Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 184 of 325
Found at i:59763189 original size:8 final size:8
Alignment explanation
Indices: 59763175--59763219 Score: 81
Period size: 8 Copynumber: 5.6 Consensus size: 8
59763165 AATATTAAAA
59763175 TTTTAAGT
1 TTTTAAGT
*
59763183 TTGTAAGT
1 TTTTAAGT
59763191 TTTTAAGT
1 TTTTAAGT
59763199 TTTTAAGT
1 TTTTAAGT
59763207 TTTTAAGT
1 TTTTAAGT
59763215 TTTTA
1 TTTTA
59763220 TTTTTCAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.62
Consensus pattern (8 bp):
TTTTAAGT
Found at i:59763196 original size:24 final size:24
Alignment explanation
Indices: 59763169--59763219 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
59763159 ATATTAAATA
59763169 TTAAAATTTTAAGTTTGTAAGTTT
1 TTAAAATTTTAAGTTTGTAAGTTT
** *
59763193 TTAAGTTTTTAAGTTTTTAAGTTT
1 TTAAAATTTTAAGTTTGTAAGTTT
59763217 TTA
1 TTA
59763220 TTTTTCAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (24 bp):
TTAAAATTTTAAGTTTGTAAGTTT
Found at i:59763231 original size:14 final size:14
Alignment explanation
Indices: 59763198--59763246 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
59763188 AGTTTTTAAG
*
59763198 TTTTTAAGTTTTTAA
1 TTTTTAA-TTTTCAA
*
59763213 GTTTTTATTTTTCAA
1 -TTTTTAATTTTCAA
*
59763228 TTTTCAATTTTCAA
1 TTTTTAATTTTCAA
59763242 TTTTT
1 TTTTT
59763247 TTGAAGATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 16 0.57
15 6 0.21
16 6 0.21
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.67
Consensus pattern (14 bp):
TTTTTAATTTTCAA
Found at i:59763246 original size:8 final size:7
Alignment explanation
Indices: 59763221--59763245 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
59763211 AAGTTTTTAT
59763221 TTTTCAA
1 TTTTCAA
59763228 TTTTCAA
1 TTTTCAA
59763235 TTTTCAA
1 TTTTCAA
59763242 TTTT
1 TTTT
59763246 TTTGAAGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (7 bp):
TTTTCAA
Found at i:59763883 original size:21 final size:21
Alignment explanation
Indices: 59763859--59763903 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
59763849 CACAAACACC
59763859 AAACCTAAAAAC-TCAAACCAT
1 AAACCTAAAAACAT-AAACCAT
* *
59763880 AAACCTTAAATCATAAACCAT
1 AAACCTAAAAACATAAACCAT
59763901 AAA
1 AAA
59763904 ACTTACATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.58, C:0.24, G:0.00, T:0.18
Consensus pattern (21 bp):
AAACCTAAAAACATAAACCAT
Found at i:59763908 original size:21 final size:21
Alignment explanation
Indices: 59763873--59763924 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
59763863 CTAAAAACTC
*
59763873 AAACCATAAACCTTAAATCAT
1 AAACCATAAAACTTAAATCAT
* *
59763894 AAACCATAAAACTTACATCCT
1 AAACCATAAAACTTAAATCAT
*
59763915 AAACCCTAAA
1 AAACCATAAA
59763925 TATATATTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.21
Consensus pattern (21 bp):
AAACCATAAAACTTAAATCAT
Found at i:59764305 original size:40 final size:40
Alignment explanation
Indices: 59764209--59764287 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
59764199 GACGTTTTTT
59764209 AAAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTCA
1 AAAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTCA
*
59764249 AAAAAGTGCCGCTAATGCTCGATCTTTAGCGGCGTTTTC
1 AAAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTC
59764288 TTACTAGCGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (40 bp):
AAAAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTCA
Found at i:59766041 original size:19 final size:19
Alignment explanation
Indices: 59766017--59766055 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
59766007 AGAGGGCAGC
59766017 AAAGTAGTTTAAGGATTAG
1 AAAGTAGTTTAAGGATTAG
59766036 AAAGTAGTTTAAGGATTAG
1 AAAGTAGTTTAAGGATTAG
59766055 A
1 A
59766056 CTTGATTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.31
Consensus pattern (19 bp):
AAAGTAGTTTAAGGATTAG
Found at i:59768533 original size:41 final size:41
Alignment explanation
Indices: 59768487--59768569 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
59768477 TTTTAATAAA
59768487 AAAATAAAATATAATCTAACTTCTAATATAACGATCTTCAT
1 AAAATAAAATATAATCTAACTTCTAATATAACGATCTTCAT
59768528 AAAATAAAATATAATCTAACTTCTAATATAACGATCTTCAT
1 AAAATAAAATATAATCTAACTTCTAATATAACGATCTTCAT
59768569 A
1 A
59768570 GTACTTTTAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.34
Consensus pattern (41 bp):
AAAATAAAATATAATCTAACTTCTAATATAACGATCTTCAT
Found at i:59772252 original size:7 final size:7
Alignment explanation
Indices: 59772240--59772275 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
59772230 GGAAAGGAAA
59772240 TGAAGTG
1 TGAAGTG
59772247 TGAAGTG
1 TGAAGTG
59772254 TGAAGTG
1 TGAAGTG
59772261 TGAAGTG
1 TGAAGTG
59772268 TGAAGTG
1 TGAAGTG
59772275 T
1 T
59772276 TTTTCTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.42, T:0.31
Consensus pattern (7 bp):
TGAAGTG
Found at i:59772825 original size:25 final size:25
Alignment explanation
Indices: 59772797--59772885 Score: 108
Period size: 25 Copynumber: 3.5 Consensus size: 25
59772787 GTACAATAAA
59772797 AAATTTTTAATAACAGAAATGAATG
1 AAATTTTTAATAACAGAAATGAATG
* * *
59772822 AAATTTTTAACAGA-AGAACTAAATG
1 AAATTTTTAATA-ACAGAAATGAATG
*
59772847 ACAAATTTTTAATAGCAGAAATGAATG
1 --AAATTTTTAATAACAGAAATGAATG
59772874 AAATTTTTAATA
1 AAATTTTTAATA
59772886 TAAGAGCTAA
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
25 32 0.60
26 1 0.02
27 20 0.38
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.33
Consensus pattern (25 bp):
AAATTTTTAATAACAGAAATGAATG
Found at i:59778396 original size:69 final size:69
Alignment explanation
Indices: 59778284--59778422 Score: 208
Period size: 69 Copynumber: 2.0 Consensus size: 69
59778274 ATTCATTCAC
* ** * *
59778284 TGTAACAGCCCAATTTTTGTGAAATCAGAACAGTTGTTCGGGACCACAAATTCGAGCCGAAAATA
1 TGTAACAACCCAATTTCGGTGAAATCAGAACAGTGGTTCGGGACCAAAAATTCGAGCCGAAAATA
59778349 AAAT
66 AAAT
*
59778353 TGTAACAACCCAATTTCGGTGAAATC-GAAACAGTGGTTTGGGACCAAAAATTCGAGCCGAAAAT
1 TGTAACAACCCAATTTCGGTGAAATCAG-AACAGTGGTTCGGGACCAAAAATTCGAGCCGAAAAT
59778417 AAAAT
65 AAAAT
59778422 T
1 T
59778423 TATTTTTATT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
68 1 0.02
69 62 0.98
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (69 bp):
TGTAACAACCCAATTTCGGTGAAATCAGAACAGTGGTTCGGGACCAAAAATTCGAGCCGAAAATA
AAAT
Found at i:59778742 original size:18 final size:18
Alignment explanation
Indices: 59778705--59778743 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
59778695 TTGGAAATTA
*
59778705 AAATTATTAAAAGATGAT
1 AAATTATTAAAAGATAAT
59778723 AAATTATTAAATAGA-AAT
1 AAATTATTAAA-AGATAAT
59778741 AAA
1 AAA
59778744 AAATAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (18 bp):
AAATTATTAAAAGATAAT
Found at i:59783168 original size:18 final size:18
Alignment explanation
Indices: 59783147--59783182 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
59783137 TTTTAAATGT
59783147 TTTTTTATATTTTTAAAA
1 TTTTTTATATTTTTAAAA
*
59783165 TTTTTTATTTTTTTAAAA
1 TTTTTTATATTTTTAAAA
59783183 AATAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTTTATATTTTTAAAA
Found at i:59786528 original size:21 final size:20
Alignment explanation
Indices: 59786504--59786555 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
59786494 TTATGCCACA
59786504 TCAGTATTCTTATCCTGAATT
1 TCAGTATT-TTATCCTGAATT
*
59786525 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTGAATT
*
59786545 TTAGTATTTTA
1 TCAGTATTTTA
59786556 ATCTGGATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.25, C:0.13, G:0.12, T:0.50
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAATT
Found at i:59792535 original size:43 final size:43
Alignment explanation
Indices: 59792474--59792560 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
59792464 TTTAAGTGAA
59792474 TCATAATTCATACAAGTTGAAATTATAGTCTGAATGGTAGTTT
1 TCATAATTCATACAAGTTGAAATTATAGTCTGAATGGTAGTTT
59792517 TCATAATTCATACAAGTTGAAATTATAGTCTGAATGGTAGTTT
1 TCATAATTCATACAAGTTGAAATTATAGTCTGAATGGTAGTTT
59792560 T
1 T
59792561 TCTAAGTAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.40
Consensus pattern (43 bp):
TCATAATTCATACAAGTTGAAATTATAGTCTGAATGGTAGTTT
Found at i:59798932 original size:42 final size:41
Alignment explanation
Indices: 59798886--59798992 Score: 110
Period size: 43 Copynumber: 2.5 Consensus size: 41
59798876 GATGCCTCTA
* * *
59798886 TCCCAGATAGGGTCTTACACGAAAT-CAAATACGATGCC-GATG
1 TCCCAGACACGGTCTTACACGAAATAC-AAT-CGAGGCCTG-TG
* *
59798928 TCCCAGACATGGTCTTATACGTAAATATCAATCGAGGCCTGTG
1 TCCCAGACACGGTCTTACACG-AAATA-CAATCGAGGCCTGTG
59798971 TCCCAGACACGGTCTTACACGA
1 TCCCAGACACGGTCTTACACGA
59798993 TATCTCAGAT
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
42 19 0.35
43 31 0.56
44 4 0.07
45 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (41 bp):
TCCCAGACACGGTCTTACACGAAATACAATCGAGGCCTGTG
Found at i:59802352 original size:40 final size:40
Alignment explanation
Indices: 59802272--59802454 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
59802262 AATGATGTCT
* * * *
59802272 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
* *
59802312 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTAGTAAATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
59802352 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
59802392 GGGTTAAGTCCAGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
59802432 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
59802455 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 113 0.91
41 10 0.08
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:59805710 original size:27 final size:27
Alignment explanation
Indices: 59805658--59805766 Score: 132
Period size: 27 Copynumber: 4.1 Consensus size: 27
59805648 CATGGCTGCT
* * *
59805658 AGAACAGATAA-TGTGACAGTGTCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
*
59805684 AGAACAGATAATTGTGGCAAAGCCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
*
59805711 AGAACAGAT-ATATGTGGCAGTGCCACC
1 AGAACAGATAAT-TGTGGCAGAGCCACC
* *
59805738 AGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATAATTGTGGCAGAGCCACC
59805765 AG
1 AG
59805767 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
26 13 0.18
27 56 0.79
28 2 0.03
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (27 bp):
AGAACAGATAATTGTGGCAGAGCCACC
Found at i:59805738 original size:54 final size:53
Alignment explanation
Indices: 59805658--59805766 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 53
59805648 CATGGCTGCT
*
59805658 AGAACAGATAATGTGACAGTGTCACCAGAACAGATAATTGTGGCAAAGCCACC
1 AGAACAGATAATGTGACAGTGCCACCAGAACAGATAATTGTGGCAAAGCCACC
* * *
59805711 AGAACAGATATATGTGGCAGTGCCACCAGATCAGATAATTGTGGCATAGCCACC
1 AGAACAGATA-ATGTGACAGTGCCACCAGAACAGATAATTGTGGCAAAGCCACC
59805765 AG
1 AG
59805767 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 10 0.20
54 41 0.80
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (53 bp):
AGAACAGATAATGTGACAGTGCCACCAGAACAGATAATTGTGGCAAAGCCACC
Found at i:59807210 original size:24 final size:24
Alignment explanation
Indices: 59807177--59807251 Score: 114
Period size: 24 Copynumber: 3.1 Consensus size: 24
59807167 CACACCGTTG
* *
59807177 TCCCTAATCAGCTCCTAAATCCTC
1 TCCCTTATCAACTCCTAAATCCTC
* *
59807201 TCCCTTATCAACTCCGAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTC
59807225 TCCCTTATCAACTCCTAAATCCTC
1 TCCCTTATCAACTCCTAAATCCTC
59807249 TCC
1 TCC
59807252 TGACAGACTT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.41, G:0.03, T:0.31
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTC
Found at i:59811482 original size:43 final size:43
Alignment explanation
Indices: 59811433--59811535 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
59811423 CTGGTATTAC
*
59811433 GCCTGCTAGGCTTGAAGCCTGATATTAACTCACCGGCATTATA
1 GCCTGCTAGGCTCGAAGCCTGATATTAACTCACCGGCATTATA
*
59811476 GCCTGCTAGGCTCGAAGCCTGATATTAACTCACTGGCATTATA
1 GCCTGCTAGGCTCGAAGCCTGATATTAACTCACCGGCATTATA
59811519 GCCTGCTAGGCTCGAAG
1 GCCTGCTAGGCTCGAAG
59811536 GCCCGAATAG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (43 bp):
GCCTGCTAGGCTCGAAGCCTGATATTAACTCACCGGCATTATA
Found at i:59813754 original size:93 final size:93
Alignment explanation
Indices: 59813602--59813772 Score: 243
Period size: 93 Copynumber: 1.8 Consensus size: 93
59813592 GGATGGTTGA
* * ****
59813602 GCATCCGAACTCGTTGAGTTGAGTCTGAATTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAATTCACTTACGGATGCGAACACCCGAACTCGTTGAGT
59813667 TGAGTCCAAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* * * *
59813695 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAATTCACTTACGGATGCGAACACCCGAACTCGTTGAGT
*
59813760 TGAGTCCGAGTTC
66 TGAGTCCAAGTTC
59813773 ACTTAGGGGC
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAATTCACTTACGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:59822466 original size:49 final size:47
Alignment explanation
Indices: 59822393--59822848 Score: 714
Period size: 47 Copynumber: 9.6 Consensus size: 47
59822383 TATTTGAATA
* * *
59822393 AATGTGAAAGTGTAGATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59822440 AATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59822489 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59822536 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
59822585 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59822632 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
59822681 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
59822728 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
59822775 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
59822822 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
59822849 TCCCGAAGGG
Statistics
Matches: 380, Mismatches: 23, Indels: 12
0.92 0.06 0.03
Matches are distributed among these distances:
47 246 0.65
49 134 0.35
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:59822501 original size:96 final size:96
Alignment explanation
Indices: 59822393--59822848 Score: 785
Period size: 96 Copynumber: 4.8 Consensus size: 96
59822383 TATTTGAATA
* *
59822393 AATGTGAAAGTGTAGATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
59822458 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
59822489 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
59822554 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
59822585 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
59822650 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
59822681 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
59822744 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
59822775 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
59822839 -ATGTGATAAG
66 TATGTGATAAG
59822849 TCCCGAAGGG
Statistics
Matches: 343, Mismatches: 15, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
94 96 0.28
95 1 0.00
96 246 0.72
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:59822712 original size:143 final size:141
Alignment explanation
Indices: 59822393--59822848 Score: 723
Period size: 143 Copynumber: 3.2 Consensus size: 141
59822383 TATTTGAATA
* * * *
59822393 AATGTGAAAGTGTAGATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGCGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTATA
59822458 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
59822523 GGCCGATGTGATG
129 GGCCGATGTGATG
59822536 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * *
59822601 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGA
59822666 ATGGCCGATGTGATG
127 ATGGCCGATGTGATG
*
59822681 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
59822746 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
* *
59822811 CCAACGTGATG
131 CCGATGTGATG
* *
59822822 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
59822849 TCCCGAAGGG
Statistics
Matches: 291, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
141 54 0.19
143 150 0.52
145 87 0.30
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (141 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGG
CCGATGTGATG
Found at i:59825542 original size:46 final size:45
Alignment explanation
Indices: 59825492--59825664 Score: 165
Period size: 46 Copynumber: 3.8 Consensus size: 45
59825482 GTTGAGCATC
59825492 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTT
* * * *
59825538 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAA-T--G--TT
**
59825585 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CAT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAATGTT
* * *
59825630 CCAAGCTCATTGAGTTGAGTTCGAGTTCACTTAGG
1 CGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTAGG
59825665 GGCGGGTTAC
Statistics
Matches: 104, Mismatches: 13, Indels: 21
0.75 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 8 0.08
46 53 0.51
47 28 0.27
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGATGCGAATGTT
Found at i:59825646 original size:93 final size:93
Alignment explanation
Indices: 59825487--59825657 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
59825477 GGATGGTTGA
** * *
59825487 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATCATCCAACTCATTGAGT
59825552 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
59825580 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CATCCAAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATCATCCAA-CTCATTGAG
*
59825644 TTGAGTTCGAGTTC
65 TTGAGTCCGAGTTC
59825658 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 4 0.06
93 67 0.94
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATCATCCAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:59832509 original size:16 final size:18
Alignment explanation
Indices: 59832490--59832522 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
59832480 CATACAAATT
59832490 CCAAAAC-ATA-ATAGTA
1 CCAAAACGATAGATAGTA
59832506 CCAAAACGATAGATAGT
1 CCAAAACGATAGATAGT
59832523 GTGACGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.52, C:0.18, G:0.12, T:0.18
Consensus pattern (18 bp):
CCAAAACGATAGATAGTA
Found at i:59833150 original size:43 final size:43
Alignment explanation
Indices: 59833101--59833207 Score: 187
Period size: 43 Copynumber: 2.5 Consensus size: 43
59833091 GGCATTACGG
59833101 CTGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAGC
1 CTGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAGC
* *
59833144 CTGCTAGGCTCGAAGCCTGATATTAACTCACTGGCATTATAGC
1 CTGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAGC
59833187 CTGCTAGGCTCGAAGGCCCGA
1 CTGCTAGGCTCGAA-GCCCGA
59833208 ATAGTACTGT
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
43 55 0.92
44 5 0.08
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (43 bp):
CTGCTAGGCTCGAAGCCCGATATTAACTCACCGGCATTATAGC
Found at i:59840618 original size:49 final size:49
Alignment explanation
Indices: 59840565--59840705 Score: 223
Period size: 49 Copynumber: 2.9 Consensus size: 49
59840555 TTAGGATTTT
59840565 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGACCA
* *
59840614 ATGTGATGAATGTGAAAGTGTATGTAAATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGACCA
* * *
59840663 ATGTGATGAATGTGAAA--GTATATATATATGACAAGGCCGAATG
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATG
59840706 GCGAAGTGGA
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
47 22 0.26
49 64 0.74
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGACCA
Found at i:59842439 original size:79 final size:80
Alignment explanation
Indices: 59842308--59842495 Score: 290
Period size: 79 Copynumber: 2.4 Consensus size: 80
59842298 TTATATATCT
* *
59842308 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCTGGGCTAAGTCCCGAAGAGCATTCGT
1 GGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCCGAAGAGCATTCGT
** **
59842373 GCTGGTGTTAT-GTC
66 GCTGGTAATATACCC
59842387 GGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCCGAAGAGCATTCGT
1 GGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCCGAAGAGCATTCGT
59842452 GCTGGTAATATACCC
66 GCTGGTAATATACCC
**
59842467 GGGCTAAACCTCGAAG-GCATTCGTGCTGG
1 GGGCTAAGTCTCGAAGAGCATTCGTGCTGG
59842496 AATTATAAGG
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
79 85 0.85
80 15 0.15
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.27
Consensus pattern (80 bp):
GGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATGTCCGGGCTAAGTCCCGAAGAGCATTCGT
GCTGGTAATATACCC
Found at i:59842469 original size:40 final size:40
Alignment explanation
Indices: 59842308--59842495 Score: 283
Period size: 40 Copynumber: 4.8 Consensus size: 40
59842298 TTATATATCT
*
59842308 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCT
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
59842348 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT-C
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
*
59842387 GGGCTAAGTCTCGAAGAGCATTCGTGCTGGTGTTATGTCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
** **
59842427 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTAATATACCC
1 GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
*
59842467 GGGCTAA-ACCTCGAAG-GCATTCGTGCTGG
1 GGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
59842496 AATTATAAGG
Statistics
Matches: 138, Mismatches: 8, Indels: 5
0.91 0.05 0.03
Matches are distributed among these distances:
39 52 0.38
40 86 0.62
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGTCC
Found at i:59842591 original size:57 final size:57
Alignment explanation
Indices: 59842503--59842611 Score: 173
Period size: 57 Copynumber: 1.9 Consensus size: 57
59842493 TGGAATTATA
*
59842503 AGGCACTGTGTGTACAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTTG
1 AGGCACTATGTGTACAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTTG
* * * *
59842560 AGGCACTATGTGTGCGAGTTCTTCAACCGAGCACTATGTGTGCGAGATCAGT
1 AGGCACTATGTGTACAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGT
59842612 CAGTAGACAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (57 bp):
AGGCACTATGTGTACAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTTG
Found at i:59842602 original size:28 final size:28
Alignment explanation
Indices: 59842522--59842608 Score: 95
Period size: 28 Copynumber: 3.1 Consensus size: 28
59842512 GTGTACAAGC
*
59842522 TCTTCAACCGAGCACTATGTGTGCCAGA
1 TCTTCAACCGAGCACTATGTGTGCGAGA
* *** *
59842550 TCAGT-AGTTGAGGCACTATGTGTGCGAGT
1 TC-TTCAACCGA-GCACTATGTGTGCGAGA
59842579 TCTTCAACCGAGCACTATGTGTGCGAGA
1 TCTTCAACCGAGCACTATGTGTGCGAGA
59842607 TC
1 TC
59842609 AGTCAGTAGA
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
28 24 0.53
29 21 0.47
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (28 bp):
TCTTCAACCGAGCACTATGTGTGCGAGA
Found at i:59845712 original size:49 final size:49
Alignment explanation
Indices: 59845659--59845801 Score: 236
Period size: 49 Copynumber: 3.0 Consensus size: 49
59845649 TTAGGATTTT
59845659 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
*
59845708 ATGTGATGAATGTGAAAGTGTATGTAAATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
* * *
59845757 ATGTGATGAATGTGAAA--GTATATATATATGACAAGGCCGAATGGC
1 ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGC
59845802 GAAGTGGAAG
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 24 0.27
49 65 0.73
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.27
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCA
Found at i:59852633 original size:19 final size:18
Alignment explanation
Indices: 59852609--59852676 Score: 59
Period size: 19 Copynumber: 3.7 Consensus size: 18
59852599 AAATGAGATT
59852609 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAAT-AGGTGA
**
59852628 CAGAATCA-AA-ATTTGAA
1 CAGAATCAGAATAGGTG-A
*
59852645 TTAGAATCAGAAGTAGGTGA
1 -CAGAATCAGAA-TAGGTGA
59852665 CAGAATCAGAAT
1 CAGAATCAGAAT
59852677 CAGTATCAGG
Statistics
Matches: 38, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
16 3 0.08
17 1 0.03
18 10 0.26
19 20 0.53
20 1 0.03
21 3 0.08
ACGTcount: A:0.46, C:0.12, G:0.22, T:0.21
Consensus pattern (18 bp):
CAGAATCAGAATAGGTGA
Found at i:59852633 original size:37 final size:37
Alignment explanation
Indices: 59852592--59852672 Score: 105
Period size: 37 Copynumber: 2.2 Consensus size: 37
59852582 TATCAGAACT
59852592 AGAAT-AAAA-ATGAGATTCAGAATCAGAA-TCAGGTGAC
1 AGAATCAAAATATGA-ATT-AGAATCAGAAGT-AGGTGAC
*
59852629 AGAATCAAAATTTGAATTAGAATCAGAAGTAGGTGAC
1 AGAATCAAAATATGAATTAGAATCAGAAGTAGGTGAC
59852666 AGAATCA
1 AGAATCA
59852673 GAATCAGTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
37 29 0.73
38 8 0.20
39 3 0.08
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.21
Consensus pattern (37 bp):
AGAATCAAAATATGAATTAGAATCAGAAGTAGGTGAC
Found at i:59852674 original size:6 final size:6
Alignment explanation
Indices: 59852665--59852713 Score: 64
Period size: 6 Copynumber: 8.0 Consensus size: 6
59852655 AAGTAGGTGA
*
59852665 CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAGAAT CAGAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT CAGAAT
59852714 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
5 2 0.05
6 32 0.84
7 3 0.08
8 1 0.03
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
CAGAAT
Found at i:59852675 original size:25 final size:25
Alignment explanation
Indices: 59852642--59852710 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
59852632 ATCAAAATTT
* *
59852642 GAATTAGAATCAGAAGT-AGGTGACA
1 GAATCAGAATCAGAA-TCAGGTAACA
*
59852667 GAATCAGAATCAGTATCAGGTAACA
1 GAATCAGAATCAGAATCAGGTAACA
59852692 GAATCAGAATCAGAATCAG
1 GAATCAGAATCAGAATCAG
59852711 AATGTGAATG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 1 0.03
25 38 0.97
ACGTcount: A:0.45, C:0.13, G:0.23, T:0.19
Consensus pattern (25 bp):
GAATCAGAATCAGAATCAGGTAACA
Found at i:59852888 original size:27 final size:26
Alignment explanation
Indices: 59852831--59852889 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
59852821 AGCATGGCTG
*
59852831 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
**
59852857 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
*
59852884 TCAGAA
1 CCAGAA
59852890 TCAAATAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.21
27 22 0.79
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:59853025 original size:22 final size:22
Alignment explanation
Indices: 59852997--59853060 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 22
59852987 CCCACAATAA
59852997 TGGCACACAA-CCATAATCAGGT
1 TGGCACA-AAGCCATAATCAGGT
*
59853019 TGGCACAAAGCCAT-ATGTAGGT
1 TGGCACAAAGCCATAAT-CAGGT
*
59853041 TGGCGCAAAGCCATAATCAG
1 TGGCACAAAGCCATAATCAG
59853061 AATAATTGGC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 4 0.11
22 30 0.83
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.19
Consensus pattern (22 bp):
TGGCACAAAGCCATAATCAGGT
Found at i:59853595 original size:27 final size:28
Alignment explanation
Indices: 59853531--59853596 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
59853521 CAGTCACTTG
*
59853531 CCCACAAGGGCAAAATAGTCATTTGACA
1 CCCACAAGGGCAAAATAGTAATTTGACA
* * * *
59853559 CCC-TAGGGGCAAAATGGTAATTTTAC-
1 CCCACAAGGGCAAAATAGTAATTTGACA
59853585 CCCACAAGGGCA
1 CCCACAAGGGCA
59853597 TCTCGGTAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
26 3 0.10
27 24 0.80
28 3 0.10
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.18
Consensus pattern (28 bp):
CCCACAAGGGCAAAATAGTAATTTGACA
Found at i:59853709 original size:81 final size:81
Alignment explanation
Indices: 59853574--59853788 Score: 331
Period size: 81 Copynumber: 2.7 Consensus size: 81
59853564 GGGGCAAAAT
* * * * * *
59853574 GGTAATTTTACCCCACAAGGGCATCTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
59853639 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * *
59853655 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGATATTTCGGTATTTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
59853720 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* *
59853736 GGTAATTCTACCCTACAGGAGTATTTCGGTAATTCTACCATACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
59853789 TAATAATTTT
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 121 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (81 bp):
GGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTCTAC
CCTACAAGGGTATTTC
Found at i:59853796 original size:27 final size:27
Alignment explanation
Indices: 59853574--59853788 Score: 295
Period size: 27 Copynumber: 8.0 Consensus size: 27
59853564 GGGGCAAAAT
* * * * *
59853574 GGTAATTTTACCCCACAAGGGCATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
59853601 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
59853628 GATATTTCTTCCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
59853655 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
59853682 AGTAATTCTACCCTACAGGGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
59853709 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
59853736 GGTAATTCTACCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
59853763 GGTAATTCTACCATACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
59853789 TAATAATTTT
Statistics
Matches: 164, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 164 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:59853820 original size:81 final size:81
Alignment explanation
Indices: 59853602--59853825 Score: 218
Period size: 81 Copynumber: 2.8 Consensus size: 81
59853592 GGGCATCTCG
* * * * ** ***
59853602 GTAATTCTACCCTACAGGGGTATTTCGATATTTCTTCCCTACAAGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCATACAGGGATATTTCAATATTTCTACAATACAAGGGTAAAACGGTAATTCTACC
*
59853667 CTACAGGGGTATTTCA
66 CTACAGGAGTATTTCA
* ** ** ***
59853683 GTAATTCTACCCTACAGGGATATTTCGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACC
1 GTAATTCTACCATACAGGGATATTTCAATATTTCTACAATACAAGGGTAAAACGGTAATTCTACC
*
59853748 CTACAGGAGTATTTCG
66 CTACAGGAGTATTTCA
* * *
59853764 GTAATTCTACCATACAGGGGTATTTTAATAATTTTGTA-AAT-CAAGGGTAAAACGGTAATTCT
1 GTAATTCTACCATACAGGGATATTTCAAT-A-TTTCTACAATACAAGGGTAAAACGGTAATTCT
59853826 GTAAATTGAG
Statistics
Matches: 125, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
81 118 0.94
82 2 0.02
83 5 0.04
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (81 bp):
GTAATTCTACCATACAGGGATATTTCAATATTTCTACAATACAAGGGTAAAACGGTAATTCTACC
CTACAGGAGTATTTCA
Found at i:59856505 original size:44 final size:44
Alignment explanation
Indices: 59856424--59856508 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
59856414 ACATGTATCA
* *
59856424 CATCCATTATGAACTCGGACCAATTCAACGAGTTCAGATGCTCG
1 CATCCATAATGAACTCGGACCAATTCAACGAGCTCAGATGCTCG
* *
59856468 CATCCATAATGAACTCGGGCCAACTT-AATGAGCTCAGATGC
1 CATCCATAATGAACTCGGACCAA-TTCAACGAGCTCAGATGC
59856509 CTAATATATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 34 0.94
45 2 0.06
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (44 bp):
CATCCATAATGAACTCGGACCAATTCAACGAGCTCAGATGCTCG
Found at i:59864358 original size:31 final size:31
Alignment explanation
Indices: 59864322--59864414 Score: 94
Period size: 31 Copynumber: 3.2 Consensus size: 31
59864312 TCAATTAAGC
59864322 TTTTTTATATTTTAATGTGTATAGTTCTTTA
1 TTTTTTATATTTTAATGTGTATAGTTCTTTA
* *
59864353 TTTTTT-TAATTT-A--T-T-TAG--CATTA
1 TTTTTTATATTTTAATGTGTATAGTTCTTTA
59864376 GCTTTTTTATATTTTAATGTGTATAGTTCTTTA
1 --TTTTTTATATTTTAATGTGTATAGTTCTTTA
59864409 TTTTTT
1 TTTTTT
59864415 TAATTTATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 20
0.67 0.06 0.28
Matches are distributed among these distances:
23 4 0.08
25 9 0.19
26 6 0.12
27 2 0.04
29 2 0.04
30 6 0.12
31 15 0.31
33 4 0.08
ACGTcount: A:0.22, C:0.04, G:0.09, T:0.66
Consensus pattern (31 bp):
TTTTTTATATTTTAATGTGTATAGTTCTTTA
Found at i:59864380 original size:56 final size:56
Alignment explanation
Indices: 59864319--59864430 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
59864309 ATTTCAATTA
59864319 AGCTTTTTTATATTTTAATGTGTATAGTTCTTTATTTTTTTAATTTATTTAGCATT
1 AGCTTTTTTATATTTTAATGTGTATAGTTCTTTATTTTTTTAATTTATTTAGCATT
59864375 AGCTTTTTTATATTTTAATGTGTATAGTTCTTTATTTTTTTAATTTATTTAGCATT
1 AGCTTTTTTATATTTTAATGTGTATAGTTCTTTATTTTTTTAATTTATTTAGCATT
59864431 CATTTTTAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.23, C:0.05, G:0.09, T:0.62
Consensus pattern (56 bp):
AGCTTTTTTATATTTTAATGTGTATAGTTCTTTATTTTTTTAATTTATTTAGCATT
Found at i:59865299 original size:15 final size:15
Alignment explanation
Indices: 59865276--59865309 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
59865266 GTGTATGATA
* *
59865276 ATTTGTTTTTTTATT
1 ATTTATTTTTTTACT
59865291 ATTTATTTTTTTACT
1 ATTTATTTTTTTACT
59865306 ATTT
1 ATTT
59865310 TCATTCATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (15 bp):
ATTTATTTTTTTACT
Found at i:59877809 original size:27 final size:28
Alignment explanation
Indices: 59877779--59877835 Score: 64
Period size: 29 Copynumber: 2.0 Consensus size: 28
59877769 TTTTTTGATG
59877779 AAATAAGCTATTTG-GG-CTAATTTGTGA
1 AAATAAGCT-TTTGAGGACTAATTTGTGA
* *
59877806 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATAAGCTTTTG-AGGACTAATTTGTGA
59877835 A
1 A
59877836 TTTAACATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
26 4 0.16
27 7 0.28
28 2 0.08
29 12 0.48
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (28 bp):
AAATAAGCTTTTGAGGACTAATTTGTGA
Found at i:59879755 original size:37 final size:37
Alignment explanation
Indices: 59879705--59879778 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
59879695 CTACTAATTC
*
59879705 GAAATCTTTTCTTTTCCTCGATCTAACCTTGAATTAG
1 GAAATCTTTTCTTTTCCTCGATCTAACCTCGAATTAG
59879742 GAAATCTTTTCTTTTCCTCGATCTAACCTCGAATTAG
1 GAAATCTTTTCTTTTCCTCGATCTAACCTCGAATTAG
59879779 TGTTGTCTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.23, G:0.11, T:0.42
Consensus pattern (37 bp):
GAAATCTTTTCTTTTCCTCGATCTAACCTCGAATTAG
Found at i:59884506 original size:26 final size:26
Alignment explanation
Indices: 59884472--59884629 Score: 70
Period size: 26 Copynumber: 6.4 Consensus size: 26
59884462 TGGCTATTCA
59884472 GAGC-TCCTGATTAAAGGCTCTTTGT
1 GAGCTTCCTGATTAAAGGCTCTTTGT
* ***
59884497 GAGCTTCCTGGTTAAAATTTCTTTGT
1 GAGCTTCCTGATTAAAGGCTCTTTGT
* * * *
59884523 GAACTTCCTAATTATTA--CTC-TTAT
1 GAGCTTCCTGATTA-AAGGCTCTTTGT
* *
59884547 GAGCTTCATG-TTATATA-G--CTTGGAT
1 GAGCTTCCTGATTA-A-AGGCTCTTTG-T
* *
59884572 AAGCTCCCTGA-T--AGGCTCTTTGT
1 GAGCTTCCTGATTAAAGGCTCTTTGT
* *
59884595 GAGCTTCCCGATTAATGGC-CTTTGT
1 GAGCTTCCTGATTAAAGGCTCTTTGT
59884620 GAGCTTCCTG
1 GAGCTTCCTG
59884630 TTATATGGCT
Statistics
Matches: 95, Mismatches: 25, Indels: 26
0.65 0.17 0.18
Matches are distributed among these distances:
21 1 0.01
22 1 0.01
23 14 0.15
24 17 0.18
25 30 0.32
26 31 0.33
27 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (26 bp):
GAGCTTCCTGATTAAAGGCTCTTTGT
Found at i:59894110 original size:46 final size:46
Alignment explanation
Indices: 59894057--59894312 Score: 267
Period size: 46 Copynumber: 5.6 Consensus size: 46
59894047 ATTTGTGTTT
59894057 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGC
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGC
59894103 CAGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTGA-GATGAGGGC
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-ATGAT-A--GC
* * *
59894151 TAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGC
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGC
* ** *
59894197 CAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTTAGC
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGC
* * * *
59894243 TAGTGTCAA-ACATGTCTGGAACATGCATCGGCTACGA-GATG-T-GC
1 CAGTGT-AAGACATGTCTGGGACATGCATCGGCCAC-ATTATGATAGC
* *
59894287 TAGTGTAAGACATGTTTGGGACATGC
1 CAGTGTAAGACATGTCTGGGACATGC
59894313 TTCGACACGG
Statistics
Matches: 181, Mismatches: 16, Indels: 28
0.80 0.07 0.12
Matches are distributed among these distances:
43 2 0.01
44 23 0.13
45 8 0.04
46 91 0.50
47 31 0.17
48 20 0.11
49 6 0.03
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGC
Found at i:59894176 original size:94 final size:93
Alignment explanation
Indices: 59894058--59894311 Score: 329
Period size: 94 Copynumber: 2.8 Consensus size: 93
59894048 TTTGTGTTTC
59894058 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCCAGTGTAAGA-CATGTCTGG
** *
59894123 GACATGGCATCGGCATTGAGATGAGGGCT
65 GACATGGCATCGGCATCAAGATGAGAGCT
* *
59894152 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCCAGTGTAAGACATGTCTGGG
* **
59894217 ACAT-GCATCGGCCTCAAGATGTTAGCT
66 ACATGGCATCGGCATCAAGATGAGAGCT
* * * * *
59894244 AGTGTCAA-ACATGTCTGGAACATGCATCGGCTACGA-GATG-T-GCTAGTGTAAGACATGTTTG
1 AGTGT-AAGACATGTCTGGGACATGCATCGGCCAC-ATTATGATAGCCAGTGTAAGACATGTCTG
59894305 GGACATG
64 GGACATG
59894312 CTTCGACACG
Statistics
Matches: 142, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
90 24 0.17
92 48 0.34
93 17 0.12
94 53 0.37
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCCAGTGTAAGACATGTCTGGG
ACATGGCATCGGCATCAAGATGAGAGCT
Found at i:59894343 original size:136 final size:139
Alignment explanation
Indices: 59894056--59894355 Score: 353
Period size: 136 Copynumber: 2.2 Consensus size: 139
59894046 GATTTGTGTT
**
59894056 TCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCCAGTGTAAGACCATGTCT
1 TCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGATAGCCAGTGTAAGACCATGTCT
* * *
59894121 GGGACATGGCATCGGCATTGAGATGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC
66 GGAACATGGCATCGGCATCGAGAT-AGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGACAC
*
59894186 ATTATGAGAG
130 ATTATCAGAG
* * * *
59894196 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTTAGCTAGTGTCAA-A-CATGTC
1 TCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGATAGCCAGTGT-AAGACCATGTC
* * *
59894259 TGGAACAT-GCATCGGC-TACGAGAT-GTGCTAGTGTAAGACATGTTTGGGACATGCTTC-GACA
65 TGGAACATGGCATCGGCAT-CGAGATAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGACA
* *
59894320 CGGTTA-CATGTG
129 C-ATTATCA-GAG
* *
59894332 TCAGTGTAAGACCTGTCTAGGACA
1 TCAGTGTAAGACATGTCTGGGACA
59894356 CGGCATCGAC
Statistics
Matches: 138, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
135 5 0.04
136 56 0.41
137 1 0.01
138 13 0.09
139 13 0.09
140 48 0.35
141 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (139 bp):
TCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGATAGCCAGTGTAAGACCATGTCT
GGAACATGGCATCGGCATCGAGATAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGACACA
TTATCAGAG
Found at i:59900421 original size:50 final size:50
Alignment explanation
Indices: 59900348--59900597 Score: 297
Period size: 50 Copynumber: 5.0 Consensus size: 50
59900338 TAAGATGGTT
59900348 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * * *
59900398 TTAGGTCACATGTGTAATACTAAGTGCAGGCTACTATGCGTACCCGACAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAG
* * *
59900449 TTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 TT-AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* *
59900499 TTAGGTCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTACCAGAT-T
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * * *
59900548 TTTGGTCGCATGTATAGTACTAAGTGCAGGCTACTATGCGTACCATATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
59900598 CTTCGGTTAC
Statistics
Matches: 166, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
49 41 0.25
50 85 0.51
51 39 0.23
52 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
Found at i:59900481 original size:101 final size:101
Alignment explanation
Indices: 59900353--59900534 Score: 319
Period size: 101 Copynumber: 1.8 Consensus size: 101
59900343 TGGTTTTAGG
59900353 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAATAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAATAC
*
59900418 TAAGTGCAGGCTACTATGCGTACCCGACAACTTCAA
66 TAACTGCAGGCTACTATGCGTACCCGACAACTTCAA
* * * *
59900454 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAATAC
59900519 TAACTGCAGGCTACTA
66 TAACTGCAGGCTACTA
59900535 CGTGTACCAG
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
101 76 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAATAC
TAACTGCAGGCTACTATGCGTACCCGACAACTTCAA
Found at i:59900816 original size:16 final size:15
Alignment explanation
Indices: 59900795--59900824 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
59900785 GAATGGTGTA
59900795 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
59900811 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
59900825 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:59907784 original size:55 final size:55
Alignment explanation
Indices: 59907721--59907845 Score: 178
Period size: 55 Copynumber: 2.3 Consensus size: 55
59907711 AGCCCGTGTG
* *
59907721 CAACACTGACTTCAACACACGGCCATGGCACACGCCCGTGTGACTTGCCCATGTA
1 CAACACTGACTTCAACACACGGCCATGGCACACGCCCGTGTGACCTACCCATGTA
* * * * *
59907776 CGATACTGACTTTAAGACACGGCCATGGCACACGCCCGTGTGGCCTACCCATGTA
1 CAACACTGACTTCAACACACGGCCATGGCACACGCCCGTGTGACCTACCCATGTA
*
59907831 CAACAATGACTTCAA
1 CAACACTGACTTCAA
59907846 ATTTTAAGTA
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.27, C:0.34, G:0.20, T:0.19
Consensus pattern (55 bp):
CAACACTGACTTCAACACACGGCCATGGCACACGCCCGTGTGACCTACCCATGTA
Found at i:59911722 original size:28 final size:27
Alignment explanation
Indices: 59911656--59911807 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
59911646 ATATTAAGTC
* * * *
59911656 CGCACACTCAGTGCTATATAATCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
*
59911683 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
59911711 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
59911738 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
59911766 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
59911793 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
59911808 GCACAATTTA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:59911741 original size:55 final size:55
Alignment explanation
Indices: 59911656--59911807 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
59911646 ATATTAAGTC
* * *
59911656 CGCACACTCAGTGCTATATAATCAATTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAATCAAACT
* *
59911711 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAATCAAACT
59911766 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
59911808 GCACAATTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 91 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTACATAATCAAACT
Found at i:59921789 original size:40 final size:40
Alignment explanation
Indices: 59921734--59921958 Score: 305
Period size: 40 Copynumber: 5.6 Consensus size: 40
59921724 TATTCGGATG
*
59921734 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
59921774 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGAAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
59921814 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
*
59921857 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
59921897 ATATCCGGGCTAAGACCCGAAGGCATGTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-TGACT
*
59921937 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
59921959 TACTTGGGTT
Statistics
Matches: 167, Mismatches: 11, Indels: 15
0.87 0.06 0.08
Matches are distributed among these distances:
39 17 0.10
40 112 0.67
41 2 0.01
43 34 0.20
44 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:59921891 original size:83 final size:82
Alignment explanation
Indices: 59921734--59921958 Score: 318
Period size: 83 Copynumber: 2.8 Consensus size: 82
59921724 TATTCGGATG
*
59921734 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--TAG-TGACCATATCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGGTAGTTG-CTATATCCGGGCTAAGTCCCGAAG
59921796 GCATTTGTGCTAGTGAAT
65 GCATTTGTGCTAGTGAAT
* *
59921814 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCG-GTAGTTGCTATATCCGGGCTAAGTCCCGAAG
*
59921879 GCATTTGTGCTAGTGACT
65 GCATTTGTGCTAGTGAAT
* * * *
59921897 ATATCCGGGCTAAGACCCGAAGGCATGTGTG-TG-AGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGGTAGTTGCTATATCCGGGCTAAGTCCCGAAGG
59921959 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
79 15 0.11
80 43 0.33
81 1 0.01
83 70 0.53
84 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (82 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGGTAGTTGCTATATCCGGGCTAAGTCCCGAAGG
CATTTGTGCTAGTGAAT
Found at i:59933709 original size:76 final size:76
Alignment explanation
Indices: 59933577--59933727 Score: 194
Period size: 76 Copynumber: 2.0 Consensus size: 76
59933567 AGCATTGTAC
* * * * * * * * *
59933577 TACATTATCGAATAAATCGAAAGAAATTTATTGGCACACACTGTGCATCGTTGGACAAGCCAAAG
1 TACATCATCGAATAAATCAAAAAAAATATATTGCCACACACTATGCATCATCGGACAAGCCAAAA
59933642 CAATTATACTG
66 CAATTATACTG
* * *
59933653 TACATCATCGGATAAATCAAAAAAAATATATTGCCACATACTATGCATCATCGGACAAGTCAAAA
1 TACATCATCGAATAAATCAAAAAAAATATATTGCCACACACTATGCATCATCGGACAAGCCAAAA
59933718 CAATTATACT
66 CAATTATACT
59933728 AACATGCGTA
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
76 63 1.00
ACGTcount: A:0.42, C:0.19, G:0.13, T:0.26
Consensus pattern (76 bp):
TACATCATCGAATAAATCAAAAAAAATATATTGCCACACACTATGCATCATCGGACAAGCCAAAA
CAATTATACTG
Found at i:59941978 original size:154 final size:154
Alignment explanation
Indices: 59941698--59942006 Score: 514
Period size: 154 Copynumber: 2.0 Consensus size: 154
59941688 GTGAAAGACC
* *
59941698 TAGACAGTCATTGGGCTTTATTGTATCCTCAAGGTTCATTTGCCAGTAACTCTTTTGCACACCAT
1 TAGACAGTCATTGGGCTTCATTATATCCTCAAGGTTCATTTGCCAGTAACTCTTTTGCACACCAT
* * *
59941763 AGTATAGGTGGAGGCGAATAGACACTTAAAAAAAGTGGCAATGTTACATGCCTTGAAGCCTTTGT
66 AGTATAGGTGGAGGCGAATAGAAACTTAAAAAAAGTGGCAATGTTACACGCCTTGAAGCCTTTAT
59941828 TAATTTCTCATAAATTTATTCTTA
131 TAATTTCTCATAAATTTATTCTTA
*
59941852 TAGACAGTCATTGGGCTTCATTATATCCTCAATGTTCATTTGCCAGTAACTCTTTTGCACACCAT
1 TAGACAGTCATTGGGCTTCATTATATCCTCAAGGTTCATTTGCCAGTAACTCTTTTGCACACCAT
*
59941917 AGTATAGGT-G-GGCAAGAATAGAAACTTAAAAAAAGTGGCAATGTTACACGCTTTGAAGCCTTT
66 AGTATAGGTGGAGGC--GAATAGAAACTTAAAAAAAGTGGCAATGTTACACGCCTTGAAGCCTTT
*
59941980 ATTAATTTCTCATAAATTTTTTCTTA
129 ATTAATTTCTCATAAATTTATTCTTA
59942006 T
1 T
59942007 TCCCACGCAC
Statistics
Matches: 145, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
152 3 0.02
153 1 0.01
154 141 0.97
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (154 bp):
TAGACAGTCATTGGGCTTCATTATATCCTCAAGGTTCATTTGCCAGTAACTCTTTTGCACACCAT
AGTATAGGTGGAGGCGAATAGAAACTTAAAAAAAGTGGCAATGTTACACGCCTTGAAGCCTTTAT
TAATTTCTCATAAATTTATTCTTA
Found at i:59944148 original size:79 final size:81
Alignment explanation
Indices: 59944006--59944188 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
59943996 TACTCGTTCA
* * *
59944006 AATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
59944070 TTTAGT-A-TCTCGCACC
66 TATAGTCACT-TAGCA-C
**
59944086 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
59944148 ATATGGTCACTTAGCAC
65 ATATAGTCACTTAGCAC
*
59944165 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
59944189 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 56 0.63
80 29 0.33
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTCACTTAGCAC
Found at i:59944188 original size:40 final size:40
Alignment explanation
Indices: 59943986--59944188 Score: 218
Period size: 40 Copynumber: 5.1 Consensus size: 40
59943976 GGAATTTAAT
** *
59943986 CGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
59944026 TGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
59944066 CGGATTTAGTATCTCGCACCAATGCCTTCGGG-CTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
59944105 CGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTC
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCC
* * *
59944145 CGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 CGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
59944185 CGGA
1 CGGA
59944189 CATCATTCGA
Statistics
Matches: 136, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.24
40 90 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:59945456 original size:85 final size:84
Alignment explanation
Indices: 59945351--59945528 Score: 347
Period size: 85 Copynumber: 2.1 Consensus size: 84
59945341 TATTTTATTG
59945351 CCCATGCTCTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
1 CCCATGCTCTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
59945416 AGCCATAACATCTTGTCCA
66 AGCCATAACATCTTGTCCA
59945435 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTC-TTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
59945500 TAGCCATAACATCTTGTCCA
65 TAGCCATAACATCTTGTCCA
59945520 CCCATGCTC
1 CCCATGCTC
59945529 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
84 9 0.10
85 84 0.90
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (84 bp):
CCCATGCTCTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTT
AGCCATAACATCTTGTCCA
Found at i:59951990 original size:39 final size:39
Alignment explanation
Indices: 59951942--59952088 Score: 158
Period size: 39 Copynumber: 3.8 Consensus size: 39
59951932 CGGAATTTAA
* ** *
59951942 CCGGATATAGCTACTCGTTCAAATGCCTTCGGGACAT-AG
1 CCGGTTATAG-TACTCGCACAAATGCCTTCGGGACATAAC
*
59951981 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGTTATAGT-ACTCGCACAAATGCCTTCGGGACATAAC
* *
59952021 CCGGATT-TAGTACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGG-TTATAGTACTCGCACAAATGCCTTCGGGACATAAC
**
59952059 CCGAAT-TAGTACTCGCACAAATGCCTTCGG
1 CCGGTTATAGTACTCGCACAAATGCCTTCGG
59952089 ATCTTAGTCC
Statistics
Matches: 97, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
37 25 0.26
38 9 0.09
39 52 0.54
40 9 0.09
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGTTATAGTACTCGCACAAATGCCTTCGGGACATAAC
Found at i:59953429 original size:85 final size:83
Alignment explanation
Indices: 59953300--59953476 Score: 336
Period size: 85 Copynumber: 2.1 Consensus size: 83
59953290 TATTTTATTG
59953300 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
59953365 TAGCCATAACATCTTGTCCA
66 TA--CATAACATCTTGTCCA
59953385 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
59953450 TACATAACATCTTGTCCA
66 TACATAACATCTTGTCCA
59953468 CCCATGCTC
1 CCCATGCTC
59953477 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
83 25 0.27
85 67 0.73
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (83 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TACATAACATCTTGTCCA
Found at i:59958227 original size:50 final size:51
Alignment explanation
Indices: 59958142--59958329 Score: 127
Period size: 53 Copynumber: 3.6 Consensus size: 51
59958132 GAAGATGCGT
* * *
59958142 TGCCA-TGTCCCAAGGACCATTGTTCTTACATTGGCTTCACGTTACAAT-GCAGA
1 TGCCATTGTCCCAA--A-CATTGTTCTTACACTGGC-TCACATAACAATGGCAGA
* * *
59958195 TGCCA-TGTCCTAGACATTG-TCTTAACACTGGCTCACATAACAATGGCCGA
1 TGCCATTGTCCCAAACATTGTTCTT-ACACTGGCTCACATAACAATGGCAGA
* * * *
59958245 TGCCATTGTCCCAAACATTGGGTCTTAC-CTGGCTCCCACGTAACAAATTGCCGA
1 TGCCATTGTCCCAAACATT-GTTCTTACACTGGCT--CACATAAC-AATGGCAGA
*
59958299 TTGCCATTGTTTCCCAGACA-TGTTCTTACAC
1 -TGCCATTG--TCCCAAACATTGTTCTTACAC
59958330 GTACACATTA
Statistics
Matches: 111, Mismatches: 12, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
49 14 0.13
50 21 0.19
51 18 0.16
52 3 0.03
53 22 0.20
54 8 0.07
55 15 0.14
56 2 0.02
57 8 0.07
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (51 bp):
TGCCATTGTCCCAAACATTGTTCTTACACTGGCTCACATAACAATGGCAGA
Found at i:59961249 original size:39 final size:37
Alignment explanation
Indices: 59961177--59961273 Score: 124
Period size: 40 Copynumber: 2.5 Consensus size: 37
59961167 CCGAGCATTG
59961177 TGCTAGTGATTTTATCCGGGTAACCCGAAGGCA-TTTA
1 TGCTAGTGA-TTTATCCGGGTAACCCGAAGGCATTTTA
* *
59961214 TGCTAGTGATTTATCTGGGTTAAGACCCGAAGGCATTTTG
1 TGCTAGTGATTTATCCGGG-T-A-ACCCGAAGGCATTTTA
59961254 TGCTAGTGATTTTATCCGGG
1 TGCTAGTGA-TTTATCCGGG
59961274 CTTAGACCAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
36 9 0.17
37 10 0.19
38 1 0.02
39 11 0.21
40 12 0.23
41 9 0.17
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (37 bp):
TGCTAGTGATTTATCCGGGTAACCCGAAGGCATTTTA
Found at i:59961299 original size:37 final size:38
Alignment explanation
Indices: 59961174--59961328 Score: 157
Period size: 37 Copynumber: 4.2 Consensus size: 38
59961164 GTTCCGAGCA
59961174 TTGTGCTAGTGATTTTATCCGGG--TA-ACCCGAAGGCAT
1 TTGTGCTAGTGA-TTTATCCGGGCTTAGA-CCGAAGGCAT
* *
59961211 TTATGCTAGTGATTTATCTGGG-TTAAGACCCGAAGGCATT
1 TTGTGCTAGTGATTTATCCGGGCTT-AGA-CCGAAGGCA-T
59961251 TTGTGCTAGTGATTTTATCCGGGCTTAGACC-AA-GCAT
1 TTGTGCTAGTGA-TTTATCCGGGCTTAGACCGAAGGCAT
* *
59961288 TTGTGCGAGTGA--TATCC-GGCTAAGACCGAAGGCAT
1 TTGTGCTAGTGATTTATCCGGGCTTAGACCGAAGGCAT
59961323 TTGTGC
1 TTGTGC
59961329 GAGTTTGCTA
Statistics
Matches: 104, Mismatches: 6, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
33 9 0.09
34 7 0.07
35 10 0.10
36 9 0.09
37 24 0.23
38 4 0.04
39 13 0.12
40 14 0.13
41 12 0.12
42 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (38 bp):
TTGTGCTAGTGATTTATCCGGGCTTAGACCGAAGGCAT
Found at i:59969522 original size:40 final size:39
Alignment explanation
Indices: 59969463--59969709 Score: 313
Period size: 40 Copynumber: 6.3 Consensus size: 39
59969453 CATTTGAATG
*
59969463 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TT
* * *
59969503 TTATCCGGGTTAAGACCCGAAGGCATTTATGCTAGT-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTT
*
59969541 -TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTT
* *
59969579 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTT
* *
59969618 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTT
* * * *
59969658 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GTT
59969698 ATATCC-GGCTAA
1 ATATCCGGGCTAA
59969710 ATTCCGAAGA
Statistics
Matches: 186, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
37 34 0.18
38 36 0.19
39 9 0.05
40 107 0.58
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTT
Found at i:59977928 original size:40 final size:40
Alignment explanation
Indices: 59977870--59978076 Score: 272
Period size: 40 Copynumber: 5.2 Consensus size: 40
59977860 ATTTGAATGA
* *
59977870 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
59977910 TATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
59977950 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTATTT
1 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* * * * *
59977990 TATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTG-CTA
1 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * * * *
59978030 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
59978070 TATCCGG
1 TATCCGG
59978077 CTAAATTCCG
Statistics
Matches: 146, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
39 2 0.01
40 143 0.98
41 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (40 bp):
TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:59980288 original size:40 final size:40
Alignment explanation
Indices: 59980240--59980408 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
59980230 AGCACTGTAC
*
59980240 ATAGCTGAAGCTATCTCAAATCGCACACTAAGTGTCATAT
1 ATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCATAT
* ** ** *
59980280 ATAACTGAAGCTATCTCGATCTCGCACACTAAGTATCGTAT
1 ATAGCTGAAGCTATCTC-AAATCGCACACTAAGTGCCATAT
* * ** * *
59980321 ATAGCCGAAGCTATATTGAATCGCAGACTAACTGCCATAT
1 ATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCATAT
** * *
59980361 ATAGCCAAAGCTATGTCGAATCGCACACTAAGTGCCATAT
1 ATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCATAT
59980401 ATAGCTGA
1 ATAGCTGA
59980409 TTTGTCGTCG
Statistics
Matches: 104, Mismatches: 24, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 72 0.69
41 32 0.31
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (40 bp):
ATAGCTGAAGCTATCTCAAATCGCACACTAAGTGCCATAT
Found at i:59980360 original size:81 final size:81
Alignment explanation
Indices: 59980217--59980393 Score: 205
Period size: 81 Copynumber: 2.2 Consensus size: 81
59980207 AATACTCAAT
* * * * *
59980217 ATCTCGCACACTAAGCACTGTACATAGCTGAAGCTATCTCAAATCGCACACTAAGTGTCATATAT
1 ATCTCGCACACTAAGTACTGTACATAGCCGAAGCTATATCAAATCGCACACTAACTGCCATATAT
**
59980282 AACTGAAGCTATCTCG
66 AACCAAAGCTATCTCG
* ** *
59980298 ATCTCGCACACTAAGTA-TCGTATATAGCCGAAGCTATATTGAATCGCAGACTAACTGCCATATA
1 ATCTCGCACACTAAGTACT-GTACATAGCCGAAGCTATATCAAATCGCACACTAACTGCCATATA
* *
59980362 TAGCCAAAGCTATGTCG
65 TAACCAAAGCTATCTCG
*
59980379 A-ATCGCACACTAAGT
1 ATCTCGCACACTAAGT
59980394 GCCATATATA
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
80 14 0.17
81 67 0.83
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (81 bp):
ATCTCGCACACTAAGTACTGTACATAGCCGAAGCTATATCAAATCGCACACTAACTGCCATATAT
AACCAAAGCTATCTCG
Found at i:59988210 original size:48 final size:46
Alignment explanation
Indices: 59988158--59988330 Score: 190
Period size: 48 Copynumber: 3.7 Consensus size: 46
59988148 GTCGAGGCTA
*
59988158 ATGCCATGTTCCAAACATGGTTTTACACTAGCTCTTATCTAAATGCCG
1 ATGCCATGTTCCAAACATGGTCTTACACTAGCTC-TA-CTAAATGCCG
* * *
59988206 ATGCCATGTCCCAAACATGGTCTTACACTAGCAC-ACATAAACGCCG
1 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCTAC-TAAATGCCG
* * * *
59988252 ATGCCATG-TCCTAGACATGGTCTTACACTGGCTCT-CATAATGTGGTCG
1 ATGCCATGTTCC-AAACATGGTCTTACACTAGCTCTAC-TAA-AT-GCCG
59988300 ATGCCATGTTCCAAACATGGTCTTACACTAG
1 ATGCCATGTTCCAAACATGGTCTTACACTAG
59988331 TACACATATC
Statistics
Matches: 106, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
45 3 0.03
46 41 0.39
48 59 0.56
49 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (46 bp):
ATGCCATGTTCCAAACATGGTCTTACACTAGCTCTACTAAATGCCG
Found at i:59988286 original size:94 final size:94
Alignment explanation
Indices: 59988158--59988338 Score: 242
Period size: 94 Copynumber: 1.9 Consensus size: 94
59988148 GTCGAGGCTA
* *
59988158 ATGCCATGTTCCAAACATGGTTTTACACTAGCTCTTATCTAA-AT-GCCGATGCCATGTCCCAAA
1 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCA--TAATATGGCCGATGCCATGTCCCAAA
59988221 CATGGTCTTACACTAGCACACATAAACGCCG
64 CATGGTCTTACACTAGCACACATAAACGCCG
* * * * *
59988252 ATGCCATG-TCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCCATGTTCCAAAC
1 ATGCCATGTTCC-AAACATGGTCTTACACTAGCTCTCATAATATGGCCGATGCCATGTCCCAAAC
*
59988316 ATGGTCTTACACTAGTACACATA
65 ATGGTCTTACACTAGCACACATA
59988339 TCACTCAATC
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 3 0.04
93 4 0.05
94 69 0.91
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (94 bp):
ATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATAATATGGCCGATGCCATGTCCCAAACA
TGGTCTTACACTAGCACACATAAACGCCG
Found at i:59994430 original size:40 final size:40
Alignment explanation
Indices: 59994365--59994440 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
59994355 TATATATATA
*
59994365 TAGCCGAAGCTATCTTAAATTGCACACCAAGTGCCACGTT
1 TAGCCGAAGCTATCTTAAATCGCACACCAAGTGCCACGTT
* * *
59994405 TAGCCGAAGCTATTTTGAATCGCACACTAAGTGCCA
1 TAGCCGAAGCTATCTTAAATCGCACACCAAGTGCCA
59994441 TTTTAGTCGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (40 bp):
TAGCCGAAGCTATCTTAAATCGCACACCAAGTGCCACGTT
Found at i:59996785 original size:93 final size:95
Alignment explanation
Indices: 59996688--59996907 Score: 250
Period size: 98 Copynumber: 2.3 Consensus size: 95
59996678 CGGATATAGA
* * * *
59996688 AGCTAGTGTAAGACCTGTCTGGGACATGGCGTCAG-CTTG-T-TGTG-TGTCAGCGTAAGACCTG
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAAGTCAGCGTAAGACCTG
* * *
59996749 TCTGGGACATGGCATCGACACCAATAGATGAG
66 TCTAGGACACGGCATCAACACCAAT-G-TGAG
* *
59996781 AGCTAGTGTAAGACCTATCTGGGACATGGCATCAGCCTCGATATATGAAAGTCAGTGTAAGACCT
1 AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATG-AAGTCAGCGTAAGACCT
*** **
59996846 GTCTAGGACACGGCATCAACTTTAATGTGCT
65 GTCTAGGACACGGCATCAACACCAATGTGAG
59996877 AGCTAGTGTAAGACCATGTCTGGGACATGGC
1 AGCTAGTGTAAGACC-TGTCTGGGACATGGC
59996908 CTTGACATTT
Statistics
Matches: 106, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
93 33 0.31
94 3 0.03
95 1 0.01
96 20 0.19
97 15 0.14
98 34 0.32
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (95 bp):
AGCTAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAAGTCAGCGTAAGACCTG
TCTAGGACACGGCATCAACACCAATGTGAG
Found at i:59996811 original size:49 final size:47
Alignment explanation
Indices: 59996739--59996907 Score: 155
Period size: 49 Copynumber: 3.5 Consensus size: 47
59996729 GTGTGTCAGC
*
59996739 GTAAGACCTGTCTGGGACATGGCATCGACACCAATAGATGAGAGCTAGT
1 GTAAGACCTGTCTGGGACATGGCATC-AC-CCAATAGATGAAAGCTAGT
* * *
59996788 GTAAGACCTATCTGGGACATGGCATCAGCCTCGATATATGAAAG-TCAGT
1 GTAAGACCTGTCTGGGACATGGCATCA-CC-CAATAGATGAAAGCT-AGT
* * ** **
59996837 GTAAGACCTGTCTAGGACACGGCATCAACTTTAAT-G-TGCTAGCTAGT
1 GTAAGACCTGTCTGGGACATGGCATC-AC-CCAATAGATGAAAGCTAGT
59996884 GTAAGACCATGTCTGGGACATGGC
1 GTAAGACC-TGTCTGGGACATGGC
59996908 CTTGACATTT
Statistics
Matches: 98, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
47 15 0.15
48 17 0.17
49 65 0.66
50 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.24
Consensus pattern (47 bp):
GTAAGACCTGTCTGGGACATGGCATCACCCAATAGATGAAAGCTAGT
Found at i:59997954 original size:13 final size:13
Alignment explanation
Indices: 59997936--59997960 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59997926 TGGCCGTGTG
59997936 ATGGACACGGGCC
1 ATGGACACGGGCC
59997949 ATGGACACGGGC
1 ATGGACACGGGC
59997961 GAGTGTCAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.40, T:0.08
Consensus pattern (13 bp):
ATGGACACGGGCC
Found at i:60005324 original size:50 final size:49
Alignment explanation
Indices: 60005096--60005325 Score: 241
Period size: 50 Copynumber: 4.6 Consensus size: 49
60005086 ATCTGATACG
* *
60005096 CGTAGTAGCCTGCACTTAGTACTACACATGCGAC-CAAAAATCTGGTACA
1 CGTAGTAGCCTGCACTTAGTACTACACATGCGACTC-AAAGTATGGTACA
* * * * *
60005145 CGTAGTAGCCTGCACTTAGTACTACACACGTGACGTCACCA-TCTGATACA
1 CGTAGTAGCCTGCACTTAGTACTACACATGCGAC-TCA-AAGTATGGTACA
* * * * * *
60005195 CGCAGTAGCCTACACTTAGTACTACACACGTGA-TCGAAGTCATTGAGTACG
1 CGTAGTAGCCTGCACTTAGTACTACACATGCGACTCAAAGT-A-TG-GTACA
* *
60005246 CATAGTAGCCTGCACTTAGTACTACACATGCGACTTAATAGTATGGTACA
1 CGTAGTAGCCTGCACTTAGTACTACACATGCGACTCAA-AGTATGGTACA
60005296 CGTAGTAGCCTGCACTTAGTACTACACATG
1 CGTAGTAGCCTGCACTTAGTACTACACATG
60005326 TGTATTCACA
Statistics
Matches: 152, Mismatches: 20, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
47 1 0.01
48 3 0.02
49 32 0.21
50 75 0.49
51 35 0.23
52 3 0.02
53 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (49 bp):
CGTAGTAGCCTGCACTTAGTACTACACATGCGACTCAAAGTATGGTACA
Found at i:60009422 original size:27 final size:26
Alignment explanation
Indices: 60009336--60009423 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 26
60009326 CAGCAAAGCT
* *
60009336 ACCAGAAACAGTAAATGTGACAAAGCC
1 ACCAGTAACAGT-AATGTGACATAGCC
* * * *
60009363 ACCAATATCAGTAATTGTGGCATGGCC
1 ACCAGTAACAGTAA-TGTGACATAGCC
*
60009390 ACCAGTAACAGTGAATGTGACATAGTC
1 ACCAGTAACAGT-AATGTGACATAGCC
60009417 ACCAGTA
1 ACCAGTA
60009424 TAGTACTTCC
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
26 2 0.04
27 44 0.92
28 2 0.04
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
ACCAGTAACAGTAATGTGACATAGCC
Found at i:60009592 original size:27 final size:27
Alignment explanation
Indices: 60009563--60009731 Score: 212
Period size: 27 Copynumber: 6.3 Consensus size: 27
60009553 AAGGCATAAT
** * *
60009563 GGTCATTTTACTATACAGTGGTATTAT
1 GGTCATTTTACCCTACAGGGGTATTAC
*
60009590 GGTTATTTTACCCTACAGGGGTATTAC
1 GGTCATTTTACCCTACAGGGGTATTAC
** * * *
60009617 AATCATTTTACCCTACAGAGGCATTAT
1 GGTCATTTTACCCTACAGGGGTATTAC
60009644 GGTCATTTTACCCTACAGGGGTATTAC
1 GGTCATTTTACCCTACAGGGGTATTAC
60009671 GGTCATTTTACCCTACAGGGGTATTAC
1 GGTCATTTTACCCTACAGGGGTATTAC
* * * *
60009698 GGCCATTTTACCTTATAGGGATATTAC
1 GGTCATTTTACCCTACAGGGGTATTAC
60009725 GGTCATT
1 GGTCATT
60009732 CTACAAACTG
Statistics
Matches: 121, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 121 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTCATTTTACCCTACAGGGGTATTAC
Found at i:60009729 original size:81 final size:81
Alignment explanation
Indices: 60009554--60009748 Score: 214
Period size: 81 Copynumber: 2.4 Consensus size: 81
60009544 CGGAACATAA
* * * * * *
60009554 AGGCATAATGGTCATTTTACTATACAGTGGTATTATGGTTATTTTACCCTACAGGGGTATTACAA
1 AGGCATTACGGTCATTTTACCATACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTACAA
*
60009619 TCATTTTACCCTACAG
66 CCATTTTACCCTACAG
* * **
60009635 AGGCATTATGGTCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTACGG
1 AGGCATTACGGTCATTTTACCATACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTACAA
* *
60009700 CCATTTTACCTTATAG
66 CCATTTTACCCTACAG
* * * *
60009716 -GGATATTACGGTCATTCTA-CAAACTGGGGTATT
1 AGG-CATTACGGTCATTTTACCATACAGGGGTATT
60009749 TTGGTAACAA
Statistics
Matches: 96, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
80 13 0.14
81 83 0.86
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.35
Consensus pattern (81 bp):
AGGCATTACGGTCATTTTACCATACAGGGGTATTACGGTCATTTTACCCTACAGGGGTATTACAA
CCATTTTACCCTACAG
Found at i:60021048 original size:8 final size:8
Alignment explanation
Indices: 60021035--60021066 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
60021025 TACCAAAGTG
60021035 GGCCCGTT
1 GGCCCGTT
60021043 GGCCCGTT
1 GGCCCGTT
*
60021051 GGCCCATT
1 GGCCCGTT
60021059 GGCCCGTT
1 GGCCCGTT
60021067 TTCAGCCCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.38, G:0.34, T:0.25
Consensus pattern (8 bp):
GGCCCGTT
Found at i:60021455 original size:27 final size:27
Alignment explanation
Indices: 60021409--60021525 Score: 128
Period size: 27 Copynumber: 4.3 Consensus size: 27
60021399 GGCAAAATGG
* * *
60021409 TAATTTTACCCCACAAGGGTATCTC-A
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
60021435 GTAATTCTACCCTATAGGGGTATTTCGA
1 -TAATTCTACCCTACAAGGGTATTTCGA
*
60021463 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * * *
60021490 TAATTCTATCCTACAAGCGTATTTTGG
1 TAATTCTACCCTACAAGGGTATTTCGA
60021517 TAATTCTAC
1 TAATTCTAC
60021526 AACTTATCCA
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
27 74 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:60026012 original size:11 final size:13
Alignment explanation
Indices: 60025998--60026043 Score: 53
Period size: 12 Copynumber: 3.7 Consensus size: 13
60025988 TTAAGGTTAA
60025998 ATAT-ATAAAT-T
1 ATATAATAAATGT
60026009 ATATAATAATATGT
1 ATATAATAA-ATGT
*
60026023 ATATAATAAAAG-
1 ATATAATAAATGT
60026035 ATATAATAA
1 ATATAATAA
60026044 TTAAAGCCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
11 4 0.13
12 13 0.42
13 4 0.13
14 10 0.32
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (13 bp):
ATATAATAAATGT
Found at i:60026038 original size:12 final size:14
Alignment explanation
Indices: 60026008--60026044 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
60025998 ATATATAAAT
*
60026008 TATATAATAATATG
1 TATATAATAATAAG
60026022 TATATAATAA-AAG
1 TATATAATAATAAG
60026035 -ATATAATAAT
1 TATATAATAAT
60026045 TAAAGCCATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
12 9 0.43
13 2 0.10
14 10 0.48
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (14 bp):
TATATAATAATAAG
Found at i:60027254 original size:50 final size:51
Alignment explanation
Indices: 60027168--60027383 Score: 181
Period size: 50 Copynumber: 4.3 Consensus size: 51
60027158 GCTAAATGAC
* * ** * *
60027168 CTTGTATATTCGGCCA-CATAGGTATGTACATTTGTGATGTTGTATTGGGT
1 CTTGAATATTCGGCCATCATAGGTATGCACAAATGTGATATTGTATTGGAT
* * *
60027218 CTTGAATATTCGGCCATGAT-GGTATGCACAAATGTGATATTTTATTTGAT
1 CTTGAATATTCGGCCATCATAGGTATGCACAAATGTGATATTGTATTGGAT
* * * * ** *
60027268 CTTGCATATTCGGCCAT-ATAGGTAAGTACATATGTGATATTAAATTTGAT
1 CTTGAATATTCGGCCATCATAGGTATGCACAAATGTGATATTGTATTGGAT
* * * * *
60027318 CTT-ACATATTCGGCCAT-ACAGGTAAGCACATATGTGATATTATATTTGAT
1 CTTGA-ATATTCGGCCATCATAGGTATGCACAAATGTGATATTGTATTGGAT
* *
60027368 CTTGTATATTTGGCCA
1 CTTGAATATTCGGCCA
60027384 AATGAGTGAT
Statistics
Matches: 141, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
49 2 0.01
50 137 0.97
51 2 0.01
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.39
Consensus pattern (51 bp):
CTTGAATATTCGGCCATCATAGGTATGCACAAATGTGATATTGTATTGGAT
Found at i:60027347 original size:100 final size:100
Alignment explanation
Indices: 60027168--60027383 Score: 274
Period size: 100 Copynumber: 2.2 Consensus size: 100
60027158 GCTAAATGAC
* * * ** *
60027168 CTTGTATATTCGGCCACATAGGTATGTACATTTGTGATGTTGTATTGGGTCTTGAATATTCGGCC
1 CTTGTATATTCGGCCACATAGGTAAGTACATATGTGATATTAAATTGGATCTTGAATATTCGGCC
* * *
60027233 ATGATGGTATGCACAAATGTGATATTTTATTTGAT
66 ATGAAGGTAAGCACAAATGTGATATTATATTTGAT
* * *
60027268 CTTGCATATTCGGCCATATAGGTAAGTACATATGTGATATTAAATTTGATCTT-ACATATTCGGC
1 CTTGTATATTCGGCCACATAGGTAAGTACATATGTGATATTAAATTGGATCTTGA-ATATTCGGC
*
60027332 CAT-ACAGGTAAGCACATATGTGATATTATATTTGAT
65 CATGA-AGGTAAGCACAAATGTGATATTATATTTGAT
*
60027368 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
60027384 AATGAGTGAT
Statistics
Matches: 99, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
99 2 0.02
100 97 0.98
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.39
Consensus pattern (100 bp):
CTTGTATATTCGGCCACATAGGTAAGTACATATGTGATATTAAATTGGATCTTGAATATTCGGCC
ATGAAGGTAAGCACAAATGTGATATTATATTTGAT
Found at i:60038372 original size:46 final size:46
Alignment explanation
Indices: 60038320--60038473 Score: 154
Period size: 46 Copynumber: 3.3 Consensus size: 46
60038310 ATTTGGGCAT
* *
60038320 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGC
* * * *
60038366 CCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCAC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAA-T--G--C
* *
60038413 CCGAACTCGTTGAGTTGAGTTCAAGTTCACTCATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGC
*
60038459 CCGAGCTCGTTGAGT
1 CCGAACTCGTTGAGT
60038474 CCGAGTTCGC
Statistics
Matches: 87, Mismatches: 12, Indels: 18
0.74 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.06
45 3 0.03
46 42 0.48
47 25 0.29
48 3 0.03
50 5 0.06
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGC
Found at i:60043852 original size:46 final size:45
Alignment explanation
Indices: 60043799--60043972 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
60043789 TATTTGGGCA
60043799 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
60043845 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGA--GATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
60043890 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
60043936 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60043973 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 32 0.29
46 69 0.62
47 4 0.04
48 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:60043908 original size:91 final size:91
Alignment explanation
Indices: 60043795--60043964 Score: 304
Period size: 91 Copynumber: 1.9 Consensus size: 91
60043785 AGGATATTTG
* *
60043795 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60043860 TTGAGTCCGAGTTCGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGATGTAACTA
* *
60043886 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60043951 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
60043965 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (91 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGATGTAACTA
Found at i:60047006 original size:27 final size:27
Alignment explanation
Indices: 60046976--60047071 Score: 129
Period size: 27 Copynumber: 3.6 Consensus size: 27
60046966 AAATTGTACA
* *
60046976 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGAT
* *
60047003 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGAT
* **
60047030 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGAT
60047057 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
60047072 GTTTGCACTA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGAT
Found at i:60047036 original size:54 final size:51
Alignment explanation
Indices: 60046976--60047170 Score: 202
Period size: 54 Copynumber: 3.8 Consensus size: 51
60046966 AAATTGTACA
* *
60046976 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG-AATG-ATATG-T
* * **
60047030 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCG-A-G-T-T-T
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAATGATATGT
* *
60047076 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGATTACGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-ATGA-TATGT
* * *
60047129 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 -GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
60047171 GACTAATATA
Statistics
Matches: 120, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
46 38 0.32
48 1 0.01
49 2 0.02
51 2 0.02
52 1 0.01
53 1 0.01
54 75 0.62
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (51 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAATGATATGT
Found at i:60047081 original size:19 final size:19
Alignment explanation
Indices: 60047057--60047093 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
60047047 TGACCATGCG
60047057 GCACTAAGTGTGCGAGTTT
1 GCACTAAGTGTGCGAGTTT
60047076 GCACTAAGTGTGCGAGTT
1 GCACTAAGTGTGCGAGTT
60047094 GACTATGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.30
Consensus pattern (19 bp):
GCACTAAGTGTGCGAGTTT
Found at i:60047096 original size:46 final size:46
Alignment explanation
Indices: 60047029--60047120 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
60047019 ATGAATATGA
*
60047029 TGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTT
1 TGCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTT
* * *
60047075 TGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTT
1 TGCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTT
60047121 GATTACGTAG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (46 bp):
TGCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTT
Found at i:60047114 original size:27 final size:27
Alignment explanation
Indices: 60047076--60047170 Score: 154
Period size: 27 Copynumber: 3.5 Consensus size: 27
60047066 GTGCGAGTTT
*
60047076 GCACTAAGTGTGCGAGTTGACTATGTA
1 GCACTAAGTGTGCGAGTTGATTATGTA
*
60047103 GCACTAAGTGTGCGAGTTGATTACGTA
1 GCACTAAGTGTGCGAGTTGATTATGTA
*
60047130 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGTTGATTATGTA
*
60047157 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
60047171 GACTAATATA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTGATTATGTA
Found at i:60047134 original size:73 final size:73
Alignment explanation
Indices: 60047001--60047147 Score: 197
Period size: 73 Copynumber: 2.0 Consensus size: 73
60046991 TTTGACTATG
* *
60047001 TTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGT
1 TTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGT
60047066 GTGCGAGT
66 GTGCGAGT
** * * ** *
60047074 TTGCACTAAGTGTGCGAGTTGACTATG-TAGCACTAAGTGTGCGAGTTGATTACGTAGCACTAAG
1 TTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCACGCAGCACTAAG
60047138 TGTGCGAGT
65 TGTGCGAGT
60047147 T
1 T
60047148 GATTATATAG
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
72 1 0.02
73 63 0.98
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (73 bp):
TTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCACGCAGCACTAAGT
GTGCGAGT
Found at i:60047161 original size:100 final size:100
Alignment explanation
Indices: 60046976--60047170 Score: 257
Period size: 100 Copynumber: 1.9 Consensus size: 100
60046966 AAATTGTACA
* * *
60046976 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
* *
60047041 GCGAATTGACCATGCGGCACTAAGTGTGCGAGTTT
66 GCGAATTGACCATACAGCACTAAGTGTGCGAGTTT
** *
60047076 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTGATTACG-TAGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTG
* ** * *
60047140 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAATTGACCATACAGCACTAAGTGTGCG
60047171 GACTAATATA
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 1 0.01
100 80 0.99
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (100 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATACAGCACTAAGTGTGCGAGTTT
Found at i:60054883 original size:27 final size:27
Alignment explanation
Indices: 60054852--60055057 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
60054842 TAAATTGTAC
60054852 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60054879 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60054905 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60054933 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
60054961 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60054988 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
60055016 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60055043 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60055058 GACTTAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
27 108 0.69
28 48 0.31
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60054966 original size:82 final size:83
Alignment explanation
Indices: 60054851--60055057 Score: 269
Period size: 82 Copynumber: 2.5 Consensus size: 83
60054841 TTAAATTGTA
*
60054851 CAGCACTAAGTGTGCGA-TTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAA
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAA
60054914 GTGTGCGA-ATTGACCATG
65 GTGTGCGAGATTGACCATG
* ** *
60054932 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAG
* **
60054997 TGTGCGAGTTTGATTATG
66 TGTGCGAGATTGACCATG
* * * *
60055015 TAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGTGCG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCG
60055058 GACTTAATAT
Statistics
Matches: 110, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
81 16 0.15
82 70 0.64
83 24 0.22
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (83 bp):
CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAG
TGTGCGAGATTGACCATG
Found at i:60054982 original size:55 final size:55
Alignment explanation
Indices: 60054852--60055057 Score: 272
Period size: 55 Copynumber: 3.8 Consensus size: 55
60054842 TAAATTGTAC
* * **
60054852 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGA-AATGAATATG-
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGAATATGT
* * ** *
60054905 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGT
1 A-GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGAATATGT
*
60054961 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGAATATGT
* * *
60055016 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
60055058 GACTTAATAT
Statistics
Matches: 135, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 38 0.28
55 95 0.70
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGAATATGT
Found at i:60056682 original size:50 final size:50
Alignment explanation
Indices: 60056628--60056746 Score: 141
Period size: 50 Copynumber: 2.4 Consensus size: 50
60056618 TGTTGCATTG
* *
60056628 GATCTTGAATATTCTGCCATGA-AGGTATGCACAAATGTGACATTATATTT
1 GATCTTGAATATTCGGCCAT-ATAGGTAAGCACAAATGTGACATTATATTT
* * * *
60056678 GATCTCGCATATTCGGCCATATAGGTAAGCACATATGTGATATTATATTT
1 GATCTTGAATATTCGGCCATATAGGTAAGCACAAATGTGACATTATATTT
* * *
60056728 TATCTTAAATATTTGGCCA
1 GATCTTGAATATTCGGCCA
60056747 AACGAGTGAT
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
49 1 0.02
50 56 0.98
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (50 bp):
GATCTTGAATATTCGGCCATATAGGTAAGCACAAATGTGACATTATATTT
Found at i:60058839 original size:42 final size:43
Alignment explanation
Indices: 60058783--60058887 Score: 115
Period size: 44 Copynumber: 2.4 Consensus size: 43
60058773 GATACCACTA
* * * * *
60058783 TCCCAGATAGGGTCTTACACG-AAAT-CATATACGAAGCCAATG
1 TCCCAGACATGGTCTTACACGAAAATAGAAAT-CGAAGCCAACG
*
60058825 TCCCAGACATGGTCTTACACGTAAAATAGAAATCGATGCCAACG
1 TCCCAGACATGGTCTTACACG-AAAATAGAAATCGAAGCCAACG
*
60058869 TCCCAGACGTGGTCTTACA
1 TCCCAGACATGGTCTTACA
60058888 TGCAAAAAGA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 19 0.36
44 31 0.58
45 3 0.06
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGAAAATAGAAATCGAAGCCAACG
Found at i:60064475 original size:51 final size:51
Alignment explanation
Indices: 60064335--60064561 Score: 170
Period size: 51 Copynumber: 4.5 Consensus size: 51
60064325 CGGATGCCTG
* * * * * ** * *
60064335 GTGGCCTGCA-TATAATACCACCCTTGTGGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTGCACT-TAGTACCACACATGTGATCAAAGCTATCTGGTACACATA
* * * * **
60064386 GTGGCCTTCACATAGTACCACACTTGTGAGCAAAGCTATCTTTTACACATA
1 GTGGCCTGCACTTAGTACCACACATGTGATCAAAGCTATCTGGTACACATA
* * *
60064437 GTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCAGGTACGCATA
1 GTGGCCTGCACTTAGTACCACACATGTGATCAAAGCTATCTGGTACACATA
* * * * * * * *
60064488 GTAGCCTGTACTTAGTACTACAAATGCGACCTAA-CCATCTGGTACACATA
1 GTGGCCTGCACTTAGTACCACACATGTGATCAAAGCTATCTGGTACACATA
* * *
60064538 GTAGCCTACACTTAGTACTACACA
1 GTGGCCTGCACTTAGTACCACACA
60064562 CATGACCTAA
Statistics
Matches: 143, Mismatches: 32, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
50 34 0.24
51 109 0.76
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (51 bp):
GTGGCCTGCACTTAGTACCACACATGTGATCAAAGCTATCTGGTACACATA
Found at i:60064569 original size:50 final size:50
Alignment explanation
Indices: 60064429--60064571 Score: 146
Period size: 50 Copynumber: 2.8 Consensus size: 50
60064419 AGCTATCTTT
* * * * * *
60064429 TACACATAGTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCAGG
1 TACACATAGTAGCCTGCACTTAGTACTACACA-ATGACCTAAGCCATCAGG
* * *
60064480 TACGCATAGTAGCCTGTACTTAGTACTACA-AATGCGACCTAA-CCATCTGG
1 TACACATAGTAGCCTGCACTTAGTACTACACAAT--GACCTAAGCCATCAGG
*
60064530 TACACATAGTAGCCTACACTTAGTACTACACACATGACCTAA
1 TACACATAGTAGCCTGCACTTAGTACTACACA-ATGACCTAA
60064572 AACCACTTTA
Statistics
Matches: 76, Mismatches: 12, Indels: 9
0.78 0.12 0.09
Matches are distributed among these distances:
49 1 0.01
50 41 0.54
51 32 0.42
52 2 0.03
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (50 bp):
TACACATAGTAGCCTGCACTTAGTACTACACAATGACCTAAGCCATCAGG
Found at i:60068897 original size:28 final size:30
Alignment explanation
Indices: 60068823--60068900 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 30
60068813 CTGTAAAAGT
60068823 GATTGGGCCTAGTGGGCCATATAGATATGA
1 GATTGGGCCTAGTGGGCCATATAGATATGA
* *
60068853 -TTTGGGCCTAATGGGCCATAT-GA-ATGA
1 GATTGGGCCTAGTGGGCCATATAGATATGA
* *
60068880 GATTGGGGCTAGTCGGCCATA
1 GATTGGGCCTAGTGGGCCATA
60068901 AGCATGTATG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 4 0.10
28 18 0.44
29 19 0.46
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.27
Consensus pattern (30 bp):
GATTGGGCCTAGTGGGCCATATAGATATGA
Found at i:60070902 original size:15 final size:15
Alignment explanation
Indices: 60070884--60070923 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
60070874 TCCATAACGG
*
60070884 AGAAATCCAGA-ATAT
1 AGAAATCCA-ACATAA
60070899 AGAAATCCAACATAA
1 AGAAATCCAACATAA
60070914 AGAAATCCAA
1 AGAAATCCAA
60070924 AACAAGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 1 0.04
15 22 0.96
ACGTcount: A:0.57, C:0.17, G:0.10, T:0.15
Consensus pattern (15 bp):
AGAAATCCAACATAA
Found at i:60073217 original size:40 final size:40
Alignment explanation
Indices: 60073162--60073356 Score: 320
Period size: 40 Copynumber: 4.9 Consensus size: 40
60073152 GGATAGAGCT
*
60073162 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
60073202 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
60073242 ACTCGCACAATTGCGTTCGGGACTTGGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
60073282 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
60073322 ACTCGTACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
60073357 CAATCCAAAT
Statistics
Matches: 145, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.09
40 132 0.91
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:60073272 original size:80 final size:80
Alignment explanation
Indices: 60073136--60073356 Score: 322
Period size: 80 Copynumber: 2.8 Consensus size: 80
60073126 AAACCAAGTA
* * * *
60073136 CCTTCGGAATTTAG-CCGGATAGAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
60073199 GTAACTCGCACAATTG
65 GTAACTCGCACAAATG
* * * *
60073215 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCGTTCGGGACTTGGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
60073280 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
60073295 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
60073357 CAATCCAAAT
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
79 26 0.21
80 100 0.79
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:60077707 original size:51 final size:51
Alignment explanation
Indices: 60077629--60077769 Score: 137
Period size: 51 Copynumber: 2.8 Consensus size: 51
60077619 ACGGATGCCC
* **
60077629 AGTGGCC-TGCACATAGTACCACCCTTGT-AGTGAAAGCTACCTTCTT-CACAA
1 AGTGGCCGT-CACATAGTACCACACTTGTGA-CCAAAGCTACCTT-TTACACAA
* *
60077680 AGTGGCCGTCACATAGTACCACACTTGTGACCAAAGCTATCTTTTACACAT
1 AGTGGCCGTCACATAGTACCACACTTGTGACCAAAGCTACCTTTTACACAA
* * * *
60077731 AGTGGCCAG-CACTTAGTACCACACATGTGATCGAAGCTA
1 AGTGGCC-GTCACATAGTACCACACTTGTGACCAAAGCTA
60077770 TCGGGTATGT
Statistics
Matches: 77, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
50 2 0.03
51 72 0.94
52 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (51 bp):
AGTGGCCGTCACATAGTACCACACTTGTGACCAAAGCTACCTTTTACACAA
Found at i:60081018 original size:45 final size:45
Alignment explanation
Indices: 60080968--60081055 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
60080958 AAACATGTGT
* *
60080968 CACATACATCATGAACTCAGACCATAACTCAATGAGTTCAGATGC
1 CACATACATCATGAACTCAGACAACAACTCAATGAGTTCAGATGC
* * *
60081013 CACATATATTATGAACTCAGACAACAACTTAATGAGTTCAGAT
1 CACATACATCATGAACTCAGACAACAACTCAATGAGTTCAGAT
60081056 CACATAGTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.25
Consensus pattern (45 bp):
CACATACATCATGAACTCAGACAACAACTCAATGAGTTCAGATGC
Found at i:60082412 original size:2 final size:2
Alignment explanation
Indices: 60082405--60082434 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
60082395 ATAAGCCATG
60082405 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
60082435 TATATATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:60085608 original size:43 final size:43
Alignment explanation
Indices: 60085569--60085679 Score: 147
Period size: 43 Copynumber: 2.6 Consensus size: 43
60085559 CATCCCAGGT
*
60085569 GTGGTCTTACATGTAATCACATATCGATGCCACTGTCCCAGACA
1 GTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGA-A
* *
60085613 G-GGTCTTACACGTAATCACATAACGATGCCAATGTCCCA-AA
1 GTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAA
60085654 CGTGGTCTTACATG-AATACACATATC
1 -GTGGTCTTACATGTAAT-CACATATC
60085680 AGAATCCTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
41 1 0.02
42 5 0.08
43 52 0.88
44 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
GTGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAA
Found at i:60086505 original size:23 final size:23
Alignment explanation
Indices: 60086475--60086520 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
60086465 CAATGGCCGA
60086475 ACCTTAAAACTTTATTTTTCTTT
1 ACCTTAAAACTTTATTTTTCTTT
*
60086498 ACCTTAAAGCTTTATTTTTCTTT
1 ACCTTAAAACTTTATTTTTCTTT
60086521 CTTTCTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.17, G:0.02, T:0.57
Consensus pattern (23 bp):
ACCTTAAAACTTTATTTTTCTTT
Done.