4.5 Consensus size: 40
57648291 AATCAAGCAT
* ** * *
57648301 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
57648339 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
57648379 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
57648419 CTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
57648460 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
57648482 CATTCGAGTA
Statistics
Matches: 119, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
38 10 0.08
39 18 0.15
40 61 0.51
41 27 0.23
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:57648471 original size:81 final size:79
Alignment explanation
Indices: 57648301--57648481 Score: 220
Period size: 81 Copynumber: 2.3 Consensus size: 79
57648291 AATCAAGCAT
* * * *
57648301 CTTCGGGATTTAG-CCGGATATAACCACTCGCACAAGGCCTTCGGGTCTTAACCCGGATATGGTC
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAACCCGGATATAGTC
* *
57648365 ACTAGCATAAATGC
66 ACTAGCACAAAAGC
** * ** *
57648379 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGATCTTAGTCCGGATGTAGT
1 CTTCGGGACTTAGCCCGGATATAACCACTAGCAC-AAGGCCTTCGGATCTTAACCCGGATATAGT
*
57648444 CGCTTAGCACAAAAGC
65 CAC-TAGCACAAAAGC
57648460 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
57648482 CATTCGAGTA
Statistics
Matches: 87, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
78 12 0.14
79 17 0.20
80 26 0.30
81 32 0.37
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAACCACTAGCACAAGGCCTTCGGATCTTAACCCGGATATAGTC
ACTAGCACAAAAGC
Found at i:57652963 original size:46 final size:47
Alignment explanation
Indices: 57652857--57652978 Score: 147
Period size: 46 Copynumber: 2.6 Consensus size: 47
57652847 TGTCTTCGAC
** * *
57652857 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
57652907 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
*
57652953 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
57652979 CTGTCCTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 34 0.53
50 30 0.47
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:57654260 original size:45 final size:45
Alignment explanation
Indices: 57654196--57654282 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
57654186 CAATATCATT
*
57654196 TCACCGGCATTATAGCCTGCTAGACTCGAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGACTCAAAGGCCCGAATAGTATC
* *
57654241 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGTCCGAATAGT
1 TCACCGGCATTATAGCCTGCTAGACTCAAAGGCCCGAATAGT
57654283 GTTGTACGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGACTCAAAGGCCCGAATAGTATC
Found at i:57655157 original size:50 final size:49
Alignment explanation
Indices: 57655103--57655248 Score: 168
Period size: 50 Copynumber: 2.9 Consensus size: 49
57655093 GTAACTTATT
* * *
57655103 CGGAAATAATAAGGGCAAATTTAACATAAAATATTAA-AAGCAAATTTAAC
1 CGGAATTATTAAGAGCAAATTTAACA-AAAATATTAAGAA-CAAATTTAAC
* * *
57655153 CGGAATTATTAAGAACAAATTTAACCAGAATTATTAAGAACAAATTTAAC
1 CGGAATTATTAAGAGCAAATTTAA-CAAAAATATTAAGAACAAATTTAAC
** *
57655203 CGGAATTATTAAGAGCAAATTTAACCGGAATTATTAAGAACAAATT
1 CGGAATTATTAAGAGCAAATTTAA-CAAAAATATTAAGAACAAATT
57655249 AACAAGCTTA
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
50 82 0.95
51 4 0.05
ACGTcount: A:0.50, C:0.11, G:0.12, T:0.27
Consensus pattern (49 bp):
CGGAATTATTAAGAGCAAATTTAACAAAAATATTAAGAACAAATTTAAC
Found at i:57655162 original size:25 final size:25
Alignment explanation
Indices: 57655134--57655248 Score: 196
Period size: 25 Copynumber: 4.6 Consensus size: 25
57655124 TAACATAAAA
57655134 TATTAA-AAGCAAATTTAACCGGAAT
1 TATTAAGAA-CAAATTTAACCGGAAT
*
57655159 TATTAAGAACAAATTTAACCAGAAT
1 TATTAAGAACAAATTTAACCGGAAT
57655184 TATTAAGAACAAATTTAACCGGAAT
1 TATTAAGAACAAATTTAACCGGAAT
*
57655209 TATTAAGAGCAAATTTAACCGGAAT
1 TATTAAGAACAAATTTAACCGGAAT
57655234 TATTAAGAACAAATT
1 TATTAAGAACAAATT
57655249 AACAAGCTTA
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
25 83 0.98
26 2 0.02
ACGTcount: A:0.49, C:0.11, G:0.11, T:0.29
Consensus pattern (25 bp):
TATTAAGAACAAATTTAACCGGAAT
Found at i:57658382 original size:16 final size:17
Alignment explanation
Indices: 57658361--57658393 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
57658351 CCCCAGACTG
57658361 TATTCTG-ATGCTTGAT
1 TATTCTGTATGCTTGAT
*
57658377 TATTCTGTATGTTTGAT
1 TATTCTGTATGCTTGAT
57658394 ATCTGTGGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.18, C:0.09, G:0.18, T:0.55
Consensus pattern (17 bp):
TATTCTGTATGCTTGAT
Found at i:57661922 original size:9 final size:10
Alignment explanation
Indices: 57661902--57661940 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
57661892 TAAAATTTAA
57661902 AAATTTTATT
1 AAATTTTATT
57661912 AAATTTT-TT
1 AAATTTTATT
**
57661921 AAATTGAATT
1 AAATTTTATT
57661931 AAATTTTATT
1 AAATTTTATT
57661941 CACCTTACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
9 7 0.29
10 17 0.71
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (10 bp):
AAATTTTATT
Found at i:57662570 original size:21 final size:18
Alignment explanation
Indices: 57662544--57662584 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 18
57662534 TTTTTTTATC
57662544 TATTGTTATAATATTCATTTT
1 TATTGTTAT--TATT-ATTTT
57662565 TATTGTTATTATTATTTT
1 TATTGTTATTATTATTTT
57662583 TA
1 TA
57662585 CATTTATTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 4 0.20
21 9 0.45
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (18 bp):
TATTGTTATTATTATTTT
Found at i:57668150 original size:39 final size:40
Alignment explanation
Indices: 57668105--57668215 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
57668095 CGGGGTTTAG
* * *
57668105 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
57668144 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
57668184 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
57668216 ATCTTAGTCC
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:57668175 original size:40 final size:40
Alignment explanation
Indices: 57668105--57668313 Score: 168
Period size: 41 Copynumber: 5.2 Consensus size: 40
57668095 CGGGGTTTAG
** * *
57668105 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * *
57668144 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * **
57668184 CCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * * **
57668224 CCGGATGTAGTCGCTTATCACAAAAGCCTTCGGATCTTAGT
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAAC
* * * * * *
57668265 CCGAATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAAC
57668306 CCGGATAT
1 CCGGATAT
57668314 CATTCGAGTA
Statistics
Matches: 144, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
39 15 0.10
40 63 0.44
41 66 0.46
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:57668258 original size:41 final size:41
Alignment explanation
Indices: 57668128--57668311 Score: 205
Period size: 41 Copynumber: 4.5 Consensus size: 41
57668118 CTCGCACAAG
* * * * * * *
57668128 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATGTAGTCGCTTAGCACAAAA
* *
57668168 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATGTAGTCGCTTAGCACAAAA
* *
57668208 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTATCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATGTAGTCGCTTAGCACAAAA
* *
57668249 GCCTTC-GGATCTTAGTCCGAATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATGTAGTCGCTTAGCACAAAA
57668290 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
57668312 ATCATTCGAG
Statistics
Matches: 128, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 3 0.02
40 59 0.46
41 63 0.49
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATGTAGTCGCTTAGCACAAAA
Found at i:57670426 original size:50 final size:52
Alignment explanation
Indices: 57670371--57670506 Score: 181
Period size: 51 Copynumber: 2.7 Consensus size: 52
57670361 TCTAGTAAGC
* *
57670371 ATAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CTATCTGATAC-A
1 ATAGTAGCCTGCACTTAGTAGTACACACGTGACCTGAAGCTATCGGATACGA
* * * *
57670420 AGTAGTAGCCTGCACTTAGTAGTACACACGTGA-TTGAAGTTATCGGGTACGC
1 A-TAGTAGCCTGCACTTAGTAGTACACACGTGACCTGAAGCTATCGGATACGA
57670472 ATAGTAGCCTGCACTTAGTAGTACACACGTGACCT
1 ATAGTAGCCTGCACTTAGTAGTACACACGTGACCT
57670507 CACAATAGAT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
49 2 0.03
50 32 0.43
51 39 0.52
52 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (52 bp):
ATAGTAGCCTGCACTTAGTAGTACACACGTGACCTGAAGCTATCGGATACGA
Found at i:57672007 original size:3 final size:3
Alignment explanation
Indices: 57671999--57672032 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
57671989 TTATAGTCTA
57671999 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
57672033 ACTAATGTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:57673882 original size:18 final size:18
Alignment explanation
Indices: 57673859--57673904 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
57673849 CAAGGTCACG
57673859 ATCAATAGT-GTCACTAGC
1 ATCAATA-TCGTCACTAGC
*
57673877 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTAGC
57673895 ATCAATATCG
1 ATCAATATCG
57673905 ATATCATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 1 0.04
18 25 0.96
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30
Consensus pattern (18 bp):
ATCAATATCGTCACTAGC
Found at i:57673909 original size:15 final size:17
Alignment explanation
Indices: 57673870--57673914 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
57673860 TCAATAGTGT
*
57673870 CACTAGCATCAATATCG
1 CACTATCATCAATATCG
57673887 TCACTATCATCAATATCG
1 -CACTATCATCAATATCG
57673905 -A-TATCATCAA
1 CACTATCATCAA
57673915 AAGAAAACCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 9 0.35
16 1 0.04
18 16 0.62
ACGTcount: A:0.38, C:0.27, G:0.07, T:0.29
Consensus pattern (17 bp):
CACTATCATCAATATCG
Found at i:57676952 original size:25 final size:24
Alignment explanation
Indices: 57676895--57676952 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
57676885 TTCCTGCTAC
* *
57676895 ATGGCCCTTTGTGAGCTTCCTGAT
1 ATGGCTCTTTGTGAACTTCCTGAT
*
57676919 ATGGTTCTTTGTGAACTTCCCT-ATT
1 ATGGCTCTTTGTGAACTT-CCTGA-T
57676944 ATGGCTCTT
1 ATGGCTCTT
57676953 ATGAGCTTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 16 0.57
25 12 0.43
ACGTcount: A:0.14, C:0.22, G:0.21, T:0.43
Consensus pattern (24 bp):
ATGGCTCTTTGTGAACTTCCTGAT
Found at i:57685774 original size:13 final size:15
Alignment explanation
Indices: 57685756--57685787 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
57685746 TTTATTCATC
57685756 AATCTCTT-CCTC-A
1 AATCTCTTGCCTCTA
57685769 AATCTCTTGCCTCTA
1 AATCTCTTGCCTCTA
57685784 AATC
1 AATC
57685788 AGCTTTTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 8 0.47
14 4 0.24
15 5 0.29
ACGTcount: A:0.25, C:0.34, G:0.03, T:0.38
Consensus pattern (15 bp):
AATCTCTTGCCTCTA
Found at i:57692067 original size:13 final size:14
Alignment explanation
Indices: 57692049--57692077 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
57692039 CTTATGTGTT
57692049 TTTAAAGGTT-ATA
1 TTTAAAGGTTAATA
57692062 TTTAAAGGTTAATA
1 TTTAAAGGTTAATA
57692076 TT
1 TT
57692078 GGTAATTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (14 bp):
TTTAAAGGTTAATA
Found at i:57697933 original size:17 final size:17
Alignment explanation
Indices: 57697908--57697949 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
57697898 AAGTAAACAA
57697908 AGTAAGCTA-TAAAGCTT
1 AGTAAGCTATTAAA-CTT
*
57697925 AGTATGCTATTAAACTT
1 AGTAAGCTATTAAACTT
57697942 AGTAAGCT
1 AGTAAGCT
57697950 CGTATGATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (17 bp):
AGTAAGCTATTAAACTT
Found at i:57710943 original size:27 final size:27
Alignment explanation
Indices: 57710857--57710944 Score: 77
Period size: 27 Copynumber: 3.3 Consensus size: 27
57710847 CCGATTTGTA
* * * * *
57710857 AAAATTACCGAAATACTCTTGTAGTGT
1 AAAATGACCGTAATACCCCTGTAGGGT
* * *
57710884 AAAACGATCGTAATGCCCCTGTAGGGT
1 AAAATGACCGTAATACCCCTGTAGGGT
* *
57710911 AAAATGACCGTAATACCTCTGTATGGT
1 AAAATGACCGTAATACCCCTGTAGGGT
*
57710938 AGAATGA
1 AAAATGA
57710945 TGATTATGCT
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
AAAATGACCGTAATACCCCTGTAGGGT
Found at i:57713544 original size:22 final size:22
Alignment explanation
Indices: 57713502--57713545 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
57713492 AATTATTTAC
* *
57713502 GACTAAAGTATAGCGTTCATAT
1 GACTAAAGAATAGCGTGCATAT
57713524 GACTAAATGAATAGC-TGCATAT
1 GACTAAA-GAATAGCGTGCATAT
57713546 ACGCATATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (22 bp):
GACTAAAGAATAGCGTGCATAT
Found at i:57713846 original size:40 final size:40
Alignment explanation
Indices: 57713772--57714033 Score: 420
Period size: 40 Copynumber: 6.6 Consensus size: 40
57713762 AACCCAAGTA
* * *
57713772 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAAAG
* * *
57713811 CCTTCGGGTCTTATCCCAGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
* * *
57713851 CCTTCGGGACTTAGCCCGGATATAGTCACTAGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
57713891 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
57713931 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
57713971 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
57714011 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
57714034 CATTCGAATA
Statistics
Matches: 206, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
39 11 0.05
40 192 0.93
41 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAAAG
Found at i:57717659 original size:26 final size:27
Alignment explanation
Indices: 57717598--57717666 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
57717588 GAAATATGAT
* * *
57717598 TGTAGTGTAAAATGACTGTAATGCCCC
1 TGTAGGGTAAAATGACCGTAATGACCC
57717625 TGTAGGGTAAAATGACCGTAAT-ACCC
1 TGTAGGGTAAAATGACCGTAATGACCC
* *
57717651 TGTATGGTAGAATGAC
1 TGTAGGGTAAAATGAC
57717667 GATTATGCTG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 17 0.46
27 20 0.54
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (27 bp):
TGTAGGGTAAAATGACCGTAATGACCC
Found at i:57719398 original size:48 final size:48
Alignment explanation
Indices: 57719075--57719387 Score: 452
Period size: 48 Copynumber: 6.5 Consensus size: 48
57719065 TAGAGTACCA
* * *
57719075 ATGCCATGTCCCCGACATGGTCTTACA-T-GAATTCACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA--CATATATCATCGCCG
* *
57719123 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * *
57719171 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATTGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
* * * *
57719219 ATACCATGTCCCAAACATGGTCTTACACTGGTACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
57719267 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
*
57719315 ATGCCATGTCCCAAACATGGTCTTACA-TAGGCACATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GGCACATATATCATCGCCG
*
57719363 ATCCCATGTCCCAGACATGGTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
57719388 TATAGGCACA
Statistics
Matches: 242, Mismatches: 20, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
47 1 0.00
48 238 0.98
49 1 0.00
50 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCGCCG
Found at i:57724226 original size:31 final size:32
Alignment explanation
Indices: 57724183--57724268 Score: 129
Period size: 31 Copynumber: 2.7 Consensus size: 32
57724173 TCAATATGCT
*
57724183 AATTTTTTTTAATCAATTCTAATTTCTTCAAG
1 AATTTTTATTAATCAATTCTAATTTCTTCAAG
*
57724215 -GTTTTTATTAATCAATTCTAATTTCTTCAAG
1 AATTTTTATTAATCAATTCTAATTTCTTCAAG
*
57724246 AATTTATATTAATCAATCTCTAA
1 AATTTTTATTAATCAAT-TCTAA
57724269 AAATTATAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
31 29 0.60
32 14 0.29
33 5 0.10
ACGTcount: A:0.34, C:0.13, G:0.03, T:0.50
Consensus pattern (32 bp):
AATTTTTATTAATCAATTCTAATTTCTTCAAG
Found at i:57726286 original size:46 final size:45
Alignment explanation
Indices: 57726199--57726372 Score: 152
Period size: 46 Copynumber: 3.8 Consensus size: 45
57726189 ACATCTCGCA
* *
57726199 GCCGATGCATGTCCCAGACATGTTTTACACTAGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCT-CGTCTCGAG
* * *
57726245 GCCGATGCATGTCCCAGATATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-CTCGTCTCGAG
* * * * * * *
57726291 GTCGATACAATGTCCAAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GCCGATGC-ATGTCCCAGACAT-GTCTTACACTAGC-CTCGT-CTCGAG
* * *
57726339 GTCGATGCATGTTCTAGACATGTCTTACACTAGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
57726373 TCACAACAAG
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
46 57 0.55
47 23 0.22
48 23 0.22
49 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCCTCGTCTCGAG
Found at i:57728068 original size:20 final size:17
Alignment explanation
Indices: 57728043--57728082 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
57728033 TGAGAGATTT
57728043 ATTTATTTTTATATAAACTA
1 ATTTA-TTTTATA-AAA-TA
57728063 ATTTATTTTATAAAATA
1 ATTTATTTTATAAAATA
57728080 ATT
1 ATT
57728083 CCTTTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 3 0.15
19 7 0.35
20 5 0.25
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTATTTTATAAAATA
Found at i:57729617 original size:15 final size:15
Alignment explanation
Indices: 57729604--57729642 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 15
57729594 TTATTTTATT
57729604 TTTTGAATTTTTATAA
1 TTTT-AATTTTTATAA
57729620 TTTTAATTTTTTATATA
1 TTTTAA-TTTTTATA-A
57729637 TTTTAA
1 TTTTAA
57729643 ATTATCTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 2 0.10
16 12 0.57
17 7 0.33
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTAATTTTTATAA
Found at i:57729630 original size:16 final size:17
Alignment explanation
Indices: 57729611--57729642 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
57729601 ATTTTTTGAA
57729611 TTTTTATA-ATTTTAAT
1 TTTTTATATATTTTAAT
57729627 TTTTTATATATTTTAA
1 TTTTTATATATTTTAA
57729643 ATTATCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTTATATATTTTAAT
Found at i:57730764 original size:2 final size:2
Alignment explanation
Indices: 57730757--57730791 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
57730747 TTGAAGACAA
57730757 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
57730792 AGGATGAGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:57733998 original size:29 final size:30
Alignment explanation
Indices: 57733954--57734012 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
57733944 TTCCCGAGCC
*
57733954 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
57733984 TAGGGG-AAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
57734013 CATATTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:57737650 original size:46 final size:46
Alignment explanation
Indices: 57737578--57737802 Score: 207
Period size: 47 Copynumber: 4.8 Consensus size: 46
57737568 ATTTGTTTGT
* *
57737578 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCACATT-ATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTGATGA
*
57737624 GAGCCAGTGTAAGACCATGT-TGGGACATGGCATCGGCATTGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATT--GATGA
* *
57737671 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCTGCTACA-AGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTGATGA
* * * *
57737717 CAGTCAGTGTAAAACCATGTCTCGGACATGGCATCGAC-TTGA-GATA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATG--A
57737763 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACA
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACA
57737803 CCTTACCCAT
Statistics
Matches: 147, Mismatches: 16, Indels: 30
0.76 0.08 0.16
Matches are distributed among these distances:
44 5 0.03
45 4 0.03
46 47 0.32
47 84 0.57
48 5 0.03
49 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATGA
Found at i:57737671 original size:47 final size:47
Alignment explanation
Indices: 57737620--57737799 Score: 224
Period size: 47 Copynumber: 3.9 Consensus size: 47
57737610 CAGCCACATT
57737620 ATGAGAGCCAGTGTAAGACCATGT-TGGGACATGGCATCGGCATTGAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAG
* * **
57737667 ATGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCTGCTACAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAG
* * * * *
57737713 ATGACAGTCAGTGTAAAACCATGTCTCGGACATGGCATCGACTTGAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAG
57737760 AT-ATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 ATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
57737800 ACACCTTACC
Statistics
Matches: 111, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 29 0.26
47 74 0.67
48 7 0.06
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAG
Found at i:57737759 original size:93 final size:93
Alignment explanation
Indices: 57737577--57737798 Score: 295
Period size: 93 Copynumber: 2.4 Consensus size: 93
57737567 CATTTGTTTG
* ** * *
57737577 TGAGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCAT
1 TGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGACAGCCAGTGTAAAACCAT
* *
57737642 GTTGGGACATGGCATCGGCATTGAGATGA
66 GTTCGGACATGGCATCGACATTGAGAT-A
* * *
57737671 -GAGCTAGTGTAAGACATGTCTGGGACATGCATCTGCTACAAGATGACAGTCAGTGTAAAACCAT
1 TGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGACAGCCAGTGTAAAACCAT
57737735 GTCTCGGACATGGCATCGAC-TTGAGATA
66 GT-TCGGACATGGCATCGACATTGAGATA
*
57737763 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 TGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
57737799 GACACCTTAC
Statistics
Matches: 113, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
92 1 0.01
93 78 0.69
94 29 0.26
95 5 0.04
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (93 bp):
TGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAAGATGACAGCCAGTGTAAAACCAT
GTTCGGACATGGCATCGACATTGAGATA
Found at i:57743594 original size:16 final size:16
Alignment explanation
Indices: 57743575--57743605 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57743565 CTTTTTCACT
57743575 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
57743591 TACTTACTTACTTAA
1 TACTCACTTACTTAA
57743606 TAAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:57743611 original size:20 final size:20
Alignment explanation
Indices: 57743572--57743611 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
57743562 AAACTTTTTC
* *
57743572 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATAAAAT
*
57743592 ACTTACTTACTTAATAAAAT
1 ACTTACTCACTTAATAAAAT
57743612 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATAAAAT
Found at i:57743982 original size:55 final size:53
Alignment explanation
Indices: 57743844--57744051 Score: 213
Period size: 55 Copynumber: 3.8 Consensus size: 53
57743834 ATCCTTTTGA
* * * * *
57743844 AACTTACCATTTCCATGTCTTGACATGCTCTTACATGATATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAG
* * *
57743897 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG
* * * * *
57743951 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAG
*
57744005 AACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
57744052 AAACCCTAAT
Statistics
Matches: 127, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
52 2 0.02
53 43 0.34
54 9 0.07
55 71 0.56
56 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG
Found at i:57746714 original size:20 final size:20
Alignment explanation
Indices: 57746689--57746737 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
57746679 CATGAAAAAT
*
57746689 TTTGTGAGCTAATTTTAATG
1 TTTGTGAGCTAATTTTAACG
57746709 TTTGTGAGCTAATTTTAACG
1 TTTGTGAGCTAATTTTAACG
57746729 TTTGTGAGC
1 TTTGTGAGC
57746738 CCAATAGCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.22, C:0.08, G:0.22, T:0.47
Consensus pattern (20 bp):
TTTGTGAGCTAATTTTAACG
Found at i:57747877 original size:47 final size:47
Alignment explanation
Indices: 57747804--57747932 Score: 181
Period size: 47 Copynumber: 2.7 Consensus size: 47
57747794 ATTTGTTTGT
* *
57747804 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCACGA-GATGA
*
57747850 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCACGAGATGA
* *
57747897 CAGTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCG
57747933 ACACCTTACC
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
46 13 0.17
47 55 0.73
48 7 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCACGAGATGA
Found at i:57756399 original size:24 final size:24
Alignment explanation
Indices: 57756370--57756503 Score: 198
Period size: 24 Copynumber: 5.6 Consensus size: 24
57756360 AGGAAATTCA
* * *
57756370 CACACATAGTGCCATGCTAACCCG
1 CACACATAGTGCCATTCAAATCCG
* *
57756394 CACACATAGTGCC-TTGCTAATCCA
1 CACACATAGTGCCATT-CAAATCCG
*
57756418 CACACGTAGTGCCATTCAAATCCG
1 CACACATAGTGCCATTCAAATCCG
57756442 CACACATAGTGCCATTCAAATCCG
1 CACACATAGTGCCATTCAAATCCG
57756466 CACACATAGTGCCATTCAAATCCG
1 CACACATAGTGCCATTCAAATCCG
57756490 CACACATAGTGCCA
1 CACACATAGTGCCA
57756504 ATGTCATTTC
Statistics
Matches: 101, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
23 1 0.01
24 98 0.97
25 2 0.02
ACGTcount: A:0.31, C:0.34, G:0.14, T:0.20
Consensus pattern (24 bp):
CACACATAGTGCCATTCAAATCCG
Found at i:57757845 original size:17 final size:17
Alignment explanation
Indices: 57757823--57757858 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
57757813 CCCCACTTAA
*
57757823 TATTTTATAACTTATTT
1 TATTTTATAACATATTT
57757840 TATTTTATAACATATTT
1 TATTTTATAACATATTT
57757857 TA
1 TA
57757859 AATATATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (17 bp):
TATTTTATAACATATTT
Found at i:57773455 original size:24 final size:24
Alignment explanation
Indices: 57773426--57773492 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
57773416 AGGAAATTCA
*
57773426 CACACATAGTGCCATGCTAACCCG
1 CACACATAGTGCCATGCAAACCCG
* *
57773450 CACACATAGTGCCATTCAAATCCG
1 CACACATAGTGCCATGCAAACCCG
57773474 CACACATAGTGCCAATGCA
1 CACACATAGTGCC-ATGCA
57773493 TTTCATTATA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
24 34 0.89
25 4 0.11
ACGTcount: A:0.33, C:0.34, G:0.15, T:0.18
Consensus pattern (24 bp):
CACACATAGTGCCATGCAAACCCG
Found at i:57774824 original size:17 final size:17
Alignment explanation
Indices: 57774802--57774835 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
57774792 CCCCACTTAA
*
57774802 TATATTATAACTTATTT
1 TATATTATAACATATTT
57774819 TATATTATAACATATTT
1 TATATTATAACATATTT
57774836 CAAATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:57777969 original size:18 final size:18
Alignment explanation
Indices: 57777946--57777982 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
57777936 CTATTTTTCG
57777946 AGCCTTTGGTCACCCTCT
1 AGCCTTTGGTCACCCTCT
57777964 AGCCTTTGGTCACCCTCT
1 AGCCTTTGGTCACCCTCT
57777982 A
1 A
57777983 TCATCCATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.14, C:0.38, G:0.16, T:0.32
Consensus pattern (18 bp):
AGCCTTTGGTCACCCTCT
Found at i:57787657 original size:48 final size:48
Alignment explanation
Indices: 57787599--57787888 Score: 492
Period size: 48 Copynumber: 6.0 Consensus size: 48
57787589 ATATACACAC
* * *
57787599 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
57787647 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
57787695 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
57787743 ATCTCATACATATTTCACACTAGCCATTCGGCCTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
57787791 ATCTCATATATATTTCAC-CTTAGCCATACGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACAC-TAGCCATTCGGCTTTACCACATATACAT
*
57787839 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
57787887 AT
1 AT
57787889 TTGTCTTGTA
Statistics
Matches: 230, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
47 1 0.00
48 228 0.99
49 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:57797384 original size:40 final size:41
Alignment explanation
Indices: 57797299--57797394 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 41
57797289 GAATTTGTTT
*
57797299 GGCACTTAGTGTGCG-ATTCAAGATAGCTTCGGCTATTTAA
1 GGCACTTAGTGTGCGAATTCAAGATAGCTTCGGCTATATAA
* ** **
57797339 AGCACTTAGTGTGCGAATTGGA-ATAGCTTCGGCTATATGC
1 GGCACTTAGTGTGCGAATTCAAGATAGCTTCGGCTATATAA
*
57797379 GGCACTAAGTGTGCGA
1 GGCACTTAGTGTGCGA
57797395 TACTGAGAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 43 0.91
41 4 0.09
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (41 bp):
GGCACTTAGTGTGCGAATTCAAGATAGCTTCGGCTATATAA
Found at i:57802562 original size:22 final size:21
Alignment explanation
Indices: 57802522--57802562 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
57802512 CACTTGACAT
*
57802522 AGGGGCACACGCCCATGTGGG
1 AGGGGCACACACCCATGTGGG
*
57802543 AGGGGCAACACACCCCTGTG
1 AGGGGC-ACACACCCATGTG
57802563 AGCATTCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.22, C:0.32, G:0.37, T:0.10
Consensus pattern (21 bp):
AGGGGCACACACCCATGTGGG
Found at i:57802935 original size:35 final size:35
Alignment explanation
Indices: 57802889--57802967 Score: 140
Period size: 35 Copynumber: 2.3 Consensus size: 35
57802879 TTTATAAATT
57802889 CAAAGTGAATGTTAGCCATCACTAAAGGCTTAATA
1 CAAAGTGAATGTTAGCCATCACTAAAGGCTTAATA
*
57802924 CAAAGTGAATGTTAGCCATCATTAAAGGCTTAATA
1 CAAAGTGAATGTTAGCCATCACTAAAGGCTTAATA
*
57802959 CAAATTGAA
1 CAAAGTGAA
57802968 GGGTTTCCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (35 bp):
CAAAGTGAATGTTAGCCATCACTAAAGGCTTAATA
Found at i:57803564 original size:47 final size:46
Alignment explanation
Indices: 57803513--57803724 Score: 173
Period size: 46 Copynumber: 4.5 Consensus size: 46
57803503 TGATGCCACA
*
57803513 TCCCAGACATGGTCTTACACT-GACTATCATCTCGTAGCCGATGCATG
1 TCCCAGACAT-GTCTTACACTAG-CTCTCATCTCGTAGCCGATGCATG
* * * *
57803560 TCCCAAACATTTCTTACACTAGCT-TACGTCTCG-AGCCAGTTGCATG
1 TCCCAGACATGTCTTACACTAGCTCT-CATCTCGTAGCC-GATGCATG
* * * * *
57803606 TCCTAGACATGTCTTACACTAGCCCTCGTCTC-AATGCCAATGCCATG
1 TCCCAGACATGTCTTACACTAGCTCTCATCTCGTA-GCCGATG-CATG
* * * * *
57803653 TCCCAGACATGGCCTTACACTGGCTCTCATAAT-GTGGCTGATGCATG
1 TCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGTAGCCGATGCATG
*
57803700 TCCCAGACATGTCTTACATTAGCTC
1 TCCCAGACATGTCTTACACTAGCTC
57803725 ACACACGAAT
Statistics
Matches: 132, Mismatches: 23, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
45 5 0.04
46 65 0.49
47 41 0.31
48 20 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.29
Consensus pattern (46 bp):
TCCCAGACATGTCTTACACTAGCTCTCATCTCGTAGCCGATGCATG
Found at i:57805805 original size:25 final size:26
Alignment explanation
Indices: 57805759--57805819 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 26
57805749 CTTATGAGAT
57805759 ATATTCGGTAAGCTCATACGAGCTGA-
1 ATATT-GGTAAGCTCATACGAGCTGAG
* *
57805785 ATATTGGTAAGCTCCCT-CGAGTTGAG
1 ATATTGGTAAGCT-CATACGAGCTGAG
57805811 A-ATTGGTAA
1 ATATTGGTAA
57805820 CCCTAATGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 23 0.74
26 8 0.26
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (26 bp):
ATATTGGTAAGCTCATACGAGCTGAG
Done.