Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 186 of 325
Found at i:60406560 original size:82 final size:81
Alignment explanation
Indices: 60406389--60406569 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60406379 GATTAAATTG
* *
60406389 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60406454 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60406470 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60406534 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60406552 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60406570 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60414476 original size:27 final size:27
Alignment explanation
Indices: 60414445--60414622 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60414435 TAAATTGTAC
60414445 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
60414472 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60414498 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
60414526 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
60414554 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60414581 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60414608 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60414623 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60414559 original size:82 final size:81
Alignment explanation
Indices: 60414446--60414601 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
60414436 AAATTGTACA
* *
60414446 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
60414510 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
60414527 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
60414592 TGCGAGTTGA
65 TGCGAATTGA
60414602 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:60414613 original size:82 final size:81
Alignment explanation
Indices: 60414442--60414622 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
60414432 GATTAAATTG
* *
60414442 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
60414507 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
60414523 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
60414587 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
60414605 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
60414623 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:60416831 original size:71 final size:71
Alignment explanation
Indices: 60416715--60416854 Score: 262
Period size: 71 Copynumber: 2.0 Consensus size: 71
60416705 TTTTTACTCG
*
60416715 GATTTTGTGTGAAGGTTCATCAAGAAGTGTTTTCTGGCTCAAATATATATGCTAAGGATGAATAA
1 GATTTTGTGTGAAGGTTCATCAAGAAATGTTTTCTGGCTCAAATATATATGCTAAGGATGAATAA
60416780 ATGGAA
66 ATGGAA
*
60416786 GATTTTGTGTGAAGGTTCATCAAGAAATGTTTTCTGGCTTAAATATATATGCTAAGGATGAATAA
1 GATTTTGTGTGAAGGTTCATCAAGAAATGTTTTCTGGCTCAAATATATATGCTAAGGATGAATAA
60416851 ATGG
66 ATGG
60416855 GGTTAGCTTT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.34, C:0.08, G:0.24, T:0.35
Consensus pattern (71 bp):
GATTTTGTGTGAAGGTTCATCAAGAAATGTTTTCTGGCTCAAATATATATGCTAAGGATGAATAA
ATGGAA
Found at i:60427486 original size:40 final size:40
Alignment explanation
Indices: 60427440--60427628 Score: 267
Period size: 40 Copynumber: 4.7 Consensus size: 40
60427430 GCTACTCATT
*
60427440 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
60427480 CCAATGCCTTCGGGACTTAGCCCGAATT-TGGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCG-GTTATAGTAACTCGCA
*
60427520 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
**
60427560 CAAATGCCTTCGGGACTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
60427600 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
60427629 CATCCGAATA
Statistics
Matches: 134, Mismatches: 10, Indels: 10
0.87 0.06 0.06
Matches are distributed among these distances:
39 1 0.01
40 129 0.96
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:60427542 original size:80 final size:80
Alignment explanation
Indices: 60427440--60427628 Score: 317
Period size: 80 Copynumber: 2.4 Consensus size: 80
60427430 GCTACTCATT
* *
60427440 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
* *
60427505 ATTTGGTAACTCGCA
66 AATTAGTAACTCGCA
*
60427520 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
60427584 AAATTAGTAACTCGCA
65 AAATTAGTAACTCGCA
60427600 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
60427629 CATCCGAATA
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
79 1 0.01
80 99 0.98
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
AATTAGTAACTCGCA
Found at i:60432130 original size:31 final size:31
Alignment explanation
Indices: 60432083--60432228 Score: 240
Period size: 31 Copynumber: 4.7 Consensus size: 31
60432073 TTAGTCTTGA
*
60432083 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
60432113 CATATCACTGGGTCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
60432144 CATATCACTGAGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
**
60432175 CATATCACTGAACCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
60432206 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
60432229 ACTGTAAACG
Statistics
Matches: 108, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
30 5 0.05
31 103 0.95
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:60432299 original size:42 final size:42
Alignment explanation
Indices: 60432252--60432343 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
60432242 TGGCCCTTAG
* * * **
60432252 GCCCATTTCAATTTCACATGTAATGTTAATGGATGTATGCAA
1 GCCCATTTCAATATCACATATAATGTCAATAAATGTATGCAA
60432294 GCCCATTTCAATATCACATATAATGTCAATAAATGTATGCAA
1 GCCCATTTCAATATCACATATAATGTCAATAAATGTATGCAA
60432336 GCCCATTT
1 GCCCATTT
60432344 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.34
Consensus pattern (42 bp):
GCCCATTTCAATATCACATATAATGTCAATAAATGTATGCAA
Found at i:60432585 original size:25 final size:25
Alignment explanation
Indices: 60432493--60432584 Score: 150
Period size: 25 Copynumber: 3.7 Consensus size: 25
60432483 CTTTTAATAG
60432493 CTGGGGCAAAGCCCTTTCTGATAAA
1 CTGGGGCAAAGCCCTTTCTGATAAA
60432518 CTGGGGCAAAGCCCTTTCTGATAAA
1 CTGGGGCAAAGCCCTTTCTGATAAA
*
60432543 CTGGGGCAAAGCCCTTT-TCGGTAAA
1 CTGGGGCAAAGCCCTTTCT-GATAAA
*
60432568 CTGGGGCAGAGCCCTTT
1 CTGGGGCAAAGCCCTTT
60432585 TAGCACTTCC
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
24 1 0.02
25 63 0.98
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (25 bp):
CTGGGGCAAAGCCCTTTCTGATAAA
Found at i:60433370 original size:26 final size:28
Alignment explanation
Indices: 60433326--60433377 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
60433316 TACAAGGGTA
60433326 TTACGGTCACTTTACCCTA-TAGGGGCT
1 TTACGGTCACTTTACCCTATTAGGGGCT
**
60433353 TTACGGTCTTTTTA-CCTATTAGGGG
1 TTACGGTCACTTTACCCTATTAGGGG
60433378 TATTTTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.17, C:0.21, G:0.23, T:0.38
Consensus pattern (28 bp):
TTACGGTCACTTTACCCTATTAGGGGCT
Found at i:60433442 original size:27 final size:27
Alignment explanation
Indices: 60433412--60433464 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
60433402 GGGTGTTTTG
60433412 GTAAATCTACAAACCAAGGGTATTTCA
1 GTAAATCTACAAACCAAGGGTATTTCA
* ** *
60433439 GTAATTCTGTAAACCAATGGTATTTC
1 GTAAATCTACAAACCAAGGGTATTTC
60433465 TATAATTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (27 bp):
GTAAATCTACAAACCAAGGGTATTTCA
Found at i:60433470 original size:27 final size:26
Alignment explanation
Indices: 60433422--60433519 Score: 90
Period size: 27 Copynumber: 3.6 Consensus size: 26
60433412 GTAAATCTAC
60433422 AAACCAAGGGTATTTC-AGTAATTCTGT
1 AAACCAAGGGTATTTCTA-TAATT-TGT
* *
60433449 AAACCAATGGTATTTCTATAATTTTT
1 AAACCAAGGGTATTTCTATAATTTGT
*
60433475 AGAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAA-TTTGT
* *
60433505 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
60433520 TGGTAATTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
26 2 0.03
27 31 0.52
28 7 0.12
29 16 0.27
30 4 0.07
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (26 bp):
AAACCAAGGGTATTTCTATAATTTGT
Found at i:60433526 original size:27 final size:27
Alignment explanation
Indices: 60433510--60433669 Score: 205
Period size: 27 Copynumber: 5.9 Consensus size: 27
60433500 TTTGTAAATC
60433510 AGGGGTATTTTGGTAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTTTACAAACT
* *
60433536 TGAGGGTATTTTGGTAATTTCACAAACT
1 AG-GGGTATTTTGGTAATTTTACAAACT
* *
60433564 AGTGGTATTTTGGTAATTTTATAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
60433591 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
* ** *
60433618 AGGGGTATTTTGGTAATTCTATCCTACA
1 AGGGGTATTTTGGTAATTTTA-CAAACT
* *
60433646 AGGGGTATTTTAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTACAA
60433670 TCGAGGGTAA
Statistics
Matches: 114, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 90 0.79
28 23 0.20
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:60433891 original size:27 final size:26
Alignment explanation
Indices: 60433512--60433884 Score: 175
Period size: 27 Copynumber: 13.8 Consensus size: 26
60433502 TGTAAATCAG
*
60433512 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTA-TTTGGTAATTTTACAAATCGA
* *
60433539 GGGTATTTTGGTAATTTCACAAA-CTA
1 GGGTA-TTTGGTAATTTTACAAATCGA
* *
60433565 GTGGTATTTTGGTAATTTTATAAA-CTA
1 G-GGTA-TTTGGTAATTTTACAAATCGA
*
60433592 GGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTA-TTTGGTAATTTTACAAATCGA
* ** *
60433619 GGGGTATTTTGGTAATTCTATCCTA-CAA
1 -GGGTA-TTTGGTAATTTTA-CAAATCGA
* *
60433647 GGGGTATTTTAGTAATTTCAC-AATCGA
1 -GGGTA-TTTGGTAATTTTACAAATCGA
*** **
60433674 GGGTAAAACGGTAATTTTGTAAA-CTGA
1 GGGT-ATTTGGTAATTTTACAAATC-GA
** **
60433701 GGGTAAAATGGTAATTTTGTAAATCGA
1 GGGT-ATTTGGTAATTTTACAAATCGA
*** * * * *
60433728 GGGTAAAACGATAATTCTATAAGTCGA
1 GGGT-ATTTGGTAATTTTACAAATCGA
* *
60433755 GGGTACTTTGATAATTTTACAAGTCGA
1 GGGTA-TTTGGTAATTTTACAAATCGA
** *
60433782 GGGTATTTTAATAATTTTGCAAA-CTGA
1 GGGTA-TTTGGTAATTTTACAAATC-GA
60433809 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTT-GGTAATTTTACAAATCGA
* * * *
60433836 GGATATTTGGGTAATTTTATAAACCGG
1 GGGTATTT-GGTAATTTTACAAATCGA
60433863 GGGTACTTTGGTAATTTTACAA
1 GGGTA-TTTGGTAATTTTACAA
60433885 TTGGGGGTAT
Statistics
Matches: 286, Mismatches: 47, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
26 20 0.07
27 239 0.84
28 27 0.09
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (26 bp):
GGGTATTTGGTAATTTTACAAATCGA
Found at i:60454946 original size:40 final size:39
Alignment explanation
Indices: 60454828--60455044 Score: 199
Period size: 40 Copynumber: 5.5 Consensus size: 39
60454818 ACCCAAGTAT
* * * *
60454828 CTTCGGGATTTAG-CCGGATATAACCACTCGCACAAGGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAATGC
* * * * * *
60454866 CTTCAGGTCTTAGGCCGGATATGGTC-ACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCA-CAATGC
* *
60454906 CTTCAGGTCTTAGCCCGGATATAGCAACTCGCACAGATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACA-ATGC
*
60454946 CTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACCAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGCAACTCGCA-CAATGC
* * *
60454986 CTTCGGGACTTAGCCCAGA-ATTTGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGCAACTCGCAC-AATGC
60455026 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
60455045 ATTAATCACT
Statistics
Matches: 153, Mismatches: 18, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
38 10 0.07
39 18 0.12
40 123 0.80
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAATGC
Found at i:60455047 original size:40 final size:40
Alignment explanation
Indices: 60454900--60455077 Score: 232
Period size: 40 Copynumber: 4.5 Consensus size: 40
60454890 TCACTAGCAT
* * *
60454900 AAATGCCTTCAGGTCTTAGCCCGG-ATATAGCAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCAC
*
60454940 AGATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
* * *
60454980 CAATGCCTTCGGGACTTAGCCCAGAATTTGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
* * *
60455020 AAATGCCTTCGGGACTTAGCCCGGAATTAATCACTAGCAC
1 AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
* *
60455060 ACATGTCTTCGGGACTTA
1 AAATGCCTTCGGGACTTA
60455078 ACCCCGTTAG
Statistics
Matches: 121, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
40 119 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCAC
Found at i:60457153 original size:27 final size:26
Alignment explanation
Indices: 60457123--60457179 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
60457113 AATACCTTTA
* *
60457123 TAGGTGGAAAATTTACAGATTTACCCC
1 TAGGAGGAAAA-TTACAGATATACCCC
* *
60457150 TAGGAGTAAAATTACTGATATACCCC
1 TAGGAGGAAAATTACAGATATACCCC
60457176 TAGG
1 TAGG
60457180 GTTAAGGTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (26 bp):
TAGGAGGAAAATTACAGATATACCCC
Found at i:60462863 original size:29 final size:29
Alignment explanation
Indices: 60462807--60462914 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
60462797 ATGCATATAA
* * *
60462807 CCCACTAGGCCCAA-TCTTATTCAAATGG
1 CCCATTAGGCCCAATTCATATTCATATGG
* *
60462835 TCCATCT-GGCCCAATTCATATTCTTATGG
1 CCCAT-TAGGCCCAATTCATATTCATATGG
**
60462864 CCCATTAGGCCCAATTCACCTTCATATGG
1 CCCATTAGGCCCAATTCATATTCATATGG
*
60462893 CCCATTAGGCCCAAATCATATT
1 CCCATTAGGCCCAATTCATATT
60462915 ATACTCATAC
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
28 11 0.17
29 54 0.83
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.30
Consensus pattern (29 bp):
CCCATTAGGCCCAATTCATATTCATATGG
Found at i:60463165 original size:24 final size:24
Alignment explanation
Indices: 60463129--60463189 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
60463119 CGTAGCCCAA
*
60463129 CTTTT-GGTTTTTCGACATTTCAG
1 CTTTTCGGCTTTTCGACATTTCAG
* *
60463152 CTTTTCGGCTTTTCGGCATTTCGG
1 CTTTTCGGCTTTTCGACATTTCAG
60463176 CTTTTCGGCATTTT
1 CTTTTCGGC-TTTT
60463190 GGCTTTTTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
23 5 0.15
24 24 0.73
25 4 0.12
ACGTcount: A:0.08, C:0.21, G:0.20, T:0.51
Consensus pattern (24 bp):
CTTTTCGGCTTTTCGACATTTCAG
Found at i:60463197 original size:8 final size:8
Alignment explanation
Indices: 60463146--60463196 Score: 68
Period size: 8 Copynumber: 6.4 Consensus size: 8
60463136 TTTTTCGACA
*
60463146 TTTCAGCT
1 TTTCGGCT
60463154 TTTCGGCT
1 TTTCGGCT
*
60463162 TTTCGGCA
1 TTTCGGCT
60463170 TTTCGGCT
1 TTTCGGCT
60463178 TTTCGGCAT
1 TTTCGGC-T
60463187 TTT-GGCT
1 TTTCGGCT
60463194 TTT
1 TTT
60463197 TCTGATTCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
7 4 0.10
8 31 0.79
9 4 0.10
ACGTcount: A:0.06, C:0.22, G:0.22, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:60467449 original size:93 final size:93
Alignment explanation
Indices: 60467289--60467461 Score: 276
Period size: 93 Copynumber: 1.9 Consensus size: 93
60467279 CGCCCATAAG
* * *
60467289 CGAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATGAGTGAACTCGGACCCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACCCAACCCA
60467354 ACGAGTTCGGATGCCTAGTCACATCTCA
66 ACGAGTTCGGATGCCTAGTCACATCTCA
* * *
60467382 CGAACTCGGACTCAACTCAACGAGTTCG-GACATTCGCATTCATAAGTGAACTCGGACTCAACCC
1 CGAACTCGGACTCAACTCAACGAGCTCGAG-CATTCGCATCCATAAGTGAACTCGGACCCAACCC
60467446 AACGAGTTCGGATGCC
65 AACGAGTTCGGATGCC
60467462 CAAACATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACCCAACCCA
ACGAGTTCGGATGCCTAGTCACATCTCA
Found at i:60467456 original size:46 final size:47
Alignment explanation
Indices: 60467283--60467457 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 47
60467273 GTAACCCGCC
* * *
60467283 CATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATC
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATT
* * * * *
60467329 CATGAGTGAACTCGGACCCAACTCAACGAGTTCGGATGCCTAGTCACA-T
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-ATTCGCATT
*
60467378 C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCATT
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATT
* *
60467422 CATAAGTGAACTCGGACTCAACCCAACGAGTTCGGA
1 CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
60467458 TGCCCAAACA
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
44 3 0.03
45 2 0.02
46 57 0.54
47 30 0.28
48 3 0.03
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.19
Consensus pattern (47 bp):
CATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATT
Found at i:60467476 original size:46 final size:45
Alignment explanation
Indices: 60467333--60467476 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
60467323 CGCATCCATG
* * *
60467333 AGTGAACTCGGACCCAACTCAACGAGTTCGGATGCCTAGTCACATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--AACATCT
* * * ** *
60467380 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAACATCT
*
60467426 AGTGAACTCGGACTCAACCCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACAT-CT
60467472 AGTGA
1 AGTGA
60467477 CATGTCACTT
Statistics
Matches: 76, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
44 8 0.11
45 1 0.01
46 32 0.42
47 30 0.39
48 1 0.01
49 4 0.05
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCT
Found at i:60470162 original size:29 final size:28
Alignment explanation
Indices: 60470088--60470202 Score: 97
Period size: 29 Copynumber: 4.0 Consensus size: 28
60470078 TACATACATG
* *
60470088 CATATGGCCCACTAGGCCCAATCTTATT
1 CATATGGCCCACTAGGCCCATTCATATT
*
60470116 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCA-CTAGGCCCA-TTCATATT
* * **
60470145 CTTATGGCCTACTAGGCCCAATTCACCTT
1 CATATGGCCCACTAGGCCC-ATTCATATT
* * *
60470174 CAAATGGCCCATTAGGCCCAAGTCATATT
1 CATATGGCCCACTAGGCCC-ATTCATATT
60470203 ATAATCATTC
Statistics
Matches: 68, Mismatches: 15, Indels: 7
0.76 0.17 0.08
Matches are distributed among these distances:
28 18 0.26
29 49 0.72
30 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCATTCATATT
Found at i:60470192 original size:58 final size:57
Alignment explanation
Indices: 60470090--60470202 Score: 151
Period size: 58 Copynumber: 2.0 Consensus size: 57
60470080 CATACATGCA
*
60470090 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTGGCCC-AGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCTCATTCAAATGGCCCATCTGGCCCAAG-TCATATTCT
*
60470147 TATGGCCTACTAGGCCCAAT-TCACCTTCAAATGGCCCAT-TAGGCCCAAGTCATATT
1 TATGGCCCACTAGGCCCAATCTCA--TTCAAATGGCCCATCT-GGCCCAAGTCATATT
60470203 ATAATCATTC
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
56 2 0.04
57 20 0.40
58 26 0.52
59 2 0.04
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.28
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCTCATTCAAATGGCCCATCTGGCCCAAGTCATATTCT
Found at i:60470440 original size:16 final size:15
Alignment explanation
Indices: 60470418--60470469 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
60470408 CGTAGCCCAA
*
60470418 CTTTTGGCTTTTCAG
1 CTTTTGGCATTTCAG
*
60470433 CATTTTGGCATTTCAAT
1 C-TTTTGGCATTTC-AG
*
60470450 TTTTTGGCATTTCAG
1 CTTTTGGCATTTCAG
60470465 CTTTT
1 CTTTT
60470470 CATCTTTTCG
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 6 0.20
16 23 0.77
17 1 0.03
ACGTcount: A:0.13, C:0.17, G:0.15, T:0.54
Consensus pattern (15 bp):
CTTTTGGCATTTCAG
Found at i:60476969 original size:43 final size:43
Alignment explanation
Indices: 60476890--60477013 Score: 171
Period size: 43 Copynumber: 2.9 Consensus size: 43
60476880 GTAAGACCAC
* * * *
60476890 GTCTGGGACATTGGCATCG-TATTTGATTTA-GTGTAAGAACCT
1 GTCTGGGATAGTGGCATCGATGTTTGA-TTACATGTAAGAACCT
* *
60476932 GTCTGGGATAGTGGCTTCGATGTTTGATTACATGTAAGACCCT
1 GTCTGGGATAGTGGCATCGATGTTTGATTACATGTAAGAACCT
60476975 GTCTGGGATAGTGGCATCGATGTTTGATTACATGTAAGA
1 GTCTGGGATAGTGGCATCGATGTTTGATTACATGTAAGA
60477014 TCACGTCTAG
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
42 19 0.26
43 54 0.74
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (43 bp):
GTCTGGGATAGTGGCATCGATGTTTGATTACATGTAAGAACCT
Found at i:60477033 original size:43 final size:42
Alignment explanation
Indices: 60476835--60477036 Score: 164
Period size: 43 Copynumber: 4.7 Consensus size: 42
60476825 TGTGTTATCG
* * * *
60476835 TGTAAGAGCACGTCTGGGATGTTGGCATCGACT-TCTGTTTTGCG
1 TGTAAGA-CACGTCTGGGATGTTGGCATCGA-TGTTTG-ATTACA
** * *
60476879 TGTAAGACCACGTCTGGGACATTGGCATCG-TATTTGATTTA-G
1 TGTAAGA-CACGTCTGGGATGTTGGCATCGATGTTTGA-TTACA
*
60476921 TGTAAGA-ACCTGTCTGGGATAG-TGGCTTCGATGTTTGATTACA
1 TGTAAGACA-C-GTCTGGGAT-GTTGGCATCGATGTTTGATTACA
*
60476964 TGTAAGACCCTGTCTGGGATAG-TGGCATCGATGTTTGATTACA
1 TGTAAGACAC-GTCTGGGAT-GTTGGCATCGATGTTTGATTACA
*
60477007 TGTAAGATCACGTCTAGGATGTTGGCATCG
1 TGTAAGA-CACGTCTGGGATGTTGGCATCG
60477037 TATATGCTTT
Statistics
Matches: 133, Mismatches: 15, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 28 0.21
43 74 0.56
44 29 0.22
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (42 bp):
TGTAAGACACGTCTGGGATGTTGGCATCGATGTTTGATTACA
Found at i:60489470 original size:88 final size:88
Alignment explanation
Indices: 60489321--60489510 Score: 281
Period size: 88 Copynumber: 2.2 Consensus size: 88
60489311 GTGCAGGGCT
* * *
60489321 CACACGCCCGTGTGTTCCAAGGGACACTCCTGTGCTAGAGGCCGTGTTCGACCCCGTGTAACTCT
1 CACACGCCCGTGTGGTCCAAGGGACACGCCTGTGCTAGAGACCGTGTTCGACCCCGTGTAACTCT
60489386 CTAACTTGAACACATGGCAATGC
66 CTAACTTGAACACATGGCAATGC
* * * *
60489409 CACACGCCCGTGTGGTCTAAGGGACACGCTTGTTCTAGAGACTGTGTTCGACCCCGTGTAACTCT
1 CACACGCCCGTGTGGTCCAAGGGACACGCCTGTGCTAGAGACCGTGTTCGACCCCGTGTAACTCT
* *
60489474 CTGACTTGAACACATGGCCATGC
66 CTAACTTGAACACATGGCAATGC
* *
60489497 CACACACCCATGTG
1 CACACGCCCGTGTG
60489511 CAAGGCCATG
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 91 1.00
ACGTcount: A:0.22, C:0.32, G:0.24, T:0.23
Consensus pattern (88 bp):
CACACGCCCGTGTGGTCCAAGGGACACGCCTGTGCTAGAGACCGTGTTCGACCCCGTGTAACTCT
CTAACTTGAACACATGGCAATGC
Found at i:60493528 original size:46 final size:46
Alignment explanation
Indices: 60493427--60493731 Score: 202
Period size: 47 Copynumber: 6.5 Consensus size: 46
60493417 TTGTGTGTGG
* *
60493427 GCCAATGTAAGACCATGTCTGGGACATGGCATCGG-T-ATTGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTCATT--GATGAGA
* *
60493475 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCTACATT-ATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCT-CATTGATGAGA
* *
60493521 GCCAGTGTAAGACCATGTCTAGGACATGGCATTGG--CATTGA-GACGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTCATTGATGA-GA
* *
60493567 GTGCTAGTGTAAGACATGTTTGGGACATGCATCGGC-C-TTGAGTCGTA-A
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCATTGA-T-G-AGA
* * * *
60493615 GCCTGTGTAAGACATGTCTGGGACATGCATCGGCT-ATGAGACGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCAT-TGATGAGA
* ** * * *
60493661 GTCAGTGTAAGACCATGTCTGGCTCATGGCATCGACT--TGCGATGTGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTCAT-TGATGAGA
60493708 GCCAGTGTAAGACCATGTCTGGGA
1 GCCAGTGTAAGA-CATGTCTGGGA
60493732 TATAACATCG
Statistics
Matches: 210, Mismatches: 27, Indels: 41
0.76 0.10 0.15
Matches are distributed among these distances:
45 7 0.03
46 79 0.38
47 81 0.39
48 38 0.18
49 4 0.02
50 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCATTGATGAGA
Found at i:60493623 original size:94 final size:93
Alignment explanation
Indices: 60493427--60493731 Score: 331
Period size: 94 Copynumber: 3.3 Consensus size: 93
60493417 TTGTGTGTGG
* * *
60493427 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGATGAGTGCTAGTGTAAGACATGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGT
*
60493492 CTAGGACATGCATCGGCTACATT-A-TG-AGA
66 CTGGGACATGCATCGGC--C-TTGAGTGTA-A
* *
60493521 GCCAGTGTAAGACCATGTCTAGGACATGGCATTGGCATTGAGACGAGTGCTAGTGTAAGACATGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGT
*
60493586 TTGGGACATGCATCGGCCTTGAGTCGTAA
66 CTGGGACATGCATCGGCCTTGAGT-GTAA
*
60493615 GCCTGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TATGAGACGA-TAG-TCAGTGTAAGACC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGACGAGT-GCT-AGTGTAAGA-C
** * * *
60493675 ATGTCTGGCTCATGGCATC-GACTTGCGATGTGA
62 ATGTCTGGGACAT-GCATCGGCCTTGAG-TGTAA
60493708 GCCAGTGTAAGACCATGTCTGGGA
1 GCCAGTGTAAGACCATGTCTGGGA
60493732 TATAACATCG
Statistics
Matches: 183, Mismatches: 17, Indels: 22
0.82 0.08 0.10
Matches are distributed among these distances:
91 5 0.03
92 27 0.15
93 45 0.25
94 105 0.57
95 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (93 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTGCTAGTGTAAGACATGT
CTGGGACATGCATCGGCCTTGAGTGTAA
Found at i:60493725 original size:140 final size:142
Alignment explanation
Indices: 60493422--60493731 Score: 339
Period size: 140 Copynumber: 2.2 Consensus size: 142
60493412 GTCATTTGTG
* * * *
60493422 TGTGGGCCAATGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGATGAGTGCTAGTGTAAGA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGTCCTAGTGTAAGA
* *
60493487 CATGTCTAGGACATGCATCGGCTACATTATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCA
66 CATGTCTAGGACATGCATCGGCTACATGACGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCA
* *
60493552 TTGGCATTGAGA
131 TCGACATTGAGA
* * * * * *
60493564 CGAGTGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTTGAG-TCGTAAG-CCT-GTGTA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAT-G--AGTCCTAGTGTA
* * * * *
60493624 AGACATGTCTGGGACATGCATCGGCTATGA-GACGATAGTCAGTGTAAGACCATGTCT-GGCTCA
63 AGACATGTCTAGGACATGCATCGGCTA-CATGACGAGAGCCAGTGTAAGACCATGTCTAGG-ACA
*
60493687 TGGCATCGAC-TTGCGA
126 TGGCATCGACATTGAGA
60493703 TGTGAGCCAGTGTAAGACCATGTCTGGGA
1 TGTGAGCCAGTGTAAGACCATGTCTGGGA
60493732 TATAACATCG
Statistics
Matches: 138, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
139 21 0.15
140 87 0.63
141 16 0.12
142 14 0.10
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.25
Consensus pattern (142 bp):
TGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGTCCTAGTGTAAGA
CATGTCTAGGACATGCATCGGCTACATGACGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCA
TCGACATTGAGA
Found at i:60496921 original size:41 final size:40
Alignment explanation
Indices: 60496870--60497089 Score: 262
Period size: 41 Copynumber: 5.4 Consensus size: 40
60496860 GCGTTTTACC
* * * * *
60496870 AAAAACGCCGCTAAAAACGGAGCAATACCGGCGTTTTTTGTT
1 AAAAA-GCCGCTAAAAACAGAGCATTAGCGGCG-CTTTTGGT
* * *
60496912 AAAAAGCCGCTAAAAACAAAGAAATAGCGGCGCTTTTGGT
1 AAAAAGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
*
60496952 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAAAGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
* * *
60496993 AAAACGCCGCTATAAACCAGAGCATTAGCGGCGCTTTTTGT
1 AAAAAGCCGCTA-AAAACAGAGCATTAGCGGCGCTTTTGGT
60497034 AAAACA-CCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAA-AGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
*
60497075 AAAACGCCGCTAAAA
1 AAAAAGCCGCTAAAA
60497090 GTCATATAAC
Statistics
Matches: 157, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
40 24 0.15
41 125 0.80
42 8 0.05
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (40 bp):
AAAAAGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGT
Found at i:60497038 original size:82 final size:81
Alignment explanation
Indices: 60496871--60497089 Score: 305
Period size: 82 Copynumber: 2.7 Consensus size: 81
60496861 CGTTTTACCA
* * * * * *
60496871 AAAACGCCGCTAAAAA-CGGAGCAATACCGGCGTTTTTTGTTAAAAAGCCGCTAAAAACAAAGAA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCG-CTTTTGGTAAAACGCCGCTAAAAACAAAGAA
60496935 ATAGCGGCGCTTTTGGT
65 ATAGCGGCGCTTTTGGT
* * *
60496952 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTATAAACCAGAGCA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA-AAAACAAAGAA
* *
60497017 TTAGCGGCGCTTTTTGT
65 ATAGCGGCGCTTTTGGT
*
60497034 AAAACACCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
60497090 GTCATATAAC
Statistics
Matches: 124, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
81 36 0.29
82 88 0.71
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (81 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACAAAGAAA
TAGCGGCGCTTTTGGT
Found at i:60497678 original size:7 final size:7
Alignment explanation
Indices: 60497668--60497725 Score: 71
Period size: 7 Copynumber: 8.3 Consensus size: 7
60497658 GATTTAAGGT
*
60497668 TTAGGTG
1 TTAGGGG
*
60497675 TTAGGTG
1 TTAGGGG
60497682 TTAGGGG
1 TTAGGGG
60497689 TTAGGGG
1 TTAGGGG
60497696 TTAGGGG
1 TTAGGGG
*
60497703 TTAGAGG
1 TTAGGGG
*
60497710 TTAAGGG
1 TTAGGGG
*
60497717 TTAAGGG
1 TTAGGGG
60497724 TT
1 TT
60497726 CATGATTCAG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 47 1.00
ACGTcount: A:0.19, C:0.00, G:0.47, T:0.34
Consensus pattern (7 bp):
TTAGGGG
Found at i:60497725 original size:14 final size:14
Alignment explanation
Indices: 60497648--60497725 Score: 63
Period size: 14 Copynumber: 5.6 Consensus size: 14
60497638 TAAGTGTGGT
**
60497648 TTAAGGGTT-GGAT
1 TTAAGGGTTAGGGG
* *
60497661 TTAAGGTTTAGGTG
1 TTAAGGGTTAGGGG
60497675 TT-AGGTGTTAGGGG
1 TTAAGG-GTTAGGGG
*
60497689 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
*
60497703 TT-AGAGGTTAAGGG
1 TTAAG-GGTTAGGGG
60497717 TTAAGGGTT
1 TTAAGGGTT
60497726 CATGATTCAG
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
13 12 0.23
14 36 0.69
15 4 0.08
ACGTcount: A:0.21, C:0.00, G:0.44, T:0.36
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:60497784 original size:7 final size:7
Alignment explanation
Indices: 60497660--60497784 Score: 56
Period size: 7 Copynumber: 17.6 Consensus size: 7
60497650 AAGGGTTGGA
*
60497660 TTTAAGG
1 TTTAGGG
60497667 TTTA-GG
1 TTTAGGG
60497673 TGTTA-GG
1 T-TTAGGG
60497680 TGTTAGGG
1 T-TTAGGG
*
60497688 GTTAGGG
1 TTTAGGG
*
60497695 GTTAGGG
1 TTTAGGG
*
60497702 GTTAGAGG
1 TTTAG-GG
*
60497710 TTAAGGG
1 TTTAGGG
*
60497717 TTAAGGG
1 TTTAGGG
* * *
60497724 TTCATGA
1 TTTAGGG
*
60497731 TTCAGGG
1 TTTAGGG
* *
60497738 TTTATGT
1 TTTAGGG
*
60497745 TTTAGGA
1 TTTAGGG
*
60497752 TTTATGG
1 TTTAGGG
60497759 TTTAGGG
1 TTTAGGG
* *
60497766 ATTAGGAA
1 TTTAGG-G
60497774 TTTAGGG
1 TTTAGGG
60497781 TTTA
1 TTTA
60497785 AATTAATTAG
Statistics
Matches: 94, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
6 3 0.03
7 79 0.84
8 12 0.13
ACGTcount: A:0.22, C:0.02, G:0.37, T:0.40
Consensus pattern (7 bp):
TTTAGGG
Found at i:60502979 original size:19 final size:19
Alignment explanation
Indices: 60502957--60502997 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
60502947 TTTATTGATA
60502957 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
60502975 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
60502994 TTTT
1 TTTT
60502998 GATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:60503360 original size:12 final size:12
Alignment explanation
Indices: 60503343--60503370 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
60503333 CTTTAGCGGC
60503343 GGCGGAAACAGA
1 GGCGGAAACAGA
60503355 GGCGGAAACAGA
1 GGCGGAAACAGA
60503367 GGCG
1 GGCG
60503371 TTTTTAGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.18, G:0.46, T:0.00
Consensus pattern (12 bp):
GGCGGAAACAGA
Found at i:60507391 original size:25 final size:27
Alignment explanation
Indices: 60507345--60507400 Score: 71
Period size: 25 Copynumber: 2.1 Consensus size: 27
60507335 TTTAATTAAT
*
60507345 AAAAATTATTAATGATTCAAT-AAATTA
1 AAAAATTA-TAATAATTCAATAAAATTA
*
60507372 AAAAATTA-AATAATTGAATAAAATTA
1 AAAAATTATAATAATTCAATAAAATTA
60507398 AAA
1 AAA
60507401 TTTAGGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 9 0.35
26 9 0.35
27 8 0.31
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (27 bp):
AAAAATTATAATAATTCAATAAAATTA
Found at i:60509333 original size:46 final size:46
Alignment explanation
Indices: 60509266--60509441 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
60509256 TGTAACCCGC
*
60509266 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * *
60509312 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCAT
* *** * *
60509358 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
60509405 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
60509442 TGCCCAAACA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 72 0.67
47 35 0.33
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:60509386 original size:93 final size:93
Alignment explanation
Indices: 60509274--60509445 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
60509264 GCCCATAAGT
* * *
60509274 GAACTCGGACTCAACTCAACGAGCTCGGCCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
60509339 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
60509367 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
*
60509432 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
60509446 CAAACATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:60510579 original size:29 final size:30
Alignment explanation
Indices: 60510522--60510579 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
60510512 CTTTTGAAAA
* * *
60510522 TATTGACAAAAAGAGGCATCTAATTTTTAT
1 TATTGACAAAAAGAGGCAACCAAATTTTAT
*
60510552 TATTTACAAAAAGA-GCAACCAAATTTTA
1 TATTGACAAAAAGAGGCAACCAAATTTTA
60510580 AAAATAATTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (30 bp):
TATTGACAAAAAGAGGCAACCAAATTTTAT
Found at i:60521107 original size:22 final size:22
Alignment explanation
Indices: 60521079--60521200 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
60521069 TTCCACATCC
60521079 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
60521101 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
60521125 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
60521148 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
60521172 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
60521195 ATCACA
1 ATCACA
60521201 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:60521366 original size:49 final size:47
Alignment explanation
Indices: 60521051--60521649 Score: 891
Period size: 47 Copynumber: 12.6 Consensus size: 47
60521041 CCCTTCGGGA
* * *
60521051 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
60521098 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
60521145 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
60521192 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
60521239 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
60521286 CTTATCTCATATATGCA-TGTTCTCATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
60521333 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
60521382 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
60521429 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
60521478 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
60521525 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
60521574 CTTATCACATATTTATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATA--TATACACTTTCACATTCATCACATTGGCCATTCGGC
60521623 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
60521650 TATTCAAATA
Statistics
Matches: 516, Mismatches: 26, Indels: 20
0.92 0.05 0.04
Matches are distributed among these distances:
46 1 0.00
47 334 0.65
49 180 0.35
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:60521395 original size:96 final size:96
Alignment explanation
Indices: 60521051--60521649 Score: 898
Period size: 96 Copynumber: 6.3 Consensus size: 96
60521041 CCCTTCGGGA
* *
60521051 CTTATCACAT-T-TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
60521114 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
* * * *
60521145 CTTATCTC--ATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACA
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
*
60521207 CA-TGTTCACATTCATCACATTGGCCATTCGGC
65 CACT-TTCACATTCATCACATTGGCCATTAGGC
* * * *
60521239 CTTATCAC--ACATACACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATG
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
* *
60521301 CA-TGTTCTCATTCATCACATTGGCCATTCGGC
65 CACT-TTCACATTCATCACATTGGCCATTAGGC
*
60521333 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCAGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
60521398 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
60521429 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
60521494 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTAGGC
*
60521525 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATTTAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA--TAT
60521590 ACACTTTCACATTCATCACATTGGCCATTAGGC
64 ACACTTTCACATTCATCACATTGGCCATTAGGC
60521623 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
60521650 TATTCAAATA
Statistics
Matches: 469, Mismatches: 26, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
93 3 0.01
94 174 0.37
96 247 0.53
97 2 0.00
98 43 0.09
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:60521552 original size:40 final size:42
Alignment explanation
Indices: 60521507--60521648 Score: 121
Period size: 49 Copynumber: 3.1 Consensus size: 42
60521497 TTCACATTCA
60521507 TCACAT-C-GGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATACTGGCCATTAGGCCTTATCACATATATATACACTT
*
60521547 TCACATTCATCACATTGGCCATTAGGCCTTATCACATATTTATACACTT
1 T--CA--CAT-AC--TGGCCATTAGGCCTTATCACATATATATACACTT
60521596 TCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTT
1 T--CA--CAT-AC--TGGCCATTAGGCCTTATCACATATATATACACTT
60521643 TCACAT
1 TCACAT
60521649 TTATTCAAAT
Statistics
Matches: 91, Mismatches: 2, Indels: 15
0.84 0.02 0.14
Matches are distributed among these distances:
40 1 0.01
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 1 0.01
47 12 0.13
49 67 0.74
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (42 bp):
TCACATACTGGCCATTAGGCCTTATCACATATATATACACTT
Found at i:60523163 original size:56 final size:56
Alignment explanation
Indices: 60523096--60523215 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
60523086 TATTAGTTTA
60523096 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
60523152 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
60523208 TTGCCCAT
1 TTGCCCAT
60523216 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:60524528 original size:40 final size:40
Alignment explanation
Indices: 60524496--60524795 Score: 306
Period size: 40 Copynumber: 7.6 Consensus size: 40
60524486 CCAGCATGAT
* * * *
60524496 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
60524536 TGCTCTT-GGGGTTTAGCACGG-TATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
60524574 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
60524614 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
60524654 TGCTCTTCGGAACTTAGCCCGGATACATCACTAACATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
60524694 TGCTCTTCGGGACTTAGCCCGGTTATAGTAACTCA-CACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACT-AGCACGAA
* * ** * * *
60524735 TGC-CTTCGGGACTTAACCCAGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAA
60524775 TGC-CTTCGGG-CTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
60524796 ATTAGTAACT
Statistics
Matches: 222, Mismatches: 33, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
38 22 0.10
39 29 0.13
40 159 0.72
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:60524742 original size:80 final size:80
Alignment explanation
Indices: 60524496--60524829 Score: 299
Period size: 80 Copynumber: 4.2 Consensus size: 80
60524486 CCAGCATGAT
* * * * * * ** *
60524496 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTT-GGGGTTTAGCACGGTAT
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTAT
* *
60524560 A-TCACT-AGCACGAA
66 AGTAACTCA-CACAAA
*
60524574 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTTGGGACTTAGCCCGG-AT
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTAT
* * *
60524638 ACATCACT-AGCACGAA
66 A-GTAACTCA-CACAAA
*
60524654 TGCTCTTCGGAACTTAGCCCGGATACATCACTAACATGAATGCTCTTCGGGACTTAGCCCGGTTA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGG-TA
60524719 TAGTAACTCACACAAA
65 TAGTAACTCACACAAA
* * * ** * * ** *
60524735 TGC-CTTCGGGACTTAACCCAGATTTAGTAACTCGCACCAATGC-CTTCGGG-CTTAGCCCGGAA
1 TGCTCTTCGGAACTTAGCCCGGATACA-TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTA
*
60524797 TTAGTAACTCGCACAAA
65 -TAGTAACTCACACAAA
*
60524814 TGC-CTTCGGATCTTAG
1 TGCTCTTCGGAACTTAG
60524830 TCCAGATATG
Statistics
Matches: 219, Mismatches: 29, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
78 45 0.21
79 49 0.22
80 98 0.45
81 23 0.11
82 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGTAT
AGTAACTCACACAAA
Found at i:60524808 original size:39 final size:40
Alignment explanation
Indices: 60524567--60524871 Score: 201
Period size: 40 Copynumber: 7.6 Consensus size: 40
60524557 TATATCACTA
* * ** * *
60524567 GCACGAATGCTCTTCGGAACTTAGCCCGGATACA-TCACTA
1 GCACAAATGC-CTTCGGGACTTAGCCCGGATTTAGTAACTC
** * ** * *
60524607 GCATGAATGCTCTTTGGGACTTAGCCCGGATACA-TCACTA
1 GCACAAATGC-CTTCGGGACTTAGCCCGGATTTAGTAACTC
* * ** * *
60524647 GCACGAATGCTCTTCGGAACTTAGCCCGGATACA-TCACTA
1 GCACAAATGC-CTTCGGGACTTAGCCCGGATTTAGTAACTC
* **
60524687 ACATGAATGCTCTTCGGGACTTAGCCCGG-TTATAGTAACTC
1 GCACAAATGC-CTTCGGGACTTAGCCCGGATT-TAGTAACTC
* * *
60524728 ACACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTC
* *
60524768 GCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTC
* * * * * *
60524807 GCACAAATGCCTTC-GGATCTTAGTCCAGATATGGTCACTTA
1 GCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TC
60524848 GCACAAA-GCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGACTTAGCC
60524872 TGGACATCAT
Statistics
Matches: 227, Mismatches: 31, Indels: 14
0.83 0.11 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.15
40 167 0.74
41 25 0.11
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTC
Found at i:60524859 original size:79 final size:80
Alignment explanation
Indices: 60524698--60524871 Score: 212
Period size: 79 Copynumber: 2.2 Consensus size: 80
60524688 CATGAATGCT
* *
60524698 CTTCGGGACTTAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCAGATTTAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCAGATATAGT
* *
60524763 AACTCGCACCAATGC
66 AACTAGCACCAAAGC
* ** *
60524778 CTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCAGATATG
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCAGATATA
*
60524840 GTCACTTAGCA-CAAAGC
64 GTAAC-TAGCACCAAAGC
60524857 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
60524872 TGGACATCAT
Statistics
Matches: 81, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 4 0.05
79 59 0.73
80 18 0.22
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCAGATATAGT
AACTAGCACCAAAGC
Found at i:60527219 original size:47 final size:47
Alignment explanation
Indices: 60527156--60527747 Score: 919
Period size: 47 Copynumber: 12.6 Consensus size: 47
60527146 CCCTTCGGGA
* * *
60527156 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
60527203 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
60527250 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
60527297 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
60527344 CTTATCAC--ATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
60527389 CTTATCACATATAT-CA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
60527435 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
60527484 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
60527531 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
60527578 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
60527625 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
60527674 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
60527721 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
60527748 TATTCAAATA
Statistics
Matches: 523, Mismatches: 13, Indels: 18
0.94 0.02 0.03
Matches are distributed among these distances:
45 45 0.09
46 41 0.08
47 346 0.66
48 6 0.01
49 84 0.16
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:60527683 original size:22 final size:22
Alignment explanation
Indices: 60527655--60527730 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
60527645 TTTCACATTC
60527655 ATCACATTGGCCATTAGGCCTT
1 ATCACATTGGCCATTAGGCCTT
*** *** *
60527677 ATCACATATATACACTTTCACATT
1 ATCACAT-TGGCCA-TTAGGCCTT
60527701 CATCACATTGGCCATTAGGCCTT
1 -ATCACATTGGCCATTAGGCCTT
60527724 ATCACAT
1 ATCACAT
60527731 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTAGGCCTT
Found at i:60529276 original size:54 final size:56
Alignment explanation
Indices: 60529194--60529311 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 56
60529184 TATTAGTTTA
60529194 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACAC-A-ATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
60529248 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
60529304 TTGCCCAT
1 TTGCCCAT
60529312 CATCCCTTGT
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
54 35 0.57
55 1 0.02
56 25 0.41
ACGTcount: A:0.22, C:0.23, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:60532085 original size:49 final size:49
Alignment explanation
Indices: 60532013--60532196 Score: 208
Period size: 49 Copynumber: 3.7 Consensus size: 49
60532003 TGAGGTCACG
* *
60532013 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTGGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTGGCA
* * * * * *
60532062 TGTGTAGTGCTAAGTGCAGGCTACTATACGTACCCGAAAACT-GTGATCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTG-GCA
* * * * *
60532111 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATATTATTGGTCGCA
1 --TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTGGCA
*
60532162 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
60532197 AATAGCTTCG
Statistics
Matches: 110, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
48 3 0.03
49 70 0.64
51 35 0.32
52 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGGTGGCA
Found at i:60532185 original size:100 final size:100
Alignment explanation
Indices: 60532008--60532195 Score: 304
Period size: 100 Copynumber: 1.9 Consensus size: 100
60531998 TATTGTGAGG
* * * *
60532008 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTGGCATGTGTAGTGCT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
60532073 AAGTGCAGGCTACTATACGTACCCGAAAACTGTGA
66 AAGTGCAAGCTACTATACGTACCCGAAAACTGTGA
* *
60532108 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
*
60532173 AAGTGCAAGCTACTATGCGTACC
66 AAGTGCAAGCTACTATACGTACC
60532196 AAATAGCTTC
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 80 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAAGCTACTATACGTACCCGAAAACTGTGA
Found at i:60535856 original size:5 final size:5
Alignment explanation
Indices: 60535842--60535880 Score: 71
Period size: 5 Copynumber: 8.0 Consensus size: 5
60535832 TTTAACTATG
60535842 TAAAA T-AAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
60535881 AGAAGCACAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.12
5 29 0.88
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:60543201 original size:42 final size:42
Alignment explanation
Indices: 60543142--60543272 Score: 145
Period size: 42 Copynumber: 3.0 Consensus size: 42
60543132 CTCGGTTTGT
* *
60543142 GATTTCATGTAAGACCATATCTGGGATATGGCATTGATATGA
1 GATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATGA
* *
60543184 GATTTCGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGACGTGA
1 GATTTCGTGTAAGACCATATCTGGGATATGGCATC-G-A-T-A--TGA
* * *
60543232 GATTTCGTATAAGACCATATATGGGATATGACATCGATATG
1 GATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATG
60543273 TAGACCCATT
Statistics
Matches: 74, Mismatches: 9, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
42 33 0.45
43 1 0.01
44 2 0.03
45 2 0.03
46 2 0.03
47 1 0.01
48 33 0.45
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATGA
Found at i:60543215 original size:90 final size:90
Alignment explanation
Indices: 60543100--60543310 Score: 219
Period size: 90 Copynumber: 2.3 Consensus size: 90
60543090 ATGTGTGCCA
* * * *** * * *
60543100 GTGTAAGACCATATCTGGGATATGGCGTTGGC-CTCGGTTTGTGATTTCATGTAAGACCATATCT
1 GTGTAAGACCATGTCTGGGACATGGCATTGGCACT-GACGTGAGATTTCATATAAGACCATATAT
* * **
60543164 GGGATATGGCATTGATATG-AGATTTC
65 GGGATATGACATCGATATGTAGA-CCC
* *
60543190 GTGTAAGACCATGTCTGGGACATGGCATCGGCACTGACGTGAGATTTCGTATAAGACCATATATG
1 GTGTAAGACCATGTCTGGGACATGGCATTGGCACTGACGTGAGATTTCATATAAGACCATATATG
60543255 GGATATGACATCGATATGTAGACCC
66 GGATATGACATCGATATGTAGACCC
* * * *
60543280 ATTTAAAACCATGTCTGGGACATGGCTTTGG
1 GTGTAAGACCATGTCTGGGACATGGCATTGG
60543311 AATTCTATAT
Statistics
Matches: 99, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
90 94 0.95
91 5 0.05
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (90 bp):
GTGTAAGACCATGTCTGGGACATGGCATTGGCACTGACGTGAGATTTCATATAAGACCATATATG
GGATATGACATCGATATGTAGACCC
Found at i:60548896 original size:42 final size:43
Alignment explanation
Indices: 60548790--60548943 Score: 143
Period size: 43 Copynumber: 3.6 Consensus size: 43
60548780 TGTGTTTTCG
** * * * **
60548790 TGTAAGATAACGTCTAGGACATTGGCATCGACT-TATGATTTATG
1 TGTAAGACCACGTCTAGGACATTGGAATC-AATATTTGA-TTACA
* *
60548834 TGTAAGACCACGTCTGGGACATTGGAATC-ATATTTGATTTCA
1 TGTAAGACCACGTCTAGGACATTGGAATCAATATTTGATTACA
* * *
60548876 TGTAAGACC-CTGTCTAGGACACTAGCATCAATATTTGATTACA
1 TGTAAGACCAC-GTCTAGGACATTGGAATCAATATTTGATTACA
*
60548919 TGTAAGACCACGTCTAGGACGTTGG
1 TGTAAGACCACGTCTAGGACATTGG
60548944 CATTGTACGA
Statistics
Matches: 89, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.01
42 26 0.29
43 36 0.40
44 26 0.29
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACATTGGAATCAATATTTGATTACA
Found at i:60559556 original size:51 final size:51
Alignment explanation
Indices: 60559444--60559585 Score: 162
Period size: 51 Copynumber: 2.8 Consensus size: 51
60559434 ATGCATACCC
* * * *
60559444 GATAGCTTCGATCACATGTGTGGTATTAAGTGCAGGCCACTATGTGTAAGA
1 GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTATGTGTAAGA
* * * *
60559495 GATGGTTTTGATCACAAGTGTGGTACTATGTGAAGGCCACTTTGTG-AAGAA
1 GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTATGTGTAAG-A
* *
60559546 GGTAGCTTTGA-CTACAAGGGTGGTACTATGTGCAGGCCAC
1 GATAGCTTTGATC-ACAAGTGTGGTACTATGTGCAGGCCAC
60559586 CGGGTATCCG
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
50 4 0.05
51 72 0.95
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (51 bp):
GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACTATGTGTAAGA
Found at i:60585505 original size:30 final size:30
Alignment explanation
Indices: 60585469--60585529 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
60585459 CATATACATC
*
60585469 AAGTAAGGATAGATGAGCTCATCATGTAAT
1 AAGTAAGGATAGATGAGCTCATCATGCAAT
60585499 AAGTAAGGATAGATGAGCTCATCATGCAAT
1 AAGTAAGGATAGATGAGCTCATCATGCAAT
60585529 A
1 A
60585530 CTCTTTCAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25
Consensus pattern (30 bp):
AAGTAAGGATAGATGAGCTCATCATGCAAT
Found at i:60595198 original size:40 final size:40
Alignment explanation
Indices: 60595053--60595235 Score: 316
Period size: 39 Copynumber: 4.6 Consensus size: 40
60595043 CGGATGATAA
* *
60595053 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
60595092 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
60595132 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
60595171 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
60595211 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
60595236 AGCAAGTAGT
Statistics
Matches: 137, Mismatches: 5, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
39 73 0.53
40 64 0.47
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:60595257 original size:79 final size:80
Alignment explanation
Indices: 60595049--60595267 Score: 322
Period size: 79 Copynumber: 2.8 Consensus size: 80
60595039 TATTCGGATG
*
60595049 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATATTCGGGCTAAGTCCCGAAGGC
60595112 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * *
60595128 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATTCGGGCTAAGTCCCGAAGGC
60595191 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * *
60595207 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATATTC-GGCTAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATTCGGGCTAAGTCCCGAAG
60595268 ATGCTTGGGT
Statistics
Matches: 126, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
78 21 0.17
79 82 0.65
80 23 0.18
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATTCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:60595532 original size:22 final size:21
Alignment explanation
Indices: 60595491--60595534 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
60595481 GAATGTGCAT
60595491 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
60595513 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
60595535 GAAACTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:60602588 original size:14 final size:15
Alignment explanation
Indices: 60602560--60602588 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
60602550 GTTTAAGTGC
60602560 TTAGTTAATTGATAT
1 TTAGTTAATTGATAT
60602575 TTAGTTAA-TGATAT
1 TTAGTTAATTGATAT
60602589 GTGTATTCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (15 bp):
TTAGTTAATTGATAT
Found at i:60604737 original size:28 final size:28
Alignment explanation
Indices: 60604672--60604822 Score: 205
Period size: 28 Copynumber: 5.4 Consensus size: 28
60604662 GAGATTGGCG
* * * *
60604672 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
60604701 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* * *
60604729 CTAAGTGTGTGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
60604757 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
60604785 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
60604812 CTGAGTGTGCG
1 CTAAGTGTGCG
60604823 GACTTAATAT
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
27 24 0.22
28 72 0.65
29 15 0.14
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:60606665 original size:40 final size:40
Alignment explanation
Indices: 60606610--60606714 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
60606600 CGGATGATAA
*
60606610 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
60606650 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
60606690 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
60606715 AGCAAGTAGT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
40 61 0.98
41 1 0.02
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:60606729 original size:40 final size:39
Alignment explanation
Indices: 60606610--60606746 Score: 161
Period size: 40 Copynumber: 3.5 Consensus size: 39
60606600 CGGATGATAA
* *
60606610 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ATTATA-T
* *
60606650 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TATTATAT
*
60606690 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTA-TTATAT
* *
60606730 TC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAG
60606747 ATGCTTGGGT
Statistics
Matches: 88, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
39 16 0.18
40 70 0.80
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTATTATAT
Found at i:60607014 original size:22 final size:21
Alignment explanation
Indices: 60606973--60607016 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
60606963 GAATGTGCAT
60606973 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
60606995 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
60607017 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:60609248 original size:46 final size:46
Alignment explanation
Indices: 60609192--60609320 Score: 188
Period size: 46 Copynumber: 2.8 Consensus size: 46
60609182 TGGTTGAGCA
* *
60609192 TCCGAACTCGTTGAGTTGAGTCCGAGTTCTCTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
60609238 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
60609284 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60609321 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
45 2 0.03
46 73 0.97
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:60614079 original size:16 final size:17
Alignment explanation
Indices: 60614053--60614085 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
60614043 ATACCAATAC
60614053 CATATCAACATTTATCA
1 CATATCAACATTTATCA
60614070 CATA-CAACATTTATCA
1 CATATCAACATTTATCA
60614086 TGCCATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.33
Consensus pattern (17 bp):
CATATCAACATTTATCA
Found at i:60615708 original size:42 final size:42
Alignment explanation
Indices: 60615607--60615764 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 42
60615597 ATGTGATCTT
* *
60615607 GTGTAAGACCATGTTTGGGACATTGGCATCG-ATTTGAGATTTAC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGTATTT--GATTT-C
*
60615651 GTGTAAGACCATGTCTGGGACGTCGGCATCGTATTTGATTTC
1 GTGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTTC
* * *
60615693 GTGTAAGACCCTGTCTGGGACAG-TGGCATCGATATCTGATTAC
1 GTGTAAGACCATGTCTGGGAC-GTTGGCATCG-TATTTGATTTC
* *
60615736 ATGTAAGACCACT-TCTAGGACGTTGGCAT
1 GTGTAAGACCA-TGTCTGGGACGTTGGCAT
60615765 TGTACGAGTT
Statistics
Matches: 99, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
42 29 0.29
43 37 0.37
44 29 0.29
45 4 0.04
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATGTCTGGGACGTTGGCATCGTATTTGATTTC
Found at i:60622871 original size:42 final size:44
Alignment explanation
Indices: 60622810--60622915 Score: 130
Period size: 42 Copynumber: 2.5 Consensus size: 44
60622800 GATTTGAGAT
*
60622810 TTACATGTAAGACCATGTCTGAGAA-A-TCGGCATCG-TATTTGA
1 TTACATGTAAGACCATGTCTGAGAAGAGT-GGCACCGATATTTGA
* * *
60622852 TTTCGTGTAAGACCCTGTCT-AGAAGAGTGGCACCGATATTTGA
1 TTACATGTAAGACCATGTCTGAGAAGAGTGGCACCGATATTTGA
*
60622895 TTACATGTAAGAGCATGTCTG
1 TTACATGTAAGACCATGTCTG
60622916 GGACATTGGC
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
41 4 0.08
42 24 0.46
43 24 0.46
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (44 bp):
TTACATGTAAGACCATGTCTGAGAAGAGTGGCACCGATATTTGA
Found at i:60622926 original size:43 final size:42
Alignment explanation
Indices: 60622810--60622926 Score: 119
Period size: 43 Copynumber: 2.8 Consensus size: 42
60622800 GATTTGAGAT
* * *
60622810 TTACATGTAAGACCATGTCTGAGAAATCGGCATCGTATTTGA
1 TTACATGTAAGACCATGTCTGGGAAATTGGCACCGTATTTGA
* * * * *
60622852 TTTCGTGTAAGACCCTGTCT-AGAAGAGTGGCACCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGAA-ATTGGCACCG-TATTTGA
* *
60622895 TTACATGTAAGAGCATGTCTGGGACATTGGCA
1 TTACATGTAAGACCATGTCTGGGAAATTGGCA
60622927 TTGTACGAGT
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
41 4 0.07
42 24 0.41
43 29 0.49
44 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGAAATTGGCACCGTATTTGA
Found at i:60623236 original size:40 final size:40
Alignment explanation
Indices: 60623192--60623270 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
60623182 TTATGTGATA
60623192 TGTTTATTTGTATATGGCTTACTAAGCTTTTGATAACTTT
1 TGTTTATTTGTATATGGCTTACTAAGCTTTTGATAACTTT
60623232 TGTTTATTTGTATATGGCTTACTAAGCTTTTGATAACTT
1 TGTTTATTTGTATATGGCTTACTAAGCTTTTGATAACTT
60623271 ACTTTGTGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.23, C:0.10, G:0.15, T:0.52
Consensus pattern (40 bp):
TGTTTATTTGTATATGGCTTACTAAGCTTTTGATAACTTT
Found at i:60624789 original size:43 final size:42
Alignment explanation
Indices: 60624699--60624789 Score: 103
Period size: 43 Copynumber: 2.1 Consensus size: 42
60624689 AAGATTATGC
* * * *
60624699 CTGGGACATTAGCATCGTATTTGATTTCGTGTAAGACCCTGT
1 CTGGGACAGTAGCATCGTATTTGATTACATGTAAGACCCTAT
* *
60624741 TTGGGACAGTGGCATCGATATTTGATTACATGTAAGACCAC-AT
1 CTGGGACAGTAGCATCG-TATTTGATTACATGTAAGACC-CTAT
60624784 CTGGGA
1 CTGGGA
60624790 TGTTGGCATT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
42 14 0.35
43 25 0.62
44 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
CTGGGACAGTAGCATCGTATTTGATTACATGTAAGACCCTAT
Found at i:60637444 original size:17 final size:17
Alignment explanation
Indices: 60637422--60637462 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
60637412 GTGTGTCTCA
60637422 GCCATGTGCAACACACG
1 GCCATGTGCAACACACG
*
60637439 GCCATGTGCGACACACG
1 GCCATGTGCAACACACG
*
60637456 GTCATGT
1 GCCATGT
60637463 TACACGGCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (17 bp):
GCCATGTGCAACACACG
Found at i:60639035 original size:42 final size:43
Alignment explanation
Indices: 60638927--60639041 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
60638917 TACCAACGCC
60638927 ATATCCC-AGATATGGTCTTACATGAAATCTCGTATCGATGCCA
1 ATATCCCAAG-TATGGTCTTACATGAAATCTCGTATCGATGCCA
* * * *
60638970 ATAGCCCAACTATGGTCTTACATGAAGTCTCGTATCGATG-CT
1 ATATCCCAAGTATGGTCTTACATGAAATCTCGTATCGATGCCA
* * *
60639012 ATATCCCAAGTATGGACTCACATGTAATCT
1 ATATCCCAAGTATGGTCTTACATGAAATCT
60639042 TACTAACCCT
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 25 0.41
43 35 0.57
44 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (43 bp):
ATATCCCAAGTATGGTCTTACATGAAATCTCGTATCGATGCCA
Found at i:60639980 original size:27 final size:26
Alignment explanation
Indices: 60639950--60640057 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 26
60639940 CTGCCAGGAT
* *
60639950 AGATATTGTGACAGAGTCACCAGATAC
1 AGATATTGTGGCAGAGCCACCAGA-AC
*
60639977 AGATATTGTGGCAGAGCCACTAGAAC
1 AGATATTGTGGCAGAGCCACCAGAAC
* *
60640003 AGATATTTGTGGCATAGCCACCAAAAAC
1 AGATA-TTGTGGCAGAGCCACC-AGAAC
* *
60640031 AGATATTTGTGGCATAGCCACAAGAAC
1 AGATA-TTGTGGCAGAGCCACCAGAAC
60640058 GCTTCCTCCA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
26 7 0.10
27 39 0.55
28 25 0.35
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.21
Consensus pattern (26 bp):
AGATATTGTGGCAGAGCCACCAGAAC
Found at i:60640040 original size:28 final size:28
Alignment explanation
Indices: 60639975--60640051 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
60639965 GTCACCAGAT
* * *
60639975 ACAGATA-TTGTGGCAGAGCCA-CTAGA
1 ACAGATATTTGTGGCATAGCCACCAAAA
60640001 ACAGATATTTGTGGCATAGCCACCAAAA
1 ACAGATATTTGTGGCATAGCCACCAAAA
60640029 ACAGATATTTGTGGCATAGCCAC
1 ACAGATATTTGTGGCATAGCCAC
60640052 AAGAACGCTT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
26 7 0.15
27 13 0.28
28 26 0.57
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (28 bp):
ACAGATATTTGTGGCATAGCCACCAAAA
Found at i:60643041 original size:17 final size:17
Alignment explanation
Indices: 60643019--60643052 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
60643009 TGAGTTCTAG
60643019 TAGCTAT-AAATATCAAA
1 TAGCTATGAAAT-TCAAA
60643036 TAGCTATGAAATTCAAA
1 TAGCTATGAAATTCAAA
60643053 ACTTATGGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.29
Consensus pattern (17 bp):
TAGCTATGAAATTCAAA
Found at i:60643411 original size:35 final size:35
Alignment explanation
Indices: 60643365--60643436 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
60643355 AAGTGTCGAG
60643365 GTAAGTTTGTGTAACTAAATTATGTATATTAATAT
1 GTAAGTTTGTGTAACTAAATTATGTATATTAATAT
60643400 GTAAGTTTGTGTAACTAAATTATGTATATTAATAT
1 GTAAGTTTGTGTAACTAAATTATGTATATTAATAT
60643435 GT
1 GT
60643437 TTGAATTGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (35 bp):
GTAAGTTTGTGTAACTAAATTATGTATATTAATAT
Found at i:60643750 original size:63 final size:64
Alignment explanation
Indices: 60643672--60643800 Score: 172
Period size: 65 Copynumber: 2.0 Consensus size: 64
60643662 GTGAGCATCC
* * * * *
60643672 TGATCGGTAGTGATCCTGCATGTGTTGCGG-AC-TGTTGCAGCTCTTTATGAGCATCCTGTTATA
1 TGATCGGTAGTGATCCTACATATATTGCGGAACAAG-TGCAGCTCATTATGAGCATCCTGTTATA
*
60643735 TGATCGGTTGTGATCCTACATATATTGCGGACACAAGTGCAGCTCATTATGAGCATCCTGTTATA
1 TGATCGGTAGTGATCCTACATATATTGCGGA-ACAAGTGCAGCTCATTATGAGCATCCTGTTATA
60643800 T
1 T
60643801 CTCACTTGAA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
63 26 0.46
65 30 0.53
66 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (64 bp):
TGATCGGTAGTGATCCTACATATATTGCGGAACAAGTGCAGCTCATTATGAGCATCCTGTTATA
Found at i:60643964 original size:56 final size:56
Alignment explanation
Indices: 60643898--60644004 Score: 171
Period size: 56 Copynumber: 1.9 Consensus size: 56
60643888 GTTAAAACTT
* * *
60643898 TTATGAGTTTCCTGTTTAGCCTGGATAAGCTTGCTGATACA-CGGCTCACATAAATC
1 TTATGAGTTTCCTGTTTAGCCCGGATAACCTTCCTGATACATC-GCTCACATAAATC
60643954 TTATGAGTTTCCTGTTTAGCCCGGATAACCTTCCTGATACATCGCTCACAT
1 TTATGAGTTTCCTGTTTAGCCCGGATAACCTTCCTGATACATCGCTCACAT
60644005 GAGCATCTTG
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
56 46 0.98
57 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (56 bp):
TTATGAGTTTCCTGTTTAGCCCGGATAACCTTCCTGATACATCGCTCACATAAATC
Found at i:60653012 original size:27 final size:27
Alignment explanation
Indices: 60652982--60653155 Score: 170
Period size: 27 Copynumber: 6.4 Consensus size: 27
60652972 TGAGTCCGCT
* *
60652982 CACTCAGTGCTATATAATCAACTCGCA
1 CACTTAGTGCTACATAATCAACTCGCA
* *
60653009 CACTTAGTGCTACGTAATCAAATCGCA
1 CACTTAGTGCTACATAATCAACTCGCA
*
60653036 CACTTAGTGCTACATAGTCAAACTCGCA
1 CACTTAGTGCTACATAATC-AACTCGCA
** ** *
60653064 CACTTAGTGCCGCATGGTCAATTCGCA
1 CACTTAGTGCTACATAATCAACTCGCA
* **
60653091 CACTTAGTGC-ATCATATTCATTTCGCA
1 CACTTAGTGCTA-CATAATCAACTCGCA
* * * *
60653118 CAATTAGTGCAACATAGTCAAATCGCA
1 CACTTAGTGCTACATAATCAACTCGCA
60653145 CACTTAGTGCT
1 CACTTAGTGCT
60653156 GTACAATTTA
Statistics
Matches: 123, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 99 0.80
28 24 0.20
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
CACTTAGTGCTACATAATCAACTCGCA
Found at i:60653125 original size:82 final size:81
Alignment explanation
Indices: 60652999--60653154 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
60652989 TGCTATATAA
* * *
60652999 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACAATTAGTGCAACATAGTCAAA-TCGCA
60653064 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
60653081 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACAATTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACAATTAGTGCAACATAGTCAAATCGCA
60653145 CACTTAGTGC
65 CACTTAGTGC
60653155 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACAATTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:60658182 original size:46 final size:46
Alignment explanation
Indices: 60658090--60658182 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
60658080 ACAATAGGTG
* *
60658090 CCAAATCTAGGTCATGTGTCAAATAATTCTTTTTGTGCGGCTTTAA
1 CCAAATCTAGGTCATGTGTCAAATAATTCTTTTTGTGCGACATTAA
*
60658136 CCAAATGTAGGTCATGTGTCAAATAATTCTTTTTGTGCGACATTAA
1 CCAAATCTAGGTCATGTGTCAAATAATTCTTTTTGTGCGACATTAA
60658182 C
1 C
60658183 TGTCTGGAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (46 bp):
CCAAATCTAGGTCATGTGTCAAATAATTCTTTTTGTGCGACATTAA
Found at i:60659589 original size:72 final size:72
Alignment explanation
Indices: 60659472--60659615 Score: 243
Period size: 72 Copynumber: 2.0 Consensus size: 72
60659462 TGTGTAAAGT
** * *
60659472 TAGCCAATCCATGCCCAAAATCATGTGAAATTCATCAAACGGTAATAGCATCAAATTAGCCAGAA
1 TAGCCAATCCATGCCCAAAATCATGACAAATTCATCAAACGGTAATAGCATCAAATTAACCAAAA
60659537 AATTGTA
66 AATTGTA
*
60659544 TAGCCAATCCATGCCTAAAATCATGACAAATTCATCAAACGGTAATAGCATCAAATTAACCAAAA
1 TAGCCAATCCATGCCCAAAATCATGACAAATTCATCAAACGGTAATAGCATCAAATTAACCAAAA
60659609 AATTGTA
66 AATTGTA
60659616 ACCCCGAGTC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.44, C:0.21, G:0.12, T:0.24
Consensus pattern (72 bp):
TAGCCAATCCATGCCCAAAATCATGACAAATTCATCAAACGGTAATAGCATCAAATTAACCAAAA
AATTGTA
Found at i:60663299 original size:21 final size:21
Alignment explanation
Indices: 60663273--60663317 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
60663263 ATTTTATTAC
60663273 ATGGTCAACAATATGTTAGAA
1 ATGGTCAACAATATGTTAGAA
60663294 ATGGTCAACAATATGTTAGAA
1 ATGGTCAACAATATGTTAGAA
60663315 ATG
1 ATG
60663318 ACATGTGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.29
Consensus pattern (21 bp):
ATGGTCAACAATATGTTAGAA
Found at i:60665988 original size:22 final size:22
Alignment explanation
Indices: 60665953--60666011 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
60665943 TAAATACGTT
* *
60665953 TGGCACAAACCCATAGTCAAGA
1 TGGCACAGAGCCATAGTCAAGA
** * * *
60665975 TGGCACAGAGCCATTTTTAGGT
1 TGGCACAGAGCCATAGTCAAGA
60665997 TGGCACAGAGCCATA
1 TGGCACAGAGCCATA
60666012 ATCAGATTAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20
Consensus pattern (22 bp):
TGGCACAGAGCCATAGTCAAGA
Found at i:60666387 original size:27 final size:27
Alignment explanation
Indices: 60666326--60666378 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
60666316 ATTTTACCCT
*
60666326 ACAGTGGTATTTCGATAATTTTACAAC
1 ACAGGGGTATTTCGATAATTTTACAAC
*
60666353 CCAGGGGTATTTC-AGTAATTTTACAA
1 ACAGGGGTATTTCGA-TAATTTTACAA
60666379 ATAGGGGGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (27 bp):
ACAGGGGTATTTCGATAATTTTACAAC
Found at i:60673942 original size:3 final size:3
Alignment explanation
Indices: 60673934--60673959 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
60673924 AATTGGGTAA
60673934 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
60673960 GAGGTTATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:60675513 original size:6 final size:6
Alignment explanation
Indices: 60675504--60675588 Score: 66
Period size: 6 Copynumber: 13.8 Consensus size: 6
60675494 TATTAGAACT
* * * *
60675504 AGAATC AGAATC AGAATT AGAATT AGTATC AGGTAA-C AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* *
60675553 AGAATC AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
60675589 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
5 4 0.06
6 51 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:60675544 original size:31 final size:31
Alignment explanation
Indices: 60675509--60675588 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
60675499 GAACTAGAAT
* * *
60675509 CAGAATCAGAATTAGAATTAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
60675540 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
60675571 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
60675589 GTGAATGCAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:60675762 original size:27 final size:26
Alignment explanation
Indices: 60675720--60675821 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
60675710 GCTCAGTTAT
* *
60675720 TAGATATTGTGACAGAGTCACCAGATA
1 TAGATATTGTGGCAGAGCCACCAGA-A
*
60675747 CAGATATTGTGGCAGAGCCACCAGAA
1 TAGATATTGTGGCAGAGCCACCAGAA
* *
60675773 TAGATATTTGTGGCATAGCCACTAGAAA
1 TAGATA-TTGTGGCAGAGCCACCAG-AA
* *
60675801 TAGATAATGTGGCAAAGCCAC
1 TAGATATTGTGGCAGAGCCAC
60675822 TTAATAGTAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 6 0.09
27 51 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (26 bp):
TAGATATTGTGGCAGAGCCACCAGAA
Found at i:60676008 original size:22 final size:22
Alignment explanation
Indices: 60675980--60676044 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
60675970 GCAAATACGT
*
60675980 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
60676002 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
60676024 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
60676045 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:60676907 original size:27 final size:27
Alignment explanation
Indices: 60676471--60676908 Score: 601
Period size: 27 Copynumber: 16.3 Consensus size: 27
60676461 AGGGCAAAAT
* * * *
60676471 GGTAATTTTACCCCACA-TGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60676497 GGTAGTTCCACCCTACAGGGGTATTTTC
1 GGTAATTCTACCCTACAGGGGTA-TTTC
*
60676525 -GTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60676551 GGTAATTCTACCCTACAAGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60676578 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
60676605 GGTAATTCTACCCTGTAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60676632 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60676659 GATAATTCTGCCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60676686 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60676713 GATAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60676740 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
60676767 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
60676794 GGTAATTCTACCCTATAGGAGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
60676821 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
60676848 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
60676875 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
60676902 GGTAATT
1 GGTAATT
60676909 TTACAAATCG
Statistics
Matches: 366, Mismatches: 43, Indels: 5
0.88 0.10 0.01
Matches are distributed among these distances:
26 17 0.05
27 346 0.95
28 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:60676975 original size:27 final size:26
Alignment explanation
Indices: 60676892--60676980 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 26
60676882 CTACCCTACA
*
60676892 GGGGTATTTTGGTAATTTTACAAATCG
1 GGGGTA-TTTGGTAATTTTACAACTCG
* * * *
60676919 AGGATATTTGGGTATTTTTATAAAC-CG
1 GGGGTATTT-GGTAATTTTA-CAACTCG
60676946 GGGGTACTTTGGTAATTTTACAACT-G
1 GGGGTA-TTTGGTAATTTTACAACTCG
60676972 GGGGTATTT
1 GGGGTATTT
60676981 CAATAATTTG
Statistics
Matches: 49, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
25 3 0.06
26 13 0.27
27 28 0.57
28 5 0.10
ACGTcount: A:0.25, C:0.08, G:0.27, T:0.40
Consensus pattern (26 bp):
GGGGTATTTGGTAATTTTACAACTCG
Found at i:60678248 original size:46 final size:47
Alignment explanation
Indices: 60678086--60678396 Score: 183
Period size: 47 Copynumber: 6.6 Consensus size: 47
60678076 TTATTTGTGT
* * * **
60678086 GCCAGTGTAAGACATGTCTGGGATATGCATCAGCCAC-ATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAGATGAGA
* * * * * *
60678132 GCCAGTGTAAGGCCATGTCTGGAACATGGCATCGGCATTG-AGACGAGT
1 GCCAGTGTAA-GACATGTCTGGGACAT-GCATCGGCCTCGAAGATGAGA
* *
60678180 GCTAGTGTAAGACATGTGTGGGACATGCATCGGCCTCGAAGATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAGATGAGA
* * * * *
60678227 GCCAGTGCAAGACA-GTCTGGGACATGTATTGG-CT--AAGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAGATG-AGA
* * ** * *
60678270 GCTAGTATAAGACCATGTCTGGGACATGGCATC--AATACGTATATACGAGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCT-CG-A-AGATGAGA
** * *
60678320 GCTGGTGTAAGACCATGTCTAGGACATGGCATCGGCCTC-AATGATGATA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAA-GATGAGA
*
60678369 GCCAGTGTAAGACCATGTCTGAGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
60678397 GTATCGACAA
Statistics
Matches: 200, Mismatches: 47, Indels: 34
0.71 0.17 0.12
Matches are distributed among these distances:
42 1 0.00
43 14 0.07
44 2 0.01
45 14 0.07
46 38 0.19
47 44 0.22
48 22 0.11
49 29 0.14
50 33 0.17
51 2 0.01
52 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAGATGAGA
Found at i:60681281 original size:40 final size:40
Alignment explanation
Indices: 60681205--60681426 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
60681195 AACCCAAGTA
* * * * *
60681205 CCTTTGGGATTTAG-CCGGATATAG-CAACTCGTACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
60681244 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
60681284 CCTTCGAGATTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
60681324 CCTTCGGGACTTAGCCCGGATATAGTCACTAGAACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
60681364 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
60681404 CCTTCGGGACTTAGCCCGAATAT
1 CCTTCGGGACTTAGCCCGGATAT
60681427 CATTCGAATA
Statistics
Matches: 165, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 11 0.07
40 153 0.93
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:60689361 original size:40 final size:40
Alignment explanation
Indices: 60689285--60689508 Score: 344
Period size: 40 Copynumber: 5.6 Consensus size: 40
60689275 CAAACCCAAG
* * *
60689285 TACCTTCGGGATTTAG-TCGGATATAG-CAACTCGCACAAA
1 TACCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAA
*
60689324 TACCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAA
1 TACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
* *
60689364 TACCTTCGGGATTTAGCCCGGATACAGTCACTAGCACAAA
1 TACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
*
60689404 TGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
1 TACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
*
60689444 TGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
1 TACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
*
60689484 TGCCTTCGGGACTTAGCCCGGATAT
1 TACCTTCGGGACTTAGCCCGGATAT
60689509 CATTCGAATA
Statistics
Matches: 173, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.08
40 158 0.91
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
Found at i:60697008 original size:50 final size:49
Alignment explanation
Indices: 60696928--60697059 Score: 149
Period size: 49 Copynumber: 2.7 Consensus size: 49
60696918 AGAGTTGTGC
* *
60696928 TAGTATAAGACCATGTTTGGGACATGGCATC-AACACGTATATACGAAAGA
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGAACACG-ATA-ACGAAAGA
** * * * *
60696978 TAGTGTAAGACCATGTCTGGGACATGGCATCGTCCTCGATAATGATAGC
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGAACACGATAACGAAAGA
* *
60697027 CAGTGTAAGACCATGTCTGGGACATGGAATCGA
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGA
60697060 CAACTTATCC
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
49 35 0.50
50 32 0.46
51 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (49 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGAACACGATAACGAAAGA
Found at i:60699721 original size:49 final size:49
Alignment explanation
Indices: 60699638--60699914 Score: 175
Period size: 49 Copynumber: 5.8 Consensus size: 49
60699628 GGTTAAGATA
* *
60699638 CCGATGCCATTTCCCAAACATGGTCTTACACTGGCTTTCATATAGCGAG-G
1 CCGATGCCATGTCCCAAACA-GGTCTTACACTGGCTCTCATATAGCG-GTG
* * *
60699688 CCGATTCCATGTCCCAAACAGGTCTTACACTGGCTCTCATCTATCGGTG
1 CCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATATAGCGGTG
** * * * *
60699737 TTGATGCCATGTCCCAGACAGGTCTTACACTGACACACA-ATAAGC--T-
1 CCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATAT-AGCGGTG
* * * * * *
60699783 --GACGCCATGTCCTAGACAGATCTTACACTGGCT-TGTATATCGCGAG-G
1 CCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCT-CATATAGCG-GTG
* * * * * **
60699830 CCGAT-ACATGTCCCAGACATGTCTTACACTAGCTCTCATCT--CAATG
1 CCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATATAGCGGTG
** *
60699876 CCGATG-CATGTCCCAGGCATGTCTTACACTGGCTCTCAT
1 CCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCAT
60699915 GTTGTGGCTG
Statistics
Matches: 180, Mismatches: 34, Indels: 30
0.74 0.14 0.12
Matches are distributed among these distances:
44 31 0.17
45 2 0.01
46 38 0.21
47 1 0.01
48 29 0.16
49 61 0.34
50 18 0.10
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
CCGATGCCATGTCCCAAACAGGTCTTACACTGGCTCTCATATAGCGGTG
Found at i:60699890 original size:46 final size:46
Alignment explanation
Indices: 60699828--60699954 Score: 166
Period size: 46 Copynumber: 2.8 Consensus size: 46
60699818 TATATCGCGA
* *
60699828 GGCCGATACATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT
1 GGCCGATGCATGTCCCAGGCATGTCTTACACTAGCTCTCATCT-AAT
* * **
60699875 -GCCGATGCATGTCCCAGGCATGTCTTACACTGGCTCTCATGTTGT
1 GGCCGATGCATGTCCCAGGCATGTCTTACACTAGCTCTCATCTAAT
* *
60699920 GGCTGATGCATGTCCCAGGCATATCTTACACTAGC
1 GGCCGATGCATGTCCCAGGCATGTCTTACACTAGC
60699955 ACACATATCA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
45 1 0.01
46 69 0.99
ACGTcount: A:0.21, C:0.30, G:0.20, T:0.28
Consensus pattern (46 bp):
GGCCGATGCATGTCCCAGGCATGTCTTACACTAGCTCTCATCTAAT
Found at i:60711238 original size:4 final size:4
Alignment explanation
Indices: 60711229--60711718 Score: 519
Period size: 4 Copynumber: 124.5 Consensus size: 4
60711219 TTTGTCTCTA
**
60711229 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TGCG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
** *
60711277 TATG TATG TAAA TATG TATG TGTG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * *
60711325 TGTG TATG T-T- TGTG TGTG TATG TATG TATG TCTG TATG --TG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * * *
60711369 TATA TATG TGTG TATG T-T- TGTG TATG TATG TATG TGTG TGTG TGTG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
60711415 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
60711463 TATG TATG TATG TATG --TG TGTG TGTG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
*
60711509 TATG TATG TATG TATG TATG TATG TATG TGTG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * * * * * *
60711557 TATG TGTG TGTG TATG TGTG TATG TATG TATA TGTA TATG TATA TGTA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* * * * * * * * * * * *
60711605 TATG TATA TGTA TATG TATA TGTA TATG TATA TGTA TATG TATA TGTA
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* ** *
60711653 TATG TATG TATG TATG TATG TATG TAAG TACA TATG TATG TACG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
* *
60711701 TATA TATA TATG TATG TA
1 TATG TATG TATG TATG TA
60711719 AGTACATGCG
Statistics
Matches: 416, Mismatches: 62, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
2 6 0.01
3 4 0.01
4 406 0.98
ACGTcount: A:0.24, C:0.01, G:0.26, T:0.49
Consensus pattern (4 bp):
TATG
Found at i:60711658 original size:6 final size:6
Alignment explanation
Indices: 60711581--60711659 Score: 158
Period size: 6 Copynumber: 13.2 Consensus size: 6
60711571 TGTGTGTATG
60711581 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
1 TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA TATGTA
60711629 TATGTA TATGTA TATGTA TATGTA TATGTA T
1 TATGTA TATGTA TATGTA TATGTA TATGTA T
60711660 GTATGTATGT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 73 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (6 bp):
TATGTA
Found at i:60715428 original size:9 final size:9
Alignment explanation
Indices: 60715414--60715446 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
60715404 TAATAAGTTA
*
60715414 ATGAAATAT
1 ATGAAAAAT
60715423 ATGAAAAAT
1 ATGAAAAAT
60715432 ATGAAAAAT
1 ATGAAAAAT
60715441 ATGAAA
1 ATGAAA
60715447 TTGGGACATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (9 bp):
ATGAAAAAT
Found at i:60718896 original size:49 final size:49
Alignment explanation
Indices: 60718840--60719350 Score: 822
Period size: 49 Copynumber: 10.6 Consensus size: 49
60718830 TATTTGAATA
60718840 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
60718889 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
60718938 AATGTGAAAATGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
60718987 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
60719036 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
60719085 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
60719134 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
60719183 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
60719230 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * * *
60719277 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
60719324 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
60719351 TCCCGAAGGG
Statistics
Matches: 440, Mismatches: 20, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
47 140 0.32
48 1 0.00
49 299 0.68
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:60723692 original size:42 final size:43
Alignment explanation
Indices: 60723635--60723756 Score: 158
Period size: 44 Copynumber: 2.8 Consensus size: 43
60723625 TCAAAGATCA
* *
60723635 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAGATA-CT-
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAGA-AGCTG
* * * *
60723677 ATGCCGATGTCCCAGACATGGTCTTACACATAAAACAGAAGTTG
1 ATGCCAATGTCCCAGACATGGTCTTACAC-GAAATCAGAAGCTG
60723721 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
60723757 CATAACGAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
42 27 0.40
43 13 0.19
44 28 0.41
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAGAAGCTG
Found at i:60731237 original size:42 final size:44
Alignment explanation
Indices: 60731137--60731301 Score: 155
Period size: 43 Copynumber: 3.8 Consensus size: 44
60731127 AACATATACA
* * * * *
60731137 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAACCAAACATCG
1 ATGCCAACGTCCCAGACAGTGGTCTTACACGAAATCAGATATCG
60731180 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAGATA-CG
1 ATGCCAAC-GTCCCAGACAGTGGTCTTACACGAAATCAGATATCG
* * * *
60731222 ATGCCGACGTCCCAGACA-TGGTCTTGCACGTAAAACAGA-AGTTG
1 ATGCCAACGTCCCAGACAGTGGTCTTACACG-AAATCAGATA-TCG
* *
60731266 ATGCCAACGTCTCAGA-TGTGGTCTTACACGAAATCA
1 ATGCCAACGTCCCAGACAGTGGTCTTACACGAAATCA
60731302 CATAACGAAA
Statistics
Matches: 101, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 30 0.30
43 44 0.44
44 27 0.27
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACAGTGGTCTTACACGAAATCAGATATCG
Found at i:60740392 original size:26 final size:26
Alignment explanation
Indices: 60740362--60740413 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
60740352 CACCAATGAA
60740362 TCGGGGAATCAGCACACAGCAACCCC
1 TCGGGGAATCAGCACACAGCAACCCC
*
60740388 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACACAGCAACCCC
60740414 CTTTTCACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.37, G:0.23, T:0.10
Consensus pattern (26 bp):
TCGGGGAATCAGCACACAGCAACCCC
Found at i:60740399 original size:105 final size:105
Alignment explanation
Indices: 60740120--60740492 Score: 626
Period size: 104 Copynumber: 3.6 Consensus size: 105
60740110 TAACCGTTAT
* ** **
60740120 TGGTGGATCTCGCACTTAGCACCACCGTTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCGGGGG
60740185 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
60740224 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACTTAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCGGGG
60740288 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
60740329 TGGTGGATCACGCACATTAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTC-GGG
1 TGGTGGATCACGCAC-TTAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCGGGG
60740393 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
60740434 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
60740493 TTATATACAA
Statistics
Matches: 257, Mismatches: 8, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
104 124 0.48
105 90 0.35
106 43 0.17
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (105 bp):
TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:60747464 original size:103 final size:104
Alignment explanation
Indices: 60747240--60747604 Score: 636
Period size: 103 Copynumber: 3.6 Consensus size: 104
60747230 TAACCGTTAT
*
60747240 TGGTGGATCTCGCACTTAGCACCACC--TGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
60747303 AATCAGCACATAGCAACCCCCTTT--CATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
60747340 TGGTGGATATCGCACTTAGCACCACCAATGAA-CGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
60747404 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
60747443 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
60747507 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
60747546 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
60747605 TTATATACAA
Statistics
Matches: 255, Mismatches: 4, Indels: 9
0.95 0.01 0.03
Matches are distributed among these distances:
100 25 0.10
101 56 0.22
102 4 0.02
103 142 0.56
104 28 0.11
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:60747505 original size:26 final size:26
Alignment explanation
Indices: 60747475--60747526 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
60747465 CACCAATGAA
*
60747475 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
60747501 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
60747527 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:60750002 original size:37 final size:37
Alignment explanation
Indices: 60749945--60750017 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
60749935 TACGAAGTCT
* * *
60749945 TACCCGGACATAATCTCCACACGAAGTTATCGGGTCA
1 TACCCGGACAAAATCCCCACACGAAGTCATCGGGTCA
*
60749982 TACCCGGACAAAATCCCCACACGTAGTCATCGGGTC
1 TACCCGGACAAAATCCCCACACGAAGTCATCGGGTC
60750018 TTTAGAGCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (37 bp):
TACCCGGACAAAATCCCCACACGAAGTCATCGGGTCA
Found at i:60750216 original size:47 final size:47
Alignment explanation
Indices: 60750138--60750862 Score: 1135
Period size: 47 Copynumber: 15.1 Consensus size: 47
60750128 CCCTTCGGGA
* * * * * *
60750138 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60750185 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60750232 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60750279 CCTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
60750330 CTTATCTCATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60750377 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60750424 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60750475 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60750524 CTTATCACATCTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CA-C-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60750575 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60750622 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
60750669 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
60750716 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60750763 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60750810 CTTATCACATATATATACACTTTCACATTCATCACCTCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60750859 CTTA
1 CTTA
60750863 CTATCATTTC
Statistics
Matches: 640, Mismatches: 25, Indels: 24
0.93 0.04 0.03
Matches are distributed among these distances:
47 411 0.64
48 1 0.00
49 89 0.14
51 138 0.22
52 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:60750412 original size:145 final size:143
Alignment explanation
Indices: 60750149--60750862 Score: 1130
Period size: 145 Copynumber: 4.9 Consensus size: 143
60750139 TTATCACATT
* * * * * * *
60750149 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
60750214 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
60750279 CCTATCACATATATA
131 CTTATCAC-T-TATA
* *
60750294 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACGCTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
*
60750359 TCACATCGGCCATTAGGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
60750424 CTTATCACATATATA
131 CTTATCAC-T-TATA
60750439 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATT
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATT
60750504 CATCACATCGGCCATTAGGCCTTATCACATCTATATATACACTTTCACATTCATCACATCGGCCA
64 CATCACATCGGCCATTAGGCCTTAT--CA-C-ATATATACACTTTCACATTCATCACATCGGCCA
*
60750569 TTAGGCCTTAT--CTCATA
125 TTAGGCCTTATCACTTATA
*
60750586 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
**
60750651 TCACATCGGCCATTAGGCCTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
60750716 CTTATCAC--GCA
131 CTTATCACTTATA
60750727 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
*
60750792 TCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACCTCGGCCATTAG
66 TCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAG
60750857 GCCTTA
129 GCCTTA
60750863 CTATCATTTC
Statistics
Matches: 535, Mismatches: 24, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
141 133 0.25
142 1 0.00
143 43 0.08
145 221 0.41
147 89 0.17
148 1 0.00
149 3 0.01
150 1 0.00
151 43 0.08
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (143 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
CTTATCACTTATA
Done.