Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 181 of 325
Found at i:58825684 original size:29 final size:28
Alignment explanation
Indices: 58825648--58825725 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
58825638 TCATGAGATT
58825648 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
58825678 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
58825705 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
58825726 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:58826001 original size:173 final size:174
Alignment explanation
Indices: 58825678--58826004 Score: 557
Period size: 173 Copynumber: 1.9 Consensus size: 174
58825668 AAATTGTACA
* *
58825678 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
58825743 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCAAGTCAA
*
58825808 TTTTGGACAGCGGGAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
58825852 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
58825917 TGTGC-AACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCAAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCAAGTCAA
58825981 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
58826005 ACCTTGAGTT
Statistics
Matches: 143, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
173 79 0.55
174 64 0.45
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCAAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:58840894 original size:25 final size:25
Alignment explanation
Indices: 58840866--58840931 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
58840856 ATACATGTAT
* *
58840866 GCTCATACGAGCTATGAATTGGTAA
1 GCTCATATGAGCTATGAATAGGTAA
**
58840891 GCTCATATGAGCTACAAATAGGTAA
1 GCTCATATGAGCTATGAATAGGTAA
58840916 GCTCATATGAGCTATG
1 GCTCATATGAGCTATG
58840932 GTGTTCTGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (25 bp):
GCTCATATGAGCTATGAATAGGTAA
Found at i:58844207 original size:13 final size:13
Alignment explanation
Indices: 58844189--58844214 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58844179 TATAGGGCAT
58844189 ACATGGCCATGTC
1 ACATGGCCATGTC
58844202 ACATGGCCATGTC
1 ACATGGCCATGTC
58844215 TCACACACGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.23, T:0.23
Consensus pattern (13 bp):
ACATGGCCATGTC
Found at i:58847204 original size:47 final size:47
Alignment explanation
Indices: 58847151--58847735 Score: 972
Period size: 47 Copynumber: 12.4 Consensus size: 47
58847141 CAGCCAAGAC
*
58847151 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
58847198 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
58847245 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
58847292 AGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
58847339 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
58847386 AGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
58847435 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
58847482 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
58847529 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTAATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
58847576 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
58847623 AGTGTATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
58847670 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
58847717 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
58847736 TTCTGAAGGG
Statistics
Matches: 508, Mismatches: 28, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 462 0.91
49 46 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:58847923 original size:37 final size:37
Alignment explanation
Indices: 58847854--58847929 Score: 100
Period size: 37 Copynumber: 2.1 Consensus size: 37
58847844 CCGAGCTCTA
* * *
58847854 AAGACCCGATGACTACGTGTGGGAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTATGGGAATTATGTCCGGGT
*
58847891 AAGACCCGATAACTTCGTAT-GGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTATGGGA-ATTATGTCCGGGT
58847928 AA
1 AA
58847930 AACTTCATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 3 0.09
37 31 0.91
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTATGGGAATTATGTCCGGGT
Found at i:58856930 original size:46 final size:46
Alignment explanation
Indices: 58856880--58857055 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
58856870 TGATTGAGCA
58856880 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58856926 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
58856971 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58857019 -CCTGAGCGCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58857056 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:58857036 original size:93 final size:93
Alignment explanation
Indices: 58856877--58857048 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
58856867 GGATGATTGA
* *
58856877 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACGCGTTGAGT
58856942 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
58856970 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCGCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACGCGTTGAG
58857034 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
58857049 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACGCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58864499 original size:46 final size:46
Alignment explanation
Indices: 58864449--58864624 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
58864439 TGATTGAGCA
58864449 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58864495 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
58864540 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
58864588 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58864625 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:58864605 original size:93 final size:93
Alignment explanation
Indices: 58864446--58864617 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
58864436 GGATGATTGA
*
58864446 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
58864511 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
58864539 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
58864603 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
58864618 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58871488 original size:43 final size:43
Alignment explanation
Indices: 58871440--58871527 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
58871430 ATTTTGATTA
58871440 TGAGTTGAGGATTTTTGCTTGAGGACAAGCAAATGCTTAAGTG
1 TGAGTTGAGGATTTTTGCTTGAGGACAAGCAAATGCTTAAGTG
58871483 TGAGTTGAGGATTTTTGCTTGAGGACAAGCAAATGCTTAAGTG
1 TGAGTTGAGGATTTTTGCTTGAGGACAAGCAAATGCTTAAGTG
58871526 TG
1 TG
58871528 GGGGTATTTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.27, C:0.09, G:0.31, T:0.33
Consensus pattern (43 bp):
TGAGTTGAGGATTTTTGCTTGAGGACAAGCAAATGCTTAAGTG
Found at i:58872639 original size:14 final size:14
Alignment explanation
Indices: 58872620--58872651 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
58872610 TTGTCTTAAT
58872620 CAAAAGAATTTTCC
1 CAAAAGAATTTTCC
*
58872634 CAAAAGTATTTTCC
1 CAAAAGAATTTTCC
58872648 CAAA
1 CAAA
58872652 TTTTCTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.22, G:0.06, T:0.28
Consensus pattern (14 bp):
CAAAAGAATTTTCC
Found at i:58875999 original size:25 final size:25
Alignment explanation
Indices: 58875970--58876017 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
58875960 TTACAACATG
* * *
58875970 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
58875995 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
58876018 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:58876101 original size:11 final size:11
Alignment explanation
Indices: 58876065--58876120 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
58876055 CATGGTATGT
58876065 ATGATATGCAC
1 ATGATATGCAC
* *
58876076 ATGACATG--T
1 ATGATATGCAC
58876085 ATGATATGCAC
1 ATGATATGCAC
*
58876096 ATGATATG--T
1 ATGATATGCAC
58876105 ATGATATGCAC
1 ATGATATGCAC
58876116 ATGAT
1 ATGAT
58876121 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:58876120 original size:20 final size:20
Alignment explanation
Indices: 58876054--58876120 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
58876044 ATTTTGATAA
*
58876054 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
58876074 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
58876094 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
58876114 ACATGAT
1 ACATGAT
58876121 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:58876196 original size:24 final size:24
Alignment explanation
Indices: 58876170--58876337 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
58876160 GAGGAAGTGC
*
58876170 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
58876194 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATT
*
58876218 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
**
58876242 AAAAGACCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
58876266 AAAAGGCCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
58876290 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
58876314 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
58876338 ATGATAAAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
24 118 0.91
25 11 0.09
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:58879849 original size:22 final size:22
Alignment explanation
Indices: 58879815--58879858 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
58879805 CTAATTTGTG
* *
58879815 AAAATTTACTATAAAAATAATT
1 AAAATTCAATATAAAAATAATT
**
58879837 AAAATTCAATATATTAATAATT
1 AAAATTCAATATAAAAATAATT
58879859 TAAGTGAAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTCAATATAAAAATAATT
Found at i:58882106 original size:11 final size:11
Alignment explanation
Indices: 58882090--58882114 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
58882080 GATTGAAATA
58882090 ATTATTTTATT
1 ATTATTTTATT
58882101 ATTATTTTATT
1 ATTATTTTATT
58882112 ATT
1 ATT
58882115 TACAATATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:58882683 original size:21 final size:21
Alignment explanation
Indices: 58882636--58882681 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
58882626 AGTATCTTGT
*
58882636 TGTTTAATGATAGATTATGAA
1 TGTTTGATGATAGATTATGAA
*
58882657 TGTTTGATGATAG-TTATGCA
1 TGTTTGATGATAGATTATGAA
58882677 TGTTT
1 TGTTT
58882682 TGTTAAGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.28, C:0.02, G:0.22, T:0.48
Consensus pattern (21 bp):
TGTTTGATGATAGATTATGAA
Found at i:58889285 original size:27 final size:27
Alignment explanation
Indices: 58889247--58889318 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
58889237 CCTTAGGGGC
58889247 ATTTCGGTAATTTTACAAGTCGAGAGT
1 ATTTCGGTAATTTTACAAGTCGAGAGT
* * *
58889274 ATTTCGGTAATTGTACAGGTCGAGGGT
1 ATTTCGGTAATTTTACAAGTCGAGAGT
* *
58889301 ATTTCAGTAATTTCACAA
1 ATTTCGGTAATTTTACAA
58889319 ATTAGGGGTA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.36
Consensus pattern (27 bp):
ATTTCGGTAATTTTACAAGTCGAGAGT
Found at i:58889684 original size:28 final size:29
Alignment explanation
Indices: 58889636--58889726 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
58889626 AAGTCTACAT
* * * *
58889636 ACATGCATATGGCACACTAGGCCC-AATT
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
58889664 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
58889693 ACATTCATATGGCCCATTTGGCCCGAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
58889722 A-ATTC
1 ACATTC
58889727 CAAGCCATGT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
28 24 0.44
29 30 0.56
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:58889969 original size:15 final size:15
Alignment explanation
Indices: 58889949--58889978 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58889939 GACTTTCGAC
58889949 TTTTCGACATTTCGG
1 TTTTCGACATTTCGG
*
58889964 TTTTCGATATTTCGG
1 TTTTCGACATTTCGG
58889979 GATTTGTCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.17, G:0.20, T:0.50
Consensus pattern (15 bp):
TTTTCGACATTTCGG
Found at i:58893701 original size:40 final size:40
Alignment explanation
Indices: 58893646--58893865 Score: 253
Period size: 40 Copynumber: 5.5 Consensus size: 40
58893636 TATTCGGATG
*
58893646 ATATCGGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
58893686 ATATCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
58893729 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * **
58893769 ACATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * * *
58893809 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
58893849 ATATCC-GGCTAAATCCC
1 ATATCCGGGCTAAGTCCC
58893866 AAAGATACTT
Statistics
Matches: 153, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 9 0.06
40 107 0.70
41 1 0.01
43 36 0.24
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:58905492 original size:42 final size:41
Alignment explanation
Indices: 58905419--58905497 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 41
58905409 TTGTGATTTA
*
58905419 CGTGTAAGACCATGTCTGGGACATCGACATCGTATATGAGTT
1 CGTGTAAGACCATATCTGGGACATCGACATCG-ATATGAGTT
* *
58905461 CGTGTAAGACCCTATCTGGGACAGT-GGCATCGATATG
1 CGTGTAAGACCATATCTGGGACA-TCGACATCGATATG
58905498 TGATTACATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
41 5 0.15
42 27 0.82
43 1 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (41 bp):
CGTGTAAGACCATATCTGGGACATCGACATCGATATGAGTT
Found at i:58905524 original size:43 final size:44
Alignment explanation
Indices: 58905362--58905533 Score: 151
Period size: 43 Copynumber: 4.0 Consensus size: 44
58905352 CATAAGATTC
* *
58905362 CGATATGTGA-TTTCATGTAAGACCACATCTGAGAC-GTTGGCAT
1 CGATATGTGAGTTACATGTAAGACCACATCTGGGACAG-TGGCAT
* * * ** *
58905405 CGATTTGTGATTTACGTGTAAGACCATGTCTGGGACA-TCGACAT
1 CGATATGTGAGTTACATGTAAGACCACATCTGGGACAGT-GGCAT
* *
58905449 CG-TATATGAGTT-CGTGTAAGACC-CTATCTGGGACAGTGGCAT
1 CGATATGTGAGTTACATGTAAGACCAC-ATCTGGGACAGTGGCAT
* * *
58905491 CGATATGTGA-TTACATGTAAAACCACGTCTGGGACATTGGCAT
1 CGATATGTGAGTTACATGTAAGACCACATCTGGGACAGTGGCAT
58905534 TGTACGAGCT
Statistics
Matches: 103, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
42 28 0.27
43 48 0.47
44 27 0.26
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (44 bp):
CGATATGTGAGTTACATGTAAGACCACATCTGGGACAGTGGCAT
Found at i:58913370 original size:42 final size:43
Alignment explanation
Indices: 58913259--58913371 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
58913249 AGCTCGTACA
**
58913259 ATGCCAACGTCCCAGACATGGTCTTACACGCAATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACAAAATCAAATATCG
* * * *
58913302 ATGTC-ACTATCCCAGACAGGGTCTTACACAAAATCAAGTAT-G
1 ATGCCAAC-GTCCCAGACATGGTCTTACACAAAATCAAATATCG
*
58913344 ATGCCAACGTCCCAGACATGTTCTTACA
1 ATGCCAACGTCCCAGACATGGTCTTACA
58913372 TGATCACACA
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACAAAATCAAATATCG
Found at i:58917203 original size:6 final size:6
Alignment explanation
Indices: 58917192--58917293 Score: 102
Period size: 6 Copynumber: 16.8 Consensus size: 6
58917182 AACCAAAATG
* *
58917192 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* * *
58917240 AGTAA-C AGAATT AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
58917289 AGAAT
1 AGAAT
58917294 GTGAATGCAA
Statistics
Matches: 79, Mismatches: 10, Indels: 14
0.77 0.10 0.14
Matches are distributed among these distances:
5 5 0.06
6 68 0.86
7 5 0.06
8 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:58917207 original size:30 final size:29
Alignment explanation
Indices: 58917171--58917293 Score: 138
Period size: 30 Copynumber: 4.1 Consensus size: 29
58917161 AAGAAACATT
* * *
58917171 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
58917201 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
* *
58917231 ATCAGTATTAGTAACAGAATTAGAATCAGA
1 ATCAGAATT-GTAACAGAATCAGAATCAGA
*
58917261 ATCAGAATTACGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
58917292 AT
1 AT
58917294 GTGAATGCAA
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
30 56 0.71
31 23 0.29
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:58917448 original size:27 final size:26
Alignment explanation
Indices: 58917411--58917476 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
58917401 AGCATGGCTG
*
58917411 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
58917437 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
58917464 CCAGAATCAGATA
1 CCAGAA-CAGATA
58917477 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:58917481 original size:27 final size:27
Alignment explanation
Indices: 58917411--58917484 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
58917401 AGCATGGCTG
* *
58917411 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
58917437 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
58917464 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
58917485 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:58917491 original size:27 final size:27
Alignment explanation
Indices: 58917435--58917492 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
58917425 GTGACAGAGT
* * *
58917435 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
58917462 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
58917489 CACC
1 CACC
58917493 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:58917860 original size:27 final size:26
Alignment explanation
Indices: 58917795--58917904 Score: 130
Period size: 27 Copynumber: 4.1 Consensus size: 26
58917785 TCGATCGGTC
* * * *
58917795 AACAGATATTGTGACAGAGTCACCAA
1 AACAAATATTGTGGCAGAGCCACCAG
*
58917821 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAAATATTGTGGCAGAGCCACCAG
*
58917848 AACAAATATTTGTGGCATAGCCACCAG
1 AACAAATA-TTGTGGCAGAGCCACCAG
*
58917875 AACAAATATTTGTGGCATAGCCACCAG
1 AACAAATA-TTGTGGCAGAGCCACCAG
58917902 AAC
1 AAC
58917905 GCTTCCTCCG
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
26 7 0.09
27 70 0.91
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (26 bp):
AACAAATATTGTGGCAGAGCCACCAG
Found at i:58918291 original size:27 final size:27
Alignment explanation
Indices: 58918103--58918290 Score: 223
Period size: 27 Copynumber: 7.0 Consensus size: 27
58918093 GGGGCAAAAT
* * ** *
58918103 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
58918130 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
58918157 GGTATTTCTACCCTAAAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
58918184 GATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
58918211 GGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
58918238 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
58918265 GGTAATTTTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
58918291 TAGTAATTTC
Statistics
Matches: 138, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 138 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:58918333 original size:27 final size:27
Alignment explanation
Indices: 58918303--58919224 Score: 1016
Period size: 27 Copynumber: 34.2 Consensus size: 27
58918293 GTAATTTCAC
* *
58918303 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
58918330 AATCGAGGGTAAAAC-GATAATTTTGTA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
* *
58918357 AA-CTGAGGGTAAACCAGTAATTCTATA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* ** * **
58918384 AATCAAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTA
58918411 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
58918438 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
58918465 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* *
58918492 AATCGAGGGTAAAACAATAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
58918519 AA-CTGAAGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* * * **
58918546 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
58918573 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
58918600 AATTGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
58918627 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* *
58918654 AATCAAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
58918681 AA-CTGAGGGTCAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
*
58918708 AATCGAGGGTAAAAC-GATAATTCTATA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
* *
58918735 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * * *
58918762 AA-CTAAGGGTAAAACATTAATTTTGCA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* ** *
58918789 AATTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
58918816 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* * **
58918843 GATCGAGGGTAAAAC-GATAATTTTACA
1 AATCGAGGGTAAAACAG-TAATTCTGTA
58918870 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
58918897 AATCAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
58918924 AA-CTTAGGGT-AAAC-GATAATTCTATA
1 AATC-GAGGGTAAAACAG-TAATTCTGTA
58918950 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
58918977 AA-CTGAGGGTAAAAC-GATAATTTTGTA
1 AATC-GAGGGTAAAACAG-TAATTCTGTA
* * *
58919004 AATCGAGTGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* *
58919031 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
58919058 AA-CTGAGGGTAAAATAGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
*
58919085 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
58919112 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
* * *
58919139 AATCAAGGATAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
*
58919166 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACAGTAATTCTGTA
58919193 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
58919220 AATCG
1 AATCG
58919225 GGAGTACTTT
Statistics
Matches: 757, Mismatches: 103, Indels: 70
0.81 0.11 0.08
Matches are distributed among these distances:
25 1 0.00
26 34 0.04
27 707 0.93
28 15 0.02
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:58925218 original size:15 final size:15
Alignment explanation
Indices: 58925198--58925252 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
58925188 ACTCTCCTCA
*
58925198 TTCTTTTCTTTCTTT
1 TTCTTTTCTCTCTTT
*
58925213 TTCTTTTCACTCTTT
1 TTCTTTTCTCTCTTT
*
58925228 TTGTTTT-TCTCTTT
1 TTCTTTTCTCTCTTT
58925242 TTCTTTT-TCTC
1 TTCTTTTCTCTC
58925253 GATCAATAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
14 16 0.46
15 19 0.54
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (15 bp):
TTCTTTTCTCTCTTT
Found at i:58931872 original size:50 final size:49
Alignment explanation
Indices: 58931797--58931979 Score: 213
Period size: 50 Copynumber: 3.7 Consensus size: 49
58931787 AAGCTCTCTG
*
58931797 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCT
1 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCT
* *
58931846 AGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGACCTAACCATCT
1 -GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCT
* * * * * * *
58931896 GATACACGTAGTATCCTACACTTAGTACTACACACGTGATCGAAGCTACCAG
1 G-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAATC-T
* * *
58931948 GTACGCATAGTAGCCTGCAATTAGTACTACAC
1 GTACACGTAGTAGCCTGCACTTAGTACTACAC
58931980 TGTACTTAGT
Statistics
Matches: 114, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
49 1 0.01
50 83 0.73
51 29 0.25
52 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (49 bp):
GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCT
Found at i:58932047 original size:50 final size:51
Alignment explanation
Indices: 58931983--58932101 Score: 141
Period size: 52 Copynumber: 2.3 Consensus size: 51
58931973 ACTACACTGT
** *
58931983 ACTTAGTACTACACATGCGACCT-AACAATCTGGTACACATAGTAGCCTGC
1 ACTTAGTACTACACATGCGACCTAAACAATCTGAAACACATAGTAGCATGC
* * * *
58932033 ACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACATAGTAGCATGC
1 ACTTAGTACTACACATGCGACCT-AAACAATCTGAAACACATAGTAGCATGC
* *
58932085 ACATAGTACTACGCATG
1 ACTTAGTACTACACATG
58932102 TGTTCTCACA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 21 0.37
52 36 0.63
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (51 bp):
ACTTAGTACTACACATGCGACCTAAACAATCTGAAACACATAGTAGCATGC
Found at i:58948445 original size:47 final size:47
Alignment explanation
Indices: 58948388--58948497 Score: 177
Period size: 47 Copynumber: 2.3 Consensus size: 47
58948378 AGTGAATTCG
*
58948388 GACTCAACTCAACGAGTTC-GAATGCCTAGTTACATCTCACAAACTCA
1 GACTCAACTCAACGAGTTCAG-ATGCCTAGTTACATATCACAAACTCA
* *
58948435 GACTCAACTCAATGAGTTCAGATGCCTAGTTACATATCACGAACTCA
1 GACTCAACTCAACGAGTTCAGATGCCTAGTTACATATCACAAACTCA
58948482 GACTCAACTCAACGAG
1 GACTCAACTCAACGAG
58948498 CTCGGAACTC
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
47 57 0.98
48 1 0.02
ACGTcount: A:0.35, C:0.28, G:0.15, T:0.23
Consensus pattern (47 bp):
GACTCAACTCAACGAGTTCAGATGCCTAGTTACATATCACAAACTCA
Found at i:58949393 original size:48 final size:48
Alignment explanation
Indices: 58949292--58949423 Score: 185
Period size: 48 Copynumber: 2.7 Consensus size: 48
58949282 ACCGAAGCTC
* **
58949292 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTT--TACTACACACATGACCTAACAA
* *
58949342 TCTGGTACACGTAGTAGCCTGCACTTTACTACACACATGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTTACTACACACATGACCTAACAA
*
58949390 TCTGATACACATAGTAGCCTGCAC-TTACTACACA
1 TCTGGTACACATAGTAGCCTGCACTTTACTACACA
58949424 TGTGATCGAA
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
47 10 0.13
48 41 0.55
50 24 0.32
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (48 bp):
TCTGGTACACATAGTAGCCTGCACTTTACTACACACATGACCTAACAA
Found at i:58949478 original size:17 final size:17
Alignment explanation
Indices: 58949456--58949490 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
58949446 GCATAGTAGC
58949456 CTGCACTTAGTACTACA
1 CTGCACTTAGTACTACA
58949473 CTGCACTTAGTACTACA
1 CTGCACTTAGTACTACA
58949490 C
1 C
58949491 ATGCGACCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.31, G:0.11, T:0.29
Consensus pattern (17 bp):
CTGCACTTAGTACTACA
Found at i:58953118 original size:5 final size:5
Alignment explanation
Indices: 58953104--58953134 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
58953094 CATGTTTTTT
*
58953104 TAAAA AAAAA TAAAA TAAAA TAAAA TAAAA T
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA T
58953135 TTAAATCGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:58954007 original size:40 final size:40
Alignment explanation
Indices: 58953961--58954198 Score: 280
Period size: 40 Copynumber: 6.1 Consensus size: 40
58953951 CGGAATTTAA
** *
58953961 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
58954001 CCGG--ATAGTAACTCGCACAAATGCCTTCGGGACTTA-C
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58954038 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58954078 CCGGATTTAGTAACTCGCACAAATGCCTTC-GG-CTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
58954116 CCGGAT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
58954154 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
58954194 CCGGA
1 CCGGA
58954199 CATCATTCAA
Statistics
Matches: 179, Mismatches: 9, Indels: 20
0.86 0.04 0.10
Matches are distributed among these distances:
36 20 0.11
37 10 0.06
38 49 0.27
39 36 0.20
40 53 0.30
41 11 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:58954081 original size:77 final size:76
Alignment explanation
Indices: 58953961--58954198 Score: 279
Period size: 77 Copynumber: 3.1 Consensus size: 76
58953951 CGGAATTTAA
** *
58953961 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGGATAGTAACTCGCACAAATGCC
1 CCGGAT-TAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAGTAACTCGCACAAATGCC
58954026 TTCGGGACTTA-C
64 TTCGGGACTTAGC
*
58954038 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCGGA-TTAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA--TAGTAACTCGCACAAATG
*
58954103 CCTTC-GG-CTTAGT
62 CCTTCGGGACTTAGC
* * *
58954116 CCGGATTAGTACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-G
1 CCGGATTAGTACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATA--GTAAC-TCGCACAAATG
58954179 CCTTCGGGACTTAGC
62 CCTTCGGGACTTAGC
58954194 CCGGA
1 CCGGA
58954199 CATCATTCAA
Statistics
Matches: 140, Mismatches: 10, Indels: 21
0.82 0.06 0.12
Matches are distributed among these distances:
74 2 0.01
75 3 0.02
76 38 0.27
77 56 0.40
78 18 0.13
79 23 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (76 bp):
CCGGATTAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAGTAACTCGCACAAATGCCTT
CGGGACTTAGC
Found at i:58962590 original size:40 final size:40
Alignment explanation
Indices: 58962541--58962685 Score: 211
Period size: 40 Copynumber: 3.6 Consensus size: 40
58962531 ACTACTTGCT
* *
58962541 CAAATGCCTTCTGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
58962581 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
58962621 CAAATGCCTTCGGGACTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
**
58962661 CAAATGTTTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
58962686 TTATCATCCG
Statistics
Matches: 96, Mismatches: 7, Indels: 3
0.91 0.07 0.03
Matches are distributed among these distances:
39 3 0.03
40 92 0.96
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:58971329 original size:15 final size:15
Alignment explanation
Indices: 58971309--58971338 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58971299 CAATGTATGA
58971309 AGTTATGTAACGCCC
1 AGTTATGTAACGCCC
*
58971324 AGTTATGTAATGCCC
1 AGTTATGTAACGCCC
58971339 CAAATTTTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (15 bp):
AGTTATGTAACGCCC
Found at i:58972924 original size:29 final size:28
Alignment explanation
Indices: 58972865--58972975 Score: 105
Period size: 29 Copynumber: 3.9 Consensus size: 28
58972855 GTGAGCATGA
* * * *
58972865 ATATGAATGTGACTGGCCCTAACGGACC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
58972893 ATATAAATGTGATTAGGGCCTAATGGGCC
1 ATATGAATGTGATT-GGGCCTAATGGGCC
** * *
58972922 ATATTTAGGTGATTTGGGTCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
58972951 ATATGAATATGATTGGGCTTAATGG
1 ATATGAATGTGATTGGGCCTAATGG
58972976 CCAGATACAT
Statistics
Matches: 66, Mismatches: 15, Indels: 4
0.78 0.18 0.05
Matches are distributed among these distances:
28 23 0.35
29 41 0.62
30 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:58985109 original size:29 final size:28
Alignment explanation
Indices: 58985053--58985167 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
58985043 GTGAGCATGA
* * *
58985053 ATATGAATGTGACTGGGCCTAATCGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
58985081 ATATAAATGTGATTAGGGCCTAATGGGCC
1 ATATAAATGTGATT-GGGCCTAATGGGCC
* * ** *
58985110 ATATATAGGTGATTTGGGTATAATAGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
58985139 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
58985167 A
1 A
58985168 GATACAGATA
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
28 26 0.37
29 42 0.60
30 2 0.03
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:58990937 original size:40 final size:40
Alignment explanation
Indices: 58990881--58991097 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
58990871 TGGATGATAA
* * * *
58990881 CCGGGCTAAGTTCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
58990921 CCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
58990961 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
58991001 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
58991041 CCGGGCTATGT-CCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
58991080 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
58991098 TACTTGGCTT
Statistics
Matches: 160, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
38 7 0.04
39 32 0.20
40 121 0.76
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:58999064 original size:40 final size:40
Alignment explanation
Indices: 58999007--58999224 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
58998997 TGGATGATAA
* *
58999007 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTA-TAT
* *
58999047 CCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
58999087 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
*
58999127 CCGGGCTAAGTCCCGAAGGCATTGGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* * * * *
58999167 CTGGGCTATGTCCCGAAGGCATTCGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
* *
58999207 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
58999225 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 16 0.10
40 143 0.90
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:59007914 original size:30 final size:30
Alignment explanation
Indices: 59007880--59007940 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
59007870 TCCTTAACTC
59007880 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * * *
59007910 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
59007940 A
1 A
59007941 GGCTCGGGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:59009676 original size:28 final size:28
Alignment explanation
Indices: 59009636--59009705 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
59009626 ATAGTAAGTC
*
59009636 CGCACACTTAGTGCT-TAATAATGAAACT
1 CGCACACTTAGTGCTAT-ACAATGAAACT
*
59009664 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATGAAACT
59009692 CGCACACTTAGTGC
1 CGCACACTTAGTGC
59009706 CAATCTTATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATGAAACT
Found at i:59022852 original size:27 final size:26
Alignment explanation
Indices: 59022804--59022863 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
59022794 GCGAGGCTGC
*
59022804 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
59022831 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
59022857 CAGATAT
1 CAGATAT
59022864 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:59030002 original size:25 final size:24
Alignment explanation
Indices: 59029971--59030028 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
59029961 TTTTTCTCCT
* *
59029971 AAATTTTAATTTTATTTAATTATTT
1 AAATTTTAA-TTTATTGAATTATTA
*
59029996 AATTTTTCAATTTATTGAATTATTA
1 AAATTTT-AATTTATTGAATTATTA
59030021 AAATTTTA
1 AAATTTTA
59030029 TATTAATTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 1 0.04
25 25 0.89
26 2 0.07
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (24 bp):
AAATTTTAATTTATTGAATTATTA
Found at i:59031808 original size:37 final size:37
Alignment explanation
Indices: 59031767--59031842 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
59031757 AAATTATTAT
*
59031767 GTTAGGTTAATAATGATATGAATATATTTCTAATAAA
1 GTTAGCTTAATAATGATATGAATATATTTCTAATAAA
59031804 GTTAGCTTAATAATGATATGAATATATTTCTAATAAA
1 GTTAGCTTAATAATGATATGAATATATTTCTAATAAA
59031841 GT
1 GT
59031843 ATGCAAATCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.42, C:0.04, G:0.13, T:0.41
Consensus pattern (37 bp):
GTTAGCTTAATAATGATATGAATATATTTCTAATAAA
Found at i:59032917 original size:18 final size:18
Alignment explanation
Indices: 59032894--59032933 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
59032884 AGAATTCGGT
59032894 TTAATTCTTATAAAAAAA
1 TTAATTCTTATAAAAAAA
* *
59032912 TTAATTTTTATAAAATAA
1 TTAATTCTTATAAAAAAA
59032930 TTAA
1 TTAA
59032934 AGTGCACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (18 bp):
TTAATTCTTATAAAAAAA
Found at i:59033961 original size:39 final size:39
Alignment explanation
Indices: 59033918--59034039 Score: 118
Period size: 39 Copynumber: 3.1 Consensus size: 39
59033908 GGACTTTAGC
* * * *
59033918 CCGGACATATTTCTAGCACGTAGCCTACAAACCTTAAGT
1 CCGGACATAGTTCCAGCACATAGCCTACAAACCCTAAGT
* * **
59033957 CCGGATATAGTTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGACATAGTTCCAGCACATAGCCTACAAACCCTAAGT
* * * * **
59033996 CCGGATATAATTCCAACACATAGCCTGCGGACCCTAAGT
1 CCGGACATAGTTCCAGCACATAGCCTACAAACCCTAAGT
59034035 CCGGA
1 CCGGA
59034040 TATACATCAC
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (39 bp):
CCGGACATAGTTCCAGCACATAGCCTACAAACCCTAAGT
Found at i:59034040 original size:39 final size:39
Alignment explanation
Indices: 59033952--59034043 Score: 166
Period size: 39 Copynumber: 2.4 Consensus size: 39
59033942 CTACAAACCT
* *
59033952 TAAGTCCGGATATAGTTCCAGCACATAGCCTGCGGACCC
1 TAAGTCCGGATATAATTCCAACACATAGCCTGCGGACCC
59033991 TAAGTCCGGATATAATTCCAACACATAGCCTGCGGACCC
1 TAAGTCCGGATATAATTCCAACACATAGCCTGCGGACCC
59034030 TAAGTCCGGATATA
1 TAAGTCCGGATATA
59034044 CATCACTGAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 51 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (39 bp):
TAAGTCCGGATATAATTCCAACACATAGCCTGCGGACCC
Found at i:59039843 original size:7 final size:7
Alignment explanation
Indices: 59039833--59039861 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
59039823 GCCATAGCCC
59039833 ATTTCAT
1 ATTTCAT
59039840 ATTTCAT
1 ATTTCAT
59039847 ATTTCAT
1 ATTTCAT
59039854 ATTTCAT
1 ATTTCAT
59039861 A
1 A
59039862 ACACTGGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (7 bp):
ATTTCAT
Found at i:59039889 original size:31 final size:31
Alignment explanation
Indices: 59039848--59039911 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
59039838 ATATTTCATA
*
59039848 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
59039879 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
59039910 TT
1 TT
59039912 ACTGTATCGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:59040153 original size:23 final size:23
Alignment explanation
Indices: 59040127--59040289 Score: 227
Period size: 23 Copynumber: 7.0 Consensus size: 23
59040117 TTGCCTCTTA
* *
59040127 ATAACTAGGGCAAAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
* *
59040150 ATAACTAGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTT
* *
59040173 ATAACTGGGGCGTAAGCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTT
59040196 GATAACTGGGGCATAAGCCCTTTT
1 -ATAACTGGGGCATAAGCCCTTTT
*
59040220 GATAACTGGGGCATAAGCCCTTTA
1 -ATAACTGGGGCATAAGCCCTTTT
* *
59040244 ATAACTAGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTT
59040267 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
59040290 TCACTTCCTC
Statistics
Matches: 127, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
23 83 0.65
24 44 0.35
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTT
Found at i:59040364 original size:20 final size:20
Alignment explanation
Indices: 59040339--59040405 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
59040329 TTATGAATAC
*
59040339 ATCATGTGCATATCATAAAT
1 ATCATGTGCATATCATACAT
59040359 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
59040379 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
59040399 ACCATGT
1 ATCATGT
59040406 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:59040474 original size:25 final size:25
Alignment explanation
Indices: 59040442--59040489 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
59040432 ATACATAAAC
* *
59040442 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
59040467 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
59040490 CATGTTATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:59047771 original size:24 final size:24
Alignment explanation
Indices: 59047668--59047832 Score: 239
Period size: 23 Copynumber: 7.0 Consensus size: 24
59047658 GCTTTATCAT
*
59047668 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
59047693 ATAACTGGGGCAAAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
59047716 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
59047739 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
59047763 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
59047787 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
59047810 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
59047833 TCACTTCCTC
Statistics
Matches: 129, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
22 3 0.02
23 58 0.45
24 56 0.43
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:59047802 original size:71 final size:70
Alignment explanation
Indices: 59047668--59047832 Score: 260
Period size: 71 Copynumber: 2.3 Consensus size: 70
59047658 GCTTTATCAT
*
59047668 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAG
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAG
59047732 CCCTTTA
64 CCCTTTA
* * *
59047739 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTT-ATAACTGGGGCATAAGC
59047804 CCTTTA
65 CCTTTA
59047810 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
59047833 TCACTTCCTC
Statistics
Matches: 88, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
70 31 0.35
71 57 0.65
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (70 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTATAACTGGGGCATAAGCC
CTTTA
Found at i:59047907 original size:20 final size:20
Alignment explanation
Indices: 59047882--59047948 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
59047872 TTATGAATAC
*
59047882 ATCATGTGCATATCAAACAT
1 ATCATGTGCATATCATACAT
59047902 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
59047922 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
59047942 ACCATGT
1 ATCATGT
59047949 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:59048017 original size:25 final size:25
Alignment explanation
Indices: 59047985--59048032 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
59047975 ATACATAAAC
* * *
59047985 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
59048010 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
59048033 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:59051047 original size:39 final size:40
Alignment explanation
Indices: 59051004--59051147 Score: 172
Period size: 39 Copynumber: 3.7 Consensus size: 40
59050994 ACCAACTCGA
* * **
59051004 AGCCTGCGGGA-CTTTAG-CCTGGATATATTTCCAGCATGT
1 AGCCTGCGGGACCTTAAGTCC-GGATATAATTCCAGCACAT
*
59051043 AGCCTGC-AGACCTTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGGACCTTAAGTCCGGATATAATTCCAGCACAT
*
59051082 AGCCTGC-GGACCCTAAGTCCGGATATAATTCCAGCACAT
1 AGCCTGCGGGACCTTAAGTCCGGATATAATTCCAGCACAT
* *
59051121 AGCTTGC-GGACCCTAAGTCCGGATATA
1 AGCCTGCGGGACCTTAAGTCCGGATATA
59051148 CATCACTGAA
Statistics
Matches: 95, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
38 2 0.02
39 91 0.96
40 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AGCCTGCGGGACCTTAAGTCCGGATATAATTCCAGCACAT
Found at i:59063572 original size:26 final size:26
Alignment explanation
Indices: 59063542--59063594 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
59063532 CACCACTGAA
*
59063542 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
59063568 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
59063594 T
1 T
59063595 TTTTATTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.34, G:0.23, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:59063728 original size:103 final size:102
Alignment explanation
Indices: 59063510--59063872 Score: 549
Period size: 103 Copynumber: 3.6 Consensus size: 102
59063500 TAGCCGTTAT
** *
59063510 TGGTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
*
59063575 ATCAGCACATAGCAA-CCCCTTTTTATTTCAAAGATA
66 ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
*
59063611 TGGTGGATATCGCACTTAGCA-CACCAATGAATCAGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
59063675 AATCAGCACATAGCAACCCCCCTTTTCATTTCAAAGATA
65 AATCAGCACATAGCAA-CCCCCTTTTCATTTCAAAGATA
59063714 TGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTC-GGG
1 TGGTGGATATCGCACTTAGCACCACCAATG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
*
59063778 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 AATCAGCACATAGCAACCCCCTTT-TCATTTCAAAGATA
* * * **
59063817 TGGTGGATA-CGCACATAGCACCACCCATAAATC-GGG-ATCAGCACACAGCAACCCCT
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
59063873 TTTATATACA
Statistics
Matches: 244, Mismatches: 12, Indels: 14
0.90 0.04 0.05
Matches are distributed among these distances:
99 18 0.07
100 39 0.16
101 43 0.18
102 25 0.10
103 82 0.34
104 8 0.03
105 29 0.12
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (102 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
ATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATA
Found at i:59063784 original size:25 final size:25
Alignment explanation
Indices: 59063750--59063797 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
59063740 AATGAAATCG
*
59063750 GGGAATCAGCACTTAGCAACCCCTC
1 GGGAATCAGCACATAGCAACCCCTC
59063775 GGGAATCAGCACATAGCAACCCC
1 GGGAATCAGCACATAGCAACCCC
59063798 CTTTCACATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.35, G:0.21, T:0.12
Consensus pattern (25 bp):
GGGAATCAGCACATAGCAACCCCTC
Found at i:59065910 original size:12 final size:12
Alignment explanation
Indices: 59065893--59065918 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
59065883 ATAGTCCGAA
59065893 TTAGCTCATCAT
1 TTAGCTCATCAT
59065905 TTAGCTCATCAT
1 TTAGCTCATCAT
59065917 TT
1 TT
59065919 CTCGGTACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (12 bp):
TTAGCTCATCAT
Found at i:59070869 original size:26 final size:26
Alignment explanation
Indices: 59070839--59070890 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
59070829 CACCAATGAA
*
59070839 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
59070865 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
59070891 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:59070944 original size:103 final size:104
Alignment explanation
Indices: 59070606--59070968 Score: 582
Period size: 103 Copynumber: 3.6 Consensus size: 104
59070596 TAACCGTTAT
* *
59070606 TGGTGGAT-CCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
59070670 AATCAGCACATAGCAACCCCCTTT--TATTTC----ATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
59070703 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
59070768 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
59070807 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
59070871 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* * * **
59070910 TGGTGGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
59070969 TTATATACAA
Statistics
Matches: 250, Mismatches: 8, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
97 8 0.03
98 78 0.31
100 5 0.02
103 95 0.38
104 64 0.26
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:59074226 original size:12 final size:12
Alignment explanation
Indices: 59074209--59074233 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
59074199 TAGTTAAACA
59074209 TAACACCAATTG
1 TAACACCAATTG
59074221 TAACACCAATTG
1 TAACACCAATTG
59074233 T
1 T
59074234 GTTTGGATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (12 bp):
TAACACCAATTG
Found at i:59079988 original size:30 final size:30
Alignment explanation
Indices: 59079954--59080013 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
59079944 CTTTAATACG
59079954 AACTTTGGAAAAATTACAATTTTGCCCCTA
1 AACTTTGGAAAAATTACAATTTTGCCCCTA
* * * * *
59079984 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACAATTTTGCCCCTA
59080014 GGCTTGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACAATTTTGCCCCTA
Found at i:59080854 original size:20 final size:20
Alignment explanation
Indices: 59080829--59080874 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
59080819 GATATTACAA
59080829 GTGTGGCTTGGGAAACGCCC
1 GTGTGGCTTGGGAAACGCCC
*
59080849 GTGTGGCTTGGGACACGCCC
1 GTGTGGCTTGGGAAACGCCC
59080869 GTGTGG
1 GTGTGG
59080875 GCCGACCATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.11, C:0.24, G:0.43, T:0.22
Consensus pattern (20 bp):
GTGTGGCTTGGGAAACGCCC
Found at i:59082568 original size:50 final size:50
Alignment explanation
Indices: 59082483--59082588 Score: 142
Period size: 50 Copynumber: 2.1 Consensus size: 50
59082473 TACACGAAAT
* * * * *
59082483 CATATATGGATGCCAATGTCATATTCCAGATATGGTCTTACATGGGACCA
1 CATATATCGATACCAATGCCATAGTCCAGAAATGGTCTTACATGGGACCA
*
59082533 CATATATCGATACCAATGCCAT-GTCCTAGAAATGGTCTTACATGGGATCA
1 CATATATCGATACCAATGCCATAGTCC-AGAAATGGTCTTACATGGGACCA
59082583 CATATA
1 CATATA
59082589 ACCCTAATGT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
49 3 0.06
50 46 0.94
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (50 bp):
CATATATCGATACCAATGCCATAGTCCAGAAATGGTCTTACATGGGACCA
Found at i:59088776 original size:42 final size:42
Alignment explanation
Indices: 59088689--59088781 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 42
59088679 CATATCAATG
* * *
59088689 CCATAT-CCTGGATATGGTCTTACATGAAATATCATATCGACA
1 CCATATCCCT-GACATGGTCTTACACGAAATATCATACCGACA
* * *
59088731 CCATGTCCCTGACATGGTCTTATACGAAATCA-CATACCGATA
1 CCATATCCCTGACATGGTCTTACACGAAAT-ATCATACCGACA
59088773 CCATATCCC
1 CCATATCCC
59088782 AAATATTGCC
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
42 38 0.90
43 4 0.10
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (42 bp):
CCATATCCCTGACATGGTCTTACACGAAATATCATACCGACA
Found at i:59092470 original size:48 final size:48
Alignment explanation
Indices: 59092399--59092641 Score: 329
Period size: 48 Copynumber: 5.2 Consensus size: 48
59092389 TCTCATATCG
**
59092399 ATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* ** * *
59092447 ATGCCATATCTTAGATATGGTCTTACATGGGTTCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
*
59092495 ATGCCATGTCCTAGACATGGTC-TAGCATGGGAT--CA-A---ATGCCA
1 ATGCCATGTCCCAGACATGGTCTTA-CATGGGATCACATATCGATGCCA
*
59092537 ATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
59092585 ATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATCGATTCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
59092633 ATGCCATGT
1 ATGCCATGT
59092642 GTAACACCCC
Statistics
Matches: 171, Mismatches: 16, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
42 34 0.20
43 2 0.01
44 2 0.01
45 2 0.01
46 2 0.01
47 2 0.01
48 127 0.74
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:59092535 original size:90 final size:90
Alignment explanation
Indices: 59092399--59092619 Score: 282
Period size: 90 Copynumber: 2.4 Consensus size: 90
59092389 TCTCATATCG
** ** *
59092399 ATGCCATGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCAATGCCATATCTTAGATA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGAT--CA-A---ATGCCAATGCCATATCCCAGACA
* *
59092464 TGGTCTTACATGGGTTCACATATCGATGCCA
60 TGGTCTTACACGGGATCACATATCGATGCCA
* *
59092495 ATGCCATGTCCTAGACATGGTC-TAGCATGGGATCAAATGCCAATGCCATGTCCCAGACATGGTC
1 ATGCCATGTCCCAGACATGGTCTTA-CATGGGATCAAATGCCAATGCCATATCCCAGACATGGTC
59092559 TTACACGGGATCACATATCGATGCCA
65 TTACACGGGATCACATATCGATGCCA
*
59092585 ATGCCATGTCCCAGATATGGTCTTACATGGGATCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCA
59092620 CATATCGATT
Statistics
Matches: 112, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
90 78 0.70
91 2 0.02
93 1 0.01
94 2 0.02
95 2 0.02
96 27 0.24
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (90 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCAAATGCCAATGCCATATCCCAGACATGGTCT
TACACGGGATCACATATCGATGCCA
Found at i:59094116 original size:40 final size:40
Alignment explanation
Indices: 59094031--59094207 Score: 184
Period size: 40 Copynumber: 4.5 Consensus size: 40
59094021 GCTACTCGTT
* *
59094031 CAAATGCCTTCGGGACAT-AGCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
59094070 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
59094110 CCAATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
59094149 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
59094190 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
59094208 GGCCGGACAT
Statistics
Matches: 118, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 49 0.42
40 54 0.46
41 13 0.11
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:59094155 original size:39 final size:40
Alignment explanation
Indices: 59094031--59094208 Score: 177
Period size: 39 Copynumber: 4.5 Consensus size: 40
59094021 GCTACTCGTT
* * **
59094031 CAAATGCCTTCGGGACATAGCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCA
* * *
59094070 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCA
*
59094110 CCAATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCA
* * * * *
59094149 CAAATGCCTTC-GGATCTTAGTCCG-GATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGAAAT-TAGTAAC-TCGCA
59094190 CAAA-GCCTTCGGGACTTAG
1 CAAATGCCTTCGGGACTTAG
59094209 GCCGGACATC
Statistics
Matches: 117, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 55 0.47
40 49 0.42
41 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCA
Found at i:59094198 original size:79 final size:80
Alignment explanation
Indices: 59094031--59094208 Score: 202
Period size: 79 Copynumber: 2.2 Consensus size: 80
59094021 GCTACTCGTT
* * **
59094031 CAAATGCCTTCGGGACATAGCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
59094095 ATTTAGTAACTCGCAC
65 ATATAGTAACTAGCAC
* **
59094111 CAATGCCTTCGGG-CTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
59094174 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
59094190 CAAAGCCTTCGGGACTTAG
1 CAAAGCCTTCGGGACTTAG
59094209 GCCGGACATC
Statistics
Matches: 82, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
78 11 0.13
79 59 0.72
80 12 0.15
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGAAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:59095409 original size:56 final size:56
Alignment explanation
Indices: 59095342--59095461 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
59095332 TATTAGTTTA
59095342 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
59095398 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
59095454 TTGCCCAT
1 TTGCCCAT
59095462 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:59095879 original size:48 final size:47
Alignment explanation
Indices: 59095759--59095991 Score: 182
Period size: 48 Copynumber: 5.3 Consensus size: 47
59095749 GCTGTCACAC
* * *
59095759 CATGTCCCAGACATGATCTTACACGGGATCACATATGGATGCCAATG
1 CATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
* *
59095806 CCATGTCCCAGACATAGTCTAACATGGGATCACATATCGATGCCAATG
1 -CATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
*
59095854 TCATGTCCCAGACATGGTCTTACAT--G-TCA-TTA-CGATG-C----
1 -CATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
*
59095892 CATGTCCCAGACATGGTCTTACAT--G-TCA-TTA-CGATG-C----
1 CATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
* ** *
59095929 CATGTCCCAGACATGGTCTTACACGAAATCATATATCGATGCCAATG
1 CATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
*
59095976 CCATATCCCAGGACAT
1 -CATGTCCCA-GACAT
59095992 ATCGATGCCA
Statistics
Matches: 160, Mismatches: 13, Indels: 23
0.82 0.07 0.12
Matches are distributed among these distances:
37 60 0.38
40 3 0.02
41 2 0.01
42 6 0.04
43 6 0.04
44 2 0.01
45 3 0.02
46 1 0.01
48 72 0.45
49 5 0.03
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
Found at i:59095897 original size:37 final size:37
Alignment explanation
Indices: 59095855--59095951 Score: 194
Period size: 37 Copynumber: 2.6 Consensus size: 37
59095845 ATGCCAATGT
59095855 CATGTCCCAGACATGGTCTTACATGTCATTACGATGC
1 CATGTCCCAGACATGGTCTTACATGTCATTACGATGC
59095892 CATGTCCCAGACATGGTCTTACATGTCATTACGATGC
1 CATGTCCCAGACATGGTCTTACATGTCATTACGATGC
59095929 CATGTCCCAGACATGGTCTTACA
1 CATGTCCCAGACATGGTCTTACA
59095952 CGAAATCATA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (37 bp):
CATGTCCCAGACATGGTCTTACATGTCATTACGATGC
Found at i:59096251 original size:144 final size:143
Alignment explanation
Indices: 59095988--59096810 Score: 624
Period size: 144 Copynumber: 6.0 Consensus size: 143
59095978 ATATCCCAGG
* * * * * * * *
59095988 ACATATCGATGCCAATGCCATTTCCCAAGCATTGTCATACTTGGGATCATATATCAATGTCAATG
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAATG
* * * * ** * * * *
59096053 CCATGTCCTAGACATGGTTTTACACAGGATCACAAATCAATGCCAATGCAATGTCCCAGATATGG
66 CCATGTCCCAAACATAGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
59096118 TCTTACATAGAATC
131 TCTTACATAG-ATC
* * *
59096132 ACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAATG
* *
59096197 CCTTGTCCCAAACATAGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCTAGACATGG
66 CCATGTCCCAAACATAGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
59096262 TCTTACAT-G-TC
131 TCTTACATAGATC
* * * **** *
59096273 A-TTA-CGAT----A--CCATGTCCTAGGA-ATGGTCTTACACAAAATCATATATCGATGCC-A-
1 ACATATCGATGCCAATGCCATGTCCCA-AACATGGTCTTACATGGGATCACATATCGATGCCAAT
* * * * * * * ** * *
59096327 --CATATCCCAAGCATA-TC---GAT--G-CCA-ATA-CCATTTCCCAA--ACAT-TTTCATACT
65 GCCATGTCCCAAACATAGTCTTACATGGGATCACATATCGA--TGCCAATGCCATGTCCCAGACA
* * *
59096378 TGG---GA-ACACAT-
128 TGGTCTTACATAGATC
* * * * *
59096389 A-T---CGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCAATGCCAATT
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAATG
* * *
59096450 CCATGTCCCAAACA-ATGTCTTACATGGGATCACAAATTGATTCCAATGCCATGTCCCA-AGCAT
66 CCATGTCCCAAACATA-GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGA-CAT
* ** *
59096513 GGTCCTACACGGAATG
129 GGTCTTACATAG-ATC
* * * *
59096529 ACATATTGATGCTAATGCCATGTCGCAAACATGGTCTAACATGGGATCACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAATG
* * * ** * *
59096594 CCATGCCCCAGACATGGTCTTACACAGGATCACATAACGATGCCAATGCCATGTCCCAGACATAG
66 CCATGTCCCAAACATAGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
* **
59096659 TCTTATACGGGATC
131 TCTTACA-TAGATC
*
59096673 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAATT
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAATG
* * **
59096738 CCATGTCCCAAACATGGTCTTACAAGGGATCACATATCGATGCCAATGCCATGTCCTGGACATGG
66 CCATGTCCCAAACATAGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
59096803 TCTTACAT
131 TCTTACAT
59096811 GTCATTACGA
Statistics
Matches: 529, Mismatches: 107, Indels: 87
0.73 0.15 0.12
Matches are distributed among these distances:
114 4 0.01
115 1 0.00
116 3 0.01
117 1 0.00
118 1 0.00
119 9 0.02
120 38 0.07
121 4 0.01
122 7 0.01
123 2 0.00
124 11 0.02
125 4 0.01
128 4 0.01
129 12 0.02
130 1 0.00
131 7 0.01
132 3 0.01
133 40 0.08
134 9 0.02
135 1 0.00
137 1 0.00
138 2 0.00
139 6 0.01
140 3 0.01
141 3 0.01
143 1 0.00
144 348 0.66
145 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (143 bp):
ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAATG
CCATGTCCCAAACATAGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
TCTTACATAGATC
Found at i:59096269 original size:48 final size:48
Alignment explanation
Indices: 59095988--59096270 Score: 343
Period size: 48 Copynumber: 5.9 Consensus size: 48
59095978 ATATCCCAGG
* * * *
59095988 ACATATCGATGCCAATGCCATTTCCCA-AGCATTGTCATACTTGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGA-CATGGTCTTACATGGGATC
* * * * * **
59096036 ATATATCAATGTCAATGCCATGTCCTAGACATGGTTTTACACAGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * * * *
59096084 ACAAATCAATGCCAATGCAATGTCCCAGATATGGTCTTACATAGAATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* *
59096132 ACATATCGATGCCAATGCCATGTCCCAGACATGATCTTACACGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * *
59096180 ACATATCGATGCCAATGCCTTGTCCCAAACATAGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
*
59096228 ACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG
59096271 TCATTACGAT
Statistics
Matches: 197, Mismatches: 37, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
48 196 0.99
49 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (48 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
Found at i:59096411 original size:48 final size:48
Alignment explanation
Indices: 59096338--59096811 Score: 599
Period size: 48 Copynumber: 9.9 Consensus size: 48
59096328 ATATCCCAAG
* * ** * * *
59096338 CATATCGATGCCAATACCATTTCCCAAACATTTTCATACTTGGGAACA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
*
59096386 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* * *
59096434 CAAATCAATGCCAATTCCATGTCCCAAACAAT-GTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAAC-ATGGTCTTACATGGGATCA
* * * * * * * *
59096482 CAAATTGATTCCAATGCCATGTCCCAAGCATGGTCCTACACGGAATGA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* * * *
59096530 CATATTGATGCTAATGCCATGTCGCAAACATGGTCTAACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* * **
59096578 CATATCGATGCCAATGCCATGCCCCAGACATGGTCTTACACAGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* * * * *
59096626 CATAACGATGCCAATGCCATGTCCCAGACATAGTCTTATACGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
59096674 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* *
59096722 CATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACAAGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
***
59096770 CATATCGATGCCAATGCCATGTCCTGGACATGGTCTTACATG
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATG
59096812 TCATTACGAT
Statistics
Matches: 368, Mismatches: 56, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
47 2 0.01
48 364 0.99
49 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (48 bp):
CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
Found at i:59096458 original size:349 final size:352
Alignment explanation
Indices: 59095758--59096617 Score: 1135
Period size: 349 Copynumber: 2.5 Consensus size: 352
59095748 GGCTGTCACA
* * * *
59095758 CCATGTCCCAGACATGATCTTACACGGGATCACATATGGATGCCAATGCCATGTCCCAGACAT-A
1 CCATGTCCCAGAAATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGA
* * * *
59095822 GTCTAACATGGGATCACATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACAT--G-T--C
66 -TCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCAC
* *
59095882 AT-T--A---CGATGCCATGTCCCAGACATGGTCTTACATGTCATTACGATGCCATGTCCCAGAC
130 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGTCATTACGATACCATGTCCCAGAC
* * *
59095941 ATGGTCTTACACGAAATCATATATCGATGCCAATGCCATATCCCAGGACATATCGATGCCAATGC
195 ATGGTCTTACACAAAATCATATATCGATGCCAA--CCATATCCCAAGACATATCGATGCCAATAC
* * * * *
59096006 CATTTCCCAAGCATTGTCATACTTGGGATCATATATCAATGTCAATGCCATGTCCTAGACATGGT
258 CATTTCCCAAACATTGTCATACTTGGGAACACATATCAATGCCAATGCCATGTCCCAGACATGGT
*
59096071 TTTACACAGGATCACAAATCAATGCCAATG
323 CTTACACAGGATCACAAATCAATGCCAATG
* * * *
59096101 CAATGTCCCAGATATGGTCTTACATAGAATCACATATCGATGCCAATGCCATGTCCCAGACATGA
1 CCATGTCCCAGAAATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGA
* *
59096166 TCTTACACGGGATCACATATCGATGCCAATGCCTTGTCCCAAACATAGTCTTACATGGGATCACA
66 TCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
* *
59096231 TATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGTCATTACGATACCATGTCCTAGGA-
131 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGTCATTACGATACCATGTCCCA-GAC
59096295 ATGGTCTTACACAAAATCATATATCGATGCC-A-CATATCCCAAG-CATATCGATGCCAATACCA
195 ATGGTCTTACACAAAATCATATATCGATGCCAACCATATCCCAAGACATATCGATGCCAATACCA
* *
59096357 TTTCCCAAACATTTTCATACTTGGGAACACATATCGATGCCAATGCCATGTCCCAGACATGGTCT
260 TTTCCCAAACATTGTCATACTTGGGAACACATATCAATGCCAATGCCATGTCCCAGACATGGTCT
** *
59096422 TACATGGGATCACAAATCAATGCCAATT
325 TACACAGGATCACAAATCAATGCCAATG
* * * *
59096450 CCATGTCCCAAACAAT-GTCTTACATGGGATCACAAATTGATTCCAATGCCATGTCCCA-AGCAT
1 CCATGTCCCAGA-AATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGA-CAT
* * * * * * * *
59096513 GGTCCTACACGGAATGACATATTGATGCTAATGCCATGTCGCAAACATGGTCTAACATGGGATCA
64 GATCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
*
59096578 CATATCGATGCCAATGCCATGCCCCAGACATGGTCTTACA
129 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACA
59096618 CAGGATCACA
Statistics
Matches: 451, Mismatches: 51, Indels: 24
0.86 0.10 0.05
Matches are distributed among these distances:
343 106 0.24
344 1 0.00
345 1 0.00
346 1 0.00
348 4 0.01
349 244 0.54
350 12 0.03
351 1 0.00
353 1 0.00
354 78 0.17
355 2 0.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (352 bp):
CCATGTCCCAGAAATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGA
TCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGTCATTACGATACCATGTCCCAGACA
TGGTCTTACACAAAATCATATATCGATGCCAACCATATCCCAAGACATATCGATGCCAATACCAT
TTCCCAAACATTGTCATACTTGGGAACACATATCAATGCCAATGCCATGTCCCAGACATGGTCTT
ACACAGGATCACAAATCAATGCCAATG
Found at i:59097051 original size:96 final size:96
Alignment explanation
Indices: 59096905--59097211 Score: 433
Period size: 96 Copynumber: 3.2 Consensus size: 96
59096895 CATTGCTATT
59096905 TCCCAGACATGGTTTTACATGGGATCACATATCAATGCCAATGACATGTCTCAAACATGGTCTTA
1 TCCCAGACATGGTTTTACATGGGATCACATATCAATGCCAATGACATGTCTCAAACATGGTCTTA
*
59096970 CATGGGATCACAAATCGATTCAAATCCCATC
66 CATGGGATCACAAATCGATTCAAATGCCATC
* *
59097001 TCCCAGACATGGTTTTATATGGGATCACATATCAATGCCAATGACATGTCTCAAACATGGTTTTA
1 TCCCAGACATGGTTTTACATGGGATCACATATCAATGCCAATGACATGTCTCAAACATGGTCTTA
59097066 CATGGGATCACAAATCGATTCAAATGCCATC
66 CATGGGATCACAAATCGATTCAAATGCCATC
* * * * **
59097097 TCCCAGACATGGTCTTT-CATGGGATCACATATCGATGCTAATGCCATATC-CTTGACATGGTCT
1 TCCCAGACATGGT-TTTACATGGGATCACATATCAATGCCAATGACATGTCTC-AAACATGGTCT
* * * *
59097160 TACAAGGGAT-A-ACATCGATTCCAATGCCATG
64 TACATGGGATCACAAATCGATTCAAATGCCATC
* *
59097191 TCCTAGACATGGTCTTACATG
1 TCCCAGACATGGTTTTACATG
59097212 TCATTACGTT
Statistics
Matches: 191, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
93 2 0.01
94 33 0.17
95 2 0.01
96 151 0.79
97 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (96 bp):
TCCCAGACATGGTTTTACATGGGATCACATATCAATGCCAATGACATGTCTCAAACATGGTCTTA
CATGGGATCACAAATCGATTCAAATGCCATC
Found at i:59097140 original size:48 final size:48
Alignment explanation
Indices: 59096883--59097211 Score: 308
Period size: 48 Copynumber: 6.9 Consensus size: 48
59096873 ATATCACAGA
* * *
59096883 ACATATCGATGCCATTGCTATTTCCCAGACATGGT-TTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTT-CATGGGATC
* * * * *
59096931 ACATATCAATGCCAATGACATGTCTCAAACATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTTCATGGGATC
* * * * * *
59096979 ACAAATCGATTCAAATCCCATCTCCCAGACATGGT-TTTATATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTT-CATGGGATC
* * * *
59097027 ACATATCAATGCCAATGACATGTCTCAAACATGGT-TTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTT-CATGGGATC
* * * *
59097075 ACAAATCGATTCAAATGCCATCTCCCAGACATGGTCTTTCATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTTCATGGGATC
* * ** * *
59097123 ACATATCGATGCTAATGCCATATCCTTGACATGGTCTTACAAGGGAT-
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTTCATGGGATC
* * * *
59097170 A-ACATCGATTCCAATGCCATGTCCTAGACATGGTCTTACATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTTCATG
59097212 TCATTACGTT
Statistics
Matches: 227, Mismatches: 51, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
46 35 0.15
47 3 0.01
48 184 0.81
49 5 0.02
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (48 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTTCATGGGATC
Found at i:59097169 original size:144 final size:144
Alignment explanation
Indices: 59096911--59097174 Score: 348
Period size: 144 Copynumber: 1.8 Consensus size: 144
59096901 TATTTCCCAG
* * * *
59096911 ACATGGTTTTACATGGGATCACATATCAATGCCAATGACATGTCTCAAACATGGTCTTACATGGG
1 ACATGGTTTTACATGGGATCACAAATCAATGCAAATGACATCTCCCAAACATGGTCTTACATGGG
* * * * * *
59096976 ATCACAAATCGATTCAAATCCCATCTCCCAGACATGGTTTTATATGGGATCACATATCAATGCCA
66 ATCACAAATCGATGCAAATCCCATATCCCAGACATGGTCTTACAAGGGATAACATATCAATGCCA
59097041 ATGACATGTCTCAA
131 ATGACATGTCTCAA
* * * * *
59097055 ACATGGTTTTACATGGGATCACAAATCGATTCAAATGCCATCTCCCAGACATGGTCTTTCATGGG
1 ACATGGTTTTACATGGGATCACAAATCAATGCAAATGACATCTCCCAAACATGGTCTTACATGGG
* * * **
59097120 ATCACATATCGATGCTAATGCCATATCCTTGACATGGTCTTACAAGGGATAACAT
66 ATCACAAATCGATGCAAATCCCATATCCCAGACATGGTCTTACAAGGGATAACAT
59097175 CGATTCCAAT
Statistics
Matches: 100, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
144 100 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (144 bp):
ACATGGTTTTACATGGGATCACAAATCAATGCAAATGACATCTCCCAAACATGGTCTTACATGGG
ATCACAAATCGATGCAAATCCCATATCCCAGACATGGTCTTACAAGGGATAACATATCAATGCCA
ATGACATGTCTCAA
Found at i:59097339 original size:48 final size:48
Alignment explanation
Indices: 59097285--59101280 Score: 1612
Period size: 48 Copynumber: 85.9 Consensus size: 48
59097275 ATCCTAGAGT
* * * * * *
59097285 ATATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGAACAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * *
59097333 ATATCGATGTCAATCCCATGTCCCAAACATGGTCTTACATGGAATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * * *
59097381 AAATCAATGCCAATTCCATGCCCCAAACACGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * *
59097429 AAATTGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGAATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * *
59097477 ATATTGATGCCAATGCCATGTCGCAGACATGGTCTAATATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * **
59097525 ATATCGATGCCAATGCCATGTCCCACATATGGTCTTACACAGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
*
59097573 ATAACGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TCGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGGATCAC
*
59097621 ATATCGATGTCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * **
59097669 ATATTGATGCCAATTCCATATCCCAGACATGGTCTTACAAAGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * ** *
59097717 ATTTCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * *
59097765 ATATCGATGCTAATGCCATATCTCAGA-A----C--ATAT-CGATGC-C
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT-CAC
* * * * *** ** * **
59097805 AT-TGCCATTTCCCA-GACATGGT--TTTACATGGGATCACATATAGATGC-C
1 ATAT-CGA-TGCCAATGCCAT-GTCCCAGACATGGTCTTACAT-GGGAT-CAC
* * * ** ** * *
59097853 A-ATGCCATATCTC-A-GACATGGT--CTTACATGGGATCACAAAT-CGATTCGA-
1 ATAT-CGAT-GC-CAATGCCAT-GTCCCAGACAT-GG-TCTTACATGGGA-TC-AC
* ** ** ** * * ***
59097902 ATGA-C-ATGTCCCA-GATATGGT--CTTACATGGGATCACAAAT-CGATGTT
1 AT-ATCGATG-CCAATGCCAT-GTCCCAGACAT-GG-TCTTACATGGGATCAC
* * * * ** * * *
59097949 A-ATGCCATATCC-TTGACATGGT--CTTACAAGGGCTAACAT---A----
1 ATAT-CGAT-GCCAATGCCAT-GTCCCAGACATGGTCTTACATGGGATCAC
* *
59097989 -TA--GATGCCAATGCCATGTCCCAGACATGGTCTTACACGAGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * *
59098034 ATATCGATGCTAATGCCATGTACTAGACATGGTCTTACACGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * * *
59098082 ATATTGATGCTAATGCCATGTCTCAAACATGGTCTTATATGGGAACAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * *
59098130 ATATCGATGCCAATGCCATGTCCCAAAAATGGTCTTACACGAGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
*
59098178 ATATCGATGCCAATGCCATGTCCCAGACATAGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* *
59098226 ATATCGATGCCAATGTCACGTCCCAGACATGGTCTTACAT--G--C-C
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * ** *
59098269 AT-T--A---CGATGCCATGTCCTAGACATGGTCTTACACGAAATCAT
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * * * ** *
59098311 ATATCGATGCCAATGTCATTTCCAAAACATTGTCATAGTTGGGAACAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* ** *
59098359 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAAACAGAATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * * *
59098407 ATATTGATGCAAAAGCCATGTCGCAGACATGGTCTAACATGAGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* **
59098455 ATATCGATGCCAATGCCATGCCCCAGACATGGTCTTACACAGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * *
59098503 ATAACAAAGCCAATGCAACGAA-GCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCAC
1 ATATC---G---ATGC--C-AATGCC-ATG---TC--CCAGACATGGTCTTACATGGGATCAC
* *
59098565 ATATCGATGCCAATGCCATGTCCCAGACATGGTCATATATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* *
59098613 ATATCGATGCCAATTCCATGTCCCAGACATGG-------T--G-TGAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
** *
59098651 A-AGGGATGCCAATGCCATGTCCTAGACATGGTCTTACAT--G-TCA-
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* ** *
59098694 ATA-C---G---ATGCCATGTCCCAGACATGGTCTTACACGAAATAAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * * * ** *
59098735 ATATCGATACTAATGCCATATCCCAAAACAT-ATC---GATGCCACTCCC
1 ATATCGATGCCAATGCCATGTCCC-AGACATGGTCTTACATGGGA-TCAC
* * *** * * *
59098781 AT-T---T-CCCA-GACATGGT--TTTACTTAGGATC--ACATATGGCTGC-C
1 ATATCGATGCCAATGCCAT-GTCCCAGACAT-GG-TCTTACAT-GGGAT-CAC
* * ** ** * *
59098823 A-ATGCCATGTCTC-A-GACATGGT--CTTACATGGGATCACAAAT-CGATTCGA-
1 ATAT-CGATG-C-CAATGCCAT-GTCCCAGACAT-GG-TCTTACATGGGA-TC-AC
* * * * **** ** * **
59098872 AT-GCCATGTCCTA-GACATGGT--TTTTCATGGGATCACATATCGATGCTA-
1 ATATCGATG-CCAATGCCAT-GTCCCAGACATGGTCTTACAT-GGGAT-C-AC
* * ** * * ** * ** *
59098920 AT-GCCATATCATTGACATGAT--CTTACAGGGGATAACAT---A----
1 ATATCGATGCCAATGCCATG-TCCCAGACATGGTCTTACATGGGATCAC
59098959 ---TCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT--G-T--C
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * ** *
59098999 AT-T--A---CGATGCCATGTCCCAGACATTGTCTTACACGAAATCAT
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * * * *
59099041 GTATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGAACAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * *
59099089 ATATAGATGCCAATGCCATGTCCTAGACATGGTCTTACACGAGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * ** * * *
59099137 AAATCAATGCCAATTTCATGCCCCAAACACGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * * *
59099185 AAATTGATGCCAATGCCATGTCCCAGACATGGTGTTACACGGAATAAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * *
59099233 ATATTGATGCCAATGCCATGTCGCAGACATGGTATAACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* ** *
59099281 ATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACAGGATAAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * *
59099329 ATAACGATGCCAATCCCATGTCCCAGACATGGTCTTATACGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
59099377 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
** *
59099425 ATATCGATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATCAC
1 ATATCGATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * ** *
59099473 ATAGCGATGCCAATGCCATGTCCCAGACATGGTCTTAAACAGAATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * * *
59099521 ATATTGATGCAAAAGCCATGTCGCAGACATGGTCTAACATGAGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* **
59099569 ATATCGATGCCAATGCCATGCCCCAGACATGGTCTTACACAGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * *
59099617 ATAACAAAGCCAATGCAACGAAGTCAATGCCATGTCCCAGACATGGTCTTACACGGGATCAC
1 ATATCGATGCCAATG---C-----C-ATG---TC--CCAGACATGGTCTTACATGGGATCAC
*
59099679 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * *
59099727 ATATCGATGCCAATTCCATGTCCCAGACATGGTGTTACA-AGG-----
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
*
59099769 -----GATGCCAATGCCATGTCCTAGACATGGTCTTACAT--G-TCA-
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
** *
59099808 ATA-C---G---ATGCCATGTCCCAGACATGGTCTTACATGAAATAAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * * * ** *
59099849 ATATCGATACTAATGCCATATCCCAAAACAT-ATC---GATGCCACTCCC
1 ATATCGATGCCAATGCCATGTCCC-AGACATGGTCTTACATGGGA-TCAC
* * *** * * *
59099895 AT-T---T-CCCA-GACATGGT--TTTACTTAGGATC--ACATATGGCTGC-C
1 ATATCGATGCCAATGCCAT-GTCCCAGACAT-GG-TCTTACAT-GGGAT-CAC
* * * * ** ** * *
59099937 A-ATGCCATGTC-TTAGACATGGT--CTTACATGGGATCACAAAT-CGATTCGA-
1 ATAT-CGATGCCAAT-GCCAT-GTCCCAGACAT-GG-TCTTACATGGGA-TC-AC
* * * * *** ** * **
59099986 AT-GCCATGTCCTA-GACATGGT--CTTTCATGGGATCACATATCGATGCTA-
1 ATATCGATG-CCAATGCCAT-GTCCCAGACATGGTCTTACAT-GGGAT-C-AC
* * ** * * ** * ** *
59100034 AT-GCCATATCATTGACATGAT--CTTACAGGGGATAACAT---A----
1 ATATCGATGCCAATGCCATG-TCCCAGACATGGTCTTACATGGGATCAC
*
59100073 ---TGGATGCCAATGCCATGTCCCAGACATGGTCTTACAT--G-T--C
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * ** *
59100113 AT-T--A---CGATGCCATGTCCCAGACATTGTCTTACACGAAATCAT
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * * * *
59100155 GTATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGAACAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
*
59100203 ATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * ** * *
59100251 AAATCAATGCCAATTTCATGCCCCAAACATGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * * *
59100299 AAATTGATGCCAATGCCATGTCCCAGACATGGTGTTACACGGAATCGC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* ** * *
59100347 ATATTGATGCCAATGCCATGTTGCAGACATGGTATAACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* **
59100395 ATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACAGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * *
59100443 ATAACGATGCCAATCCCATGTCCCAGACATGGTCTTACACGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
*
59100491 ATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
** *
59100539 ATATCGATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATCAC
1 ATATCGATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* ** * *
59100587 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATAAT
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * * * * **
59100635 ATATCAATGCTAATGCCATATCCCAAAACAT-ATC---GATGCCATTGC-C
1 ATATCGATGCCAATGCCATGTCCC-AGACATGGTCTTACATGGGA-T-CAC
* * ***** ** * **
59100681 AT-T---TCCCAA--ACATG-GATTTACATGGGATCACATATCGATTC-C
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGGA-TCAC
* * * ** *
59100723 A-ATGCCATGTCTC-A-GACATG-GCCTTACATGG---G-------ATCAC
1 ATAT-CGATG-C-CAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * *
59100760 AAATCGATTCGAATGCCATGTCCCAGATATGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * * ** * *
59100808 ATTTCGATGCTAATGCCATATCCTTGACATGGAT-TTACAGGGGATAAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGG-TCTTACATGGGATCAC
*
59100856 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * *
59100904 ATATCGATGCTAATGCCATGTACTAGACATGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * *
59100952 ATATCGATGCTAATGCCATGTCCCAGACATGGTCTTATATGGGAACAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* *
59101000 ATATCGATGCCATTGCCATGTCCCAGACATGGTCTTACACGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * *
59101048 ATATCGATGCTAATGCCATGTACTAGACATGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* * *
59101096 ATATCGATGCTAATGCCATGTCCCAGACATGGTCTTATATGGGAACAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
* *
59101144 ATATCGATGCCATTGCCATGTCCTAGACATGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
*
59101192 ATATCGATGCCAATGCCATGTCCGAGACA-GAGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATG-GTCTTACATGGGATCAC
* *
59101240 ATATCGATGCCAATGTCATGTCCCAAACATGGTCTTACATG
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG
59101281 TCATTACGAT
Statistics
Matches: 3072, Mismatches: 616, Indels: 520
0.73 0.15 0.12
Matches are distributed among these distances:
36 11 0.00
37 228 0.07
38 56 0.02
39 3 0.00
40 35 0.01
41 25 0.01
42 33 0.01
43 14 0.00
44 9 0.00
45 17 0.01
46 32 0.01
47 32 0.01
48 2424 0.79
49 36 0.01
50 12 0.00
51 3 0.00
53 8 0.00
54 9 0.00
56 9 0.00
57 8 0.00
59 2 0.00
62 66 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (48 bp):
ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
Found at i:59097448 original size:96 final size:96
Alignment explanation
Indices: 59097287--59101280 Score: 1853
Period size: 96 Copynumber: 42.9 Consensus size: 96
59097277 CCTAGAGTAT
* * * * * * * *
59097287 ATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGAACACATATCGATGTCAATCCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
*
59097352 GTCCCAAACATGGTCTTACATGGAATCACAA
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * * *
59097383 ATCAATGCCAATTCCATGCCCCAAACACGGTCTTACATGGGATCACAAATTGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
*
59097448 GTCCCAGACATGGTCTTACATGGAATCACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * * *
59097479 ATTGATGCCAATGCCATGTCGCAGACATGGTCTAATATGGGATCACATATCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * *
59097544 GTCCCACATATGGTCTTACACAGG-ATCACATA
66 GTCCCAGACATGGTCTTACA-TGGAATCACA-A
*
59097576 A-CGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TCGGGATCACATATCGATGTCAATGCCA
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGGATCACATATCGATGCCAATGCCA
* *
59097639 TGTCCCAGACATGGTCTTACATGGGATCACAT
65 TGTCCCAGACATGGTCTTACATGGAATCACAA
* * * ** *
59097671 ATTGATGCCAATTCCATATCCCAGACATGGTCTTACAAAGGATCACATTTCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * * * *
59097736 GTCCCAGACATGGCCTTACACGAAATAACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * * * * *
59097767 ATCGATGCTAATGCCATATCTCAGA-A----C--ATAT-CGATGC-CAT-TGCCATTTCCCA-GA
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT-CACATAT-CGA-TGCCAATGC
*** ** * **
59097821 CATGGT--TTTACATGGGATCACATATAGATGC-C-A
63 CAT-GTCCCAGACATGGTCTTACATGGA-AT-CACAA
* * * ** ** * *
59097854 ATGCCATATCTC-A-GACATGGT--CTTACATGGGATCACAAAT-CGATTCGA-ATGA-C-ATGT
1 AT-CGAT-GC-CAATGCCAT-GTCCCAGACAT-GG-TCTTACATGGGA-TC-ACAT-ATCGATG-
* ** ** ** * **
59097911 CCCA-GATATGGT--CTTACATGGGATCACA---AATCGATGTTA
56 CCAATGCCAT-GTCCCAGACATGGTCTTACATGGAATC-A--CAA
* * * * ** * * *
59097950 ATGCCATATCC-TTGACATGGT--CTTACAAGGGCTAACAT---A-----TA--GATGCCAATGC
1 AT-CGAT-GCCAATGCCAT-GTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGC
* *
59098002 CATGTCCCAGACATGGTCTTACA-CGAGATCACAT
63 CATGTCCCAGACATGGTCTTACATGGA-ATCACAA
* * * * * *
59098036 ATCGATGCTAATGCCATGTACTAGACATGGTCTTACACGGGATCACATATTGATGCTAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * * *
59098101 GTCTCAAACATGGTCTTATATGGGAA-CACAT
66 GTCCCAGACATGGTCTTACAT-GGAATCACAA
* * * *
59098132 ATCGATGCCAATGCCATGTCCCAAAAATGGTCTTACACGAGATCACATATCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * *
59098197 GTCCCAGACATAGTCTTACATGGGATCACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * *
59098228 ATCGATGCCAATGTCACGTCCCAGACATGGTCTTACAT--G--C-CAT-T--A---CGATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * * * *
59098282 GTCCTAGACATGGTCTTACACGAAATCATAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * * ** *
59098313 ATCGATGCCAATGTCATTTCCAAAACATTGTCATAGTTGGGAACACATATCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* ** *
59098378 GTCCCAGACATGGTCTTAAACAGAATCACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * *
59098409 ATTGATGCAAAAGCCATGTCGCAGACATGGTCTAACATGAGATCACATATCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* *
59098474 GCCCCAGACATGGTCTTACACAGGATCACATAACAAAGCCAA
66 GTCCCAGACATGGTCTTACA-TGG---A-AT--C--A--CAA
* * *
59098516 TGCAACGAAGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAATGC
1 ---ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGC
* * * *
59098581 CATGTCCCAGACATGGTCATATATGGGATCACAT
63 CATGTCCCAGACATGGTCTTACATGGAATCACAA
* * **
59098615 ATCGATGCCAATTCCATGTCCCAGACATGG-------T--G-TGACA-AGGGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
*
59098669 GTCCTAGACATGGTCTTACAT-G--T--C-A
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * ** * * *
59098694 AT--A---CGATGCCATGTCCCAGACATGGTCTTACACGAAATAACATATCGATACTAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * * * * * *
59098754 ATCCCAAAACAT-ATC---GATGCCACTC-C-C
66 GTCCC-AGACATGGTCTTACATG-GAATCACAA
* * * *** * * * *
59098781 AT---TTCCCA-GACATGGT--TTTACTTAGGATC--ACATATGGCTGC-CA-ATGCCATGTCTC
1 ATCGATGCCAATGCCAT-GTCCCAGACAT-GG-TCTTACAT-GGGAT-CACATAT-CGATG-C-C
* ** ** * *
59098836 -A-GACATGGT--CTTACATGGGATCACA---AAT--CGA
58 AATGCCAT-GTCCCAGACATGGTCTTACATGGAATCACAA
* * * * *
59098867 TTCGAATGCC-AT-----GTCCTAGACATGGTTTTTCATGGGATCACATATCGATGCTAATGCCA
1 ATCG-ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCA
* *** * * * * *
59098926 TATCATTGACATGATCTTACAGGGGATAACAT
65 TGTCCCAGACATGGTCTTACATGGAATCACAA
*
59098958 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT--G-T--CAT-T--A---CGATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * * ***
59099012 GTCCCAGACATTGTCTTACACGAAATCATGT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * * *
59099043 ATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGAACACATATAGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* *
59099108 GTCCTAGACATGGTCTTACA-CGAGATCACAA
66 GTCCCAGACATGGTCTTACATGGA-ATCACAA
* ** * * * * *
59099139 ATCAATGCCAATTTCATGCCCCAAACACGGTCTTACATGGGATCACAAATTGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * * *
59099204 GTCCCAGACATGGTGTTACACGGAATAACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * * *
59099235 ATTGATGCCAATGCCATGTCGCAGACATGGTATAACATGGGATCACATATCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * *
59099300 GTCCCAAACATGGTCTTACACAGG-ATAACATA
66 GTCCCAGACATGGTCTTACA-TGGAATCACA-A
* * *
59099332 A-CGATGCCAATCCCATGTCCCAGACATGGTCTTATACGGGATCACATATCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* *
59099396 GTCCCAGACATGGTCTTACATGGGATCACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
** * *
59099427 ATCGATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATCACATAGCGATGCCAATGCCA
1 ATCGATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCA
* ** *
59099491 TGTCCCAGACATGGTCTTAAACAGAATCACAT
65 TGTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * *
59099523 ATTGATGCAAAAGCCATGTCGCAGACATGGTCTAACATGAGATCACATATCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* *
59099588 GCCCCAGACATGGTCTTACACAGGATCACATAACAAAGCCAA
66 GTCCCAGACATGGTCTTACA-TGG---A-AT--C--A--CAA
* * * *
59099630 TGCAACGAAGTCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAATGC
1 ---ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGC
* * *
59099695 CATGTCCCAGACATGGTCTTATATGGGATCACAT
63 CATGTCCCAGACATGGTCTTACATGGAATCACAA
* * *
59099729 ATCGATGCCAATTCCATGTCCCAGACATGGTGTTACA-AGG----------GATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
*
59099783 GTCCTAGACATGGTCTTACAT-G--T--C-A
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* ** * * *
59099808 AT--A---CGATGCCATGTCCCAGACATGGTCTTACATGAAATAACATATCGATACTAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * * * * * *
59099868 ATCCCAAAACAT-ATC---GATGCCACTC-C-C
66 GTCCC-AGACATGGTCTTACATG-GAATCACAA
* * * *** * * * * * *
59099895 AT---TTCCCA-GACATGGT--TTTACTTAGGATC--ACATATGGCTGC-CA-ATGCCATGTC-T
1 ATCGATGCCAATGCCAT-GTCCCAGACAT-GG-TCTTACAT-GGGAT-CACATAT-CGATGCCAA
* ** ** * *
59099949 TAGACATGGT--CTTACATGGGATCACA---AAT--CGA
60 T-GCCAT-GTCCCAGACATGGTCTTACATGGAATCACAA
* * * *
59099981 TTCGAATGCC-AT-----GTCCTAGACATGGTCTTTCATGGGATCACATATCGATGCTAATGCCA
1 ATCG-ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCA
* *** * * * * *
59100040 TATCATTGACATGATCTTACAGGGGATAACAT
65 TGTCCCAGACATGGTCTTACATGGAATCACAA
* *
59100072 ATGGATGCCAATGCCATGTCCCAGACATGGTCTTACAT--G-T--CAT-T--A---CGATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * * ***
59100126 GTCCCAGACATTGTCTTACACGAAATCATGT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * * *
59100157 ATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGAACACATATAGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
*
59100222 GTCCCAGACATGGTCTTACATGGGATCACAA
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* ** * * * *
59100253 ATCAATGCCAATTTCATGCCCCAAACATGGTCTTACATGGGATCACAAATTGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * * *
59100318 GTCCCAGACATGGTGTTACACGGAATCGCAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* ** * *
59100349 ATTGATGCCAATGCCATGTTGCAGACATGGTATAACATGGGATCACATATCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* *
59100414 GTCCCAAACATGGTCTTACACAGG-ATCACATA
66 GTCCCAGACATGGTCTTACA-TGGAATCACA-A
* *
59100446 A-CGATGCCAATCCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * *
59100510 GTCCCAAACATGGTCTTACATGGGATCACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
** *
59100541 ATCGATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCCAATGCCA
1 ATCGATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCA
* * * * *
59100605 TGTCCCAGACATGGTCTTACACGAAATAATAT
65 TGTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * * ** * *
59100637 ATCAATGCTAATGCCATATCCCAAAACAT-ATC---GATGCCATTGC-CAT-T---TCCCAA--A
1 ATCGATGCCAATGCCATGTCCC-AGACATGGTCTTACATGGGA-T-CACATATCGATGCCAATGC
***** ** * * *
59100691 CATG-GATTTACATGGGATCACATATCGATTC-C-A
63 CATGTCCCAGACAT-GG-TCTTACATGGAATCACAA
* * * ** * * * *
59100724 ATGCCATGTCTC-A-GACATG-GCCTTACATGG-----G-----ATCACAAATCGATTCGAATGC
1 AT-CGATG-C-CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGC
* * *
59100776 CATGTCCCAGATATGGTCTTACATGGGATCACAT
63 CATGTCCCAGACATGGTCTTACATGGAATCACAA
* * * ** * *
59100810 TTCGATGCTAATGCCATATCCTTGACATGGAT-TTACAGGGGATAACATATCGATGCCAATGCCA
1 ATCGATGCCAATGCCATGTCCCAGACATGG-TCTTACATGGGATCACATATCGATGCCAATGCCA
* * *
59100874 TGTCCCAGACATGGTCTTACACGGGATCACAT
65 TGTCCCAGACATGGTCTTACATGGAATCACAA
* * * *
59100906 ATCGATGCTAATGCCATGTACTAGACATGGTCTTACATGGGATCACATATCGATGCTAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* *
59100971 GTCCCAGACATGGTCTTATATGGGAA-CACAT
66 GTCCCAGACATGGTCTTACAT-GGAATCACAA
* * *
59101002 ATCGATGCCATTGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCTAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * * *
59101067 GTACTAGACATGGTCTTACATGGGATCACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * * *
59101098 ATCGATGCTAATGCCATGTCCCAGACATGGTCTTATATGGGAACACATATCGATGCCATTGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
* * *
59101163 GTCCTAGACATGGTCTTACATGGGATCACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* *
59101194 ATCGATGCCAATGCCATGTCCGAGACA-GAGTCTTACATGGGATCACATATCGATGCCAATGTCA
1 ATCGATGCCAATGCCATGTCCCAGACATG-GTCTTACATGGGATCACATATCGATGCCAATGCCA
*
59101258 TGTCCCAAACATGGTCTTACATG
65 TGTCCCAGACATGGTCTTACATG
59101281 TCATTACGAT
Statistics
Matches: 2969, Mismatches: 640, Indels: 578
0.71 0.15 0.14
Matches are distributed among these distances:
74 46 0.02
77 2 0.00
78 1 0.00
79 7 0.00
80 4 0.00
82 6 0.00
83 4 0.00
84 37 0.01
85 344 0.12
86 109 0.04
87 54 0.02
88 74 0.02
89 47 0.02
90 35 0.01
91 25 0.01
92 4 0.00
93 10 0.00
94 14 0.00
95 32 0.01
96 1904 0.64
97 32 0.01
98 2 0.00
99 4 0.00
100 2 0.00
101 6 0.00
103 4 0.00
105 6 0.00
107 4 0.00
109 4 0.00
110 146 0.05
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (96 bp):
ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCAT
GTCCCAGACATGGTCTTACATGGAATCACAA
Found at i:59097820 original size:29 final size:29
Alignment explanation
Indices: 59097762--59097820 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
59097752 TACACGAAAT
* *
59097762 AACATATCGATGCTAATGCCATATCTCAG
1 AACATATCGATGCCAATGCCATATCCCAG
* *
59097791 AACATATCGATGCCATTGCCATTTCCCAG
1 AACATATCGATGCCAATGCCATATCCCAG
59097820 A
1 A
59097821 CATGGTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (29 bp):
AACATATCGATGCCAATGCCATATCCCAG
Found at i:59097851 original size:77 final size:77
Alignment explanation
Indices: 59097715--59097868 Score: 209
Period size: 77 Copynumber: 2.0 Consensus size: 77
59097705 ACAAAGGATC
* * *
59097715 ACATTTCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACATATCGATGCTAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACATATAGATGCCAATG
59097780 CCATATCTCAGA
66 CCATATCTCAGA
* * ** * ** *
59097792 ACATATCGATGCCATTGCCATTTCCCAGACATGGTTTTACATGGGATCACATATAGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACATATAGATGCCAATG
59097857 CCATATCTCAGA
66 CCATATCTCAGA
59097869 CATGGTCTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
77 66 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (77 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACATATAGATGCCAATG
CCATATCTCAGA
Found at i:59097912 original size:173 final size:173
Alignment explanation
Indices: 59097619--59097959 Score: 484
Period size: 173 Copynumber: 2.0 Consensus size: 173
59097609 ACTCGGGATC
* * *
59097619 ACATATCGATGTCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATTGATGCCAATT
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATAGATGCCAATG
** *
59097684 CCATATCCCAGACATGGTCTTACAAAGGATCACATTTCGATGCCAATGCCATGTCCCAGACATGG
66 CCATATCCCAGACATGGTCTTACAAAGGATCACAAATCGATGCCAATGACATGTCCCAGACATGG
*
59097749 CCTTACACGAAATAACATATCGATGCTAATGCCATATCTCAGA
131 CCTTACACGAAATAACAAATCGATGCTAATGCCATATCTCAGA
* * *
59097792 ACATATCGATGCCATTGCCATTTCCCAGACATGGTTTTACATGGGATCACATATAGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATAGATGCCAATG
* ** * * *
59097857 CCATATCTCAGACATGGTCTTACATGGGATCACAAATCGATTCGAATGACATGTCCCAGATATGG
66 CCATATCCCAGACATGGTCTTACAAAGGATCACAAATCGATGCCAATGACATGTCCCAGACATGG
* * ** * *
59097922 TCTTACATGGGATCACAAATCGATGTTAATGCCATATC
131 CCTTACACGAAATAACAAATCGATGCTAATGCCATATC
59097960 CTTGACATGG
Statistics
Matches: 146, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
173 146 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (173 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATAGATGCCAATG
CCATATCCCAGACATGGTCTTACAAAGGATCACAAATCGATGCCAATGACATGTCCCAGACATGG
CCTTACACGAAATAACAAATCGATGCTAATGCCATATCTCAGA
Found at i:59097969 original size:221 final size:221
Alignment explanation
Indices: 59097571--59098473 Score: 628
Period size: 221 Copynumber: 4.0 Consensus size: 221
59097561 ACACAGGATC
* *
59097571 ACATAACGATGCCAATGCCATGTCCCAGACATGGTCTTACTCGGGATCACATATCGATGTCAATG
1 ACATAACGATGCCAATGCCATGTCCCAGACATGGTCTTACTCGGGATCACATATAGATGCCAATG
* * * **
59097636 CCATGTCCCAGACATGGTCTTACATGGGATCACATATTGATGCCAATTCCATATCCCAGACATGG
66 CCATATCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGACATATCCCAGACATGG
** * *
59097701 TCTTACAAAGGATCACATTTCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACA
131 TCTTACAAAGGATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTACAAGAAATAACA
* *
59097766 TATCGATGCTAATGCCATATCTCAGA
196 TATAGATGCCAATGCCATATCTCAGA
* * * *
59097792 ACATATCGATGCCATTGCCATTTCCCAGACATGGTTTTACAT-GGGATCACATATAGATGCCAAT
1 ACATAACGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TCGGGATCACATATAGATGCCAAT
* * * * *
59097856 GCCATATCTCAGACATGGTCTTACATGGGATCACAAATCGATTCGAATGACATGTCCCAGATATG
65 GCCATATCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGACATATCCCAGACATG
** ** ** * ***
59097921 GTCTTACATGGGATCACAAATCGATGTTAATGCCATATCCTTGACATGGTCTTACAAGGGCTAAC
130 GTCTTACAAAGGATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTACAAGAAATAAC
59097986 ATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAGA
195 ATATAGATGCCAATGCCA--T-------A---TC-T---C-AGA
* * * * * * *
59098030 TCACATATCGATGCTAATGCCATGTACTAGACATGGTCTTACACGGGATCACATATTGATGCTAA
1 --ACATAACGATGCCAATGCCATGTCCCAGACATGGTCTTACTCGGGATCACATATAGATGCCAA
* * * * * * * * * *
59098095 TGCCATGTCTCAAACATGGTCTTATATGGGAACACATATCGATGCCAATGCCATGTCCCAAAAAT
64 TGCCATATCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGACATATCCCAGACAT
* * * * * * ** *
59098160 GGTCTTAC-ACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTACATGGGATC
129 GGTCTTACAAAG-GATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTACAAGAAATA
* * ** *
59098224 ACATATCGATGCCAATGTCACGTCCCAG-
193 ACATATAGATGCCAATGCCATATCTCAGA
* * * ** * *
59098252 ACATGGTCTTAC-ATGCCATTACGATGCCATGTCCTAGACATGGTCTTACACGAAATCATATATC
1 ACA-----TAACGATGCC---A--ATGCCATGTCCCAGACATGGTCTTACTCGGGATCACATATA
* * * * * * ** * * * *
59098316 GATGCCAATGTCATTTCCAAAACATTGTCATAGTTGGGAACACATATCGATGCCAATGCCATGTC
56 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGACATATC
* * * * * * * * *
59098381 CCAGACATGGTCTTA-AACAGAATCACATATTGATGCAAAAGCCATGTCGCAGACATGGTCTAAC
121 CCAGACATGGTCTTACAA-AGGATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTAC
* * * *
59098445 ATGAGATCACATATCGATGCCAATGCCAT
185 AAGAAATAACATATAGATGCCAATGCCAT
59098474 GCCCCAGACA
Statistics
Matches: 550, Mismatches: 98, Indels: 60
0.78 0.14 0.08
Matches are distributed among these distances:
220 3 0.01
221 178 0.32
222 1 0.00
223 3 0.01
224 5 0.01
225 2 0.00
227 1 0.00
228 2 0.00
229 169 0.31
230 2 0.00
233 2 0.00
234 1 0.00
237 1 0.00
238 3 0.01
239 1 0.00
240 176 0.32
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (221 bp):
ACATAACGATGCCAATGCCATGTCCCAGACATGGTCTTACTCGGGATCACATATAGATGCCAATG
CCATATCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGACATATCCCAGACATGG
TCTTACAAAGGATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTACAAGAAATAACA
TATAGATGCCAATGCCATATCTCAGA
Found at i:59098066 original size:144 final size:144
Alignment explanation
Indices: 59097792--59101280 Score: 1901
Period size: 144 Copynumber: 25.0 Consensus size: 144
59097782 ATATCTCAGA
* * * * *
59097792 ACATATCGATGCCATTGCCATTTCCCAGACATGGTTTTACATGGGATCACATATAGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * * * * * * * *
59097857 CCATATCTCAGACATGGTCTTACATGGGATCACAAATCGATTCGAATGACATGTCCCAGATATGG
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
59097922 TCTTACATGGGATC
131 TCTTACATGGGATC
* ** * ** *
59097936 ACAAATCGATGTTAATGCCATATCCTTGACATGGTCTTACAAGGGCTAACATATAGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * *
59098001 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCTAATGCCATGTACTAGACATGG
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
*
59098066 TCTTACACGGGATC
131 TCTTACATGGGATC
* * * * * * *
59098080 ACATATTGATGCTAATGCCATGTCTCAAACATGGTCTTATATGGGA-ACACATATCGATGCCAAT
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATA-ACATATAGATGCCAAT
* * *
59098144 GCCATGTCCCAAAAATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATA
65 GCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATG
59098209 GTCTTACATGGGATC
130 GTCTTACATGGGATC
* * ** *
59098224 ACATATCGATGCCAATGTCACGTCCCAGACATGGTCTTAC-----ATGCCAT-T--A---CGATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * * * * * * *
59098278 CCATGTCCTAGACATGGTCTTACACGAAATCATATATCGATGCCAATGTCATTTCCAAAACATTG
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
* ** *
59098343 TCATAGTTGGGAAC
131 TCTTACATGGGATC
* * * * * *
59098357 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTA-AACAGAATCACATATTGATGCAAAA
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAA-GGGATAACATATAGATGCCAAT
* * * *
59098421 GCCATGTCGCAGACATGGTCTAACATGAGATCACATATCGATGCCAATGCCATGCCCCAGACATG
65 GCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATG
**
59098486 GTCTTACACAGGATC
130 GTCTTACATGGGATC
* * *
59098501 ACATAACAAAGCCAATGCAACGAAGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACA
1 ACAT----------AT----CGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACA
* * * * * *
59098566 TATCGATGCCAATGCCATGTCCCAGACATGGTCATATATGGGATCACATATCGATGCCAATTCCA
52 TATAGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCA
*
59098631 TGTCCCAGACATGG-------T--G-TG
117 TGTCCCAGACATGGTCTTACATGGGATC
** * * *
59098649 ACA-AGGGATGCCAATGCCATGTCCTAGACATGGTCTTAC-A-TG-T--CA-AT--A---CGATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * * * * *
59098702 CCATGTCCCAGACATGGTCTTACACGAAATAACATATCGATACTAATGCCATATCCCAAAACAT-
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCC-AGACATG
* * **
59098766 ATC---GATGCCACTC
130 GTCTTACATGGGA-TC
* * * *** * * * **
59098779 CCAT-T---T-CCCA-GACATGGT--TTTACTTAGGATC--ACATATGGCTGCCA-AT-GCCATG
1 ACATATCGATGCCAATGCCAT-GTCCCAGACAT-GG-TCTTACA-AGGGATAACATATAG--ATG
* ** ** * *
59098832 TCTC-A-GACATGGT--CTTACATGG-GAT-CAC-AAATC-GAT-TCGAATGCC------ATGTC
60 -C-CAATGCCAT-GTCCCAGACATGGTCTTACACGAGATCACATATCG-ATGCCAATGCCATGTC
* * *
59098882 CTAGACATGGTTTTTCATGGGATC
121 CCAGACATGGTCTTACATGGGATC
* * *** * * *
59098906 ACATATCGATGCTAATGCCATATCATTGACATGATCTTACAGGGGATAACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * *
59098971 CCATGTCCCAGACATGGTCTTACA--TG-T--CAT-T--A---CGATGCCATGTCCCAGACATTG
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
* **
59099025 TCTTACACGAAATC
131 TCTTACATGGGATC
** * * * * **
59099039 ATGTATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGA-ACACATATAGATGCCAAT
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATA-ACATATAGATGCCAAT
* * * ** * * *
59099103 GCCATGTCCTAGACATGGTCTTACACGAGATCACAAATCAATGCCAATTTCATGCCCCAAACACG
65 GCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATG
59099168 GTCTTACATGGGATC
130 GTCTTACATGGGATC
* * * * * *
59099183 ACAAATTGATGCCAATGCCATGTCCCAGACATGGTGTTACACGGAATAACATATTGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * * * * *
59099248 CCATGTCGCAGACATGGTATAACATGGGATCACATATCGATGCCAATGCCATGTCCCAAACATGG
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
** *
59099313 TCTTACACAGGATA
131 TCTTACATGGGATC
* * * * * *
59099327 ACATAACGATGCCAATCCCATGTCCCAGACATGGTCTTATACGGGATCACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * *
59099392 CCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAAAT-CCATGTCCCAGACATT
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCC-AATGCCATGTCCCAGACATG
* *
59099456 TTCTTACAAGGGATC
130 GTCTTACATGGGATC
* * * * * * *
59099471 ACATAGCGATGCCAATGCCATGTCCCAGACATGGTCTTA-AACAGAATCACATATTGATGCAAAA
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAA-GGGATAACATATAGATGCCAAT
* * * *
59099535 GCCATGTCGCAGACATGGTCTAACATGAGATCACATATCGATGCCAATGCCATGCCCCAGACATG
65 GCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATG
**
59099600 GTCTTACACAGGATC
130 GTCTTACATGGGATC
* * *
59099615 ACATAACAAAGCCAATGCAACGAAGTCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACA
1 ACATATC---G---ATG---C-----CAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACA
* * * * *
59099680 TATCGATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACATATCGATGCCAATTCCA
52 TATAGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCA
* *
59099745 TGTCCCAGACATGGTGTTACA-AGG---
117 TGTCCCAGACATGGTCTTACATGGGATC
* * *
59099769 -------GATGCCAATGCCATGTCCTAGACATGGTCTTAC-A-TG-T--CA-AT--A---CGATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * * * * * *
59099816 CCATGTCCCAGACATGGTCTTACATGAAATAACATATCGATACTAATGCCATATCCCAAAACAT-
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCC-AGACATG
* * **
59099880 ATC---GATGCCACTC
130 GTCTTACATGGGA-TC
* * * *** * * * **
59099893 CCAT-T---T-CCCA-GACATGGT--TTTACTTAGGATC--ACATATGGCTGCCA-AT-GCCATG
1 ACATATCGATGCCAATGCCAT-GTCCCAGACAT-GG-TCTTACA-AGGGATAACATATAG--ATG
* * * ** ** * *
59099946 TC-TTAGACATGGT--CTTACATGG-GAT-CAC-AAATC-GAT-TCGAATGCC------ATGTCC
60 CCAAT-GCCAT-GTCCCAGACATGGTCTTACACGAGATCACATATCG-ATGCCAATGCCATGTCC
* *
59099997 TAGACATGGTCTTTCATGGGATC
122 CAGACATGGTCTTACATGGGATC
* * *** * * *
59100020 ACATATCGATGCTAATGCCATATCATTGACATGATCTTACAGGGGATAACATATGGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * *
59100085 CCATGTCCCAGACATGGTCTTACA--TG-T--CAT-T--A---CGATGCCATGTCCCAGACATTG
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
* **
59100139 TCTTACACGAAATC
131 TCTTACATGGGATC
** * * * * **
59100153 ATGTATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGA-ACACATATAGATGCCAAT
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATA-ACATATAGATGCCAAT
* * * * ** * *
59100217 GCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCAATGCCAATTTCATGCCCCAAACATG
65 GCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATG
59100282 GTCTTACATGGGATC
130 GTCTTACATGGGATC
* * * * * ** *
59100297 ACAAATTGATGCCAATGCCATGTCCCAGACATGGTGTTACACGGAATCGCATATTGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
** * * * * *
59100362 CCATGTTGCAGACATGGTATAACATGGGATCACATATCGATGCCAATGCCATGTCCCAAACATGG
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
**
59100427 TCTTACACAGGATC
131 TCTTACATGGGATC
* * * * *
59100441 ACATAACGATGCCAATCCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * * *
59100506 CCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAAAT-CCATGTCCCAGACATT
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCC-AATGCCATGTCCCAGACATG
* *
59100570 TTCTTACAAGGGATC
130 GTCTTACATGGGATC
* ** * *
59100585 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATAATATATCA-ATGCTAAT
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATAT-AGATGCCAAT
* * * * * * * * *****
59100649 GCCATATCCCAAAACAT-ATCGATGC-C-A-TTGC-CAT-T---TCCCAA--ACATG-GATTTAC
65 GCCATGTCCC-AGACATGGTC-TTACACGAGAT-CACATATCGATGCCAATGCCATGTCCCAGAC
** * **
59100702 ATGGGATCACATATCGATTC
127 ATGGTCTTACAT-GGGA-TC
* * * ** * * * * *
59100722 -CA-ATGCCATGTCTC-A-GACATG-GCCTTACATGG----------GATCACAAATCGATTCGA
1 ACATAT-CGATG-C-CAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCA
* * * * * * **
59100772 ATGCCATGTCCCAGATATGGTCTTACATGGGATCACATTTCGATGCTAATGCCATATCCTTGACA
63 ATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACA
* *
59100837 TGGAT-TTACAGGGGATA
128 TGG-TCTTACATGGGATC
* * * *
59100854 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCTAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * * * *
59100919 CCATGTACTAGACATGGTCTTACATGGGATCACATATCGATGCTAATGCCATGTCCCAGACATGG
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
* *
59100984 TCTTATATGGGAAC
131 TCTTACATGGGATC
* * * * *
59100998 ACATATCGATGCCATTGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCTAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * * * *
59101063 CCATGTACTAGACATGGTCTTACATGGGATCACATATCGATGCTAATGCCATGTCCCAGACATGG
66 CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
* *
59101128 TCTTATATGGGAAC
131 TCTTACATGGGATC
* * * * *
59101142 ACATATCGATGCCATTGCCATGTCCTAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
* * * * *
59101207 CCATGTCCGAGACA-GAGTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCCAAACATG
66 CCATGTCCCAGACATG-GTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATG
59101271 GTCTTACATG
130 GTCTTACATG
59101281 TCATTACGAT
Statistics
Matches: 2600, Mismatches: 518, Indels: 454
0.73 0.15 0.13
Matches are distributed among these distances:
119 1 0.00
122 105 0.04
123 10 0.00
124 28 0.01
125 50 0.02
126 18 0.01
127 24 0.01
128 17 0.01
130 21 0.01
131 20 0.01
132 29 0.01
133 418 0.16
134 61 0.02
135 39 0.01
136 33 0.01
137 12 0.00
138 16 0.01
139 7 0.00
141 7 0.00
142 4 0.00
143 8 0.00
144 1422 0.55
145 15 0.01
147 1 0.00
148 4 0.00
149 1 0.00
150 3 0.00
153 1 0.00
154 2 0.00
157 3 0.00
158 218 0.08
159 2 0.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (144 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAGGGATAACATATAGATGCCAATG
CCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
TCTTACATGGGATC
Found at i:59098315 original size:133 final size:133
Alignment explanation
Indices: 59098142--59098395 Score: 364
Period size: 133 Copynumber: 1.9 Consensus size: 133
59098132 ATCGATGCCA
* * *
59098142 ATGCCATGTCCCAAAAATGGTCTTACACGAGATCACATATCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAAAAATGGTCTTACACGAAATCACATATCGATGCCAATGCCATGTCCAAAACA
* * *
59098207 TAGTCTTACATGGGATCACATATCGATGCCAATGTCACGTCCCAGACATGGTCTTACATGCCATT
66 TAGTCATACATGGGAACACATATCGATGCCAATGCCACGTCCCAGACATGGTCTTACATGCCATT
59098272 ACG
131 ACG
* * * * * *
59098275 ATGCCATGTCCTAGACATGGTCTTACACGAAATCATATATCGATGCCAATGTCATTTCCAAAACA
1 ATGCCATGTCCCAAAAATGGTCTTACACGAAATCACATATCGATGCCAATGCCATGTCCAAAACA
* ** *
59098340 TTGTCATAGTTGGGAACACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTA
66 TAGTCATACATGGGAACACATATCGATGCCAATGCCACGTCCCAGACATGGTCTTA
59098396 AACAGAATCA
Statistics
Matches: 105, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
133 105 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (133 bp):
ATGCCATGTCCCAAAAATGGTCTTACACGAAATCACATATCGATGCCAATGCCATGTCCAAAACA
TAGTCATACATGGGAACACATATCGATGCCAATGCCACGTCCCAGACATGGTCTTACATGCCATT
ACG
Found at i:59098782 original size:29 final size:29
Alignment explanation
Indices: 59098732--59098788 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
59098722 TACACGAAAT
* *
59098732 AACATATCGATACTAATGCCATATCCCAA
1 AACATATCGATACCAATCCCATATCCCAA
* * *
59098761 AACATATCGATGCCACTCCCATTTCCCA
1 AACATATCGATACCAATCCCATATCCCA
59098789 GACATGGTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.35, C:0.33, G:0.07, T:0.25
Consensus pattern (29 bp):
AACATATCGATACCAATCCCATATCCCAA
Found at i:59099783 original size:37 final size:38
Alignment explanation
Indices: 59099730--59099839 Score: 134
Period size: 37 Copynumber: 2.9 Consensus size: 38
59099720 GGATCACATA
* *
59099730 TCGATGCCAATTCCATGTCCCAGACATGGTGTTACAAG
1 TCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAG
* * *
59099768 -GGATGCCAATGCCATGTCCTAGACATGGTCTTACATG
1 TCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAG
* * *
59099805 TCAAT-ACGATGCCATGTCCCAGACATGGTCTTACA
1 TCGATGCCAATGCCATGTCCCAGACATGGTCTTACA
59099840 TGAAATAACA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
37 59 0.97
38 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (38 bp):
TCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAG
Found at i:59099896 original size:29 final size:29
Alignment explanation
Indices: 59099846--59099902 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
59099836 TACATGAAAT
* *
59099846 AACATATCGATACTAATGCCATATCCCAA
1 AACATATCGATACCAATCCCATATCCCAA
* * *
59099875 AACATATCGATGCCACTCCCATTTCCCA
1 AACATATCGATACCAATCCCATATCCCA
59099903 GACATGGTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.35, C:0.33, G:0.07, T:0.25
Consensus pattern (29 bp):
AACATATCGATACCAATCCCATATCCCAA
Found at i:59100716 original size:77 final size:77
Alignment explanation
Indices: 59100585--59100730 Score: 177
Period size: 77 Copynumber: 1.9 Consensus size: 77
59100575 ACAAGGGATC
* * *
59100585 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATAATATATCAATGCTAATG
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGAAATAACATATCAATGCCAATG
59100650 CCATATCCCAAA
66 CCATATCCCAAA
* * * ** * * *
59100662 ACATATCGATGCCATTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATTCCAAT
1 ACATATCGATGCCAATGCCATGTCCCAAACATGG-TCTTACACGAAATAACATATCAATGCCAAT
59100726 GCCAT
65 GCCAT
59100731 GTCTCAGACA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
77 56 0.98
78 1 0.02
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.27
Consensus pattern (77 bp):
ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGAAATAACATATCAATGCCAATG
CCATATCCCAAA
Found at i:59100778 original size:173 final size:173
Alignment explanation
Indices: 59100489--59100830 Score: 481
Period size: 173 Copynumber: 2.0 Consensus size: 173
59100479 ACACGGGATC
59100489 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAAAT
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAAAT
*** *
59100554 CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
66 CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCCATGTCCCAGACATGG
*
59100619 TCTTACACGAAATAATATATCAATGCTAATGCCATATCCCAAA
131 TCTTACACGAAATAACATATCAATGCTAATGCCATATCCCAAA
* * *
59100662 ACATATCGATGCCATTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATTCC-AA
1 ACATATCGATGCCAATGCCATGTCCCAAACATGG-TCTTACATGGGATCACATATCGATGCCAAA
* * * * *
59100725 TGCCATGTCTCAGACATGGCCTTACATGGGATCACAAATCGATTCGAATGCCATGTCCCAGATAT
65 T-CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCCATGTCCCAGACAT
* ** * * *
59100790 GGTCTTACATGGGATCACATTTCGATGCTAATGCCATATCC
129 GGTCTTACACGAAATAACATATCAATGCTAATGCCATATCC
59100831 TTGACATGGA
Statistics
Matches: 148, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
172 3 0.02
173 144 0.97
174 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (173 bp):
ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAAAT
CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCCATGTCCCAGACATGG
TCTTACACGAAATAACATATCAATGCTAATGCCATATCCCAAA
Found at i:59102925 original size:10 final size:10
Alignment explanation
Indices: 59102912--59102945 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
59102902 AATCAAATAT
59102912 CAATATAAGC
1 CAATATAAGC
59102922 CAATATAAGC
1 CAATATAAGC
59102932 CAATATAAGC
1 CAATATAAGC
59102942 CAAT
1 CAAT
59102946 TTATATGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.50, C:0.21, G:0.09, T:0.21
Consensus pattern (10 bp):
CAATATAAGC
Found at i:59104494 original size:18 final size:19
Alignment explanation
Indices: 59104461--59104496 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
59104451 TTAAATTTAG
*
59104461 TAAATTAATTGAATTATGT
1 TAAATTAAATGAATTATGT
59104480 TAAATTAAATG-ATTATG
1 TAAATTAAATGAATTATG
59104497 GTGCCAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (19 bp):
TAAATTAAATGAATTATGT
Found at i:59110601 original size:40 final size:40
Alignment explanation
Indices: 59110556--59110780 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
59110546 CTTGCGCAAG
* * *
59110556 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
59110596 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
59110636 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* **
59110676 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCATGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
59110716 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
59110757 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
59110781 CATTCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 128 0.82
41 28 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:59117425 original size:40 final size:40
Alignment explanation
Indices: 59117379--59117602 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
59117369 CTTGCGCAAG
* * *
59117379 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
59117419 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
59117459 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
59117499 GCCTTCGGGTCTTAGCCC-GATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
59117538 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
59117579 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
59117603 CATTCGAATA
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 31 0.20
40 96 0.61
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:59117474 original size:80 final size:80
Alignment explanation
Indices: 59117343--59117602 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
59117333 CTCAAGTAAT
* * * * * * * *
59117343 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
59117406 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
59117421 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
59117485 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
59117501 CTTCGGGTCTTAGCCC-GATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
59117565 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
59117581 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
59117603 CATTCGAATA
Statistics
Matches: 152, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
78 13 0.09
79 53 0.35
80 81 0.53
81 5 0.03
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:59126829 original size:31 final size:31
Alignment explanation
Indices: 59126788--59126851 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
59126778 CCTTTTCATA
*
59126788 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
59126819 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
59126850 TT
1 TT
59126852 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:59127097 original size:24 final size:24
Alignment explanation
Indices: 59127045--59127210 Score: 230
Period size: 24 Copynumber: 7.0 Consensus size: 24
59127035 GCTTTATCAT
*
59127045 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
59127070 ATAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
59127094 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
59127117 ATAACTGGGGCGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
59127141 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
59127165 ATAACTGGGGCATAAG-CCGTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
59127188 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
59127211 TCACTTCCTC
Statistics
Matches: 127, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
23 42 0.33
24 73 0.57
25 12 0.09
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:59127121 original size:47 final size:48
Alignment explanation
Indices: 59127044--59127210 Score: 232
Period size: 47 Copynumber: 3.5 Consensus size: 48
59127034 TGCTTTATCA
* *
59127044 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
*
59127093 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* * *
59127140 GATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG-CCGTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
59127187 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
59127211 TCACTTCCTC
Statistics
Matches: 108, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
47 72 0.67
48 23 0.21
49 13 0.12
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:59127145 original size:71 final size:71
Alignment explanation
Indices: 59127045--59127210 Score: 253
Period size: 71 Copynumber: 2.3 Consensus size: 71
59127035 GCTTTATCAT
* *
59127045 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAA
59127109 GCCCTTTA
64 GCCCTTTA
* * *
59127117 ATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
*
59127182 CGTTTA
66 CCTTTA
59127188 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
59127211 TCACTTCCTC
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
71 75 0.86
72 12 0.14
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGC
CCTTTA
Found at i:59127285 original size:20 final size:20
Alignment explanation
Indices: 59127260--59127326 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
59127250 TTATGAATAC
59127260 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
59127280 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
59127300 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
59127320 ACCATGT
1 ATCATGT
59127327 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:59127291 original size:11 final size:11
Alignment explanation
Indices: 59127260--59127315 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
59127250 TTATGAATAC
59127260 ATCATGTGCAT
1 ATCATGTGCAT
*
59127271 ATCA--TACAT
1 ATCATGTGCAT
59127280 ATCATGTGCAT
1 ATCATGTGCAT
*
59127291 ATCA--TACAT
1 ATCATGTGCAT
*
59127300 GTCATGTGCAT
1 ATCATGTGCAT
59127311 ATCAT
1 ATCAT
59127316 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:59127395 original size:25 final size:25
Alignment explanation
Indices: 59127363--59127410 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
59127353 ATACTTAAAC
* * *
59127363 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
59127388 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
59127411 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:59133717 original size:31 final size:31
Alignment explanation
Indices: 59133676--59133739 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
59133666 CCTTTTCATA
* *
59133676 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
**
59133707 TTTCAAATTTCATATTACTAGGCCGAAGCCT
1 TTTCAAATTTCATAACACTAGGCCGAAGCCT
59133738 TT
1 TT
59133740 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTAGGCCGAAGCCT
Found at i:59134009 original size:47 final size:46
Alignment explanation
Indices: 59133954--59134096 Score: 189
Period size: 47 Copynumber: 3.1 Consensus size: 46
59133944 CCTTGCCTCT
*
59133954 TTTAATAACTGGGGCAAAAGCCCTTCTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTT-TTATAACTGGGGCATAAGCCC
** *
59134001 TTTAATAACTGGGGTGTAAGCCCTTTTGATAAC-AGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTT-ATAACTGGGGCATAAGCCC
* * *
59134047 TTTTGATAACTAGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCC
59134094 TTT
1 TTT
59134097 TTCACTTCCT
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
46 22 0.27
47 61 0.73
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (46 bp):
TTTAATAACTGGGGCATAAGCCCTTTTATAACTGGGGCATAAGCCC
Done.