Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 187 of 325
Found at i:60762385 original size:27 final size:27
Alignment explanation
Indices: 60762354--60762406 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
60762344 TGATTTCTTC
60762354 AGTAGAAACATATTCATGAGCATACTT
1 AGTAGAAACATATTCATGAGCATACTT
*
60762381 AGTAGAAACATATTCCTGAGCATACT
1 AGTAGAAACATATTCATGAGCATACT
60762407 AACTTAGTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (27 bp):
AGTAGAAACATATTCATGAGCATACTT
Found at i:60764190 original size:27 final size:27
Alignment explanation
Indices: 60764160--60764337 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
60764150 ATATTAAGTC
* * *
60764160 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
60764187 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
60764215 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
60764242 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
60764269 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
60764296 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
60764323 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60764338 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:60764244 original size:55 final size:54
Alignment explanation
Indices: 60764160--60764337 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
60764150 ATATTAAGTC
* * *
60764160 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
60764215 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
60764269 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
60764323 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
60764338 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:60764326 original size:81 final size:82
Alignment explanation
Indices: 60764181--60764336 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
60764171 TGCTATATAA
* *
60764181 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
60764246 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
60764263 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
60764326 ACACTTAGTGC
65 ACACTTAGTGC
60764337 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:60768985 original size:21 final size:20
Alignment explanation
Indices: 60768957--60768995 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
60768947 CAAAACTTGT
60768957 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
60768977 ATAACCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
60768996 CAAAACACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.26, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:60772477 original size:20 final size:20
Alignment explanation
Indices: 60772431--60772482 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 20
60772421 AAAAAAACAT
*
60772431 TTAAAATGATTTTAACATGA
1 TTAAAATAATTTTAACATGA
* * * * *
60772451 TTGAAATCATTTTGACTTGG
1 TTAAAATAATTTTAACATGA
60772471 TTAAAATAATTT
1 TTAAAATAATTT
60772483 GCACTTGATT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (20 bp):
TTAAAATAATTTTAACATGA
Found at i:60774369 original size:47 final size:48
Alignment explanation
Indices: 60774310--60774619 Score: 232
Period size: 47 Copynumber: 6.5 Consensus size: 48
60774300 TGTGCTAGTT
60774310 TAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAAAGACAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAAAGACAGTG
* ** * * *
60774356 TAATACCATGTCTGGGACATGGCATCGG-CATCAAGATGTAAGCCAATG
1 TAAGACCATGTCTGGGACATGGCATCGGCCA-CATTATGAAAGACAGTG
* * ** * *
60774404 TAAGA-CATGGCTGGGACAT-GCATCGGCTACAAGATG--TGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAAAGACAGTG
* * * **
60774448 TAAGACCATGTCTGGG-CTATGGCATCAGCAAGGA-TATGTGAGAGCTAGTG
1 TAAGACCATGTCTGGGAC-ATGGCATCGGCCA-CATTATGAAAGA-C-AGTG
* * * * *
60774498 TAAGACCATGTCTGGGACATGGCATCGTCCTCGATTTTGATAGTCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCAC-ATTATGAAAGACAGTG
*
60774547 TAAGACCATGTCTGGGACATGGCATC-G--AC-TTGATGGATAAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACATT-AT-GA-AAGACAGTG
*
60774594 TAAGACCATGTTTGGGACATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
60774620 AGCATTATAC
Statistics
Matches: 212, Mismatches: 34, Indels: 35
0.75 0.12 0.12
Matches are distributed among these distances:
44 13 0.06
45 12 0.06
46 32 0.15
47 63 0.30
48 24 0.11
49 31 0.15
50 31 0.15
51 6 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAAAGACAGTG
Found at i:60774555 original size:99 final size:93
Alignment explanation
Indices: 60774303--60774619 Score: 286
Period size: 94 Copynumber: 3.3 Consensus size: 93
60774293 TTATTTGTGT
* * * * *
60774303 GCTAGTTTAAGACATGTCTGGGACATGCATCGGCCACATTATGAAAGACAGTGTAATACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GCCTCATTATGATAGTCAGTGTAAGACCATGTC
* *
60774368 TGGGACATGGCATCGGCATCAAGATGTAA
65 TGGGACATGGCATCAGCAACAAGATGTAA
* * * * **
60774397 GCCAATGTAAGACATGGCTGGGACATGCATCGGCTACAAGATG-T-GTCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCT-CATTATGATAGTCAGTGTAAGACCATGTC
** *
60774460 TGGG-CTATGGCATCAGCAAGGATATGTGAGA
65 TGGGAC-ATGGCATCAGCAACAAGATGT-A-A
*
60774491 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGTCCTCGATTTTGATAGTCAGTGTAAGACCAT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG-CCTC-ATTATGATAGTCAGTGTAAGACCAT
**
60774556 GTCTGGGACATGGCATC-G--ACTTGATGGATAA
62 GTCTGGGACATGGCATCAGCAACAAGAT-G-TAA
* *
60774587 GCCAGTGTAAGACCATGTTTGGGACATGGCATC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATC
60774620 AGCATTATAC
Statistics
Matches: 181, Mismatches: 29, Indels: 24
0.77 0.12 0.10
Matches are distributed among these distances:
91 1 0.01
92 37 0.20
93 3 0.02
94 43 0.24
95 13 0.07
96 42 0.23
97 7 0.04
98 3 0.02
99 31 0.17
100 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGCCTCATTATGATAGTCAGTGTAAGACCATGTCT
GGGACATGGCATCAGCAACAAGATGTAA
Found at i:60777502 original size:20 final size:19
Alignment explanation
Indices: 60777473--60777526 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
60777463 ATCCCTAGTG
* **
60777473 GTATCGATATTTTTTCACTA
1 GTATCAATATTTTTT-AAAA
*
60777493 GTATCAATATATTTATAAAA
1 GTATCAATAT-TTTTTAAAA
60777513 GTATCAATATTTTT
1 GTATCAATATTTTT
60777527 AAGTTGGTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 3 0.11
20 21 0.75
21 4 0.14
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.48
Consensus pattern (19 bp):
GTATCAATATTTTTTAAAA
Found at i:60777553 original size:25 final size:25
Alignment explanation
Indices: 60777519--60777569 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
60777509 AAAAGTATCA
60777519 ATATTTTTAAGTTGGTATCGATACC
1 ATATTTTTAAGTTGGTATCGATACC
60777544 ATATTTTTAAGTTGGTATCGATACC
1 ATATTTTTAAGTTGGTATCGATACC
60777569 A
1 A
60777570 AACTATCATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (25 bp):
ATATTTTTAAGTTGGTATCGATACC
Found at i:60782983 original size:49 final size:49
Alignment explanation
Indices: 60782918--60783046 Score: 147
Period size: 50 Copynumber: 2.6 Consensus size: 49
60782908 TCAAGTCGAT
*
60782918 GCCATGTCCAAGACATGGTCTTACACTGACTTTCA-AAAT-CGAGGCCGAC
1 GCCATGTCC-AGACATGGTCTTACACTGACTCTCACAAATCCG-GGCCGAC
* * * *
60782967 GCCATGTCCTAGACATGGTCTTACACT-AGCTCTCACATATCCGTGCTGAT
1 GCCATGTCC-AGACATGGTCTTACACTGA-CTCTCACAAATCCGGGCCGAC
60783017 GCCATGTCACAGACATGGTCTTACACTGAC
1 GCCATGTC-CAGACATGGTCTTACACTGAC
60783047 ACATCTCGTA
Statistics
Matches: 69, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
48 1 0.01
49 31 0.45
50 33 0.48
51 4 0.06
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (49 bp):
GCCATGTCCAGACATGGTCTTACACTGACTCTCACAAATCCGGGCCGAC
Found at i:60783100 original size:46 final size:48
Alignment explanation
Indices: 60782869--60783227 Score: 246
Period size: 46 Copynumber: 7.6 Consensus size: 48
60782859 TATAATACTA
* * * ** * *
60782869 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACCCATC-AAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTTACATATCGAGGCCG
* * *
60782916 ATGCCATGTCCAAGACATGGTCTTACACTGACTTTCAAAATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTTAC-ATATCGAGGCCG
* * * *
60782965 ACGCCATGTCCTAGACATGGTCTTACACT-AGCTCTCACATATCCG-TGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-CT-T-ACATAT-CGAGGCCG
* *
60783015 ATGCCATGTCACAGACATGGTCTTACACTGAC--ACATCTCGTA-GCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTTACATATCG-AGGCCG
* *
60783061 ATG-CATGTCCCAGACAT-GTCTTACACTGTCTTACATCTCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTTACATATCGAGGCCG
* * * * * * *
60783107 ATG-TATGTCCCAAACAT-GTCTTACACT-AGCTCT-CGTCTCAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGA-CT-TACATATCGAGGCCG
* * * * *
60783153 ATGCCATGTCCTAGACATGGTTTTATACTGGCTCT-CATAAT-GCGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACT-TACAT-ATCGAGGCCG
60783201 ATG-CATGTCCCAGACAT-GTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
60783228 AGCACACAAA
Statistics
Matches: 250, Mismatches: 44, Indels: 37
0.76 0.13 0.11
Matches are distributed among these distances:
44 12 0.05
45 16 0.06
46 70 0.28
47 56 0.22
48 24 0.10
49 34 0.14
50 34 0.14
51 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTTACATATCGAGGCCG
Found at i:60786129 original size:102 final size:102
Alignment explanation
Indices: 60785953--60786185 Score: 405
Period size: 102 Copynumber: 2.3 Consensus size: 102
60785943 GTGAGAACAT
* *
60785953 ATGTGTAGTACTATGT-ACAGGCTACTATGTGTTTAAGACAGTTTTAGGTCCCGTGTGTAGTACT
1 ATGTGTAGTACTATGTGA-AGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTATAGTACT
60786017 AAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGC
65 AAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGC
60786055 ATGTGTAGTACTATGTGAAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTATAGTACTA
1 ATGTGTAGTACTATGTGAAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTATAGTACTA
*
60786120 AGTGCAGGCTACTACGTGTACTAGATTGTTAGGTCGC
66 AGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGC
* *
60786157 ATGTGTAGTACTAAGTGTAGGCTACTATG
1 ATGTGTAGTACTATGTGAAGGCTACTATG
60786186 AGTACTGGAG
Statistics
Matches: 125, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
102 124 0.99
103 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.34
Consensus pattern (102 bp):
ATGTGTAGTACTATGTGAAGGCTACTATGTGTTTAAGACAGTTTTAGGTCACGTGTATAGTACTA
AGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGC
Found at i:60786191 original size:50 final size:50
Alignment explanation
Indices: 60785953--60786183 Score: 227
Period size: 50 Copynumber: 4.5 Consensus size: 50
60785943 GTGAGAACAT
* * * * *
60785953 ATGTGTAGTACTATGTACAGGCTACTATGTGT-TTAAGACAGTT-TTAGGTCCC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AG--A-TTGTTAGGTCGC
* *
60786005 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGTTAGGTCGC
* * * * *
60786055 ATGTGTAGTACTATGTGAAGGCTACTATGTGT-TTAAGACAGTT-TTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AG--A-TTGTTAGGTCGC
* *
60786107 GTGTATAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGTTAGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGTTAGGTCGC
*
60786157 ATGTGTAGTACTAAGTGTAGGCTACTA
1 ATGTGTAGTACTAAGTGCAGGCTACTA
60786184 TGAGTACTGG
Statistics
Matches: 147, Mismatches: 24, Indels: 18
0.78 0.13 0.10
Matches are distributed among these distances:
49 4 0.03
50 72 0.49
52 68 0.46
53 3 0.02
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGTTAGGTCGC
Found at i:60787009 original size:180 final size:180
Alignment explanation
Indices: 60786752--60787080 Score: 559
Period size: 180 Copynumber: 1.8 Consensus size: 180
60786742 ATCCGAGATC
* * *
60786752 TGTACCATGAGATAAATATTTTTTAGTGAAGAAAGATTGGAACTATCAGACAGTGAAATAGGGGT
1 TGTACCATGAGATAAATATTTTTTAGTGAAGAAAGATTAGAACTATCAGACAATGAAATAGGGGC
* *
60786817 ATATTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTTTGAAAATTTTATGGTAAGAAT
66 AAATTTAATGAATAAACTGTACAAATTGGCTAAACCAAAAATTTTGAAAATTTTATGGTAAGAAT
60786882 ACACGTGAGTCTAGTTTTTATAAAAGTTAGCAGTTCTTAATTTGGAGTCT
131 ACACGTGAGTCTAGTTTTTATAAAAGTTAGCAGTTCTTAATTTGGAGTCT
* * **
60786932 TGTACCATGAGATAAATATTTTTTAGTGAAGAGAGTTTAGAACTATTGGACAATGAAATAGGGGC
1 TGTACCATGAGATAAATATTTTTTAGTGAAGAAAGATTAGAACTATCAGACAATGAAATAGGGGC
60786997 AAATTTAATGAATAAACTGTACAAATTGGCTAAACCAAAAATTTTGAAAATTTTATGGTAAGAAT
66 AAATTTAATGAATAAACTGTACAAATTGGCTAAACCAAAAATTTTGAAAATTTTATGGTAAGAAT
* *
60787062 ATATGTGAGTCTAGTTTTT
131 ACACGTGAGTCTAGTTTTT
60787081 TGGAAAATTA
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
180 138 1.00
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.34
Consensus pattern (180 bp):
TGTACCATGAGATAAATATTTTTTAGTGAAGAAAGATTAGAACTATCAGACAATGAAATAGGGGC
AAATTTAATGAATAAACTGTACAAATTGGCTAAACCAAAAATTTTGAAAATTTTATGGTAAGAAT
ACACGTGAGTCTAGTTTTTATAAAAGTTAGCAGTTCTTAATTTGGAGTCT
Found at i:60788792 original size:46 final size:46
Alignment explanation
Indices: 60788624--60788892 Score: 171
Period size: 46 Copynumber: 5.8 Consensus size: 46
60788614 TGTAACCCGC
* * * *
60788624 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCAC-TT-GCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC-GG-ACGTTCACAT
* *
60788670 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC-G--GAC--GTTCACAT
* * * * *
60788720 -C-TCA-CGAACTCGGGCTCAACTCAACGAGTTCAGACGTTCACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCACAT
* * *
60788763 CCATAAGTGAACTTAGACTCAACTCAACGAGCTCGGATCCCTAGTT-ACGT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C--GTTCACAT
* * * * *
60788813 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCACAT
* *
60788856 CCATAAGTGAACTCAAACTCAACTCAACGGGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
60788893 TACCCAAATA
Statistics
Matches: 171, Mismatches: 34, Indels: 36
0.71 0.14 0.15
Matches are distributed among these distances:
42 6 0.04
43 6 0.04
44 5 0.03
45 4 0.02
46 82 0.48
47 49 0.29
48 5 0.03
49 3 0.02
50 8 0.05
51 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACGTTCACAT
Found at i:60788846 original size:47 final size:46
Alignment explanation
Indices: 60788678--60788836 Score: 155
Period size: 47 Copynumber: 3.4 Consensus size: 46
60788668 ATCCATAAGT
60788678 GAACTCAGACTCAACTCAACGAGCTCAGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCAGAT-CCTAGTTACATCTCAC
* * * * *
60788725 GAACTCGGGCTCAACTCAACGAGTTCAGA--C--GTTCACATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGCTCAGATCCTAGTT-ACAT-C-TCA-C
* * *
60788771 GAACTTAGACTCAACTCAACGAGCTCGGATCCCTAGTTACGTCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCAGAT-CCTAGTTACATCTCAC
*
60788818 GAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAA
60788837 TGAGTTCGGA
Statistics
Matches: 88, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
42 3 0.03
43 4 0.05
44 2 0.02
45 2 0.02
46 24 0.27
47 43 0.49
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (46 bp):
GAACTCAGACTCAACTCAACGAGCTCAGATCCTAGTTACATCTCAC
Found at i:60788892 original size:93 final size:93
Alignment explanation
Indices: 60788632--60788893 Score: 384
Period size: 93 Copynumber: 2.8 Consensus size: 93
60788622 GCCCATAAGT
*
60788632 GAACTCGGACTCAACTCAATGAGCTCGGGCAC-TT-GCATCCATAAGTGAACTCAGACTCAACTC
1 GAACTCGGACTCAACTCAATGAGTTC-GG-ACGTTCGCATCCATAAGTGAACTCAGACTCAACTC
* *
60788695 AACGAGCTCAGATGCCTAGTTACATCTCAC
64 AACGAGCTCGGATCCCTAGTTACATCTCAC
* * * * *
60788725 GAACTCGGGCTCAACTCAACGAGTTCAGACGTTCACATCCATAAGTGAACTTAGACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
60788790 CGAGCTCGGATCCCTAGTTACGTCTCAC
66 CGAGCTCGGATCCCTAGTTACATCTCAC
*
60788818 GAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCAAACTCAACTCAA
1 GAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
60788883 CGGGTTCGGAT
66 CGAGCTCGGAT
60788894 ACCCAAATAT
Statistics
Matches: 150, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
91 2 0.01
92 3 0.02
93 145 0.97
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATCCCTAGTTACATCTCAC
Found at i:60791329 original size:30 final size:30
Alignment explanation
Indices: 60791285--60791353 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
60791275 TAAAGATAAC
* *
60791285 AAGAAAACC-GAATAAAGAAAT-TCAAGATA
1 AAGAAACCCAGAATAAAGAAATCT-AAAATA
*
60791314 GAGAAACCCAGAATAAAGAAATCTAAAATA
1 AAGAAACCCAGAATAAAGAAATCTAAAATA
60791344 AAGAAACCCA
1 AAGAAACCCA
60791354 AGATACGATA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 7 0.21
30 26 0.76
31 1 0.03
ACGTcount: A:0.61, C:0.14, G:0.13, T:0.12
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCTAAAATA
Found at i:60791333 original size:15 final size:15
Alignment explanation
Indices: 60791285--60791353 Score: 52
Period size: 15 Copynumber: 4.7 Consensus size: 15
60791275 TAAAGATAAC
*
60791285 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
**
60791299 AAGAAATTCA-AGATA
1 AAGAAACCCAGA-ATA
*
60791314 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
* * *
60791329 AAGAAATCTAAAATA
1 AAGAAACCCAGAATA
60791344 AAGAAACCCA
1 AAGAAACCCA
60791354 AGATACGATA
Statistics
Matches: 41, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
14 8 0.20
15 32 0.78
16 1 0.02
ACGTcount: A:0.61, C:0.14, G:0.13, T:0.12
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:60794397 original size:46 final size:46
Alignment explanation
Indices: 60794338--60794505 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
60794328 TACATCTCAC
* *
60794338 GAACTCAGACTCAACTCAACGACTTCGGACGTTCGTATCCATAAGT
1 GAACTCGGACTCAACTCAACGACTTCGGACATTCGTATCCATAAGT
* ** * * *
60794384 GAACTCGGACTCAACTCAACGAGC-TCAGATCCCTAGT-TACGTC-TCA-C
1 GAACTCGGACTCAACTCAACGA-CTTCGGA-CATTCGTAT-C--CATAAGT
* *
60794431 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGACTTCGGACATTCGTATCCATAAGT
*
60794477 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGACTTCGGA
60794506 TGCCCAAATA
Statistics
Matches: 98, Mismatches: 15, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 59 0.60
47 33 0.34
48 2 0.02
49 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGACTTCGGACATTCGTATCCATAAGT
Found at i:60794445 original size:47 final size:45
Alignment explanation
Indices: 60794291--60794453 Score: 136
Period size: 47 Copynumber: 3.5 Consensus size: 45
60794281 ATCCATAAGT
* * *
60794291 GAACACGGACTCAACTCAACAAGCTCGAATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCG-ATCCCTAGTTAC-TCTCAC
* ** * * *
60794338 GAACTCAGACTCAACTCAACGA-CTTCGGA-CGTTCG-TA-TCCATAAGT
1 GAACTCGGACTCAACTCAACGAGC-TC-GATCCCTAGTTACT-C-TCA-C
60794384 GAACTCGGACTCAACTCAACGAGCTCAGATCCCTAGTTACGTCTCAC
1 GAACTCGGACTCAACTCAACGAGCTC-GATCCCTAGTTAC-TCTCAC
60794431 GAACTCGGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
60794454 TTCGGACATT
Statistics
Matches: 90, Mismatches: 16, Indels: 20
0.71 0.13 0.16
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 4 0.04
46 28 0.31
47 49 0.54
48 5 0.06
49 1 0.01
50 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.20
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGCTCGATCCCTAGTTACTCTCAC
Found at i:60794497 original size:93 final size:93
Alignment explanation
Indices: 60794244--60794499 Score: 379
Period size: 93 Copynumber: 2.8 Consensus size: 93
60794234 CGCCCATAAG
* * * * * *
60794244 CGAACTCGGACTCAAGTCAATGAGCTCGGTCGCTCGCATCCATAAGTGAACACGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
60794309 ACAAGCTCGAATGCCTAGTTACATCTCA
66 ACGAGCTCGAATCCCTAGTTACATCTCA
* * *
60794337 CGAACTCAGACTCAACTCAACGACTTCGGACGTTCGTATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
60794402 ACGAGCTC-AGATCCCTAGTTACGTCTCA
66 ACGAGCTCGA-ATCCCTAGTTACATCTCA
*
60794430 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
60794495 ACGAG
66 ACGAG
60794500 TTCGGATGCC
Statistics
Matches: 146, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
92 1 0.01
93 145 0.99
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGAATCCCTAGTTACATCTCA
Found at i:60796410 original size:49 final size:47
Alignment explanation
Indices: 60796292--60796420 Score: 179
Period size: 47 Copynumber: 2.7 Consensus size: 47
60796282 AGGGTATGAT
* **
60796292 GTCGATCCCATGTCCCAGACATGGTCTTACACTGGCTCATGTCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAATCATGTCTCAA
*
60796339 GTCGATGCCATGTCCCAAACATGGTCTTACACTGAAT-ATTGTCATCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGAATCA-TGTC-TCAA
*
60796387 GGTTGATGCCATGTCCCAGACATGGTCTTACACT
1 -GTCGATGCCATGTCCCAGACATGGTCTTACACT
60796421 AGCTCTCGCA
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
46 1 0.01
47 37 0.51
48 4 0.05
49 31 0.42
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGAATCATGTCTCAA
Found at i:60796490 original size:96 final size:95
Alignment explanation
Indices: 60796299--60796518 Score: 222
Period size: 96 Copynumber: 2.3 Consensus size: 95
60796289 GATGTCGATC
*
60796299 CCATGTCCCAGACATGGTCTTACACTGGCTCATGTCTCAAGTCGATGCCATGTCCCAAACATGGT
1 CCATGTCCCAGACATGGTCTTACACTAGCTCATGTCTCAAGTCGATGCCATGTCCCAAACATGGT
* * * *
60796364 CTTACACTGAATATTGTCATCAAGGTTGATG
66 CTTACACTGAACAATCTCAT-AAGGCTGATG
* *
60796395 CCATGTCCCAGACATGGTCTTACACTAGCTC-TCG-CAT-ATTAGTGCCGATGCCATGTCTCAGA
1 CCATGTCCCAGACATGGTCTTACACTAGCTCAT-GTC-TCA--AGT--CGATGCCATGTCCCAAA
60796457 CATGGTCTTACACT-AACACATCTCAT-A-GCTGATG
60 CATGGTCTTACACTGAACA-ATCTCATAAGGCTGATG
* * *
60796491 -CAAGTCCCTGACAT-GTCTTATACTAGCT
1 CCATGTCCCAGACATGGTCTTACACTAGCT
60796519 TACCTTACGA
Statistics
Matches: 107, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
94 13 0.12
95 15 0.14
96 38 0.36
97 4 0.04
98 3 0.03
99 34 0.32
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (95 bp):
CCATGTCCCAGACATGGTCTTACACTAGCTCATGTCTCAAGTCGATGCCATGTCCCAAACATGGT
CTTACACTGAACAATCTCATAAGGCTGATG
Found at i:60796649 original size:140 final size:141
Alignment explanation
Indices: 60796386--60796658 Score: 329
Period size: 140 Copynumber: 1.9 Consensus size: 141
60796376 ATTGTCATCA
* ** * *
60796386 AGGTTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATTAGTGCCGATGCCATGT
1 AGGTCGATGCCATGTCCCAGACATCATCTTACACTAGCTCTCG-ATATCAATGCCGATGCCATGT
* * * *
60796451 CTCAGACATGGTCTTACACTAACACATCTCATAGCTGATGCAAGTCCCTGACATGTCTTATACTA
65 CCCAGACATGGTCTTACACTAACACATCTAATAGCTGATGCAAGTCCCGGACATGTCTTACACTA
60796516 GCTTACCTTACG
130 GCTTACCTTACG
* * *
60796528 AGGTCGATG-CATGTCCCAGACA-CATCTTACACTAGCTCTTG-TCTCAATGCCGATTCCATGTC
1 AGGTCGATGCCATGTCCCAGACATCATCTTACACTAGCTCTCGATATCAATGCCGATGCCATGTC
** * * *
60796590 CCAGACATGGTCTTACACTGGCTC-TCATAATGTGGCTGATGCATGTCCCGGACATGTCTTACAC
66 CCAGACATGGTCTTACACTAACACATC-TAA--TAGCTGATGCAAGTCCCGGACATGTCTTACAC
60796654 TAGCT
128 TAGCT
60796659 CACAATAGCC
Statistics
Matches: 111, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
137 2 0.02
138 39 0.35
140 49 0.44
141 13 0.12
142 8 0.07
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (141 bp):
AGGTCGATGCCATGTCCCAGACATCATCTTACACTAGCTCTCGATATCAATGCCGATGCCATGTC
CCAGACATGGTCTTACACTAACACATCTAATAGCTGATGCAAGTCCCGGACATGTCTTACACTAG
CTTACCTTACG
Found at i:60805604 original size:49 final size:50
Alignment explanation
Indices: 60805364--60805609 Score: 280
Period size: 49 Copynumber: 4.9 Consensus size: 50
60805354 ATCTATTGTG
* * ** *
60805364 AGGTCACATATGTAGTACTAAGTGCAAGCTACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * * *
60805414 -GGCCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * **
60805464 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
60805514 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* *
60805564 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
60805610 GCCTTGTCTA
Statistics
Matches: 163, Mismatches: 31, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
49 79 0.48
50 47 0.29
51 37 0.23
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:60805608 original size:99 final size:101
Alignment explanation
Indices: 60805367--60805608 Score: 283
Period size: 99 Copynumber: 2.4 Consensus size: 101
60805357 TATTGTGAGG
* * *** * ** * * *
60805367 TCACATATGTAGTACTAAGTGCAAGCTACTACATGTACCGGATAATT-GGCCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATGGTTAGGTCACGTGTGTAGTAC
*
60805431 TAAGTGCAGGCTACTATGCGTACCCGAAAACTTCGA
66 TAAGTGCAGGCTACTACGCGTACCCGAAAACTTCGA
* * *
60805467 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATGGTTAGGTCACGTGTGTAGTAC
* * * *
60805532 TAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GG
66 TAAGTGCAGGCTACTACGCGTACCCGAAAACTTCGA
*
60805566 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
60805609 AGCCTTGTCT
Statistics
Matches: 120, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
99 40 0.33
100 40 0.33
101 40 0.33
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (101 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATGGTTAGGTCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGCGTACCCGAAAACTTCGA
Found at i:60809411 original size:47 final size:45
Alignment explanation
Indices: 60809306--60809435 Score: 147
Period size: 47 Copynumber: 2.8 Consensus size: 45
60809296 ACCTTACGAG
* * *
60809306 GTCGATGCATGTCCCAAACACGTCTTACACTAGCTCTCGTCTCAAT
1 GTCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG-ATCAAT
*
60809352 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-AT-AATGT
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGATCAA--T
*
60809399 GTCTGATGCATGTCCCAGATATGTCTTACACTAGCTC
1 GTC-GATGCATGTCCCAGACATGTCTTACACTAGCTC
60809436 ACAATAGTCC
Statistics
Matches: 73, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
45 2 0.03
46 22 0.30
47 29 0.40
48 20 0.27
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.30
Consensus pattern (45 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATCAAT
Found at i:60822510 original size:48 final size:49
Alignment explanation
Indices: 60822390--60822762 Score: 338
Period size: 48 Copynumber: 7.7 Consensus size: 49
60822380 GTAAGATGCT
* * *
60822390 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGATGCC
1 GATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCACATATCAAGGCC
* * * *
60822440 GATGCCATGTTCCAAACATGGTCTTACACTAGC-CT-ACATGTCGAGGTC
1 GATGCCATG-TCCAGACATGGTCTTACACTAGCTCTCACATATCAAGGCC
* * *
60822488 GATGCCTTGTCCTAGACATGGTCTTACACTAGCTCT--CATATCAATGCT
1 GATGCCATGTCC-AGACATGGTCTTACACTAGCTCTCACATATCAAGGCC
* *
60822536 GATGCCATGTTCCAAACATGGTCTTACACT-G-GCTCACATATCAAGGCC
1 GATGCCATG-TCCAGACATGGTCTTACACTAGCTCTCACATATCAAGGCC
* * *
60822584 GATGCCATATCCCAGACATGGTCTTATACTAGCTCT--CATATCAATGCC
1 GATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCACATATCAAGGCC
* * * * * *
60822632 GATGTCATGTTCCAAACATCGTCTTACACT-G-GCTCACATATCGAGACC
1 GATGCCATG-TCCAGACATGGTCTTACACTAGCTCTCACATATCAAGGCC
* * *
60822680 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--CATATCAATGCT
1 GATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCACATATCAAGGCC
** * *
60822728 GATGTAATGTTCCAAACATGGTCTTACACTGGCTC
1 GATGCCATG-TCCAGACATGGTCTTACACTAGCTC
60822763 ACATAACCCT
Statistics
Matches: 265, Mismatches: 42, Indels: 34
0.78 0.12 0.10
Matches are distributed among these distances:
46 4 0.02
47 7 0.03
48 208 0.78
49 11 0.04
50 34 0.13
51 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (49 bp):
GATGCCATGTCCAGACATGGTCTTACACTAGCTCTCACATATCAAGGCC
Found at i:60822587 original size:96 final size:96
Alignment explanation
Indices: 60822390--60822767 Score: 569
Period size: 96 Copynumber: 3.9 Consensus size: 96
60822380 GTAAGATGCT
*
60822390 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGATGCCGATGCCATGTTCCAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--ATATCAATGCCGATGCCATGTTCCAA
* * *
60822455 ACATGGTCTTACACTAGC-CTACATGTCGAGGTC
64 ACATGGTCTTACACTGGCTC-ACATATCGAGGCC
* * *
60822488 GATGCCTTGTCCTAGACATGGTCTTACACTAGCTCTCATATCAATGCTGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
*
60822553 ATGGTCTTACACTGGCTCACATATCAAGGCC
66 ATGGTCTTACACTGGCTCACATATCGAGGCC
* * *
60822584 GATGCCATATCCCAGACATGGTCTTATACTAGCTCTCATATCAATGCCGATGTCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
* *
60822649 ATCGTCTTACACTGGCTCACATATCGAGACC
66 ATGGTCTTACACTGGCTCACATATCGAGGCC
* * **
60822680 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATGCTGATGTAATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
60822745 ATGGTCTTACACTGGCTCACATA
66 ATGGTCTTACACTGGCTCACATA
60822768 ACCCTAGTAT
Statistics
Matches: 256, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
96 220 0.86
97 1 0.00
98 35 0.14
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.29
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTTCCAAAC
ATGGTCTTACACTGGCTCACATATCGAGGCC
Found at i:60822656 original size:144 final size:144
Alignment explanation
Indices: 60822385--60822757 Score: 419
Period size: 144 Copynumber: 2.6 Consensus size: 144
60822375 AAAGGGTAAG
* * * * *
60822385 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCGATGCCGATGCCATGT
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCACATATCAAGGCCGATGCCATAT
* * * * * * *
60822450 TCCAAACATGGTCTTACACTAGCCTACATGTCGAGGTCGATGCCTTGTCCTAGACATGGTCTTAC
64 CCCAAACATGGTCTTACACTAGCCTACATATCAAGGCCGATGCCATGTCCTAAACATCGTCTTAC
*
60822515 ACTAGCTCTCATATCA
129 ACTAGCTCACATATCA
* *
60822531 ATGCTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCAAGGCCGATGCCATATCC
1 ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAGGCCGATGCCATATCC
* * * *
60822596 CAGACATGGTCTTATACTAGCTCT-CATATCAATGCCGATGTCATGTTCC-AAACATCGTCTTAC
66 CAAACATGGTCTTACACTAGC-CTACATATCAAGGCCGATGCCATG-TCCTAAACATCGTCTTAC
* *
60822659 ACTGGCTCACATATCG
129 ACTAGCTCACATATCA
* * * * ** * *
60822675 A-GACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATGCTGATGTAATGTT
1 ATG-CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAGGCCGATGCCATATC
60822739 CCAAACATGGTCTTACACT
65 CCAAACATGGTCTTACACT
60822758 GGCTCACATA
Statistics
Matches: 191, Mismatches: 33, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
143 1 0.01
144 151 0.79
145 6 0.03
146 33 0.17
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (144 bp):
ATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAAGGCCGATGCCATATCC
CAAACATGGTCTTACACTAGCCTACATATCAAGGCCGATGCCATGTCCTAAACATCGTCTTACAC
TAGCTCACATATCA
Found at i:60825793 original size:18 final size:19
Alignment explanation
Indices: 60825761--60825797 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
60825751 TGGTCTCGAT
60825761 TTTTCTAAAGGTATCAATA
1 TTTTCTAAAGGTATCAATA
*
60825780 TTTTC-AAAGTTATCAATA
1 TTTTCTAAAGGTATCAATA
60825798 CTTGTCCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (19 bp):
TTTTCTAAAGGTATCAATA
Found at i:60825890 original size:20 final size:20
Alignment explanation
Indices: 60825859--60825910 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
60825849 TAAAAAAAAT
*
60825859 TTAAAATGATTTTAACATGA
1 TTAAAATCATTTTAACATGA
* * * *
60825879 TTGAAATCATTTTGACTTGG
1 TTAAAATCATTTTAACATGA
60825899 TTAAAATCATTT
1 TTAAAATCATTT
60825911 GCACTTGATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.44
Consensus pattern (20 bp):
TTAAAATCATTTTAACATGA
Found at i:60827513 original size:33 final size:33
Alignment explanation
Indices: 60827467--60827537 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
60827457 AAATTCATAT
* *
60827467 ATCATGTATATCATTTGTAACATTTCACTCTCA
1 ATCATGTACATCATTTGAAACATTTCACTCTCA
60827500 ATCATGTACATCATTTGAAACATTTCACTCTCA
1 ATCATGTACATCATTTGAAACATTTCACTCTCA
60827533 ATCAT
1 ATCAT
60827538 ATAAACAGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.32, C:0.23, G:0.06, T:0.39
Consensus pattern (33 bp):
ATCATGTACATCATTTGAAACATTTCACTCTCA
Found at i:60831785 original size:143 final size:143
Alignment explanation
Indices: 60831592--60832009 Score: 597
Period size: 143 Copynumber: 2.9 Consensus size: 143
60831582 TATCCATAAC
* * * * *
60831592 TTGTAGCTTTAATCTACTCCGCTGCAATTTCAGGGAAATAAGATTAGCTATCTTCAATCTGCTCC
1 TTGTAGCTTTAATCTATTCCACTGCAATGTCAGGGAAATAAGATTAGCTATCTCCAGTCTGCTCC
* *
60831657 GCTGCAACTTCAAGGAGATAAGGCTGATGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAA
66 GCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
*
60831722 GATTTGTCA-CAAT
131 GATTTGCCATC-AT
* * * * *
60831735 TTGTAGCTTTAATTTGTTCCACTGCAACGTCAGGGAAATAAGATTCGCTATCTCCAGTCTACTCC
1 TTGTAGCTTTAATCTATTCCACTGCAATGTCAGGGAAATAAGATTAGCTATCTCCAGTCTGCTCC
* * *
60831800 GCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGTAACTTTAGGAAGATAA
66 GCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
60831865 GATTTGCCATCAT
131 GATTTGCCATCAT
* * ** *
60831878 TTATAGCTTTAATCTATTCCACTTCAATGTCAGGGAAATAAGATTTTCTGTCTCCAGTCTGCT-C
1 TTGTAGCTTTAATCTATTCCACTGCAATGTCAGGGAAATAAGATTAGCTATCTCCAGTCTGCTCC
* * *
60831942 GCTGCAACTTCAAGGAGATAAGGCTGGTGGTTTCAATTTGCTCCACTGCAACTTCTGGAAGATAA
66 GCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
60832007 GAT
131 GAT
60832010 CTGTTATCTT
Statistics
Matches: 243, Mismatches: 31, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
142 63 0.26
143 179 0.74
144 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (143 bp):
TTGTAGCTTTAATCTATTCCACTGCAATGTCAGGGAAATAAGATTAGCTATCTCCAGTCTGCTCC
GCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAA
GATTTGCCATCAT
Found at i:60831991 original size:44 final size:44
Alignment explanation
Indices: 60831935--60832177 Score: 150
Period size: 44 Copynumber: 5.5 Consensus size: 44
60831925 CTGTCTCCAG
*
60831935 TCTGCT-CGCTGCAACTTCAAGGAGATAAGGCTGGTGGTTTCAA
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGTTTCAA
* * * ** *
60831978 TTTGCTCCACTGCAACTTC-TGGAAGATAAGATCT-GTTATCTTCAG
1 TCTGCTCCACTGCAACTTCAAGG-AGATAAG-GCTGGTGGT-TTCAA
** * * *
60832023 TCTGCTCTGCTGCAACATCAGGGAGATAAGGCTGGTGGCTTCAA
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGTTTCAA
* * * ** * ** * *** *
60832067 TCTGCTTCATTACAACTTCAAAAATATAAGATTCGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGT-TTCAA
* * *
60832112 TCTGCTCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAA
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGTTTCAA
* * *
60832156 TCTACTTCACTACAACTTCAAG
1 TCTGCTCCACTGCAACTTCAAG
60832178 AAAATAAGAT
Statistics
Matches: 137, Mismatches: 56, Indels: 13
0.67 0.27 0.06
Matches are distributed among these distances:
43 7 0.05
44 70 0.51
45 58 0.42
46 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGTTTCAA
Found at i:60832058 original size:89 final size:88
Alignment explanation
Indices: 60831932--60832188 Score: 320
Period size: 89 Copynumber: 2.9 Consensus size: 88
60831922 TTTCTGTCTC
* * * * *
60831932 CAGTCTGCTCGCTGCAACTTCAAGGAGATAAGGCTGGTGGTTTCAATTTGCTCCACTGCAACTTC
1 CAGTCTGCTCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTACAACTTC
*** **
60831997 TGGAAGATAAGA-TCTGTTATCTT
66 AAAAAGATAAGATTC-GCCATCTT
* *
60832020 CAGTCTGCTCTGCTGCAACATCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCATTACAACTT
1 CAGTCTGCTC-GCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTACAACTT
*
60832085 CAAAAATATAAGATTCGCCATCTT
65 CAAAAAGATAAGATTCGCCATCTT
* * *
60832109 CAGTCTGCTCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTACAACTT
1 CAGTCTGCT-CGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTACAACTT
60832174 CAAGAAA-ATAAGATT
65 CAA-AAAGATAAGATT
60832189 TGTCATAATT
Statistics
Matches: 147, Mismatches: 18, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
88 10 0.07
89 131 0.89
90 6 0.04
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (88 bp):
CAGTCTGCTCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTACAACTTC
AAAAAGATAAGATTCGCCATCTT
Found at i:60832207 original size:320 final size:320
Alignment explanation
Indices: 60831770--60832425 Score: 868
Period size: 320 Copynumber: 2.0 Consensus size: 320
60831760 AACGTCAGGG
* *
60831770 AAATAAGATTCGCTATCTCCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCA
1 AAATAAGATTCGCCATCTCCAGTCTACTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCA
* ** * * * * * *
60831835 ATCTGCTCCACTGTAACTTTAGGAAGATAAGATTTGCCATCATTTATAGCTTTAATCTATTCCAC
66 ATCTACTCCACTACAACTTCAAGAAAATAAGATTTGCCATAATTTATAGCTTTAATATACTCCAC
* ** * ** *
60831900 TTCAATGTCAGGGAAATAAGATTTTCTGTCTCCAGTCTGCT-CGCTGCAACTTCA-AGGAGATAA
131 TGCAACATCAAGGAAATAAGATTCACTGTCTCCAGTCTACTCCGCTGCAACTTCAGA-GAGATAA
* * * * * **
60831963 GGCTGGTGGTTTCAATTTGCTCCACTGCAACTTCTGGAAGATAAGATCTGTTATCTTCAGTCTGC
195 GGCCGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCTGCCATCTTCAGTCTGC
* * * *
60832028 TCTGCTGCAACATCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCATTACAACTTCA-AA
260 TCCGCT-CAACATCAGGGAGATAAGGCTAGTGGCTTCAATCTACTTCACTACAACTTCAGAA
* * *
60832089 AATATAAGATTCGCCATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTC
1 AA-ATAAGATTCGCCATCTCCAGTCTACTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
* * * *
60832154 AATCTACTTCACTACAACTTCAAGAAAATAAGATTTGTCATAATTTGTAGCTTTAATATGCTCCA
65 AATCTACTCCACTACAACTTCAAGAAAATAAGATTTGCCATAATTTATAGCTTTAATATACTCCA
*
60832219 CTGCAACATCAAGGAAATAAGATTCACTGTCTTCAGTCTACTCCGCTGCAACTTCAGAGAGATAA
130 CTGCAACATCAAGGAAATAAGATTCACTGTCTCCAGTCTACTCCGCTGCAACTTCAGAGAGATAA
* * *
60832284 GGCCGGTGGCTTCAATCTGCTCCATTACAACTTCAGGAATATAAGATTTGCCATCTTCAGTCTGC
195 GGCCGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCTGCCATCTTCAGTCTGC
* * *
60832349 TCCGCTCAACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTACTTCACTGCAACTTCAGGA
260 TCCGCTCAACATCAGGGAGATAAGGCTAGTGGCTTCAATCTACTTCACTACAACTTCAGAA
*
60832410 AAATGAGATTCGCCAT
1 AAATAAGATTCGCCAT
60832426 AATTTGTAGC
Statistics
Matches: 289, Mismatches: 44, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
319 2 0.01
320 203 0.70
321 83 0.29
322 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (320 bp):
AAATAAGATTCGCCATCTCCAGTCTACTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCA
ATCTACTCCACTACAACTTCAAGAAAATAAGATTTGCCATAATTTATAGCTTTAATATACTCCAC
TGCAACATCAAGGAAATAAGATTCACTGTCTCCAGTCTACTCCGCTGCAACTTCAGAGAGATAAG
GCCGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAAGATCTGCCATCTTCAGTCTGCT
CCGCTCAACATCAGGGAGATAAGGCTAGTGGCTTCAATCTACTTCACTACAACTTCAGAA
Found at i:60832384 original size:88 final size:89
Alignment explanation
Indices: 60832214--60832425 Score: 257
Period size: 88 Copynumber: 2.4 Consensus size: 89
60832204 CTTTAATATG
* * * **
60832214 CTCCACTGCAACATCAAGG-AAATAAGATTCACTGTCTTCAGTCTACTCCGCTGCAACTTCAGAG
1 CTCCACTACAACTTC-AGGAAAATAAGATTCGCCATCTTCAGTCTACTCCGCTGCAACTTCAGAG
* *
60832278 AGATAAGGCCGGTGGCTTCAATCTG
65 AGATAAGGCCAGTGGCTTCAATCTA
* * * * *
60832303 CTCCATTACAACTTCAGGAATATAAGATTTGCCATCTTCAGTCTGCTCCGCT-CAACTTCAGGGA
1 CTCCACTACAACTTCAGGAAAATAAGATTCGCCATCTTCAGTCTACTCCGCTGCAACTTCAGAGA
*
60832367 GATAAGGCTAGTGGCTTCAATCTA
66 GATAAGGCCAGTGGCTTCAATCTA
* * *
60832391 CTTCACTGCAACTTCAGGAAAATGAGATTCGCCAT
1 CTCCACTACAACTTCAGGAAAATAAGATTCGCCAT
60832426 AATTTGTAGC
Statistics
Matches: 103, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
88 64 0.62
89 39 0.38
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (89 bp):
CTCCACTACAACTTCAGGAAAATAAGATTCGCCATCTTCAGTCTACTCCGCTGCAACTTCAGAGA
GATAAGGCCAGTGGCTTCAATCTA
Found at i:60832476 original size:231 final size:232
Alignment explanation
Indices: 60831597--60832792 Score: 1194
Period size: 231 Copynumber: 5.2 Consensus size: 232
60831587 ATAACTTGTA
* * * * * * *
60831597 GCTTTAATCTACTCCGCTGCAATTTCAGGGAA-ATAAGATTAGCTATCTTCAATCTGCTCCGCTG
1 GCTTCAATCTGCTCCACTGCAACTTCA-GGAAGATAAGATTTGCCATCTTCAGTCTGCTCCGCTG
* * * *
60831661 CAACTTCAAGGAGATAAGGCTGATGGCTTCAATCTACTCCACTGCAACTTCAGGAAGATAAGATT
65 CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAGGAAAATAAGATT
* * * * * * *
60831726 TGTCACAATTTGTAGCTTTAATTTGTTCCACTGCAACGTCAGGGAAATAAGATTCGCTATCTCCA
130 CGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACATCAGGGAAATAAGATTCGCTGTCTTCA
*
60831791 GTCTACTCCGCTGCAACTTCAGGGAGATAAGGCTGGTG
195 GTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTG
* * * *
60831829 GCTTCAATCTGCTCCACTGTAACTTTAGGAAGATAAGATTTGCCATCATTTATAGCTTTAATCTA
1 GCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATC---T-T--C---AGTCTG
* * * * ** ** * * * * *
60831894 TTCCACTTCAA-TGTCAGGGAAATAAGATTTTCTGTCTCCAGTCTGC-TCGCTGCAACTTCAAGG
57 CTCCGCTGCAACT-TCAGGGAGATAAG-GCTGGTGGCTTCAATCTACTTCACTGCAACTTC-AGG
* * * * * * *
60831957 -AGATAAG----G-C-----TGGT-GGTTTCAATTTGCTCCACTGCAACTTC-TGGAAGATAAGA
119 AAAATAAGATTCGCCATAATTTGTAGCTTT-AATCTGTTCCACTGCAACATCAGGGAA-ATAAGA
* * * *
60832009 -TCTGTTATCTTCAGTCTGCTCTGCTGCAACATCAGGGAGATAAGGCTGGTG
182 TTC-GCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTG
* * * ** * * *
60832060 GCTTCAATCTGCTTCATTACAACTTCAAAAATATAAGATTCGCCATCTTCAGTCTGCTCCACTGC
1 GCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCTCCGCTGC
* * * *
60832125 AACTTTAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTACAACTTCAAGAAAATAAGATTT
66 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAGGAAAATAAGATTC
* * * * *
60832190 GTCATAATTTGTAGCTTTAATATGCTCCACTGCAACATCAAGGAAATAAGATTCACTGTCTTCAG
131 GCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACATCAGGGAAATAAGATTCGCTGTCTTCAG
* * *
60832255 TCTACTCCGCTGCAACTTCAGAGAGATAAGGCCGGTG
196 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTG
* * *
60832292 GCTTCAATCTGCTCCATTACAACTTCAGGAATATAAGATTTGCCATCTTCAGTCTGCTCCGCT-C
1 GCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCTCCGCTGC
* *
60832356 AACTTCAGGGAGATAAGGCTAGTGGCTTCAATCTACTTCACTGCAACTTCAGGAAAATGAGATTC
66 AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAGGAAAATAAGATTC
* *
60832421 GCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGATTCACTGTCTTCAG
131 GCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACATCAGGGAAATAAGATTCGCTGTCTTCAG
** *
60832486 TCTGCTCCGCTATAACTTTAGAGG-GATAAGGCTGGTG
196 TCTGCTCCGCTGCAACTTCAG-GGAGATAAGGCTGGTG
* * * * *
60832523 GCTTCAATCTACTCCACTGCAACTTCAAGAAGATAAGATCTT-CTATCTTCAGTCTACTCAGCTG
1 GCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGAT-TTGCCATCTTCAGTCTGCTCCGCTG
* * * * * *
60832587 CAACTTCAAGGAGTTAA-GCTGGTGGCTTCAATCTGCTCCACTACAACTCCA-GAAAGATAAGAT
65 CAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAGGAAA-ATAAGAT
* * * *
60832650 TCTCCATAATTTGTAGCTTTAATCTATTCCACTGTAACATCAGGGAAATAAGATTTGCTGTCTTC
129 TCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACATCAGGGAAATAAGATTCGCTGTCTTC
* * *
60832715 AGTCTGCTTCACTGTAACTTCAGGGAGATAAGGCTGGTG
194 AGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTG
* *
60832754 GCTTCAATCTGCTTCACTGCGACTTCAGGAAGATAAGAT
1 GCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGAT
60832793 CTACCATATT
Statistics
Matches: 801, Mismatches: 126, Indels: 75
0.80 0.13 0.07
Matches are distributed among these distances:
221 13 0.02
222 41 0.05
223 1 0.00
225 1 0.00
226 1 0.00
227 2 0.00
228 1 0.00
230 16 0.02
231 475 0.59
232 178 0.22
233 10 0.01
235 1 0.00
236 2 0.00
237 1 0.00
238 1 0.00
240 1 0.00
241 42 0.05
242 14 0.02
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (232 bp):
GCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCTCCGCTGC
AACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTACTTCACTGCAACTTCAGGAAAATAAGATTC
GCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACATCAGGGAAATAAGATTCGCTGTCTTCAG
TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTG
Found at i:60832516 original size:463 final size:458
Alignment explanation
Indices: 60831629--60832792 Score: 1273
Period size: 463 Copynumber: 2.5 Consensus size: 458
60831619 TTTCAGGGAA
* * * *
60831629 ATAAGATTAGCTATCTTCAATCTGCTCCGCTGCAACTTCAAGGAGATAAGGCTGATGGCTTCAAT
1 ATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAAT
* * * * *
60831694 CTACTCCACTGCAACTTCAGGAAGATAAGATTTGTCACAATTTGTAGCTTTAATTTGTTCCACTG
66 CTACTCCACTACAACTTCAAGAAAATAAGATTTGTCATAATTTGTAGCTTTAATATGTTCCACTG
* * *
60831759 CAACGTCAGGGAAATAAGATTCGCTATCTCCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGC
131 CAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGC
* *
60831824 TGGTGGCTTCAATCTGCTCCACTGTAACTTTAGGAAGATAAGATTTGCCATCATTTATAGCTTTA
196 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATC--TTATA-C--TA
* ** * * * * *
60831889 ATCTATTCCACTTCAATGTCAGGGAAATAAGATTTTCTGTCTCCAGTCTGCTCGCTGCAACTTCA
256 ATCTACTCCACTTCAATGTCAGGGAAATAAGAGCTACTGGCTCCAATCTACTCACTGCAACTTCA
* * * * * * **
60831954 AGGAGATAAGGCTGGTGGTTTCAATTTGCTCCACTGCAACTTCTGGAAGATAAGATCTGTTATCT
321 AGGAAATAAGCCTGGTGCTTTCAATCTGCTCCACTGCAACGTCGGGAAGATAAGATCTACTATCT
* * * * *
60832019 TCAGTCTGCTCTGCTGCAACATCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCATTACAACT
386 TCAGTCTGCTCCGCTACAACATCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTACAACT
*
60832084 TCAAAAAT
451 TCAAAAAG
* * *
60832092 ATAAGATTCGCCATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAAT
1 ATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAAT
* *
60832157 CTACTTCACTACAACTTCAAGAAAATAAGATTTGTCATAATTTGTAGCTTTAATATGCTCCACTG
66 CTACTCCACTACAACTTCAAGAAAATAAGATTTGTCATAATTTGTAGCTTTAATATGTTCCACTG
* * *
60832222 CAACATCAAGGAAATAAGATTCACTGTCTTCAGTCTACTCCGCTGCAACTTCAGAGAGATAAGGC
131 CAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGC
* * * * * *
60832287 CGGTGGCTTCAATCTGCTCCATTACAACTTCAGGAATATAAGATTTGCCATC-T-T-C-AGTCTG
196 TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTATACTAATCTA
* * * *
60832348 CTCCGC-TCAACT-TCAGGGAGATAAG-GCTAGTGGCTTCAATCTACTTCACTGCAACTTC-AGG
261 CTCCACTTCAA-TGTCAGGGAAATAAGAGCTACTGGCTCCAATCTAC-TCACTGCAACTTCAAGG
* *
60832409 AAAATGAGATTCGCCATAATTTGTAGCTTT-AATCTGTTCCACTGCAACGTCAGGGAA-ATAAGA
324 -AAAT-A-A---GCC-----TGGT-GCTTTCAATCTGCTCCACTGCAACGTC-GGGAAGATAAGA
* * * *
60832472 T-TCACTGTCTTCAGTCTGCTCCGCTATAACTTTAGAGG-GATAAGGCTGGTGGCTTCAATCTAC
376 TCT-ACTATCTTCAGTCTGCTCCGCTACAACATCAG-GGAGATAAGGCTGGTGGCTTCAATCTAC
* *
60832535 TCCACTGCAACTTCAAGAAG
439 TCCACTACAACTTCAAAAAG
* * *
60832555 ATAAGA-TCTTCTATCTTCAGTCTACT-CAGCTGCAACTTCAAGGAGTTAA-GCTGGTGGCTTCA
1 ATAAGATTC-GCTATCTTCAGTCTGCTCCA-CTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCA
* * * * *
60832617 ATCTGCTCCACTACAAC-TCCAGAAAGATAAGATTCT-CCATAATTTGTAGCTTTAATCTATTCC
64 ATCTACTCCACTACAACTTCAAGAAA-ATAAGATT-TGTCATAATTTGTAGCTTTAATATGTTCC
* * * * * *
60832680 ACTGTAACATCAGGGAAATAAGATTTGCTGTCTTCAGTCTGCTTCACTGTAACTTCAGGGAGATA
127 ACTGCAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATA
* *
60832745 AGGCTGGTGGCTTCAATCTGCTTCACTGCGACTTCAGGAAGATAAGAT
192 AGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGAT
60832793 CTACCATATT
Statistics
Matches: 590, Mismatches: 90, Indels: 43
0.82 0.12 0.06
Matches are distributed among these distances:
452 14 0.02
453 31 0.05
454 10 0.02
455 1 0.00
457 1 0.00
458 2 0.00
459 1 0.00
460 1 0.00
461 7 0.01
462 162 0.27
463 350 0.59
464 10 0.02
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (458 bp):
ATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAAT
CTACTCCACTACAACTTCAAGAAAATAAGATTTGTCATAATTTGTAGCTTTAATATGTTCCACTG
CAACATCAGGGAAATAAGATTCGCTGTCTTCAGTCTACTCCGCTGCAACTTCAGGGAGATAAGGC
TGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTATACTAATCTA
CTCCACTTCAATGTCAGGGAAATAAGAGCTACTGGCTCCAATCTACTCACTGCAACTTCAAGGAA
ATAAGCCTGGTGCTTTCAATCTGCTCCACTGCAACGTCGGGAAGATAAGATCTACTATCTTCAGT
CTGCTCCGCTACAACATCAGGGAGATAAGGCTGGTGGCTTCAATCTACTCCACTACAACTTCAAA
AAG
Found at i:60832561 original size:89 final size:88
Alignment explanation
Indices: 60832446--60832652 Score: 224
Period size: 89 Copynumber: 2.3 Consensus size: 88
60832436 TTTAATCTGT
* * * * * *
60832446 TCCACTGCAACGTCAGGGAA-ATAAGATTC-ACTGTCTTCAGTCTGCTCCGCTATAACTTTAGAG
1 TCCACTGCAAC-TCA-AGAAGATAAGATTCTACTATCTTCAGTCTACTCAGCTACAACTTCA-AG
60832509 G-GATAAGGCTGGTGGCTTCAATCTAC
63 GAGATAA-GCTGGTGGCTTCAATCTAC
* *
60832535 TCCACTGCAACTTCAAGAAGATAAGA-TCTTCTATCTTCAGTCTACTCAGCTGCAACTTCAAGGA
1 TCCACTGCAAC-TCAAGAAGATAAGATTCTACTATCTTCAGTCTACTCAGCTACAACTTCAAGGA
* *
60832599 GTTAAGCTGGTGGCTTCAATCTGC
65 GATAAGCTGGTGGCTTCAATCTAC
* *
60832623 TCCACTACAACTCCAGAAAGATAAGATTCT
1 TCCACTGCAACTCAAG-AAGATAAGATTCT
60832653 CCATAATTTG
Statistics
Matches: 100, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
87 4 0.04
88 45 0.45
89 51 0.51
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (88 bp):
TCCACTGCAACTCAAGAAGATAAGATTCTACTATCTTCAGTCTACTCAGCTACAACTTCAAGGAG
ATAAGCTGGTGGCTTCAATCTAC
Found at i:60832730 original size:45 final size:44
Alignment explanation
Indices: 60832679--60832772 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
60832669 TAATCTATTC
** * *
60832679 CACTGTAACATCAGGGAAATAAGATTTGCTGTCTTCAGTCTGCTT
1 CACTGTAACATCAGGGAAATAAG-GCTGCTGGCTTCAATCTGCTT
* * *
60832724 CACTGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTT
1 CACTGTAACATCAGGGAAATAAGGCTGCTGGCTTCAATCTGCTT
60832768 CACTG
1 CACTG
60832773 CGACTTCAGG
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 21 0.50
45 21 0.50
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (44 bp):
CACTGTAACATCAGGGAAATAAGGCTGCTGGCTTCAATCTGCTT
Found at i:60832804 original size:142 final size:142
Alignment explanation
Indices: 60832523--60832804 Score: 349
Period size: 142 Copynumber: 2.0 Consensus size: 142
60832513 AAGGCTGGTG
*
60832523 GCTTCAATCTACTCCACTGCAACTTCAAGAAGATAAGATCTTCTATCTTCAGTCTACTCAGCTGC
1 GCTTCAATCTACTCCACTGCAACATCAAGAAGATAAGATCTTCTATCTTCAGTCTACTCAGCTGC
*
60832588 AACTTCAAGGAGTTAAGCTGGTGGCTTCAATCTGCTCCACTACAACTCCAGAAAGATAAGATTCT
66 AACTTCAAGGAGATAAGCTGGTGGCTTCAATCTGCTCCACTACAACTCCAGAAAGATAAGATTCT
60832653 CCATAATTTGTA
131 CCATAATTTGTA
* * * * * *
60832665 GCTTTAATCTATTCCACTGTAACATCAGGGAA-ATAAGAT-TTGCTGTCTTCAGTCTGCTTCA-C
1 GCTTCAATCTACTCCACTGCAACATCA-AGAAGATAAGATCTT-CTATCTTCAGTCTAC-TCAGC
* * * * * * *
60832727 TGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCGACTTCAGGAAGATAAGA
63 TGCAACTTCAAGGAGATAA-GCTGGTGGCTTCAATCTGCTCCACTACAACTCCAGAAAGATAAGA
60832792 -TCTACCAT-ATTTG
127 TTCT-CCATAATTTG
60832805 ATCTACTCCA
Statistics
Matches: 120, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
141 2 0.02
142 68 0.57
143 50 0.42
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (142 bp):
GCTTCAATCTACTCCACTGCAACATCAAGAAGATAAGATCTTCTATCTTCAGTCTACTCAGCTGC
AACTTCAAGGAGATAAGCTGGTGGCTTCAATCTGCTCCACTACAACTCCAGAAAGATAAGATTCT
CCATAATTTGTA
Found at i:60834433 original size:22 final size:22
Alignment explanation
Indices: 60834408--60834468 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
60834398 ATACGTTTGC
*
60834408 CACACAGCCATAATCAGGTTGG
1 CACAAAGCCATAATCAGGTTGG
* *
60834430 CACAGAGCCAT-ATGTAGGTTGG
1 CACAAAGCCATAAT-CAGGTTGG
**
60834452 TGCAAAGCCATAATCAG
1 CACAAAGCCATAATCAG
60834469 AATAATTGGC
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
21 2 0.06
22 27 0.87
23 2 0.06
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.20
Consensus pattern (22 bp):
CACAAAGCCATAATCAGGTTGG
Found at i:60834669 original size:41 final size:41
Alignment explanation
Indices: 60834610--60834728 Score: 204
Period size: 41 Copynumber: 2.9 Consensus size: 41
60834600 TAAAAGCGAC
*
60834610 CGGTGGATCCACGATCGTCAAGCAACCATGTGATCCTTAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAAT
*
60834651 CGGTGGATCCA-TAGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGA-TCGTCAAGCAACCATGCGATCCTTAAT
60834692 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCT
60834729 CAATTTCTTC
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
40 1 0.01
41 71 0.97
42 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAAT
Found at i:60835013 original size:27 final size:27
Alignment explanation
Indices: 60834982--60835040 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
60834972 AAGGTGTTTT
60834982 GGTAAATCTACAAACCAA-GGTTATTTC
1 GGTAAATCTACAAACCAATGG-TATTTC
* * *
60835009 GGTAATTTTGCAAACCAATGGTATTTC
1 GGTAAATCTACAAACCAATGGTATTTC
*
60835036 TGTAA
1 GGTAA
60835041 TTTTTTGAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (27 bp):
GGTAAATCTACAAACCAATGGTATTTC
Found at i:60835041 original size:27 final size:27
Alignment explanation
Indices: 60834992--60835044 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
60834982 GGTAAATCTA
60834992 CAAACCAAGGTTATTTCGGTAATTTTG
1 CAAACCAAGGTTATTTCGGTAATTTTG
*
60835019 CAAACCAATGG-TATTTCTGTAATTTT
1 CAAACCAA-GGTTATTTCGGTAATTTT
60835045 TTGAAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (27 bp):
CAAACCAAGGTTATTTCGGTAATTTTG
Found at i:60835094 original size:27 final size:27
Alignment explanation
Indices: 60835036--60835168 Score: 108
Period size: 27 Copynumber: 4.9 Consensus size: 27
60835026 ATGGTATTTC
* * * *
60835036 TGTAATTTTTTGAAAGTCAAGGGTATTTT
1 TGTAATTTTGT-AAA-TTAAGGGTACTCT
60835065 TGTAATTTTGTAAATT-AGGGATACTCT
1 TGTAATTTTGTAAATTAAGGG-TACTCT
* *
60835092 TGTAATTTTGTAAATTAAGGGTATTCC
1 TGTAATTTTGTAAATTAAGGGTACTCT
* * *
60835119 TGTAATTTTCTAAATCAAGGGTA-TTT
1 TGTAATTTTGTAAATTAAGGGTACTCT
** *
60835145 TGATAATTTTACAAATTGAGGGTA
1 TG-TAATTTTGTAAATTAAGGGTA
60835169 TTTCGATAAT
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
26 7 0.08
27 63 0.72
28 7 0.08
29 10 0.11
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (27 bp):
TGTAATTTTGTAAATTAAGGGTACTCT
Found at i:60835152 original size:54 final size:53
Alignment explanation
Indices: 60834998--60835293 Score: 212
Period size: 54 Copynumber: 5.5 Consensus size: 53
60834988 TCTACAAACC
* * * * ** *
60834998 AAGGTTATTTCGGTAATTTTGC-AAACCAATGGTATTTCTGTAATTTTTTGAAAGTC
1 AAGGGTATTTCTGTAATTTT-CTAAATCAAGGGTATTT-TGTAA-TTTTACAAA-TT
* * * * **
60835054 AAGGGTATTTTTGTAATTTTGTAAAT-TAGGGATACTCTTGTAATTTTGTAAATT
1 AAGGGTATTTCTGTAATTTTCTAAATCAAGGG-TA-TTTTGTAATTTTACAAATT
*
60835108 AAGGGTATTCCTGTAATTTTCTAAATCAAGGGTATTTTGATAATTTTACAAATT
1 AAGGGTATTTCTGTAATTTTCTAAATCAAGGGTATTTTG-TAATTTTACAAATT
* * * *
60835162 GAGGGTATTTC-GATAATTTTAC-AAATCGAGGGTATTTCGATAATTTCACAAA-T
1 AAGGGTATTTCTG-TAATTTT-CTAAATCAAGGGTATTTTG-TAATTTTACAAATT
* * *
60835215 AATGGGTATTT-TGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTACAAATT
1 AA-GGGTATTTCT-GTAATTTTCTAAATCAAGGGTATTTT-GTAATTTTACAAATT
60835270 -AGGGTATTT-TGGTAATTTTGCTAA
1 AAGGGTATTTCT-GTAATTTT-CTAA
60835294 TCGAGGGCAT
Statistics
Matches: 195, Mismatches: 31, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
53 25 0.13
54 123 0.63
55 18 0.09
56 27 0.14
57 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.43
Consensus pattern (53 bp):
AAGGGTATTTCTGTAATTTTCTAAATCAAGGGTATTTTGTAATTTTACAAATT
Found at i:60835169 original size:27 final size:26
Alignment explanation
Indices: 60835054--60835288 Score: 181
Period size: 27 Copynumber: 8.7 Consensus size: 26
60835044 TTTGAAAGTC
**
60835054 AAGGGTATTTTTGTAATTTTGTAAATT
1 AAGGGTA-TTTTGTAATTTTACAAATT
* **
60835081 -AGGGATACTCTTGTAATTTTGTAAATT
1 AAGGG-TA-TTTTGTAATTTTACAAATT
* *
60835108 AAGGGTATTCCTGTAATTTT-CTAAATC
1 AAGGGTATT-TTGTAATTTTAC-AAATT
60835135 AAGGGTATTTTGATAATTTTACAAATT
1 AAGGGTATTTTG-TAATTTTACAAATT
* * *
60835162 GAGGGTATTTCGATAATTTTACAAATC
1 AAGGGTATTTTG-TAATTTTACAAATT
* * *
60835189 GAGGGTATTTCGATAATTTCACAAA-T
1 AAGGGTATTTTG-TAATTTTACAAATT
* **
60835215 AATGGGTATTTTGGTAATTTTATAAACC
1 AA-GGGTATTTT-GTAATTTTACAAATT
*
60835243 AGGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTT-GTAATTTTACAAATT
60835270 -AGGGTATTTTGGTAATTTT
1 AAGGGTATTTT-GTAATTTT
60835289 GCTAATCGAG
Statistics
Matches: 176, Mismatches: 23, Indels: 19
0.81 0.11 0.09
Matches are distributed among these distances:
26 26 0.15
27 143 0.81
28 7 0.04
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (26 bp):
AAGGGTATTTTGTAATTTTACAAATT
Found at i:60835206 original size:81 final size:79
Alignment explanation
Indices: 60835003--60835293 Score: 245
Period size: 81 Copynumber: 3.6 Consensus size: 79
60834993 AAACCAAGGT
* * * *
60835003 TATTTCGGTAATTTTGCAAACCAATGGTATTTCTGTAATTTTTTGAAAGTCAAGGGTATTTTTGT
1 TATTTCGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTTCT-AAA-TCAAGGGTA-TTTTGT
*
60835068 AATTTTGTAAATTAGGG
63 AATTTTATAAATTAGGG
** * *
60835085 ATACTCTT--GTAATTTTGTAAATTAAGGGTATTCCTGTAATTTTCTAAATCAAGGGTATTTTGA
1 -TA-T-TTCGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTTCTAAATCAAGGGTATTTTG-
*
60835148 TAATTTTACAAATTGAGGG
62 TAATTTTATAAATT-AGGG
* * *
60835167 TATTTCGATAATTTTACAAATCGAGGGTATTTC-GATAA-TTTCACAAAT-AATGGGTATTTTGG
1 TATTTCGGTAATTTTACAAATCAAGGGTATTTCTG-TAATTTTC-TAAATCAA-GGGTATTTT-G
**
60835229 TAATTTTATAAACCAGGGG
62 TAATTTTATAAATTA-GGG
* *
60835248 TATTTTGGTAATTTTACAAAT-TAGGGTATTT-TGGTAATTTTGCTAA
1 TATTTCGGTAATTTTACAAATCAAGGGTATTTCT-GTAATTTT-CTAA
60835294 TCGAGGGCAT
Statistics
Matches: 171, Mismatches: 22, Indels: 32
0.76 0.10 0.14
Matches are distributed among these distances:
79 2 0.01
80 26 0.15
81 98 0.57
82 9 0.05
83 33 0.19
84 1 0.01
85 2 0.01
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.43
Consensus pattern (79 bp):
TATTTCGGTAATTTTACAAATCAAGGGTATTTCTGTAATTTTCTAAATCAAGGGTATTTTGTAAT
TTTATAAATTAGGG
Found at i:60835338 original size:27 final size:27
Alignment explanation
Indices: 60835297--60835374 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
60835287 TTGCTAATCG
*
60835297 AGGGCA-TTCAATAATTCTACCCTACA
1 AGGGCATTTCAGTAATTCTACCCTACA
*
60835323 AGGGTATTTCAGTAATTCTACCCTACA
1 AGGGCATTTCAGTAATTCTACCCTACA
* * *
60835350 GGGGCATTTCAGTAATACTAGCCTA
1 AGGGCATTTCAGTAATTCTACCCTA
60835375 TAGATATGAG
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
26 5 0.11
27 40 0.89
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (27 bp):
AGGGCATTTCAGTAATTCTACCCTACA
Found at i:60838365 original size:22 final size:22
Alignment explanation
Indices: 60838340--60838404 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
60838330 GTAAATACGT
* *
60838340 TTGGCACACATCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
60838362 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
60838384 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
60838405 AATAATTGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:60838483 original size:32 final size:33
Alignment explanation
Indices: 60838440--60838506 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 33
60838430 ACTGTGTCAT
*
60838440 GTTAGGCACATAGCCACCAGTGACAGTAATATA
1 GTTAGGCACATAGCCACCAGCGACAGTAATATA
**
60838473 GTTAGG-ACATAGCCACCAGCGATGGTAATATA
1 GTTAGGCACATAGCCACCAGCGACAGTAATATA
60838505 GT
1 GT
60838507 CGGCACACAG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
32 25 0.81
33 6 0.19
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.22
Consensus pattern (33 bp):
GTTAGGCACATAGCCACCAGCGACAGTAATATA
Found at i:60838637 original size:41 final size:41
Alignment explanation
Indices: 60838576--60838655 Score: 135
Period size: 41 Copynumber: 2.0 Consensus size: 41
60838566 CTTAAAAGCC
*
60838576 ATCGGTGGATCCACGATCGTCAAGCAACCATGTGATCCTTA
1 ATCGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTA
60838617 ATCGGTGGATCCAC-AGTCGTCAAGCAACCATGCGATCCT
1 ATCGGTGGATCCACGA-TCGTCAAGCAACCATGCGATCCT
60838656 CAATTTCTTC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
40 1 0.03
41 36 0.97
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (41 bp):
ATCGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTA
Found at i:60839081 original size:27 final size:27
Alignment explanation
Indices: 60838957--60839135 Score: 162
Period size: 27 Copynumber: 6.6 Consensus size: 27
60838947 GAAAGTCAAT
* ** *
60838957 GGTATTTCTGTAATTTTGTAAATTAGG
1 GGTATTTCGGTAATTTTACAAATTAAG
* * *
60838984 GGTATTCCTGTAATTTTTCAAATTAAG
1 GGTATTTCGGTAATTTTACAAATTAAG
* *
60839011 GGTATTTCGGTAATTTTCCAAA-TCAG
1 GGTATTTCGGTAATTTTACAAATTAAG
*
60839037 GGATATTTTGGTAATTTTACAAATTAAG
1 GG-TATTTCGGTAATTTTACAAATTAAG
* * * ** *
60839065 GGTTTTTCGATAGTTTTACAGGTCAAG
1 GGTATTTCGGTAATTTTACAAATTAAG
* *
60839092 GGTATTTCGGTAATTTTACAAATCAGG
1 GGTATTTCGGTAATTTTACAAATTAAG
* *
60839119 GGTATTTTGATAATTTT
1 GGTATTTCGGTAATTTT
60839136 GCTAATCAAA
Statistics
Matches: 124, Mismatches: 26, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
26 5 0.04
27 114 0.92
28 5 0.04
ACGTcount: A:0.28, C:0.08, G:0.20, T:0.44
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATTAAG
Found at i:60839142 original size:27 final size:27
Alignment explanation
Indices: 60838897--60839151 Score: 160
Period size: 27 Copynumber: 9.4 Consensus size: 27
60838887 TTTCACCTTA
* * * *
60838897 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
60838924 CAAAGGTATTTCT-GTAATTTTTTGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T
* **
60838953 CAATGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* * * *
60838980 TAGGGGTATTCCT-GTAATTTTTCAAAT
1 CAAGGGTATT-TTGGTAATTTTACAAAT
* * *
60839007 TAAGGGTATTTCGGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
60839034 C-AGGGATATTTTGGTAATTTTACAAAT
1 CAAGGG-TATTTTGGTAATTTTACAAAT
* * * **
60839061 TAAGGGT-TTTTCGATAGTTTTACAGGT
1 CAAGGGTATTTT-GGTAATTTTACAAAT
*
60839088 CAAGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
60839115 CAGGGGTATTTTGATAATTTTGCTAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
60839142 CAAAGGTATT
1 CAAGGGTATT
60839152 CAGTAATTCT
Statistics
Matches: 178, Mismatches: 41, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
26 8 0.04
27 134 0.75
28 20 0.11
29 16 0.09
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:60839224 original size:27 final size:27
Alignment explanation
Indices: 60839146--60839224 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 27
60839136 GCTAATCAAA
*
60839146 GGTA-TTCAGTAATTCTACCCTACAAG
1 GGTATTTCAGTAATTCTACCCTACAGG
* *
60839172 GGCATTACAGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTACAGG
* *
60839199 GGTATTTCAGTAATACTAGCCTACAG
1 GGTATTTCAGTAATTCTACCCTACAG
60839225 ATATGAGATT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
26 3 0.07
27 42 0.93
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCCTACAGG
Found at i:60839433 original size:8 final size:8
Alignment explanation
Indices: 60839420--60839452 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
60839410 TGCTGTGTGA
60839420 TCGGCATT
1 TCGGCATT
60839428 TCGGCATT
1 TCGGCATT
60839436 TCGGCATT
1 TCGGCATT
*
60839444 CCGGCATT
1 TCGGCATT
60839452 T
1 T
60839453 GCCATTCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.12, C:0.27, G:0.24, T:0.36
Consensus pattern (8 bp):
TCGGCATT
Found at i:60848589 original size:12 final size:12
Alignment explanation
Indices: 60848568--60848599 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
60848558 TACTTTACCC
*
60848568 AATTTTTTCAAT
1 AATTTCTTCAAT
60848580 AATTTCTTCAAT
1 AATTTCTTCAAT
60848592 AATTTCTT
1 AATTTCTT
60848600 TTTCTAACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.31, C:0.12, G:0.00, T:0.56
Consensus pattern (12 bp):
AATTTCTTCAAT
Found at i:60849972 original size:16 final size:15
Alignment explanation
Indices: 60849951--60849980 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
60849941 GACATATGAT
60849951 TTCTCATTTTCTTTTC
1 TTCTCATTTT-TTTTC
60849967 TTCTCATTTTTTTT
1 TTCTCATTTTTTTT
60849981 AAAAAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (15 bp):
TTCTCATTTTTTTTC
Found at i:60850876 original size:19 final size:19
Alignment explanation
Indices: 60850834--60850889 Score: 82
Period size: 19 Copynumber: 3.1 Consensus size: 19
60850824 TTCTTCATAA
60850834 GTATATATCAATCATTTCA-
1 GTATATATCAAT-ATTTCAT
60850853 -T-TATATCAATATTTCAT
1 GTATATATCAATATTTCAT
60850870 GTATATATCAATATTTCAT
1 GTATATATCAATATTTCAT
60850889 G
1 G
60850890 CTCCATCATT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 6 0.18
17 9 0.26
18 2 0.06
19 17 0.50
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.46
Consensus pattern (19 bp):
GTATATATCAATATTTCAT
Found at i:60851234 original size:46 final size:46
Alignment explanation
Indices: 60851184--60851539 Score: 466
Period size: 46 Copynumber: 7.7 Consensus size: 46
60851174 TGCCATACTG
* * *
60851184 TCTTTCAACTATGGTCTTACTCATATTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCAT-TTCATATCAGGTTGCCATGGTA
* * * * *
60851230 TCTTTCAACCATGGTCTTATTCATTTTATGTCACGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTA
* *** *
60851276 TCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTA
* * **
60851322 TCTTTCAACCATGGTCTTATTCGTTTCATATCACATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTA
* *
60851368 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCGTGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTA
*
60851414 TCTTTCAACCATGGTCTTA-TACATTTCATATTAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACT-CATTTCATATCAGGTTGCCATGGTA
*
60851460 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTA
*
60851506 TCTTTCAACCATGGTCTTACAT-ATTTCGTATCAG
1 TCTTTCAACCATGGTCTTAC-TCATTTCATATCAG
60851540 AGAGCACACT
Statistics
Matches: 277, Mismatches: 29, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
45 2 0.01
46 275 0.99
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACTCATTTCATATCAGGTTGCCATGGTA
Found at i:60857392 original size:15 final size:15
Alignment explanation
Indices: 60857372--60857401 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
60857362 GGTTTCACTC
*
60857372 CCCAAAAACCTAAAA
1 CCCAAAAACCCAAAA
60857387 CCCAAAAACCCAAAA
1 CCCAAAAACCCAAAA
60857402 ACATAAAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.37, G:0.00, T:0.03
Consensus pattern (15 bp):
CCCAAAAACCCAAAA
Found at i:60861648 original size:40 final size:40
Alignment explanation
Indices: 60861564--60861788 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
60861554 TTGAACAATG
* * * *
60861564 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
60861604 TCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60861644 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60861683 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
60861723 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
60861764 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
60861789 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 120 0.74
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:60861806 original size:80 final size:80
Alignment explanation
Indices: 60861564--60861821 Score: 233
Period size: 80 Copynumber: 3.2 Consensus size: 80
60861554 TTGAACAATG
* * * * * * * *
60861564 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGTAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
** *
60861627 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* *
60861644 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
60861708 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
60861723 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
60861787 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
60861803 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
60861822 TACGTGATTT
Statistics
Matches: 153, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 73 0.48
80 76 0.50
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:60861810 original size:119 final size:119
Alignment explanation
Indices: 60861564--60861821 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
60861554 TTGAACAATG
* * *
60861564 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGTATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
60861629 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
60861683 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
60861746 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
60861803 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
60861822 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 82 0.71
120 31 0.27
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:60870109 original size:23 final size:23
Alignment explanation
Indices: 60870082--60870128 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
60870072 CAAACATTTC
* *
60870082 AACTACTCAATTCTATAT-TCAAA
1 AACTAC-CAAATCAATATGTCAAA
60870105 AACTACCAAATCAATATGTCAAA
1 AACTACCAAATCAATATGTCAAA
60870128 A
1 A
60870129 TCATCAAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.49, C:0.21, G:0.02, T:0.28
Consensus pattern (23 bp):
AACTACCAAATCAATATGTCAAA
Found at i:60874563 original size:19 final size:19
Alignment explanation
Indices: 60874520--60874569 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
60874510 TATTGTACAC
60874520 TATA-AAAATTTT-AAAAT
1 TATATAAAATTTTAAAAAT
* *
60874537 TGTGTAAAATTTTAAAAAT
1 TATATAAAATTTTAAAAAT
*
60874556 TATATAAAAATTTA
1 TATATAAAATTTTA
60874570 TTATAAATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 2 0.08
18 8 0.31
19 16 0.62
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (19 bp):
TATATAAAATTTTAAAAAT
Found at i:60891223 original size:30 final size:32
Alignment explanation
Indices: 60891183--60891248 Score: 84
Period size: 30 Copynumber: 2.1 Consensus size: 32
60891173 AATAATTTAT
*
60891183 TTTTCTATAATTTTTAAAA-AATTAAATTA-AA
1 TTTTCTATAA-TTTTAAAAGAATTAAAATATAA
*
60891214 TTTT-TATAATTTTAAAAGGATTAAAATATAA
1 TTTTCTATAATTTTAAAAGAATTAAAATATAA
60891245 TTTT
1 TTTT
60891249 ATCTTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 8 0.26
30 13 0.42
31 10 0.32
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (32 bp):
TTTTCTATAATTTTAAAAGAATTAAAATATAA
Found at i:60898253 original size:29 final size:29
Alignment explanation
Indices: 60898214--60898292 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
60898204 CTTAATAATC
*
60898214 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
60898244 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
60898273 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
60898293 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:60901247 original size:30 final size:30
Alignment explanation
Indices: 60901213--60901269 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
60901203 TTTACGAGCC
* *
60901213 TAGGGGCAAAAGTATAATTTTGACAAAGTT
1 TAGGGACAAAAATATAATTTTGACAAAGTT
*
60901243 TAGGGACAAAAATATAATTTTGCCAAA
1 TAGGGACAAAAATATAATTTTGACAAA
60901270 ATATGATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.28
Consensus pattern (30 bp):
TAGGGACAAAAATATAATTTTGACAAAGTT
Found at i:60906073 original size:28 final size:29
Alignment explanation
Indices: 60906019--60906073 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
60906009 ACAGGGGTTT
*
60906019 TCACACGGCCAAGCACACGCTCATGTCCC
1 TCACACGGCCAAGCACACGCCCATGTCCC
* *
60906048 TCACACGGCCTAG-ACACGCCCGTGTC
1 TCACACGGCCAAGCACACGCCCATGTC
60906074 ATTGCCCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.22, C:0.44, G:0.20, T:0.15
Consensus pattern (29 bp):
TCACACGGCCAAGCACACGCCCATGTCCC
Found at i:60909768 original size:79 final size:82
Alignment explanation
Indices: 60909651--60909835 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
60909641 GCTACTCGTT
* * *
60909651 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
60909714 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
60909731 CAAATACCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
60909794 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
60909811 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60909836 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:60909835 original size:40 final size:40
Alignment explanation
Indices: 60909633--60909835 Score: 218
Period size: 40 Copynumber: 5.1 Consensus size: 40
60909623 GGAATTTAAT
** *
60909633 CGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
* * *
60909673 CGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
60909713 CGGATTTAGTAACTCGCACAAATACCTTCGGG-CTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
60909752 CGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCC
* * *
60909792 CGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCC
1 CGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCC
60909832 CGGA
1 CGGA
60909836 CATCATTCAA
Statistics
Matches: 136, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.24
40 90 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:60917690 original size:79 final size:82
Alignment explanation
Indices: 60917579--60917763 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
60917569 GCTACTCGTT
* * *
60917579 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
60917642 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
60917659 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
60917722 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
60917739 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
60917764 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:60917763 original size:40 final size:40
Alignment explanation
Indices: 60917560--60917763 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
60917550 CGGAATTTAA
** *
60917560 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
60917600 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
60917640 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
60917679 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
60917719 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
60917759 CCGGA
1 CCGGA
60917764 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:60920420 original size:31 final size:32
Alignment explanation
Indices: 60920368--60920430 Score: 76
Period size: 31 Copynumber: 2.0 Consensus size: 32
60920358 TTATCTATAA
* *
60920368 AAGATATTTATTAATTTAATAT-TTATATTAT
1 AAGATATTTATTAATTAAATATATTAAATTAT
*
60920399 AAGATTTTTATGTAA-TAAATATATTAAATTAT
1 AAGATATTTAT-TAATTAAATATATTAAATTAT
60920431 GACAAGTGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (32 bp):
AAGATATTTATTAATTAAATATATTAAATTAT
Found at i:60922010 original size:20 final size:21
Alignment explanation
Indices: 60921987--60922035 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
60921977 AATTATATTG
60921987 AATTGAAAAAAAATAT-AATT
1 AATTGAAAAAAAATATGAATT
**
60922007 AATT-AATTAAAATATGAATT
1 AATTGAAAAAAAATATGAATT
60922027 AATTGAAAA
1 AATTGAAAA
60922036 CTGAAAAGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 9 0.39
20 12 0.52
21 2 0.09
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (21 bp):
AATTGAAAAAAAATATGAATT
Found at i:60922264 original size:47 final size:47
Alignment explanation
Indices: 60922202--60922297 Score: 156
Period size: 47 Copynumber: 2.0 Consensus size: 47
60922192 CAGATATTGT
* *
60922202 TACTGTTACTGTTTCGAATTTGTTTCGATGAAGTACTCTGTGTACCG
1 TACTGTTACTATTTCGAATTTGTTCCGATGAAGTACTCTGTGTACCG
* *
60922249 TACTGTTACTATTTCGGATTTGTTCCGATGAGGTACTCTGTGTACCG
1 TACTGTTACTATTTCGAATTTGTTCCGATGAAGTACTCTGTGTACCG
60922296 TA
1 TA
60922298 TTGCTACTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.42
Consensus pattern (47 bp):
TACTGTTACTATTTCGAATTTGTTCCGATGAAGTACTCTGTGTACCG
Found at i:60922310 original size:53 final size:51
Alignment explanation
Indices: 60922196--60922311 Score: 141
Period size: 47 Copynumber: 2.3 Consensus size: 51
60922186 GTCTGTCAGA
* *
60922196 TATTGTTACTGTTACTGTTTCGAATTTGTTTCGATGAAGTACTCTGTGTACC
1 TATTG-TACTGTTACTATTTCGAATTTGTTCCGATGAAGTACTCTGTGTACC
* *
60922248 ----GTACTGTTACTATTTCGGATTTGTTCCGATGAGGTACTCTGTGTACC
1 TATTGTACTGTTACTATTTCGAATTTGTTCCGATGAAGTACTCTGTGTACC
60922295 GTATTGCTACTGTTACT
1 -TATTG-TACTGTTACT
60922312 GTTACTGTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
47 42 0.78
48 1 0.02
52 1 0.02
53 10 0.19
ACGTcount: A:0.18, C:0.17, G:0.21, T:0.44
Consensus pattern (51 bp):
TATTGTACTGTTACTATTTCGAATTTGTTCCGATGAAGTACTCTGTGTACC
Found at i:60922490 original size:18 final size:18
Alignment explanation
Indices: 60922457--60922521 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
60922447 AATTTAATTG
*
60922457 TTACTGAATAACTGATTA
1 TTACTAAATAACTGATTA
* * *
60922475 TTATTAAATAATTGATTG
1 TTACTAAATAACTGATTA
* *
60922493 TTACTAAATAACTGACTG
1 TTACTAAATAACTGATTA
*
60922511 TTACTGAATAA
1 TTACTAAATAA
60922522 ATAATCGTTC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (18 bp):
TTACTAAATAACTGATTA
Found at i:60922521 original size:36 final size:37
Alignment explanation
Indices: 60922433--60922521 Score: 117
Period size: 36 Copynumber: 2.4 Consensus size: 37
60922423 TGGAAAGATC
*
60922433 GACTGTTACTGAATAATTTAATTGTTACTGAATAACT
1 GACTGTTACTGAATAATTTAATTGTTACTAAATAACT
* * * * *
60922470 GATTATTATTAAATAA-TTGATTGTTACTAAATAACT
1 GACTGTTACTGAATAATTTAATTGTTACTAAATAACT
60922506 GACTGTTACTGAATAA
1 GACTGTTACTGAATAA
60922522 ATAATCGTTC
Statistics
Matches: 42, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
36 30 0.71
37 12 0.29
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.40
Consensus pattern (37 bp):
GACTGTTACTGAATAATTTAATTGTTACTAAATAACT
Found at i:60926436 original size:20 final size:18
Alignment explanation
Indices: 60926411--60926447 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
60926401 ATTGCTAAGT
60926411 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
60926431 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
60926448 TATGAGTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:60930714 original size:43 final size:43
Alignment explanation
Indices: 60930667--60930833 Score: 180
Period size: 43 Copynumber: 3.9 Consensus size: 43
60930657 GATTAACGAG
*
60930667 ATGTGATTATATGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATT
* *
60930710 ATGTGAATACGTGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATT
* * * *
60930753 ATTTGATTTCGTGTAAGACCATAG-CTGGG-CTATCGGCATCGA-T
1 ATGTGATTACATGTAAGACCAT-GTCTGGGAC-ATTGGCATC-ATT
* * * *
60930796 ACGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
60930834 TGTACGAGCT
Statistics
Matches: 104, Mismatches: 15, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
42 6 0.06
43 96 0.92
44 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCATT
Found at i:60934015 original size:26 final size:26
Alignment explanation
Indices: 60933977--60934058 Score: 112
Period size: 26 Copynumber: 3.0 Consensus size: 26
60933967 CCAATTTCTG
60933977 TAAAAGTGAGCCTTTGTGGCTATCTC
1 TAAAAGTGAGCCTTTGTGGCTATCTC
60934003 TAAAAG-GACGCCTTTGTGGCTATCTC
1 TAAAAGTGA-GCCTTTGTGGCTATCTC
*
60934029 AGTTAAAAGTGAGTCTTTGTGGCTATCTC
1 ---TAAAAGTGAGCCTTTGTGGCTATCTC
60934058 T
1 T
60934059 GTTAAAAAAG
Statistics
Matches: 50, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
25 2 0.04
26 24 0.48
29 22 0.44
30 2 0.04
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.35
Consensus pattern (26 bp):
TAAAAGTGAGCCTTTGTGGCTATCTC
Found at i:60934080 original size:29 final size:29
Alignment explanation
Indices: 60933977--60934065 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
60933967 CCAATTTCTG
60933977 TAAAAGTGAGCCTTTGTGGCTATCTC---
1 TAAAAGTGAGCCTTTGTGGCTATCTCAGT
60934003 TAAAAG-GACGCCTTTGTGGCTATCTCAGT
1 TAAAAGTGA-GCCTTTGTGGCTATCTCAGT
* *
60934032 TAAAAGTGAGTCTTTGTGGCTATCTCTGT
1 TAAAAGTGAGCCTTTGTGGCTATCTCAGT
60934061 TAAAA
1 TAAAA
60934066 AAGTACCTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
25 2 0.04
26 23 0.41
29 29 0.52
30 2 0.04
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (29 bp):
TAAAAGTGAGCCTTTGTGGCTATCTCAGT
Found at i:60938395 original size:93 final size:93
Alignment explanation
Indices: 60938236--60938426 Score: 301
Period size: 93 Copynumber: 2.1 Consensus size: 93
60938226 AAAAATTTCA
* * * * **
60938236 ATTTCGTCCCTATGCTCAGAAAATGAAATTCATGAAATTTAACCCTCTTTTCAAGCCTAGTCGAA
1 ATTTCGTCCCTAGGCTCAGAAAATGAAATTCATGAAATATAACCCTATTTCCAAGCCTAGAAGAA
*
60938301 ATTTATATACTACATTTACAGTACATAC
66 ATTTATATACTACATTTACAGCACATAC
* *
60938329 ATTTCGTCCCTAGGCTCTGAAAATGAAATTCATGAAATATAACCCTATTTCCATGCCTAGAAGAA
1 ATTTCGTCCCTAGGCTCAGAAAATGAAATTCATGAAATATAACCCTATTTCCAAGCCTAGAAGAA
60938394 ATTTATATACTACATTTACAGCACATAC
66 ATTTATATACTACATTTACAGCACATAC
60938422 ATTTC
1 ATTTC
60938427 ACAAATTTTA
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 89 1.00
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (93 bp):
ATTTCGTCCCTAGGCTCAGAAAATGAAATTCATGAAATATAACCCTATTTCCAAGCCTAGAAGAA
ATTTATATACTACATTTACAGCACATAC
Found at i:60939078 original size:5 final size:5
Alignment explanation
Indices: 60939068--60939104 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
60939058 GATGCCAACC
60939068 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
60939105 TTTATTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:60944102 original size:22 final size:22
Alignment explanation
Indices: 60944044--60944149 Score: 115
Period size: 22 Copynumber: 4.7 Consensus size: 22
60944034 ACTGAGCTGA
60944044 TAAACAGTAAGCTCTATTGAGC
1 TAAACAGTAAGCTCTATTGAGC
* *
60944066 TAAAAACGGTAAGCTCTATTTAGC
1 T--AAACAGTAAGCTCTATTGAGC
*
60944090 TGAACAGTAAGCTCT-TTCGAGC
1 TAAACAGTAAGCTCTATT-GAGC
* * *
60944112 TAAACGGTAAGCTCCAATGAGC
1 TAAACAGTAAGCTCTATTGAGC
60944134 TGAAACAGTAAGCTCT
1 T-AAACAGTAAGCTCT
60944150 TACAATCTGA
Statistics
Matches: 68, Mismatches: 11, Indels: 9
0.77 0.12 0.10
Matches are distributed among these distances:
21 2 0.03
22 33 0.49
23 13 0.19
24 20 0.29
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (22 bp):
TAAACAGTAAGCTCTATTGAGC
Found at i:60944135 original size:44 final size:45
Alignment explanation
Indices: 60944024--60944150 Score: 150
Period size: 44 Copynumber: 2.7 Consensus size: 45
60944014 GTCATGGTCA
*
60944024 GTAAGCTCCTACTGAGCTGATAAACAGTAAGCTCTATTGAGCTAAAAACG
1 GTAAGCTCC-AATGAGCTG--AAACAGTAAGCTCT-TTGAGCT-AAAACG
* * *
60944074 GTAAGCTCTATTTAGCTG-AACAGTAAGCTCTTTCGAGCT-AAACG
1 GTAAGCTCCAATGAGCTGAAACAGTAAGCTCTTT-GAGCTAAAACG
60944118 GTAAGCTCCAATGAGCTGAAACAGTAAGCTCTT
1 GTAAGCTCCAATGAGCTGAAACAGTAAGCTCTT
60944151 ACAATCTGAA
Statistics
Matches: 69, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
44 20 0.29
45 16 0.23
46 18 0.26
49 7 0.10
50 8 0.12
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (45 bp):
GTAAGCTCCAATGAGCTGAAACAGTAAGCTCTTTGAGCTAAAACG
Found at i:60965755 original size:33 final size:33
Alignment explanation
Indices: 60965718--60965793 Score: 138
Period size: 33 Copynumber: 2.4 Consensus size: 33
60965708 ATCATTCATT
60965718 CAAACTATCATACTTTCATATGGCATTCCACAC
1 CAAACTATCATACTTTCATATGGCATTCCACAC
60965751 CAAACTATCATACTTTCATATGGCATTCCACAC
1 CAAACTATCATACTTTCATATGGCATTCCACAC
60965784 C-AACT-TCATA
1 CAAACTATCATA
60965794 TTTATCTATC
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
31 5 0.12
32 4 0.09
33 34 0.79
ACGTcount: A:0.34, C:0.30, G:0.05, T:0.30
Consensus pattern (33 bp):
CAAACTATCATACTTTCATATGGCATTCCACAC
Found at i:60965977 original size:48 final size:48
Alignment explanation
Indices: 60965895--60965988 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
60965885 TTTCTTGGCT
* * *
60965895 TAAAAATGCCTAAGTCAGCCTAACTTCCAGCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
60965943 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
60965989 AGAATCCCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
47 4 0.10
48 37 0.90
ACGTcount: A:0.40, C:0.26, G:0.14, T:0.20
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:60968493 original size:48 final size:48
Alignment explanation
Indices: 60968411--60968504 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
60968401 TTTCTTGGCT
* *
60968411 TAAAAATGCCTAAGTCAGCCTAACTTCCAGCAATAATGGATTCAACCG
1 TAAAAATGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
60968459 TAAAAATGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAATGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
60968505 AGAATTCCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 4 0.10
48 38 0.90
ACGTcount: A:0.40, C:0.24, G:0.14, T:0.21
Consensus pattern (48 bp):
TAAAAATGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:60969722 original size:19 final size:19
Alignment explanation
Indices: 60969698--60969735 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
60969688 CAAATTCAAG
60969698 ATAGAAATAATTGTTTTAT
1 ATAGAAATAATTGTTTTAT
60969717 ATAGAAATAATTGTTTTAT
1 ATAGAAATAATTGTTTTAT
60969736 CATTTTTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (19 bp):
ATAGAAATAATTGTTTTAT
Found at i:60970602 original size:21 final size:22
Alignment explanation
Indices: 60970548--60970603 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
60970538 CAATTTGAAC
* *
60970548 AATGTGATGATTAAAAAAGTTA
1 AATGTGGTTATTAAAAAAGTTA
*
60970570 AATGTGGTTATTAAAAAATTTA
1 AATGTGGTTATTAAAAAAGTTA
*
60970592 AATTTGG-TATTA
1 AATGTGGTTATTA
60970604 TAGATCAAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 5 0.17
22 25 0.83
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (22 bp):
AATGTGGTTATTAAAAAAGTTA
Found at i:60971009 original size:42 final size:41
Alignment explanation
Indices: 60970947--60971105 Score: 129
Period size: 42 Copynumber: 3.7 Consensus size: 41
60970937 TAAGTGATTT
* *
60970947 CGTATAAGACCCTGTTTGGGACATGGCATCGATATGAGGTCC
1 CGTATAAGACCATGTCTGGGACATGGCATCGATATGA-GTCC
* * * *
60970989 CGTATAAGACCATGTCTGGGACATGGCGTCGGCACCGATTCGAGACTT
1 CGTATAAGACCATGTCTGGGACATGGCATC-G-A--TA-T-GAGTC-C
* * * *
60971037 CGTATAAGACCATATCTGGGATATGGCATCGATGTGTAGTTC
1 CGTATAAGACCATGTCTGGGACATGGCATCGATATG-AGTCC
* *
60971079 CATGTAAGACCATGTCTGGGACATGGC
1 CGTATAAGACCATGTCTGGGACATGGC
60971106 TTTGGTACCC
Statistics
Matches: 91, Mismatches: 18, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
42 51 0.56
43 4 0.04
44 1 0.01
46 2 0.02
47 4 0.04
48 29 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (41 bp):
CGTATAAGACCATGTCTGGGACATGGCATCGATATGAGTCC
Found at i:60975577 original size:38 final size:37
Alignment explanation
Indices: 60975532--60975651 Score: 132
Period size: 38 Copynumber: 3.1 Consensus size: 37
60975522 TTTAAACTTA
60975532 GATATAATACCAGCACTAGTCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACTAG-CCTGCGGGATTTAACCCG
* * *
60975570 GATATAATACCAGCACGAAGCCTACGGGATTTAACTCG
1 GATATAATACCAGCAC-TAGCCTGCGGGATTTAACCCG
* * * *
60975608 GATATAATTCTAGCATATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAATACCAGCA-CTAGCCTGCGGG-ATTTAA-CCCG
60975648 GATA
1 GATA
60975652 CACATCAAAT
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
38 54 0.79
39 7 0.10
40 7 0.10
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (37 bp):
GATATAATACCAGCACTAGCCTGCGGGATTTAACCCG
Found at i:60975648 original size:78 final size:78
Alignment explanation
Indices: 60975486--60975651 Score: 194
Period size: 78 Copynumber: 2.1 Consensus size: 78
60975476 CGAGGTATAA
* * * *
60975486 AACCCGAACATAACACCAGCACGAAGCCTACGAGACTTTAAACTTAGATATAATACCAGCACTAG
1 AACCCGGATATAACACCAGCACGAAGCCTACGAGACTTTAAACTCAGATATAATACCAGCAATAG
60975551 TCCTGCGGGATTT
66 TCCTGCGGGATTT
* * * * *
60975564 AACCCGGATATAATACCAGCACGAAGCCTACGGGA-TTT-AACTCGGATATAATTCTAGCATATA
1 AACCCGGATATAACACCAGCACGAAGCCTACGAGACTTTAAACTCAGATATAATACCAGCA-ATA
*
60975627 G-CCTGCGGGTCTTT
65 GTCCTGCGGG-ATTT
60975641 AAGCCCGGATA
1 AA-CCCGGATA
60975652 CACATCAAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
76 25 0.33
77 11 0.15
78 39 0.52
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (78 bp):
AACCCGGATATAACACCAGCACGAAGCCTACGAGACTTTAAACTCAGATATAATACCAGCAATAG
TCCTGCGGGATTT
Found at i:60978836 original size:33 final size:33
Alignment explanation
Indices: 60978792--60978874 Score: 130
Period size: 33 Copynumber: 2.5 Consensus size: 33
60978782 GTTTGCATTT
* * *
60978792 AATTATATCTTGCATTATATGTTTTCATCTTTA
1 AATTATGTCTTGCATTATATGTCTGCATCTTTA
*
60978825 AATTATGTCTTGTATTATATGTCTGCATCTTTA
1 AATTATGTCTTGCATTATATGTCTGCATCTTTA
60978858 AATTATGTCTTGCATTA
1 AATTATGTCTTGCATTA
60978875 AGAGTTTGCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.52
Consensus pattern (33 bp):
AATTATGTCTTGCATTATATGTCTGCATCTTTA
Found at i:60978885 original size:33 final size:33
Alignment explanation
Indices: 60978778--60978906 Score: 128
Period size: 33 Copynumber: 4.1 Consensus size: 33
60978768 TTTCAGTTCA
*
60978778 ATAAGTTTGCA--TTT-AATTATATCTTGCATT
1 ATAAGTTTGCATCTTTAAATTATGTCTTGCATT
* * *
60978808 ATATGTTTTCATCTTTAAATTATGTCTTGTATT
1 ATAAGTTTGCATCTTTAAATTATGTCTTGCATT
* *
60978841 ATATGTCTGCATCTTTAAATTATGTCTTGCATT
1 ATAAGTTTGCATCTTTAAATTATGTCTTGCATT
* *
60978874 A-AGAGTTTGCA--TTT-AATTAAGTCATGCATT
1 ATA-AGTTTGCATCTTTAAATTATGTCTTGCATT
60978904 ATA
1 ATA
60978907 TTTATGTGTT
Statistics
Matches: 83, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
30 24 0.29
31 4 0.05
32 4 0.05
33 51 0.61
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.49
Consensus pattern (33 bp):
ATAAGTTTGCATCTTTAAATTATGTCTTGCATT
Found at i:60985056 original size:14 final size:14
Alignment explanation
Indices: 60985020--60985058 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
60985010 TTGTTTCACT
*
60985020 GAAAATGACTTCCG
1 GAAAATGATTTCCG
* *
60985034 AAAAATGATTTCTG
1 GAAAATGATTTCCG
60985048 GAAAATGATTT
1 GAAAATGATTT
60985059 ACTTTTCTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCCG
Found at i:60985635 original size:16 final size:16
Alignment explanation
Indices: 60985604--60985640 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
60985594 ATGTGAATAA
60985604 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
60985620 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
60985636 TATTA
1 TATTA
60985641 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:60985664 original size:18 final size:18
Alignment explanation
Indices: 60985626--60985661 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
60985616 TTATTATTTT
*
60985626 TAAAATTTATTATTAAAA
1 TAAAATTTAATATTAAAA
60985644 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
60985662 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:60985672 original size:19 final size:19
Alignment explanation
Indices: 60985650--60985708 Score: 70
Period size: 19 Copynumber: 3.2 Consensus size: 19
60985640 AAAATAAAAT
60985650 TTAAATATTAAATAATTTA
1 TTAAATATTAAATAATTTA
*
60985669 TTAAATAATAAATTATATTTA
1 TTAAATATTAAA-TA-ATTTA
60985690 TT--ATATT-AATAATTTA
1 TTAAATATTAAATAATTTA
60985706 TTA
1 TTA
60985709 TGTGACTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
16 7 0.20
17 2 0.06
18 2 0.06
19 15 0.43
20 2 0.06
21 7 0.20
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TTAAATATTAAATAATTTA
Found at i:60987380 original size:17 final size:17
Alignment explanation
Indices: 60987358--60987396 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
60987348 GAATGATGAA
*
60987358 AGGAGATGCAAGAACCG
1 AGGAGAAGCAAGAACCG
60987375 AGGAGAAGCAAGAACCG
1 AGGAGAAGCAAGAACCG
60987392 AGGAG
1 AGGAG
60987397 CTTTAGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.44, C:0.15, G:0.38, T:0.03
Consensus pattern (17 bp):
AGGAGAAGCAAGAACCG
Found at i:60995209 original size:26 final size:26
Alignment explanation
Indices: 60995173--60995224 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
60995163 CACCATTGAA
* *
60995173 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
60995199 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
60995225 CTTTTCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:60995301 original size:70 final size:71
Alignment explanation
Indices: 60995185--60995335 Score: 241
Period size: 72 Copynumber: 2.1 Consensus size: 71
60995175 GGGGAATCAT
*
60995185 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTT-CATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
60995249 ATATCG
66 ATATCG
* ***
60995255 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATG
60995320 GATATCG
65 GATATCG
60995327 CACTTAGCA
1 CACTTAGCA
60995336 CCACCAATGA
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 16 0.22
71 28 0.38
72 30 0.41
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTTACATTTCAAAGATACAATGG
ATATCG
Found at i:60995378 original size:26 final size:26
Alignment explanation
Indices: 60995348--60995398 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
60995338 ACCAATGAAC
*
60995348 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
60995374 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
60995399 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:60995438 original size:103 final size:104
Alignment explanation
Indices: 60995254--60995476 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
60995244 AATGGATATC
60995254 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
60995319 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
60995358 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
60995422 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
60995461 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
60995477 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 94 0.84
104 18 0.16
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:60995838 original size:29 final size:29
Alignment explanation
Indices: 60995805--60995868 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
60995795 TAATCCACCA
60995805 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
60995834 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
60995864 CCCAA
1 CCCAA
60995869 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:60995842 original size:30 final size:30
Alignment explanation
Indices: 60995812--60995868 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
60995802 CCACCCAACT
60995812 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
60995841 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
60995869 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:61003767 original size:30 final size:28
Alignment explanation
Indices: 61003731--61003800 Score: 90
Period size: 30 Copynumber: 2.5 Consensus size: 28
61003721 ATATTTTGGA
61003731 AAAATTACATTTTTGCCCCTAAGCTTTAT
1 AAAATTACATTTTTGCCCCTAAGC-TTAT
* *
61003760 CAAAATTACACTTTTGCCCCTATGCTTAT
1 -AAAATTACATTTTTGCCCCTAAGCTTAT
61003789 AAAA-TA-ATTTTT
1 AAAATTACATTTTT
61003801 ATTCAATTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 5 0.14
27 2 0.05
28 4 0.11
29 4 0.11
30 22 0.59
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (28 bp):
AAAATTACATTTTTGCCCCTAAGCTTAT
Found at i:61004669 original size:5 final size:5
Alignment explanation
Indices: 61004659--61004688 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
61004649 TTTACCTTGA
*
61004659 TATTC TATTC TATTC TATTC TATTA TATTC
1 TATTC TATTC TATTC TATTC TATTC TATTC
61004689 ACTAAAGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTC
Found at i:61006131 original size:17 final size:19
Alignment explanation
Indices: 61006109--61006145 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
61006099 TTTTAGGGAC
61006109 TAAATTGAAG-GC-AAAAG
1 TAAATTGAAGAGCGAAAAG
*
61006126 TAAATTTAAGAGCGAAAAG
1 TAAATTGAAGAGCGAAAAG
61006145 T
1 T
61006146 GTGAAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.53
18 2 0.12
19 6 0.35
ACGTcount: A:0.51, C:0.05, G:0.22, T:0.22
Consensus pattern (19 bp):
TAAATTGAAGAGCGAAAAG
Found at i:61006242 original size:29 final size:29
Alignment explanation
Indices: 61006201--61006263 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
61006191 TGTGGTGCCG
61006201 AAAATACAAATATGGAAGACCTAAGGACA
1 AAAATACAAATATGGAAGACCTAAGGACA
61006230 AAAATACAAATATGGAAGACCTAAGGACA
1 AAAATACAAATATGGAAGACCTAAGGACA
61006259 AAAAT
1 AAAAT
61006264 TTATAGCACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.57, C:0.13, G:0.16, T:0.14
Consensus pattern (29 bp):
AAAATACAAATATGGAAGACCTAAGGACA
Found at i:61007140 original size:17 final size:18
Alignment explanation
Indices: 61007108--61007142 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
61007098 TATTCTTCAT
*
61007108 TTTAATTTTCGTAATTTA
1 TTTAATTTTCGCAATTTA
61007126 TTTAA-TTTCGCAATTTA
1 TTTAATTTTCGCAATTTA
61007143 GATTCAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.57
Consensus pattern (18 bp):
TTTAATTTTCGCAATTTA
Found at i:61022263 original size:46 final size:44
Alignment explanation
Indices: 61022177--61022337 Score: 171
Period size: 46 Copynumber: 3.5 Consensus size: 44
61022167 GCATATCTAT
*
61022177 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACACGTCTCGTA
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTGACACGTCTCGAA
* *
61022223 GTCGATGCATGTCCCATACATGTCTTACACTGGCTTACGTCTCGAA
1 GTCGATGCATGTCCCAGACATGTCTTACACTGAC--ACGTCTCGAA
* ** *
61022269 GCCGATGCATGTCTTAGACATGTCTTACACTAGCACTCGTCTC-AA
1 GTCGATGCATGTCCCAGACATGTCTTACACT-G-ACACGTCTCGAA
*
61022314 TGCCGATGCCATGTCCCAGACATG
1 -GTCGATG-CATGTCCCAGACATG
61022338 GTTTTACATT
Statistics
Matches: 98, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
44 12 0.12
45 15 0.15
46 56 0.57
47 14 0.14
48 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (44 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTGACACGTCTCGAA
Done.