Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 178 of 325
Found at i:57805904 original size:14 final size:14
Alignment explanation
Indices: 57805885--57805921 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
57805875 GTAATCGTCG
57805885 TACGTCATTAGATT
1 TACGTCATTAGATT
57805899 TACGTCATTAGATT
1 TACGTCATTAGATT
*
57805913 TACATCATT
1 TACGTCATT
57805922 TCATAACACG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (14 bp):
TACGTCATTAGATT
Found at i:57806093 original size:16 final size:17
Alignment explanation
Indices: 57806072--57806103 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
57806062 ATTTAGGGGC
57806072 ATTTTGTT-AATTTTCT
1 ATTTTGTTAAATTTTCT
57806088 ATTTTGTTAAATTTTC
1 ATTTTGTTAAATTTTC
57806104 ACCCGATCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.22, C:0.06, G:0.06, T:0.66
Consensus pattern (17 bp):
ATTTTGTTAAATTTTCT
Found at i:57810640 original size:46 final size:44
Alignment explanation
Indices: 57810495--57810708 Score: 155
Period size: 46 Copynumber: 4.6 Consensus size: 44
57810485 TTTGTTTGTG
* * * ***
57810495 AGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCACATTATGA
1 AGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGGGA-GA
* * * *
57810540 GAGCCAATGTAAGATCATGTCTGGGACATGGTATCGGCATTGAGAGAGA
1 -AGCTAGTGTAAGA-CATGTCTGGGACAT-GTATCGGCCTCG-G-GAGA
*
57810589 A-CTAGTGTAAGACATGTCTGGGACATGTATGGGCCTCGGGACGTA
1 AGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGGGA-G-A
* * *
57810634 AGCTAGTGTAAGACATGTCTAGGACATGCATCGG-CTACGAGATGA
1 AGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCT-CGGGA-GA
*
57810679 CAG-TCAGTGTAAGACCATGTCTAGGACATG
1 -AGCT-AGTGTAAGA-CATGTCTGGGACATG
57810709 ACATCGACTT
Statistics
Matches: 137, Mismatches: 20, Indels: 21
0.77 0.11 0.12
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 15 0.11
46 70 0.51
47 38 0.28
48 7 0.05
49 2 0.01
50 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (44 bp):
AGCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTCGGGAGA
Found at i:57810707 original size:47 final size:47
Alignment explanation
Indices: 57810638--57810755 Score: 152
Period size: 47 Copynumber: 2.5 Consensus size: 47
57810628 GACGTAAGCT
* *
57810638 AGTGTAAGA-CATGTCTAGGACATG-CATCGGCTACGAGATGA-CAGTC
1 AGTGTAAGACCATGTCTAGGACATGACATCGACT-CGAGAT-ATCAGCC
* *
57810684 AGTGTAAGACCATGTCTAGGACATGACATCGACTTGAGATATGAGCC
1 AGTGTAAGACCATGTCTAGGACATGACATCGACTCGAGATATCAGCC
*
57810731 AGTGTAAGACCATGTTTAGGACATG
1 AGTGTAAGACCATGTCTAGGACATG
57810756 GCATTGACAC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
46 10 0.16
47 47 0.73
48 7 0.11
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTAGGACATGACATCGACTCGAGATATCAGCC
Found at i:57814664 original size:40 final size:40
Alignment explanation
Indices: 57814590--57814781 Score: 248
Period size: 40 Copynumber: 4.8 Consensus size: 40
57814580 GACTTAACCC
57814590 AACTCGCACGAATGCCTTC-GGACTTAACCCGGATTTAAT
1 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAAT
57814629 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAAT
1 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAAT
*
57814669 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGT
1 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAAT
* * * * *
57814709 -ACTCGCACAAAGGCCTTC-GGATCTTAATCCGGATATATT
1 AACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAAT
* * * *
57814748 CACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AAC-TCGCACGAATGCCTTCGGGACTTAACCCGGA
57814782 CAGCATTCAA
Statistics
Matches: 138, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
38 3 0.02
39 49 0.36
40 78 0.57
41 8 0.06
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAAT
Found at i:57814725 original size:79 final size:80
Alignment explanation
Indices: 57814590--57814781 Score: 248
Period size: 79 Copynumber: 2.4 Consensus size: 80
57814580 GACTTAACCC
* *
57814590 AACTCGCACGAATGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGA-C
1 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTC-GGATC
*
57814653 TTAACCCGGATTTAAT
65 TTAACCCGGATATAAT
*
57814669 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAAAGGCCTTCGGATCT
1 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGATCT
* *
57814733 TAATCCGGATATATT
66 TAACCCGGATATAAT
* * * *
57814748 CACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 AAC-TCGCACGAATGCCTTCGGGACTTAACCCGGA
57814782 CAGCATTCAA
Statistics
Matches: 100, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.03
79 73 0.73
80 24 0.24
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGATCT
TAACCCGGATATAAT
Found at i:57822518 original size:40 final size:40
Alignment explanation
Indices: 57822375--57822676 Score: 439
Period size: 40 Copynumber: 7.6 Consensus size: 40
57822365 TCCTCGTTCA
* * * * *
57822375 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
57822414 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
57822454 ACTGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
57822493 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
57822533 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
57822573 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
57822613 AATGCCTTCGGGACTTAACCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCACG
* *
57822653 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
57822677 CAGCATTCAA
Statistics
Matches: 243, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 70 0.29
40 168 0.69
41 5 0.02
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:57846113 original size:27 final size:26
Alignment explanation
Indices: 57846065--57846124 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
57846055 GCGAGGCTGC
*
57846065 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
57846092 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
57846118 CAGATAT
1 CAGATAT
57846125 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:57846229 original size:67 final size:69
Alignment explanation
Indices: 57846092--57846233 Score: 180
Period size: 67 Copynumber: 2.1 Consensus size: 69
57846082 TCACCAGATA
* * * * *
57846092 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACTAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAGA-ATATATA-GTGGCGAAGCCACCAAATTGCAGCGA
57846157 CGCTGC
64 CGCTGC
* * *
57846163 CAGATATTGTGACGAAGTCACCAGAACAG-ATATATA-TGGCGAGGCCACCAAATTGCAGCGAGG
1 CAGATATTGTGACGAAGCCACCAGAACAGAATATATAGTGGCGAAGCCACCAAATTGCAGCGACG
57846226 CTGC
66 CTGC
57846230 CAGA
1 CAGA
57846234 ACACTTCCTC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
67 31 0.49
69 7 0.11
71 25 0.40
ACGTcount: A:0.32, C:0.23, G:0.27, T:0.19
Consensus pattern (69 bp):
CAGATATTGTGACGAAGCCACCAGAACAGAATATATAGTGGCGAAGCCACCAAATTGCAGCGACG
CTGC
Found at i:57848707 original size:28 final size:28
Alignment explanation
Indices: 57848672--57848727 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
57848662 CGTAAAGTCG
57848672 CACTATTTCCGCCACATACAGTTTCGCT
1 CACTATTTCCGCCACATACAGTTTCGCT
57848700 CACTATTTCCGCCACATACAGTTTCGCT
1 CACTATTTCCGCCACATACAGTTTCGCT
57848728 AACTTCTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.21, C:0.36, G:0.11, T:0.32
Consensus pattern (28 bp):
CACTATTTCCGCCACATACAGTTTCGCT
Found at i:57852348 original size:27 final size:26
Alignment explanation
Indices: 57852300--57852359 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
57852290 GCGAGGCTGC
*
57852300 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
57852327 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
57852353 CAGATAT
1 CAGATAT
57852360 ATATATGGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:57852462 original size:67 final size:68
Alignment explanation
Indices: 57852327--57852465 Score: 190
Period size: 67 Copynumber: 2.0 Consensus size: 68
57852317 TCACCAGATA
* * *
57852327 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGGCAAAGCCACCAGATTGCAGCGACG
1 CAGATATTGTGACAAAGCCACCAGAACAGA-ATATATATGGCAAAGCCACCAGATTGCAGCGACG
57852392 CTGC
65 CTGC
* * * * *
57852396 CAGATATTGTGACAAAGTCACCAGAACAG-ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGC
1 CAGATATTGTGACAAAGCCACCAGAACAGAATATATATGGCAAAGCCACCAGATTGCAGCGACGC
57852460 TGC
66 TGC
57852463 CAG
1 CAG
57852466 GCCGCTTGCT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
67 37 0.60
69 25 0.40
ACGTcount: A:0.32, C:0.24, G:0.27, T:0.18
Consensus pattern (68 bp):
CAGATATTGTGACAAAGCCACCAGAACAGAATATATATGGCAAAGCCACCAGATTGCAGCGACGC
TGC
Found at i:57858061 original size:22 final size:21
Alignment explanation
Indices: 57858015--57858063 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
57858005 ATTCTTCTTC
*
57858015 ATTTTTCTCTCAACTCCACAC
1 ATTTTTCTCTCAACTCCACAA
*
57858036 ATTTTTCTCTCCAATTCC-CATA
1 ATTTTTCTCT-CAACTCCACA-A
57858058 ATTTTT
1 ATTTTT
57858064 TTAGCCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTTTTCTCTCAACTCCACAA
Found at i:57860150 original size:30 final size:30
Alignment explanation
Indices: 57860094--57860152 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
57860084 TCTGAGCCTT
*
57860094 GGGGAAAAAGTGTAAATATGTAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* *
57860124 GGGGCAAAAA-TGTAAATTTGCCAAAGTTT
1 GGGG-AAAAAGTGTAAATATGCAAAAGTTT
57860153 GAGTGAAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.27
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:57870732 original size:27 final size:26
Alignment explanation
Indices: 57870684--57870758 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
57870674 GCGAGGCTGC
* *
57870684 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGGCGAAGCCACCAGA-A
* *
57870711 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGGCGAAGCCACCAGAA
*
57870737 CATATATATGTGGCGAAGCCAC
1 CAGATAT-TGTGGCGAAGCCAC
57870759 TAGATTGCAG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 7 0.17
27 33 0.82
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (26 bp):
CAGATATTGTGGCGAAGCCACCAGAA
Found at i:57878086 original size:71 final size:67
Alignment explanation
Indices: 57878011--57878152 Score: 194
Period size: 67 Copynumber: 2.1 Consensus size: 67
57878001 TCACCAGATA
* * *
57878011 CAGATATTGTGGCTAGGCCACCAAAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGTGA
1 CAGATATTGTGACTAAGCCACCAAAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
57878076 GGCTGC
62 GGCTGC
* * *
57878082 CAGATATTGTGACTAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACTAAGCCACCAAAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
57878147 GC
66 GC
57878149 CAGA
1 CAGA
57878153 ACGCTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 40 0.62
71 25 0.38
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACTAAGCCACCAAAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:57880340 original size:20 final size:19
Alignment explanation
Indices: 57880317--57880363 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
57880307 ATTCCAATCT
57880317 TTTATTTA-TT-GTT-CTA
1 TTTATTTATTTAGTTACTA
*
57880333 TTTATTTATCTTAGTTATTA
1 TTTATTTAT-TTAGTTACTA
57880353 TTTATTTATTT
1 TTTATTTATTT
57880364 TATTTGTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 8 0.31
18 2 0.08
19 5 0.19
20 11 0.42
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.70
Consensus pattern (19 bp):
TTTATTTATTTAGTTACTA
Found at i:57891985 original size:7 final size:7
Alignment explanation
Indices: 57891973--57892000 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
57891963 TTAGCCCCTA
57891973 ACATTTT
1 ACATTTT
57891980 ACATTTT
1 ACATTTT
57891987 ACATTTT
1 ACATTTT
57891994 ACATTTT
1 ACATTTT
57892001 TCACAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
ACATTTT
Found at i:57900977 original size:17 final size:16
Alignment explanation
Indices: 57900955--57900994 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 16
57900945 TGTCTTCACT
57900955 TTAGTTTAATTAGTTAA
1 TTAGTTTAATT-GTTAA
57900972 TTAG-TT--TTGTTAA
1 TTAGTTTAATTGTTAA
57900985 TTAGTTTAAT
1 TTAGTTTAAT
57900995 AAACAACCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 7
0.74 0.00 0.26
Matches are distributed among these distances:
13 9 0.45
14 4 0.20
16 3 0.15
17 4 0.20
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (16 bp):
TTAGTTTAATTGTTAA
Found at i:57902266 original size:46 final size:47
Alignment explanation
Indices: 57902180--57902272 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 47
57902170 CGAACTTACT
*
57902180 AAGCATGTAATGCTTATTCTATTTTTATTTTCCCTATTTTATAGTGC
1 AAGCATGTAATGCTTATTCTAGTTTTATTTTCCCTATTTTATAGTGC
* *
57902227 AAGCATGTAATGCTTATT-TAGTTTTATTTTCCCTGTTTTATTGTGC
1 AAGCATGTAATGCTTATTCTAGTTTTATTTTCCCTATTTTATAGTGC
57902273 TCGGAAGCTC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
46 25 0.58
47 18 0.42
ACGTcount: A:0.22, C:0.14, G:0.13, T:0.52
Consensus pattern (47 bp):
AAGCATGTAATGCTTATTCTAGTTTTATTTTCCCTATTTTATAGTGC
Found at i:57925139 original size:79 final size:80
Alignment explanation
Indices: 57925004--57925221 Score: 209
Period size: 79 Copynumber: 2.8 Consensus size: 80
57924994 AAATCACGTA
** * *
57925004 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTC-GTTCAAATGCCTTCGGGACATAGCCCGG-TT
1 CCTTCGG-ATCTTAACCCGGATATAG-TAACTCAGCACAAATGCCTTCGGG-CTTAGCCCGGAAT
*
57925064 ATAGTAACTCGCACAATTG
63 -TAGTAACTCGCACAAATG
*
57925083 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CACAAATGCCTTCGGGCTTAGCCCGGAATTA
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGCTTAGCCCGGAATTA
*
57925146 GTATCTCGCACAAATG
65 GTAACTCGCACAAATG
** * * * *
57925162 CCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCCGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTT-CGGGCTTAGCCCGGA
57925222 CATCATTCAA
Statistics
Matches: 116, Mismatches: 14, Indels: 17
0.79 0.10 0.12
Matches are distributed among these distances:
78 3 0.03
79 63 0.54
80 50 0.43
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGCTTAGCCCGGAATTAG
TAACTCGCACAAATG
Found at i:57925158 original size:39 final size:40
Alignment explanation
Indices: 57925037--57925221 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
57925027 GCTACTCGTT
*
57925037 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
57925077 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
57925117 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
57925156 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
57925197 CAAA-GCCTTCCGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57925222 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 76 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:57937213 original size:17 final size:17
Alignment explanation
Indices: 57937191--57937225 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
57937181 TTTTGGAAAA
57937191 ACTCGATTGACTAAGAC
1 ACTCGATTGACTAAGAC
57937208 ACTCGATTGACTAAGAC
1 ACTCGATTGACTAAGAC
57937225 A
1 A
57937226 ATACCCAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (17 bp):
ACTCGATTGACTAAGAC
Found at i:57941445 original size:55 final size:55
Alignment explanation
Indices: 57941386--57941490 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 55
57941376 CGTGGGCAAC
* *
57941386 ACTGACTTTTGAACACGGCCATGGCACACGCCCATGCTG-CCTATCCATGTTCAAT
1 ACTGACTTTGGAACACGGCCATGGCACACGCCCATG-TGACCTACCCATGTTCAAT
* * * *
57941441 ACTGACTTTGGGACACGGCTATGGGACACGCCCGTGTGACCTACCCATGT
1 ACTGACTTTGGAACACGGCCATGGCACACGCCCATGTGACCTACCCATGT
57941491 CCTATACTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 2 0.05
55 41 0.95
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (55 bp):
ACTGACTTTGGAACACGGCCATGGCACACGCCCATGTGACCTACCCATGTTCAAT
Found at i:57945353 original size:13 final size:13
Alignment explanation
Indices: 57945331--57945363 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
57945321 AAGGGTTTGT
57945331 TTAT-TAAACTAA
1 TTATCTAAACTAA
57945343 TTATCTAAACTAA
1 TTATCTAAACTAA
*
57945356 TTAACTAA
1 TTATCTAA
57945364 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:57948280 original size:6 final size:6
Alignment explanation
Indices: 57948269--57948349 Score: 69
Period size: 6 Copynumber: 13.7 Consensus size: 6
57948259 ATGAAAATTG
* * * *
57948269 AAAAAT AAAAAT CAAAAG AAAAAT AAGAAT -AAAAT AAATAAA ATAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA-AAT A-AAAAT
* *
57948318 AAAAAT -AAGAT -TAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
57948350 TAGGAGGATT
Statistics
Matches: 59, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
5 11 0.19
6 40 0.68
7 6 0.10
8 2 0.03
ACGTcount: A:0.78, C:0.01, G:0.04, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:57948309 original size:4 final size:5
Alignment explanation
Indices: 57948288--57948351 Score: 67
Period size: 5 Copynumber: 12.2 Consensus size: 5
57948278 AATCAAAAGA
* *
57948288 AAAAT AAGAAT AAAAT -AAAT AAAAT AAAAT AAAAAT AAGAT TAAAT AAAAAT
1 AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT -AAAAT
57948340 AAAAAT AAAAT A
1 -AAAAT AAAAT A
57948352 GGAGGATTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
4 4 0.08
5 27 0.53
6 20 0.39
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:57948315 original size:14 final size:15
Alignment explanation
Indices: 57948289--57948351 Score: 65
Period size: 16 Copynumber: 4.1 Consensus size: 15
57948279 ATCAAAAGAA
57948289 AAATAAGAATAAAAT
1 AAATAAGAATAAAAT
57948304 AAATAA-AATAAAAT
1 AAATAAGAATAAAAT
* *
57948318 AAAAATAAGATTAAATAA
1 --AAATAAGAATAAA-AT
*
57948336 AAATAAAAATAAAAT
1 AAATAAGAATAAAAT
57948351 A
1 A
57948352 GGAGGATTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
14 8 0.21
15 8 0.21
16 17 0.44
17 5 0.13
18 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (15 bp):
AAATAAGAATAAAAT
Found at i:57955617 original size:15 final size:15
Alignment explanation
Indices: 57955576--57955638 Score: 72
Period size: 15 Copynumber: 4.2 Consensus size: 15
57955566 GAAAACCAGA
*
57955576 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
* * *
57955591 ACAGAGGAATCCAAG
1 ATAAAGAAATCCAAG
*
57955606 ATAAAGATATCCAAG
1 ATAAAGAAATCCAAG
*
57955621 GTAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
57955636 ATA
1 ATA
57955639 CCATATCATA
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:57957633 original size:37 final size:37
Alignment explanation
Indices: 57957569--57957642 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
57957559 TTACAAGTCA
57957569 AAATCATTATAAGCCACATCTCATGGCTACAT-ACAAC
1 AAATCATTATAAGCCACATCTCATGGCTA-ATCACAAC
*
57957606 AAATCATTATAAGCCA-ATACAT-TTGGCTAATCACAAC
1 AAATCATTATAAGCCACAT-C-TCATGGCTAATCACAAC
57957643 GACATTGATC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
36 4 0.12
37 28 0.85
38 1 0.03
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (37 bp):
AAATCATTATAAGCCACATCTCATGGCTAATCACAAC
Found at i:57958723 original size:20 final size:20
Alignment explanation
Indices: 57958700--57958740 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
57958690 TAATCTCGTC
57958700 GAATTTCTCGAAACCTCGAT
1 GAATTTCTCGAAACCTCGAT
57958720 GAATTTCTCGAAACCTCGAT
1 GAATTTCTCGAAACCTCGAT
57958740 G
1 G
57958741 GATATCCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (20 bp):
GAATTTCTCGAAACCTCGAT
Found at i:57968383 original size:40 final size:40
Alignment explanation
Indices: 57968319--57968529 Score: 257
Period size: 40 Copynumber: 5.3 Consensus size: 40
57968309 TTCTTCGAAT
* * * *
57968319 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * * *
57968358 TTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
* *
57968398 TTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
*
57968438 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* *
57968478 TTAACCCGGATAAAATCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
57968518 TTAGCCCGGATA
1 TTAGCCCGGATA
57968530 TCATTCAAAT
Statistics
Matches: 151, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 5 0.03
40 142 0.94
41 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
Found at i:57976794 original size:40 final size:40
Alignment explanation
Indices: 57976733--57976979 Score: 336
Period size: 40 Copynumber: 6.2 Consensus size: 40
57976723 CGGAATTTAG
* * * *
57976733 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
57976773 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* *
57976813 CCGGAT-ATATCAACTAGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
57976853 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
*
57976893 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
57976933 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
57976973 CCGGATA
1 CCGGATA
57976980 TCATTCAAAT
Statistics
Matches: 188, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 182 0.97
41 4 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:57992797 original size:14 final size:14
Alignment explanation
Indices: 57992734--57992811 Score: 56
Period size: 14 Copynumber: 5.7 Consensus size: 14
57992724 GTTTAAAGAC
* *
57992734 TTTTATTTATT-AT
1 TTTTATTTTTTAAA
*
57992747 TTTTATGTTTTTACA
1 TTTTAT-TTTTTAAA
57992762 -TTTATCTTTTTAAA
1 TTTTAT-TTTTTAAA
** *
57992776 -ACTATTTTTT-TA
1 TTTTATTTTTTAAA
57992788 TTTTATTTTTTAAA
1 TTTTATTTTTTAAA
57992802 TTTTATTTTT
1 TTTTATTTTT
57992812 ACTTCATCCT
Statistics
Matches: 50, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
12 1 0.02
13 19 0.38
14 30 0.60
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.72
Consensus pattern (14 bp):
TTTTATTTTTTAAA
Found at i:57997998 original size:53 final size:54
Alignment explanation
Indices: 57997822--57998028 Score: 202
Period size: 53 Copynumber: 3.8 Consensus size: 54
57997812 ATTAGGGTTT
* * *
57997822 AAGGATACCAAGTAAGACCATGCCAA-AGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGA-CATGGCAATGGTAAGTTCTATAAGGC
* * * * * * *
57997876 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC
** * * * * * *
57997931 AAATATCCCGTGTAAAACCATGCCAAGGCATGACAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* *
57997984 AAGGATACCATGTAAGACCGTGACAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
57998029 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 33, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 42 0.36
54 36 0.31
55 40 0.34
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:58010960 original size:27 final size:27
Alignment explanation
Indices: 58010928--58011125 Score: 290
Period size: 27 Copynumber: 7.4 Consensus size: 27
58010918 AGGACATTTC
* * *
58010928 AGTCATTTTACCACATAAGGGCAAAAC
1 AGTCATTTTACCTCATGAGGGCAAAAT
* *
58010955 AATCATTTTACCTCATTAGGG-AAAAT
1 AGTCATTTTACCTCATGAGGGCAAAAT
*
58010981 AGTCATTTTACCTCATGAGGGCAAAAC
1 AGTCATTTTACCTCATGAGGGCAAAAT
*
58011008 AGTCATTTTACCTCATGAGAGCAAAAT
1 AGTCATTTTACCTCATGAGGGCAAAAT
* * *
58011035 AATCATTTTACCTTATGAGGGCAAAAC
1 AGTCATTTTACCTCATGAGGGCAAAAT
*
58011062 AGTCATTTTACCTCATAAGGGCAAAAT
1 AGTCATTTTACCTCATGAGGGCAAAAT
58011089 AGTCATTTTACCTCATGAGGGCAAAAT
1 AGTCATTTTACCTCATGAGGGCAAAAT
58011116 AGTCATTTTA
1 AGTCATTTTA
58011126 TCGTTTAGTG
Statistics
Matches: 152, Mismatches: 18, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
26 23 0.15
27 129 0.85
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (27 bp):
AGTCATTTTACCTCATGAGGGCAAAAT
Found at i:58014267 original size:10 final size:10
Alignment explanation
Indices: 58014252--58014276 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
58014242 CCAAAAAAAA
58014252 TTTATTTAAT
1 TTTATTTAAT
58014262 TTTATTTAAT
1 TTTATTTAAT
58014272 TTTAT
1 TTTAT
58014277 GGTTGGTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTATTTAAT
Found at i:58016730 original size:21 final size:20
Alignment explanation
Indices: 58016702--58016742 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
58016692 TAGTACACGG
58016702 CCTAACCACACGAGCATGTC
1 CCTAACCACACGAGCATGTC
*
58016722 CCTAGACCACACGGGCATGTC
1 CCTA-ACCACACGAGCATGTC
58016743 AGCCCTGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.27, C:0.39, G:0.20, T:0.15
Consensus pattern (20 bp):
CCTAACCACACGAGCATGTC
Found at i:58021644 original size:30 final size:30
Alignment explanation
Indices: 58021599--58021658 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
58021589 ATTTAATATG
58021599 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
58021629 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
58021659 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:58025898 original size:43 final size:43
Alignment explanation
Indices: 58025763--58025932 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
58025753 CATAAGCTTG
* * *
58025763 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATTAC-A
1 TACAATGCCAATATCCCAGACATGGTCTTACATGTAATCACAA
* * * * * *
58025804 TATCGATGTCACTGTCCCAGACAGGGTCTTACACG-AATCA-ATA
1 TA-CAATGCCAATATCCCAGACATGGTCTTACATGTAATCACA-A
*
58025847 TACGATGCCAATATCCCAGACATGG-CATTAC-TCGTAATCACAA
1 TACAATGCCAATATCCCAGACATGGTC-TTACAT-GTAATCACAA
*
58025890 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
1 TACAATGCCAATATCCCAGACATGGTCTTACATGTAATCACAA
58025933 CTCGATAACC
Statistics
Matches: 103, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
41 3 0.03
42 32 0.31
43 65 0.63
44 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (43 bp):
TACAATGCCAATATCCCAGACATGGTCTTACATGTAATCACAA
Found at i:58030056 original size:19 final size:19
Alignment explanation
Indices: 58030032--58030070 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
58030022 TTCTTGCAAG
58030032 TTAATTCTA-TTTTTATTTA
1 TTAATT-TACTTTTTATTTA
*
58030051 TTAATTTACTTTTTCTTTA
1 TTAATTTACTTTTTATTTA
58030070 T
1 T
58030071 CTTGGCAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (19 bp):
TTAATTTACTTTTTATTTA
Found at i:58038165 original size:81 final size:81
Alignment explanation
Indices: 58038061--58038235 Score: 323
Period size: 81 Copynumber: 2.1 Consensus size: 81
58038051 GTCCGGTCTT
* *
58038061 TATAAAATTATACTACTGTTCGATAGGTACACTTGCCTACATCGTGATAATAGTTAGTTTCGAGA
1 TATAAAACT-TACTACTGTTCGATAAGTACACTTGCCTACATCGTGATAATAGTTAGTTTCGAGA
58038126 ATGATTAATTATAAATA
65 ATGATTAATTATAAATA
58038143 TATAAAACTTACTACTGTTCGATAAGTACACTTGCCTACATCGTGATAATAGTTAGTTTCGAGAA
1 TATAAAACTTACTACTGTTCGATAAGTACACTTGCCTACATCGTGATAATAGTTAGTTTCGAGAA
58038208 TGATTAATTATAAATA
66 TGATTAATTATAAATA
58038224 TATAAAACTTAC
1 TATAAAACTTAC
58038236 CTGTCACGAA
Statistics
Matches: 91, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
81 83 0.91
82 8 0.09
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (81 bp):
TATAAAACTTACTACTGTTCGATAAGTACACTTGCCTACATCGTGATAATAGTTAGTTTCGAGAA
TGATTAATTATAAATA
Found at i:58044674 original size:75 final size:75
Alignment explanation
Indices: 58044585--58044730 Score: 256
Period size: 75 Copynumber: 1.9 Consensus size: 75
58044575 ATGTAAGTTT
* *
58044585 GTATGTTATAATTTCATTTCAAATGTATTTTATGTGCTTCAATATAGCATGAATTTTTATTATGT
1 GTATGTTATAATTTCATTTCAAATGTATTTTATGTGCTTCAATATAGCATGAATTGTGATTATGT
58044650 GATTACGTTC
66 GATTACGTTC
**
58044660 GTATGTTATAATTTCATTTCAAATGTATTTTATGTGCTTTGATATAGCATGAATTGTGATTATGT
1 GTATGTTATAATTTCATTTCAAATGTATTTTATGTGCTTCAATATAGCATGAATTGTGATTATGT
58044725 GATTAC
66 GATTAC
58044731 AGACAAGTTT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 67 1.00
ACGTcount: A:0.28, C:0.08, G:0.15, T:0.49
Consensus pattern (75 bp):
GTATGTTATAATTTCATTTCAAATGTATTTTATGTGCTTCAATATAGCATGAATTGTGATTATGT
GATTACGTTC
Found at i:58046316 original size:47 final size:47
Alignment explanation
Indices: 58046247--58046337 Score: 182
Period size: 47 Copynumber: 1.9 Consensus size: 47
58046237 AAGTTTCGTG
58046247 AAAGTTTATTGAACTATCGGTTTAGTCCCGAACCACTTCCAGAGTAT
1 AAAGTTTATTGAACTATCGGTTTAGTCCCGAACCACTTCCAGAGTAT
58046294 AAAGTTTATTGAACTATCGGTTTAGTCCCGAACCACTTCCAGAG
1 AAAGTTTATTGAACTATCGGTTTAGTCCCGAACCACTTCCAGAG
58046338 CATGTTTTGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (47 bp):
AAAGTTTATTGAACTATCGGTTTAGTCCCGAACCACTTCCAGAGTAT
Found at i:58049670 original size:62 final size:59
Alignment explanation
Indices: 58049598--58049714 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 59
58049588 AATAATTATC
* * * *
58049598 TTAATATTAAATTAAATTTAATGTTTATCTTATAGATAGATATACTATTAATTTAATAAGAT
1 TTAATATTAAATTAAATCTAATATCTATC-T-T-GATAAATATACTATTAATTTAATAAGAT
**
58049660 TTAATATTAAATTAAATCTAATATCTATCTTGATAAATATTGTATTAATTTAATA
1 TTAATATTAAATTAAATCTAATATCTATCTTGATAAATATACTATTAATTTAATA
58049715 TTAAAGTGAT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 21 0.43
60 1 0.02
61 1 0.02
62 26 0.53
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (59 bp):
TTAATATTAAATTAAATCTAATATCTATCTTGATAAATATACTATTAATTTAATAAGAT
Found at i:58055328 original size:31 final size:31
Alignment explanation
Indices: 58055287--58055350 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
58055277 CCTTTTCATA
*
58055287 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
58055318 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
58055349 TT
1 TT
58055351 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:58055671 original size:23 final size:24
Alignment explanation
Indices: 58055558--58055686 Score: 206
Period size: 24 Copynumber: 5.4 Consensus size: 24
58055548 CTGGAGGCCT
*
58055558 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
58055583 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
58055607 AGCCCTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
58055631 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
58055655 AGCCC-TTTAATAACTGGAGCATA
1 AGCCCTTTTAATAACTGGGGCATA
58055678 AGCCCTTTT
1 AGCCCTTTT
58055687 GCACTTCCTC
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
23 21 0.22
24 72 0.74
25 4 0.04
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:58055758 original size:9 final size:9
Alignment explanation
Indices: 58055744--58055800 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
58055734 ATCTCATGTT
58055744 CATATCATA
1 CATATCATA
*
58055753 CATATCATGTG
1 CATATCA--TA
58055764 CATATCATA
1 CATATCATA
* *
58055773 CATGTCATGTG
1 CATATCA--TA
58055784 CATATCATA
1 CATATCATA
58055793 CATATCAT
1 CATATCAT
58055801 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:58055760 original size:20 final size:20
Alignment explanation
Indices: 58055732--58055802 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
58055722 GCATTTATGA
* *
58055732 ACATCTCATGTTCATATCAT
1 ACATATCATGTGCATATCAT
58055752 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
58055772 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
58055792 ACATATCATGT
1 ACATATCATGT
58055803 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:58055878 original size:25 final size:24
Alignment explanation
Indices: 58055839--58055886 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
58055829 ATATATAAAC
* *
58055839 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAATGGTCA-TTTTA
58055864 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
58055887 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
CCTAGGGGCAAAATGGTCATTTTA
Found at i:58057071 original size:27 final size:27
Alignment explanation
Indices: 58057041--58057097 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
58057031 GGGCATATTC
58057041 GTCATTTTACCATACAGGGG-TATTACG
1 GTCATTTTACCATACAGGGGCT-TTACG
* *
58057068 GTCATTTTACCCTATAGGGGCTTTACG
1 GTCATTTTACCATACAGGGGCTTTACG
58057095 GTC
1 GTC
58057098 TTTACCTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 26 0.96
28 1 0.04
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGCTTTACG
Found at i:58057109 original size:25 final size:26
Alignment explanation
Indices: 58057041--58057112 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 26
58057031 GGGCATATTC
* *
58057041 GTCATTTTACCATACAGGGG-TATTACG
1 GTCA-TTTACCCTATAGGGGCT-TTACG
58057068 GTCATTTTACCCTATAGGGGCTTTACG
1 GTCA-TTTACCCTATAGGGGCTTTACG
58057095 GTC-TTTA-CCTAATAGGGG
1 GTCATTTACCCT-ATAGGGG
58057113 TATTTTAGTC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.07
25 11 0.27
27 26 0.63
28 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (26 bp):
GTCATTTACCCTATAGGGGCTTTACG
Found at i:58057187 original size:27 final size:27
Alignment explanation
Indices: 58057134--58057372 Score: 190
Period size: 27 Copynumber: 8.8 Consensus size: 27
58057124 TTTCGTCCTA
* * * *
58057134 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * **
58057161 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* ** * *
58057188 CAATGGTATTTCTATAATTTTTAGAAAGT
1 CAAGGGTATTTCGGTAA-TTTTACAAA-C
* * ** *
58057217 CAAGGGTATTTCTGTAACTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
58057244 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAC
** *
58057271 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
*
58057298 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
* * *
58057325 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTACAAAC
**
58057352 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTCGGTAATTTT
58057373 GTAAATCGAG
Statistics
Matches: 170, Mismatches: 40, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
27 142 0.84
28 13 0.08
29 15 0.09
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAC
Found at i:58057358 original size:81 final size:81
Alignment explanation
Indices: 58057134--58057371 Score: 214
Period size: 81 Copynumber: 2.9 Consensus size: 81
58057124 TTTCGTCCTA
* * * ** ** ** *
58057134 CAAGGGTGTTTTGGTAAATCTACAAACCAAAGGTATTTCAGTAATTTTGTAAACCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
* * *
58057199 CTA-TAATTTTTAGAAAGT
65 C-AGTAA-TTTCACAAAGC
* ***
58057217 CAAGGGTATTTCT-GTAACTTTGTA-AATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTAT
1 CAAGGGTATTT-TGGTAA-TTT-TACAAACAGGGGTATTTTGGTAATTTTACAAACCAAGGGTAT
*
58057280 TTCGGTAATTTCACAAA-C
63 TTCAGTAATTTCACAAAGC
58057298 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
*
58057363 TAGTAATTT
65 CAGTAATTT
58057372 TGTAAATCGA
Statistics
Matches: 124, Mismatches: 24, Indels: 16
0.76 0.15 0.10
Matches are distributed among these distances:
79 2 0.02
80 7 0.06
81 56 0.45
82 7 0.06
83 46 0.37
84 4 0.03
85 2 0.02
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTACAAACAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTC
AGTAATTTCACAAAGC
Found at i:58057397 original size:27 final size:27
Alignment explanation
Indices: 58057366--58057571 Score: 204
Period size: 27 Copynumber: 7.8 Consensus size: 27
58057356 GGTATTTTAG
* *
58057366 TAATTTTGTAAATCGAGGGTAAAATAA
1 TAATTCTGTAAATCGAGGGTAAAACAA
* * * * *
58057393 AAATTCTATAAATCAAGGGTAAAATAG
1 TAATTCTGTAAATCGAGGGTAAAACAA
* ***
58057420 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTCTGTAAATCGAGGGTAAAACAA
* *
58057447 TAATTCTGTAAATCAAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACAA
* * *
58057474 TAATTCTATAAGTCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACAA
* *
58057501 TAATTATGTAAATC-AGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACAA
* *
58057527 TAATTATGTAAATCG-GGGTAAAAC-G
1 TAATTCTGTAAATCGAGGGTAAAACAA
58057552 TAATTCTGTAAATCG-GGGTA
1 TAATTCTGTAAATCGAGGGTA
58057572 CTTTGGTAAT
Statistics
Matches: 157, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
25 20 0.13
26 33 0.21
27 104 0.66
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACAA
Found at i:58057423 original size:81 final size:81
Alignment explanation
Indices: 58057338--58057550 Score: 189
Period size: 81 Copynumber: 2.7 Consensus size: 81
58057328 GGGTATTTTG
* *** * * *
58057338 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAATAAAAATTCTATA
1 GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAAAAATTCTATA
58057403 AATCAAGGGTAAAATA
66 AATCAAGGGTAAAATA
* * * * * *
58057419 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCAAGGGTAAAACGATAATTCTATA
1 GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAAAAATTCTATA
* * *
58057484 AGTCGAGGGTAAAA-C
66 AATCAAGGGTAAAATA
* ** * * * *
58057499 GATAATTATGTAAATC-AGGGTAAAACAGTAATTATGTAAATC-GGGGTAAAAC
1 G-TAATTCTACAAACCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAAC
58057551 GTAATTCTGT
Statistics
Matches: 109, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
79 9 0.08
80 24 0.22
81 76 0.70
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.29
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAACAAAAATTCTATA
AATCAAGGGTAAAATA
Found at i:58057607 original size:27 final size:27
Alignment explanation
Indices: 58057577--58057666 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
58057567 GGGTACTTTG
*
58057577 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
58057604 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * * *
58057631 GTATTTTTA-AAAACTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
58057658 GTAATTTTA
1 GTAATTTTA
58057667 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
26 5 0.09
27 49 0.91
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:58057673 original size:28 final size:27
Alignment explanation
Indices: 58057595--58057675 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 27
58057585 ACAAGTCGAA
* *
58057595 GGTATTTCAGTAATTTTACAAA-TCGAG
1 GGTATTTCAGTAATTTTAAAAACT-AAG
*
58057622 GGTATTTCAGTATTTTTAAAAACTAAG
1 GGTATTTCAGTAATTTTAAAAACTAAG
* *
58057649 GGTATTTCGGTAATTTTAGTAAACTAA
1 GGTATTTCAGTAATTTTA-AAAACTAA
58057676 AGTATTCTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
27 38 0.83
28 8 0.17
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTAAAAACTAAG
Found at i:58060423 original size:30 final size:31
Alignment explanation
Indices: 58060383--58060445 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
58060373 CCTTTTCATA
58060383 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
58060414 TTTCA-ATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
58060444 TT
1 TT
58060446 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:58060741 original size:24 final size:23
Alignment explanation
Indices: 58060653--58060772 Score: 188
Period size: 23 Copynumber: 5.1 Consensus size: 23
58060643 CTAGAGGCCT
*
58060653 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTT-ATAACTGGGGCATA
58060678 AGCCCTTTTATAACTGGGGCATA
1 AGCCCTTTTATAACTGGGGCATA
58060701 AGCCC-TTTATAACTGGGGCATA
1 AGCCCTTTTATAACTGGGGCATA
58060723 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTT-ATAACTGGGGCATA
*
58060747 AGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTTATAACTGGGGCATA
58060770 AGC
1 AGC
58060773 TTTTGCACTT
Statistics
Matches: 91, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
22 22 0.24
23 38 0.42
24 27 0.30
25 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (23 bp):
AGCCCTTTTATAACTGGGGCATA
Found at i:58060848 original size:9 final size:9
Alignment explanation
Indices: 58060834--58060890 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
58060824 ATCTCATGTG
58060834 CATATCATA
1 CATATCATA
*
58060843 CATATCATGTG
1 CATATCA--TA
58060854 CATATCATA
1 CATATCATA
* *
58060863 CATGTCATGTG
1 CATATCA--TA
58060874 CATATCATA
1 CATATCATA
58060883 CATATCAT
1 CATATCAT
58060891 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:58060850 original size:20 final size:20
Alignment explanation
Indices: 58060822--58060892 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
58060812 GCATTTATGA
*
58060822 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
58060842 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
58060862 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
58060882 ACATATCATGT
1 ACATATCATGT
58060893 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:58060857 original size:11 final size:11
Alignment explanation
Indices: 58060827--58060881 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
58060817 TATGAACATC
58060827 TCATGTGCATA
1 TCATGTGCATA
*
58060838 TCA--TACATA
1 TCATGTGCATA
58060847 TCATGTGCATA
1 TCATGTGCATA
* *
58060858 TCA--TACATG
1 TCATGTGCATA
58060867 TCATGTGCATA
1 TCATGTGCATA
58060878 TCAT
1 TCAT
58060882 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:58060970 original size:24 final size:24
Alignment explanation
Indices: 58060929--58060975 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
58060919 ATATATAAAC
* * *
58060929 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
58060953 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
58060976 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:58062164 original size:27 final size:26
Alignment explanation
Indices: 58062129--58062206 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 26
58062119 GGGCATATTC
* *
58062129 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACC-TATAGGGGTATTACG
58062156 GTCACTTTACCCTATAGGGGCT-TTACG
1 GTCACTTTA-CCTATAGGGG-TATTACG
58062183 GTCACTTTACCTAATAGGGGTATT
1 GTCACTTTACCT-ATAGGGGTATT
58062207 TTAGTCATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
26 4 0.09
27 38 0.84
28 3 0.07
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.35
Consensus pattern (26 bp):
GTCACTTTACCTATAGGGGTATTACG
Found at i:58062277 original size:27 final size:27
Alignment explanation
Indices: 58062247--58062298 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
58062237 GTAAATCTAC
58062247 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
58062274 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
58062299 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:58062360 original size:27 final size:27
Alignment explanation
Indices: 58062334--58062462 Score: 143
Period size: 27 Copynumber: 4.8 Consensus size: 27
58062324 CTTTGTAAAT
* *
58062334 CAGGGGTATTTTTGAAATTTTACAAA-
1 CAGGGGTATTTTGGTAATTTTACAAAC
** * *
58062360 TTGAGGGTATTTCGGTAATTTAACAAAC
1 CAG-GGGTATTTTGGTAATTTTACAAAC
* *
58062388 CAAGAGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
58062415 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
* *
58062442 CAAGGGTATTTTAGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
58062463 GTAAATCGAG
Statistics
Matches: 83, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 82 0.99
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:58062397 original size:54 final size:54
Alignment explanation
Indices: 58062339--58062476 Score: 170
Period size: 54 Copynumber: 2.6 Consensus size: 54
58062329 TAAATCAGGG
* *
58062339 GTATTTTTGAAATTTTACAAATTGAGGGTATTTCGGTAATTTAACAAACCAAGA
1 GTATTTTAGTAATTTTACAAATTGAGGGTATTTCGGTAATTTAACAAACCAAGA
* * * * *
58062393 GTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAAGG
1 GTATTTTAGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTAACAAACCAAGA
** *
58062447 GTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GTATTTTAGTAATTTTACAAATTGAGGGTA
58062477 AAACAGTAAT
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
53 1 0.01
54 69 0.97
55 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (54 bp):
GTATTTTAGTAATTTTACAAATTGAGGGTATTTCGGTAATTTAACAAACCAAGA
Found at i:58062474 original size:27 final size:27
Alignment explanation
Indices: 58062255--58062530 Score: 135
Period size: 27 Copynumber: 10.1 Consensus size: 27
58062245 ACAAACCAAA
* * * *
58062255 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
58062282 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* * *
58062311 GGTATTTCT-GTAACTTTGTAAATCAGG
1 GGTATTT-TAGTAATTTTATAAATCAAG
* * * **
58062338 GGTATTTTTGAAATTTTACAAATTGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
** * * *
58062365 GGTATTTCGGTAATTTAACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * * *
58062392 AGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* * *
58062419 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* *
58062446 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
**** * *
58062473 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** * * *
58062500 GGTAAAATAATAATTCTATAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
58062527 GGTA
1 GGTA
58062531 AAACGGTAAT
Statistics
Matches: 198, Mismatches: 44, Indels: 14
0.77 0.17 0.05
Matches are distributed among these distances:
26 2 0.01
27 166 0.84
28 15 0.08
29 15 0.08
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:58062531 original size:27 final size:27
Alignment explanation
Indices: 58062454--58062692 Score: 268
Period size: 27 Copynumber: 8.9 Consensus size: 27
58062444 AGGGTATTTT
*
58062454 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
58062481 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
58062508 AATAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * * *
58062535 GGTAATTCTGCAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
58062562 GGTAATTTTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
58062589 -GATAATTATGTAAATC-AGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* *
58062616 GGTAATTATGTAAATC-AGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* *
58062643 AGTAATTCTGTAAATTGGGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
58062670 AGTAATTCTGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
58062693 CTTTGGTAAT
Statistics
Matches: 183, Mismatches: 25, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
26 2 0.01
27 180 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:58062711 original size:27 final size:27
Alignment explanation
Indices: 58062681--58062760 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
58062671 GTAATTCTGT
* *
58062681 AAATCGGGGGTACTTT-GGTAATTTTAC
1 AAATCGAGGGTA-TTTCAGTAATTTTAC
*
58062708 AAATCGAGGGTATTTCAGTATTTTTAC
1 AAATCGAGGGTATTTCAGTAATTTTAC
* *
58062735 AAA-CTAAGGGTATTTCGGTAATTTTA
1 AAATC-GAGGGTATTTCAGTAATTTTA
58062761 GTAAACTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.09
27 41 0.91
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (27 bp):
AAATCGAGGGTATTTCAGTAATTTTAC
Found at i:58062719 original size:81 final size:81
Alignment explanation
Indices: 58062455--58062719 Score: 291
Period size: 81 Copynumber: 3.3 Consensus size: 81
58062445 GGGTATTTTA
* * * * *
58062455 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAATAATTCTATA
1 GTAATTTTGCAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
*
58062520 AATCGAGGGTAAAACG
66 AATCGGGGGTAAAACG
* * ** * * *
58062536 GTAATTCTGCAAATCAAGGGTAAAATGGTAATTTTGTAAGTCGAGGGTAAAAC-GATAATTATGT
1 GTAATTTTGCAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGT
*
58062600 AAATCAGGGGTAAAACG
65 AAATCGGGGGTAAAACG
* * * *
58062617 GTAATTATGTAAATC-AGGGGTAAAACAGTAATTCTGTAAATTGGGGGTAAAACAGTAATTCTGT
1 GTAATTTTGCAAATCGA-GGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
****
58062681 AAATCGGGGGTACTTTG
65 AAATCGGGGGTAAAACG
*
58062698 GTAATTTTACAAATCGAGGGTA
1 GTAATTTTGCAAATCGAGGGTA
58062720 TTTCAGTATT
Statistics
Matches: 149, Mismatches: 31, Indels: 8
0.79 0.16 0.04
Matches are distributed among these distances:
80 1 0.01
81 146 0.98
82 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (81 bp):
GTAATTTTGCAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
AATCGGGGGTAAAACG
Found at i:58062767 original size:28 final size:27
Alignment explanation
Indices: 58062698--58062769 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 27
58062688 GGGTACTTTG
*
58062698 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGGGTATTTCA
* *
58062725 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGGGTATTTCA
*
58062752 GTAATTTTAGTAAACTAA
1 GTAATTTTA-CAAACTAA
58062770 AGTATTCTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
27 30 0.79
28 8 0.21
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGGGTATTTCA
Found at i:58064542 original size:31 final size:31
Alignment explanation
Indices: 58064501--58064564 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
58064491 CCTTTTCATA
*
58064501 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
58064532 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
58064563 TT
1 TT
58064565 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:58064808 original size:24 final size:24
Alignment explanation
Indices: 58064772--58064923 Score: 209
Period size: 24 Copynumber: 6.4 Consensus size: 24
58064762 CTGGAGGCCT
*
58064772 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
58064797 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
58064821 AGTCC-TTTCATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
58064844 AGCCCTTTTGACAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
58064868 AGCCCTTTTGATAACTGGGGCACA
1 AGCCCTTTTAATAACTGGGGCATA
*
58064892 AGCCC-TTTAATAACTGGAGCATA
1 AGCCCTTTTAATAACTGGGGCATA
58064915 AGCCCTTTT
1 AGCCCTTTT
58064924 GCACTTCCTC
Statistics
Matches: 114, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
23 41 0.36
24 69 0.61
25 4 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:58064860 original size:71 final size:71
Alignment explanation
Indices: 58064785--58064924 Score: 226
Period size: 71 Copynumber: 2.0 Consensus size: 71
58064775 CTCTTTTAAT
* * * *
58064785 AACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGTCCTTTCATAACTGGGGCATAAGCCCT
1 AACTGGGGCAAAAGCCCTTTTAATAACTGGGGCACAAGCCCTTTAATAACTGGAGCATAAGCCCT
58064850 TTTGAC
66 TTTGAC
* *
58064856 AACTGGGGCATAAGCCCTTTTGATAACTGGGGCACAAGCCCTTTAATAACTGGAGCATAAGCCCT
1 AACTGGGGCAAAAGCCCTTTTAATAACTGGGGCACAAGCCCTTTAATAACTGGAGCATAAGCCCT
58064921 TTTG
66 TTTG
58064925 CACTTCCTCC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (71 bp):
AACTGGGGCAAAAGCCCTTTTAATAACTGGGGCACAAGCCCTTTAATAACTGGAGCATAAGCCCT
TTTGAC
Found at i:58064924 original size:47 final size:48
Alignment explanation
Indices: 58064772--58064924 Score: 211
Period size: 47 Copynumber: 3.2 Consensus size: 48
58064762 CTGGAGGCCT
*
58064772 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
* * * * *
58064821 AGTCC-TTTCATAACTGGGGCATAAGCCCTTTTGACAACTGGGGCATA
1 AGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
* *
58064868 AGCCCTTTTGATAACTGGGGCACAAGCCC-TTTAATAACTGGAGCATA
1 AGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
58064915 AGCCCTTTTG
1 AGCCCTTTTG
58064925 CACTTCCTCC
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
47 67 0.73
48 22 0.24
49 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (48 bp):
AGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
Found at i:58064988 original size:11 final size:11
Alignment explanation
Indices: 58064969--58065028 Score: 56
Period size: 11 Copynumber: 5.8 Consensus size: 11
58064959 GCATTTATGA
*
58064969 ACATCTCATGT
1 ACATATCATGT
58064980 ACATATCA--T
1 ACATATCATGT
58064989 ACATATCATGT
1 ACATATCATGT
*
58065000 GCATATCA--T
1 ACATATCATGT
*
58065009 ACATGTCATGT
1 ACATATCATGT
*
58065020 GCATATCAT
1 ACATATCAT
58065029 AGATATCGTG
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 16 0.41
11 23 0.59
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (11 bp):
ACATATCATGT
Found at i:58064997 original size:20 final size:20
Alignment explanation
Indices: 58064969--58065035 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
58064959 GCATTTATGA
* *
58064969 ACATCTCATGTACATATCAT
1 ACATATCATGTGCATATCAT
58064989 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
58065009 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
58065029 AGATATC
1 ACATATC
58065036 GTGTTTATCA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:58065115 original size:25 final size:24
Alignment explanation
Indices: 58065076--58065123 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
58065066 ATATATAAAC
* *
58065076 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAATGGTCA-TTTTA
58065101 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
58065124 CAAGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
CCTAGGGGCAAAATGGTCATTTTA
Found at i:58066319 original size:27 final size:26
Alignment explanation
Indices: 58066284--58066361 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 26
58066274 GGGCATATTC
*
58066284 GTCATTTTACCATACAGGGGTATTACG
1 GTCACTTTACC-TACAGGGGTATTACG
58066311 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCACTTTA-CCTACAGGGG-TATTACG
*
58066338 GTCACTTTACCTAATAGGGGTATT
1 GTCACTTTACCT-ACAGGGGTATT
58066362 TTAGTCATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
26 4 0.09
27 38 0.84
28 3 0.07
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (26 bp):
GTCACTTTACCTACAGGGGTATTACG
Found at i:58066617 original size:27 final size:27
Alignment explanation
Indices: 58066379--58066617 Score: 160
Period size: 27 Copynumber: 8.8 Consensus size: 27
58066369 TTTCATCTTA
* * *
58066379 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** **
58066406 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
58066433 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-C
* * ** *
58066462 CAATGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAC
* * *
58066489 C-AGGGCTATTTTAGTAATTTCACAAAT
1 CAAGGG-TATTTTGGTAATTTTACAAAC
** * *
58066516 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
58066543 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
58066570 TAGGGGTATTTTGGTAATTTTACAAGC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
58066597 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
58066618 GTAAATCGAG
Statistics
Matches: 169, Mismatches: 37, Indels: 12
0.78 0.17 0.06
Matches are distributed among these distances:
26 4 0.02
27 132 0.78
28 17 0.10
29 16 0.09
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:58066617 original size:54 final size:54
Alignment explanation
Indices: 58066490--58066631 Score: 178
Period size: 54 Copynumber: 2.6 Consensus size: 54
58066480 TTTGTAAATC
* *
58066490 AGGGCTATTTTAGTAATTTCACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 AGGG-TATTTTAGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCA
* * * *
58066545 AGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAGCCA
1 AGGGTATTTTAGTAATTTTACAAA-TAGAGGGTATTTCGGTAATTTCACAAACCA
** *
58066599 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AGGGTATTTTAGTAATTTTACAAATAGAGGGTA
58066632 AAACAGTAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
53 2 0.03
54 67 0.89
55 6 0.08
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAATAGAGGGTATTTCGGTAATTTCACAAACCA
Found at i:58066629 original size:27 final size:27
Alignment explanation
Indices: 58066410--58066712 Score: 137
Period size: 27 Copynumber: 11.1 Consensus size: 27
58066400 ACAAACCAAA
* * * *
58066410 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
* *
58066437 GGTATTTCTA-TAATTTTTAGAAAGTCAAT
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* *
58066466 GGTATTTCT-GTAACTTTGTAAATC-AG
1 GGTATTT-TAGTAATTTTATAAATCAAG
* * **
58066492 GGCTATTTTAGTAATTTCACAAATTGAG
1 GG-TATTTTAGTAATTTTATAAATCAAG
** * * *
58066520 GGTATTTCGGTAATTTCACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * *
58066547 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* * **
58066574 GGTATTTTGGTAATTTTACAAGCCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* *
58066601 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
**** * *
58066628 GGTAAAACAGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** * *
58066655 GGTAAAATAGTAATTCTATAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
**** * *
58066682 GGTAAAACAGTAATTCTATAAGTCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
58066709 GGTA
1 GGTA
58066713 AAACGGTAAT
Statistics
Matches: 226, Mismatches: 41, Indels: 18
0.79 0.14 0.06
Matches are distributed among these distances:
26 5 0.02
27 186 0.82
28 19 0.08
29 16 0.07
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:58066641 original size:54 final size:53
Alignment explanation
Indices: 58066583--58066797 Score: 211
Period size: 54 Copynumber: 4.0 Consensus size: 53
58066573 GGGTATTTTG
* ***
58066583 GTAATTTTACAAGCCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTA-AAGTCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACA
* *
58066637 GTAATTCTGTAAA-TCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
1 GTAATT-T-TAAAGTCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACA
* ** *
58066691 GTAATTCTATAAGTCAAGGGTAAAACGGTAATTTTGTAAGTCGAGGGTAAAAC-
1 GTAATTTTA-AAGTCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACA
* * * * *
58066744 GATAATTATGTAAA-TTAGGGGTAAAATGGTAATTATGTAAATCGGGGGTAAAAC
1 G-TAATT-T-TAAAGTCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAAC
58066798 GATAATTCTG
Statistics
Matches: 135, Mismatches: 19, Indels: 14
0.80 0.11 0.08
Matches are distributed among these distances:
52 2 0.01
53 3 0.02
54 121 0.90
55 5 0.04
56 4 0.03
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (53 bp):
GTAATTTTAAAGTCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACA
Found at i:58066684 original size:81 final size:80
Alignment explanation
Indices: 58066609--58066874 Score: 212
Period size: 81 Copynumber: 3.3 Consensus size: 80
58066599 AGGGTATTTT
* * *
58066609 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTAT
1 AGTAATTTTATAAATCGAGGGTAAAAC-GTAATTCTGTAAATCGAGGGTAAAATAGTAATTATAT
58066674 AAATCGAGGGTAAAAC
65 AAATCGAGGGTAAAAC
* * * * * * *
58066690 AGTAATTCTATAAGTCAAGGGTAAAACGGTAATTTTGTAAGTCGAGGGTAAAA-CGATAATTATG
1 AGTAATTTTATAAATCGAGGGTAAAAC-GTAATTCTGTAAATCGAGGGTAAAATAG-TAATTATA
* *
58066754 TAAAT-TAGGGGTAAAAT
64 TAAATCGA-GGGTAAAAC
* * * * * *** * * *
58066771 GGTAATTATGTAAATCGGGGGTAAAACGATAATTCTGTAAATCGGGGGTACTTTGGTAATTTTAC
1 AGTAATTTTATAAATCGAGGGTAAAACG-TAATTCTGTAAATCGAGGGTAAAATAGTAATTATAT
* * ***
58066836 AAGTCGAAGGTATTTC
65 AAATCGAGGGTAAAAC
*
58066852 AGTAATTTTACAAATCGAGGGTA
1 AGTAATTTTATAAATCGAGGGTA
58066875 TTTCAGTATA
Statistics
Matches: 139, Mismatches: 41, Indels: 10
0.73 0.22 0.05
Matches are distributed among these distances:
80 3 0.02
81 134 0.96
82 2 0.01
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.30
Consensus pattern (80 bp):
AGTAATTTTATAAATCGAGGGTAAAACGTAATTCTGTAAATCGAGGGTAAAATAGTAATTATATA
AATCGAGGGTAAAAC
Found at i:58066814 original size:27 final size:27
Alignment explanation
Indices: 58066611--58066820 Score: 203
Period size: 27 Copynumber: 7.8 Consensus size: 27
58066601 GGTATTTTAG
*
58066611 TAATTTTGTAAATCGAGGGTAAAAC-A
1 TAATTCTGTAAATCGAGGGTAAAACGA
* *
58066637 GTAATTCTGTAAATCAAGGGTAAAA-TA
1 -TAATTCTGTAAATCGAGGGTAAAACGA
*
58066664 GTAATTCTATAAATCGAGGGTAAAAC-A
1 -TAATTCTGTAAATCGAGGGTAAAACGA
* * * *
58066691 GTAATTCTATAAGTCAAGGGTAAAACGG
1 -TAATTCTGTAAATCGAGGGTAAAACGA
* *
58066719 TAATTTTGTAAGTCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
* * * *
58066746 TAATTATGTAAAT-TAGGGGTAAAATGG
1 TAATTCTGTAAATCGA-GGGTAAAACGA
* *
58066773 TAATTATGTAAATCGGGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGA
*
58066800 TAATTCTGTAAATCGGGGGTA
1 TAATTCTGTAAATCGAGGGTA
58066821 CTTTGGTAAT
Statistics
Matches: 157, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.01
27 156 0.99
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGA
Found at i:58066829 original size:108 final size:108
Alignment explanation
Indices: 58066597--58066847 Score: 281
Period size: 108 Copynumber: 2.3 Consensus size: 108
58066587 TTTTACAAGC
* * * *
58066597 CAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAA
1 CAAGGGTAATTTGGTAATTTTGTAAGTCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAA
* *
58066662 TAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAGT
66 TAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTATAAAT
*** * *
58066705 CAAGGGTAAAACGGTAATTTTGTAAGTCGAGGGTAAAAC-GATAATTATGTAAATTAGGGGTAAA
1 CAAGGGTAATTTGGTAATTTTGTAAGTCGAGGGTAAAACAG-TAATTATGTAAATCAAGGGTAAA
* * * *
58066769 ATGGTAATTATGTAAATCGGGGGTAAAAC-GATAATTCTGTAAAT
65 ATAGTAATTATATAAATCGAGGGTAAAACAG-TAATTCTATAAAT
** * ** *
58066813 CGGGGGTACTTTGGTAATTTTACAAGTCGAAGGTA
1 CAAGGGTAATTTGGTAATTTTGTAAGTCGAGGGTA
58066848 TTTCAGTAAT
Statistics
Matches: 117, Mismatches: 24, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
107 2 0.02
108 115 0.98
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (108 bp):
CAAGGGTAATTTGGTAATTTTGTAAGTCGAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAA
TAGTAATTATATAAATCGAGGGTAAAACAGTAATTCTATAAAT
Found at i:58066831 original size:54 final size:54
Alignment explanation
Indices: 58066610--58066813 Score: 268
Period size: 54 Copynumber: 3.8 Consensus size: 54
58066600 GGGTATTTTA
*
58066610 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATG
* * * * *
58066664 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAGTCAAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATG
* * * *
58066718 GTAATTTTGTAAGTCGAGGGTAAAAC-GATAATTATGTAAATTAGGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCAAGGGTAAAATG
* *
58066772 GTAATTATGTAAATCGGGGGTAAAAC-GATAATTCTGTAAATC
1 GTAATTTTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATC
58066814 GGGGGTACTT
Statistics
Matches: 129, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
53 1 0.01
54 128 0.99
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATG
Found at i:58066847 original size:27 final size:27
Alignment explanation
Indices: 58066826--58066915 Score: 112
Period size: 27 Copynumber: 3.3 Consensus size: 27
58066816 GGGTACTTTG
*
58066826 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
58066853 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
58066880 GT-ATATTTACAAA-CTAAGGGTATTTCG
1 GTAAT-TTTACAAATCGAA-GGTATTTCA
58066907 GTAATTTTA
1 GTAATTTTA
58066916 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
26 4 0.07
27 49 0.89
28 2 0.04
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:58068834 original size:45 final size:46
Alignment explanation
Indices: 58068785--58068871 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 46
58068775 CTATTTTGAC
* * *
58068785 AAAACCATATTTATTTCCAAATG-ATTTCATTTCTCTATTTCGGAG
1 AAAACCATAATCACTTCCAAATGCATTTCATTTCTCTATTTCGGAG
** *
58068830 AAAACCATAATCACTTCTGAATGCTTTTCATTTCTCTATTTC
1 AAAACCATAATCACTTCCAAATGCATTTCATTTCTCTATTTC
58068872 TATTCATTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
45 18 0.51
46 17 0.49
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.43
Consensus pattern (46 bp):
AAAACCATAATCACTTCCAAATGCATTTCATTTCTCTATTTCGGAG
Found at i:58069737 original size:26 final size:26
Alignment explanation
Indices: 58069701--58069752 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
58069691 CTAAATTATG
58069701 CTAATATCTCCTTCAAGAGTAAGAGA
1 CTAATATCTCCTTCAAGAGTAAGAGA
*
58069727 CTAATATCTCCTTCGAGAGTAAGAGA
1 CTAATATCTCCTTCAAGAGTAAGAGA
58069753 AACTAACTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (26 bp):
CTAATATCTCCTTCAAGAGTAAGAGA
Found at i:58080080 original size:26 final size:27
Alignment explanation
Indices: 58080037--58080101 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
58080027 TGGATAAGTT
*
58080037 GTAGAATTACTAAAATACCC-TGTAGG
1 GTAGAATTACCAAAATACCCTTGTAGG
* * *
58080063 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCAAAATACCCTTGTAGG
*
58080090 GTAAAATTACCA
1 GTAGAATTACCA
58080102 TTTTGCCCCT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 17 0.53
27 15 0.47
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCAAAATACCCTTGTAGG
Found at i:58080884 original size:27 final size:26
Alignment explanation
Indices: 58080832--58080891 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
58080822 ATATATATAT
*
58080832 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
58080858 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
58080885 ATATCTG
1 ATATCTG
58080892 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:58111962 original size:40 final size:39
Alignment explanation
Indices: 58111907--58112040 Score: 128
Period size: 40 Copynumber: 3.4 Consensus size: 39
58111897 CCAGTTTGGT
* *
58111907 ACCCATTACCTCATCGGATAATTCGAAGTAAAAAGTTGAC
1 ACCCAGTACCTCATCGGATAATCCGAAGTAAAAA-TTGAC
* * * *
58111947 ACCCAGTATCTCATCGGCTAAACCGAAGT--AAATTGGC
1 ACCCAGTACCTCATCGGATAATCCGAAGTAAAAATTGAC
* * *
58111984 ACCCAGTGCCTTATCGAATTAATCCGAAGTAATAAATTGAC
1 ACCCAGTACCTCATCGGA-TAATCCGAAGTAA-AAATTGAC
**
58112025 ACCCAGTGTCTCATCG
1 ACCCAGTACCTCATCG
58112041 ACTTGAAGTC
Statistics
Matches: 75, Mismatches: 15, Indels: 7
0.77 0.15 0.07
Matches are distributed among these distances:
37 17 0.23
38 13 0.17
40 24 0.32
41 21 0.28
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (39 bp):
ACCCAGTACCTCATCGGATAATCCGAAGTAAAAATTGAC
Found at i:58112028 original size:41 final size:42
Alignment explanation
Indices: 58111975--58112058 Score: 109
Period size: 41 Copynumber: 2.0 Consensus size: 42
58111965 TAAACCGAAG
* *
58111975 TAAATTGGCACCCAGTGCCTTATCGAATT-AA-TCCGAAGTAA
1 TAAATTGACACCCAGTGCCTCATCGAATTGAAGT-CGAAGTAA
* *
58112016 TAAATTGACACCCAGTGTCTCATCGACTTGAAGTCGAAGTAA
1 TAAATTGACACCCAGTGCCTCATCGAATTGAAGTCGAAGTAA
58112058 T
1 T
58112059 CCCTAAACTC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
41 25 0.68
42 11 0.30
43 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (42 bp):
TAAATTGACACCCAGTGCCTCATCGAATTGAAGTCGAAGTAA
Found at i:58114282 original size:50 final size:49
Alignment explanation
Indices: 58114115--58114339 Score: 279
Period size: 49 Copynumber: 4.5 Consensus size: 49
58114105 CTGGTACGCA
* * *
58114115 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACACG
* *
58114164 TAGTAGCCTGCACTTAGTACTATACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACACG
** *
58114213 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGATACACG
* * * * * * *
58114263 TAGTAGCCTACACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGATACACG
*
58114314 TAGTAGCCTGTACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
58114340 TGCGACCTCA
Statistics
Matches: 152, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 76 0.50
50 42 0.28
51 33 0.22
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACACG
Found at i:58114290 original size:99 final size:100
Alignment explanation
Indices: 58114102--58114346 Score: 314
Period size: 99 Copynumber: 2.5 Consensus size: 100
58114092 TAGCCAAAGC
* * * * **
58114102 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGATACACGTAG
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
* *
58114167 TAGCCTGCACTTAGTACTATACACGTGA-C-CAAT
66 TAGCCTACACTTAGTACTACACACGTGATCACAAT
* * *
58114200 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTA
*
58114265 GTAGCCTACACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTACACTTAGTACTACACACGTGATCACAAT
* * * * *
58114301 TTTCGGGTACGCATAGTAGCCTGTACTTAGTACTACACATGCGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
58114347 TCACATAGAT
Statistics
Matches: 125, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 40 0.32
99 42 0.34
100 1 0.01
101 42 0.34
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (100 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAG
TAGCCTACACTTAGTACTACACACGTGATCACAAT
Found at i:58116052 original size:30 final size:30
Alignment explanation
Indices: 58116018--58116077 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
58116008 CAAGAAAATC
*
58116018 GAATAAAGAAATCCAAGA-TAGAGAAACCCA
1 GAATAAAG-AATCCAAGAGTAAAGAAACCCA
*
58116048 GAATAAAGAATCCTAGAGTAAAGAAACCCA
1 GAATAAAGAATCCAAGAGTAAAGAAACCCA
58116078 AGATACGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.55, C:0.17, G:0.17, T:0.12
Consensus pattern (30 bp):
GAATAAAGAATCCAAGAGTAAAGAAACCCA
Found at i:58116057 original size:15 final size:15
Alignment explanation
Indices: 58116018--58116077 Score: 59
Period size: 15 Copynumber: 4.0 Consensus size: 15
58116008 CAAGAAAATC
*
58116018 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
*
58116033 -AGATAGAGAAACCCA
1 GA-ATAAAGAAACCCA
* *
58116048 GAATAAAGAATCCTA
1 GAATAAAGAAACCCA
*
58116063 GAGTAAAGAAACCCA
1 GAATAAAGAAACCCA
58116078 AGATACGATA
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
14 1 0.03
15 33 0.94
16 1 0.03
ACGTcount: A:0.55, C:0.17, G:0.17, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAACCCA
Found at i:58119107 original size:49 final size:49
Alignment explanation
Indices: 58119054--58119278 Score: 288
Period size: 49 Copynumber: 4.5 Consensus size: 49
58119044 CTGGTACGCA
* * * *
58119054 TAGTAGCCTACACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* *
58119103 TAGTAGCCTACACTTAGTAATACACACGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
58119152 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
58119202 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
58119253 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
58119279 TGCGACCTCA
Statistics
Matches: 155, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 76 0.49
50 43 0.28
51 35 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:58119286 original size:101 final size:99
Alignment explanation
Indices: 58119041--58119286 Score: 323
Period size: 101 Copynumber: 2.5 Consensus size: 99
58119031 TAGCCAAAGC
* * * ** *
58119041 TATCTGGTACGCATAGTAGCCTACACATAGTACTACACATGCGACC-AATTATCCGGTACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACGTA
58119105 GTAGCCTACACTTAGTAATACACACGTGACCAAT
66 GTAGCCTACACTTAGTAATACACACGTGACCAAT
* * * * *
58119139 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACGTA
* * *
58119204 GTAGCCTGCACTTAGTACTACACACGTGATCACAGT
66 GTAGCCTACACTTAGTAATACACACGTGA-C-CAAT
* *
58119240 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
58119287 CACAATAGAT
Statistics
Matches: 125, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
98 39 0.31
99 41 0.33
100 1 0.01
101 44 0.35
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACGTA
GTAGCCTACACTTAGTAATACACACGTGACCAAT
Found at i:58123267 original size:40 final size:40
Alignment explanation
Indices: 58123184--58123446 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
58123174 TTGAATGCTG
* * * * * *
58123184 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
58123224 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
58123264 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
58123304 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
58123344 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
58123384 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
58123423 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
58123447 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:58123466 original size:79 final size:80
Alignment explanation
Indices: 58123223--58123481 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
58123213 AAGTGAATAT
* * * * * * *
58123223 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
58123287 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
58123303 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
58123368 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
58123383 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
58123447 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
58123462 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
58123482 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:58130807 original size:40 final size:40
Alignment explanation
Indices: 58130724--58130986 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
58130714 TTGAATGCTG
* * * * * *
58130724 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
58130764 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
58130804 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
58130844 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
58130884 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
58130924 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
58130963 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
58130987 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:58131006 original size:79 final size:80
Alignment explanation
Indices: 58130763--58131021 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
58130753 AAGTGAATAT
* * * * * * *
58130763 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
58130827 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
58130843 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
58130908 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
58130923 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
58130987 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
58131002 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
58131022 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:58140367 original size:24 final size:24
Alignment explanation
Indices: 58140339--58140399 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
58140329 AACCGTATTT
* * *
58140339 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTAAAC-C
*
58140363 GCACACATAGTACCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
58140387 GCACACATAGTGC
1 GCACACATAGTGC
58140400 ATTGGATTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 26 0.84
25 5 0.16
ACGTcount: A:0.36, C:0.30, G:0.15, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:58160873 original size:33 final size:34
Alignment explanation
Indices: 58160836--58160904 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 34
58160826 CTTTCAATCA
*
58160836 TTGAAACCCTAATTTCTTCTTTCTTTCT-TTTTT
1 TTGAAACCCTAACTTCTTCTTTCTTTCTCTTTTT
58160869 TTGAAACCCTAACTTCTTCTTTCTTTCTCTTTTT
1 TTGAAACCCTAACTTCTTCTTTCTTTCTCTTTTT
58160903 TT
1 TT
58160905 TCTTTTTCTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 27 0.79
34 7 0.21
ACGTcount: A:0.14, C:0.23, G:0.03, T:0.59
Consensus pattern (34 bp):
TTGAAACCCTAACTTCTTCTTTCTTTCTCTTTTT
Found at i:58160908 original size:15 final size:16
Alignment explanation
Indices: 58160888--58160923 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
58160878 TAACTTCTTC
58160888 TTTCTTTCTCT-TTTT
1 TTTCTTTCTCTATTTT
*
58160903 TTTCTTTTTCTATTTT
1 TTTCTTTCTCTATTTT
58160919 TTTCT
1 TTTCT
58160924 ACTTAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTCTTTCTCTATTTT
Found at i:58165010 original size:43 final size:42
Alignment explanation
Indices: 58164963--58165059 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 42
58164953 CTAGACGTAT
* * *
58164963 TCTTACATGTAATCAAATATTGATG-CCACTGTCCTAGACAGGG
1 TCTTACATGTAATCAAATA-CGATGACCA-TGTCCCAGACAGAG
* * * *
58165006 TCTTACACGAAATCAAATACGATGACGATGTCCCAGACATAG
1 TCTTACATGTAATCAAATACGATGACCATGTCCCAGACAGAG
58165048 TCTTACATGTAA
1 TCTTACATGTAA
58165060 ATCATAAGTC
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 25 0.57
43 19 0.43
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (42 bp):
TCTTACATGTAATCAAATACGATGACCATGTCCCAGACAGAG
Found at i:58165062 original size:43 final size:44
Alignment explanation
Indices: 58164963--58165063 Score: 111
Period size: 43 Copynumber: 2.4 Consensus size: 44
58164953 CTAGACGTAT
* * *
58164963 TCTTACATGT-AATCAAATATTGATGCCACTGTCCTAGACAGGG
1 TCTTACATGTAAATCAAATATCGATGCCACTGTCCCAGACAGAG
* * *
58165006 TCTTACACG-AAATCAAATA-CGATGACGA-TGTCCCAGACATAG
1 TCTTACATGTAAATCAAATATCGATG-CCACTGTCCCAGACAGAG
58165048 TCTTACATGTAAATCA
1 TCTTACATGTAAATCA
58165064 TAAGTCAGTG
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
42 23 0.48
43 25 0.52
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.28
Consensus pattern (44 bp):
TCTTACATGTAAATCAAATATCGATGCCACTGTCCCAGACAGAG
Found at i:58174089 original size:13 final size:13
Alignment explanation
Indices: 58174071--58174095 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58174061 TATATTATAT
58174071 GTGTGAAAATTTC
1 GTGTGAAAATTTC
58174084 GTGTGAAAATTT
1 GTGTGAAAATTT
58174096 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:58175427 original size:112 final size:111
Alignment explanation
Indices: 58175230--58175445 Score: 299
Period size: 112 Copynumber: 1.9 Consensus size: 111
58175220 GGCATCAATA
* * * *
58175230 TATGTGTGTGAGTAAGACCACGTTTAATACGTTGGCATTGATAAGTGTTTCTGATATATTTGTGT
1 TATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATAAGTGATTCT-ATATATATGTGT
* **
58175295 AAGTAAGACCAAGTTTAATACGTTGGTATCGATATGTGAACTTGATT
65 AAGTAAGACCAAGTTTAATACATTGACATCGATATGTGAACTTGATT
** *
58175342 TATGTGTGCGAGTAAGACCATTTTTAATACGTTGGCATCGATATGTGATTCT-TATATATGTGTA
1 TATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATAAGTGATTCTATATATATGTGTA
*
58175406 CGAGTAAGACCACGTTTAATACATTGACATCGATATGTGA
66 --AGTAAGACCAAGTTTAATACATTGACATCGATATGTGA
58175446 TTACATGTAA
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
110 11 0.12
112 80 0.88
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (111 bp):
TATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATAAGTGATTCTATATATATGTGTA
AGTAAGACCAAGTTTAATACATTGACATCGATATGTGAACTTGATT
Found at i:58175445 original size:56 final size:56
Alignment explanation
Indices: 58175227--58175447 Score: 259
Period size: 56 Copynumber: 3.9 Consensus size: 56
58175217 CATGGCATCA
** * * *
58175227 ATATATGTGTGTGAGTAAGACCACGTTTAATACGTTGGCATTGATAAGTGTTTCTGAT
1 ATATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCT--T
* * * *
58175285 ATATTTGTGTA--AGTAAGACCAAGTTTAATACGTTGGTATCGATATGTGA-ACTT
1 ATATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTT
* * **
58175338 GATTTATGTGTGCGAGTAAGACCATTTTTAATACGTTGGCATCGATATGTGATTCTT
1 -ATATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTT
* *
58175395 ATATATGTGTACGAGTAAGACCACGTTTAATACATTGACATCGATATGTGATT
1 ATATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
58175448 ACATGTAAGA
Statistics
Matches: 138, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
53 1 0.01
54 8 0.06
55 2 0.01
56 115 0.83
57 3 0.02
58 9 0.07
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (56 bp):
ATATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTT
Found at i:58178197 original size:45 final size:45
Alignment explanation
Indices: 58178146--58178232 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
58178136 CAAAACATGT
* *
58178146 GTCACATACATCATGAACTTAGACCGCAACTCAATGAGTTCAAAC
1 GTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAAAC
**
58178191 GTCACATATGTCATGAACTCAGACCACAACTCAATGAGTTCA
1 GTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCA
58178233 GATCACATAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (45 bp):
GTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAAAC
Found at i:58180772 original size:42 final size:41
Alignment explanation
Indices: 58180726--58180842 Score: 92
Period size: 43 Copynumber: 2.8 Consensus size: 41
58180716 TTAGGGTTAC
58180726 TGAGATTACGTTTAAGACCATATCTGGGATATGACATCGATA
1 TGAGATTAC-TTTAAGACCATATCTGGGATATGACATCGATA
* * * * **
58180768 TGAGACTT-CTTGTAAAACCATAGCTAGGCTATTGGGATCGATA
1 TGAGA-TTACTT-TAAGACCATATCTGGGATA-TGACATCGATA
** * *
58180811 CAAGATTACATGTAAGACCATATTTGGGATAT
1 TGAGATTAC-TTTAAGACCATATCTGGGATAT
58180843 TGCATTGATA
Statistics
Matches: 56, Mismatches: 14, Indels: 10
0.70 0.17 0.12
Matches are distributed among these distances:
41 2 0.04
42 24 0.43
43 29 0.52
44 1 0.02
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (41 bp):
TGAGATTACTTTAAGACCATATCTGGGATATGACATCGATA
Found at i:58183407 original size:22 final size:22
Alignment explanation
Indices: 58183381--58183456 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
58183371 TTCCACGTTC
58183381 ATCACATTGGCCATTCTACCTT
1 ATCACATTGGCCATTCTACCTT
* *
58183403 ATCACATATATG-CATGT-TCACATT
1 ATCACAT-T-GGCCAT-TCT-ACCTT
*
58183427 CATCACATTGGCCATTCGACCTT
1 -ATCACATTGGCCATTCTACCTT
58183450 ATCACAT
1 ATCACAT
58183457 ATTTGCATGT
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 14 0.33
23 11 0.26
24 10 0.24
25 7 0.17
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTACCTT
Found at i:58183409 original size:47 final size:47
Alignment explanation
Indices: 58183378--58183624 Score: 431
Period size: 47 Copynumber: 5.3 Consensus size: 47
58183368 CACTTCCACG
**
58183378 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
58183425 TTCATCACATTGGCCATTCGACCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
58183472 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
58183519 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
58183566 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
58183613 TTCATCACATTG
1 TTCATCACATTG
58183625 AATCCTAAAT
Statistics
Matches: 195, Mismatches: 5, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
47 195 1.00
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.36
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:58183503 original size:22 final size:22
Alignment explanation
Indices: 58183475--58183596 Score: 72
Period size: 22 Copynumber: 5.3 Consensus size: 22
58183465 GTTCACATTC
58183475 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
58183497 ATCACATATTTG-CATGTTC-ACATT
1 ATCAC--ATTGGCCA--TTCGGCCTT
58183521 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
58183544 ATCACATATTTG-CATGTTC-ACATT
1 ATCAC--ATTGGCCA--TTCGGCCTT
58183568 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
58183591 ATCACA
1 ATCACA
58183597 CATATGCATG
Statistics
Matches: 74, Mismatches: 12, Indels: 28
0.65 0.11 0.25
Matches are distributed among these distances:
22 22 0.30
23 18 0.24
24 18 0.24
25 16 0.22
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:58187903 original size:13 final size:13
Alignment explanation
Indices: 58187885--58187909 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58187875 TAATGGTATA
58187885 TTGAATCCATGAT
1 TTGAATCCATGAT
58187898 TTGAATCCATGA
1 TTGAATCCATGA
58187910 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Done.