Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 190 of 325
Found at i:61685314 original size:7 final size:7
Alignment explanation
Indices: 61685302--61685331 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
61685292 TAATTCACAC
61685302 GGGCTCG
1 GGGCTCG
61685309 GGGCTCG
1 GGGCTCG
61685316 GGGCTCG
1 GGGCTCG
*
61685323 GGGCACG
1 GGGCTCG
61685330 GG
1 GG
61685332 CGTGTTCCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.03, C:0.27, G:0.60, T:0.10
Consensus pattern (7 bp):
GGGCTCG
Found at i:61689550 original size:19 final size:19
Alignment explanation
Indices: 61689526--61689566 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
61689516 ATCTCATTTC
61689526 ATTCA-TTGCATTTAGATTA
1 ATTCATTTGCATTTA-ATTA
61689545 ATTCATTTGCATTTAATTA
1 ATTCATTTGCATTTAATTA
61689564 ATT
1 ATT
61689567 TACTTTAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.51
Consensus pattern (19 bp):
ATTCATTTGCATTTAATTA
Found at i:61691723 original size:45 final size:45
Alignment explanation
Indices: 61691672--61691762 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
61691662 CCAAAACATG
** *
61691672 TGTCACATACATCATGAACTCTGACCACAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACTCAAACCACAACTCAATGACTTCAGA
*
61691717 TGTCACATATATCATGAACTCAAACCACAACTCAATGACTTCAGA
1 TGTCACATACATCATGAACTCAAACCACAACTCAATGACTTCAGA
61691762 T
1 T
61691763 CACATAGTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.25
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAAACCACAACTCAATGACTTCAGA
Found at i:61695835 original size:7 final size:7
Alignment explanation
Indices: 61695823--61695848 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
61695813 GAGTTAGTAT
61695823 TTTATTA
1 TTTATTA
61695830 TTTATTA
1 TTTATTA
61695837 TTTATTA
1 TTTATTA
61695844 TTTAT
1 TTTAT
61695849 AGAGTTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATTA
Found at i:61711318 original size:45 final size:45
Alignment explanation
Indices: 61711216--61711386 Score: 224
Period size: 45 Copynumber: 3.9 Consensus size: 45
61711206 CGAATTCATC
* *
61711216 CACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCCG-ATA-TCATTT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATTT
* * *
61711258 CACCAGCATTATAGCCTGCCAGGCTCGAAGGCCCGAATAGTATTT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTT
* *
61711303 CACCGGCATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCT
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTT
* *
61711348 CACCGGCATCATAGCCTGCTAGGCTCAAAGGCCTGAATA
1 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
61711387 TTACTGTACG
Statistics
Matches: 114, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
42 9 0.08
43 16 0.14
44 5 0.04
45 83 0.73
46 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (45 bp):
CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTT
Found at i:61719551 original size:17 final size:18
Alignment explanation
Indices: 61719529--61719567 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
61719519 TGAATAAATT
*
61719529 ATTAAAAAAATCAA-AAA
1 ATTAAAAAAATAAATAAA
61719546 ATT-AAAAAATAAATAAA
1 ATTAAAAAAATAAATAAA
61719563 ATTAA
1 ATTAA
61719568 TTTTGTCCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 9 0.47
17 9 0.47
18 1 0.05
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (18 bp):
ATTAAAAAAATAAATAAA
Found at i:61720542 original size:4 final size:4
Alignment explanation
Indices: 61720522--61720595 Score: 66
Period size: 4 Copynumber: 19.5 Consensus size: 4
61720512 TACTTCTATG
* *
61720522 CTCT CTCC CTC- CT-T CTCT CTCT CTCT CTCC CTC- CT-T CTCT CTCT
1 CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT CTCT
* * * *
61720566 CTCT CTCC CTCC CTCT TTCT TTCT CTCT CT
1 CTCT CTCT CTCT CTCT CTCT CTCT CTCT CT
61720596 TATCTCTTTC
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
3 8 0.13
4 52 0.87
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (4 bp):
CTCT
Found at i:61720547 original size:22 final size:22
Alignment explanation
Indices: 61720522--61720594 Score: 119
Period size: 22 Copynumber: 3.3 Consensus size: 22
61720512 TACTTCTATG
61720522 CTCTCTCCCTCCTTCTCTCTCT
1 CTCTCTCCCTCCTTCTCTCTCT
61720544 CTCTCTCCCTCCTTCTCTCTCT
1 CTCTCTCCCTCCTTCTCTCTCT
* * *
61720566 CTCTCTCCCTCCCTCTTTCTTT
1 CTCTCTCCCTCCTTCTCTCTCT
61720588 CTCTCTC
1 CTCTCTC
61720595 TTATCTCTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (22 bp):
CTCTCTCCCTCCTTCTCTCTCT
Found at i:61720564 original size:26 final size:26
Alignment explanation
Indices: 61720535--61720595 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
61720525 TCTCCCTCCT
*
61720535 TCTCTCTCTCTCTCTCCCTCCTTCTC
1 TCTCTCTCTCTCCCTCCCTCCTTCTC
* *
61720561 TCTCTCTCTCTCCCTCCCTCTTTCTT
1 TCTCTCTCTCTCCCTCCCTCCTTCTC
61720587 TCTCTCTCT
1 TCTCTCTCT
61720596 TATCTCTTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (26 bp):
TCTCTCTCTCTCCCTCCCTCCTTCTC
Found at i:61720581 original size:18 final size:18
Alignment explanation
Indices: 61720522--61720581 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
61720512 TACTTCTATG
* * *
61720522 CTCTCTCCCTCCTTCTCT
1 CTCTCTCTCTCCCTCCCT
*
61720540 CTCTCTCTCTCCCTCCTT
1 CTCTCTCTCTCCCTCCCT
*
61720558 CTCTCTCTCTCTCTCCCT
1 CTCTCTCTCTCCCTCCCT
*
61720576 CCCTCT
1 CTCTCT
61720582 TTCTTTCTCT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (18 bp):
CTCTCTCTCTCCCTCCCT
Found at i:61727581 original size:16 final size:16
Alignment explanation
Indices: 61727564--61727623 Score: 84
Period size: 16 Copynumber: 3.8 Consensus size: 16
61727554 TGAATAGGAT
* *
61727564 TAGAGGTGTATTGGAT
1 TAGAGGTGTAATGGAA
*
61727580 TAGAGGTGTAATAGAA
1 TAGAGGTGTAATGGAA
*
61727596 TAGAGATGTAATGGAA
1 TAGAGGTGTAATGGAA
61727612 TAGAGGTGTAAT
1 TAGAGGTGTAAT
61727624 AGCAAATCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.37, C:0.00, G:0.33, T:0.30
Consensus pattern (16 bp):
TAGAGGTGTAATGGAA
Found at i:61727600 original size:32 final size:32
Alignment explanation
Indices: 61727564--61727625 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
61727554 TGAATAGGAT
* * *
61727564 TAGAGGTGTATTGGATTAGAGGTGTAATAGAA
1 TAGAGATGTAATGGAATAGAGGTGTAATAGAA
61727596 TAGAGATGTAATGGAATAGAGGTGTAATAG
1 TAGAGATGTAATGGAATAGAGGTGTAATAG
61727626 CAAATCAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.37, C:0.00, G:0.34, T:0.29
Consensus pattern (32 bp):
TAGAGATGTAATGGAATAGAGGTGTAATAGAA
Found at i:61727707 original size:39 final size:43
Alignment explanation
Indices: 61727601--61727711 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 43
61727591 TAGAATAGAG
61727601 ATGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 ATGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
* * *
61727644 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTA-TGTTTGG-T
1 --ATGTAATGGAATAGAGGTGTAATAGCAAATC-AACTGTTTGGTT
61727687 -TG-AATGGAATAGAGGTGTAATAGCA
1 ATGTAATGGAATAGAGGTGTAATAGCA
61727712 TAATGGAAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
39 20 0.34
40 2 0.03
43 1 0.02
44 11 0.19
45 25 0.42
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (43 bp):
ATGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
Found at i:61727995 original size:16 final size:16
Alignment explanation
Indices: 61727951--61727997 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
61727941 TACTATAAAA
*
61727951 TATAATTTAACATA-AT
1 TATAA-TTAAAATATAT
*
61727967 TATTATT-AAATATAT
1 TATAATTAAAATATAT
61727982 TATAATTAAAATATAT
1 TATAATTAAAATATAT
61727998 AATTTAGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 4 0.15
15 10 0.38
16 12 0.46
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TATAATTAAAATATAT
Found at i:61728069 original size:120 final size:121
Alignment explanation
Indices: 61727835--61728371 Score: 850
Period size: 120 Copynumber: 4.5 Consensus size: 121
61727825 ATTTAATTAT
* * *
61727835 ATTTAAACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
*
61727900 ATCAATA-TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
66 ATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
* * *
61727955 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAGTAAAATTCTTAAAA
1 ATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
* * *
61728019 ATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATA
66 ATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
61728075 ATTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
* *
61728139 ATCAAAATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATA
66 ATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
* * * *
61728195 ATTTGAA-TTAATTAATATTAAAAATATTTTAATTAAAATATATAATTTAGTAAAATTCTTAATA
1 ATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
*
61728259 ATCAACATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
66 ATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
* * * *
61728315 ATTTGAA-GTAATTAATATTAAAAATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
61728372 TAAAATAATT
Statistics
Matches: 393, Mismatches: 22, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
119 63 0.16
120 328 0.83
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (121 bp):
ATTTGAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATA
ATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATA
Found at i:61728117 original size:18 final size:17
Alignment explanation
Indices: 61728096--61728130 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
61728086 TTATTATTAA
*
61728096 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
61728114 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
61728131 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:61728147 original size:16 final size:15
Alignment explanation
Indices: 61728122--61728151 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
61728112 ATATATAATT
61728122 TAATAAAATTCTTAA
1 TAATAAAATTCTTAA
61728137 TAATCAAAATTCTTA
1 TAAT-AAAATTCTTA
61728152 TATGAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (15 bp):
TAATAAAATTCTTAA
Found at i:61728360 original size:59 final size:58
Alignment explanation
Indices: 61728052--61728357 Score: 158
Period size: 59 Copynumber: 5.1 Consensus size: 58
61728042 CTCAAATCAT
* * * * *
61728052 AATATATGATACTATAAAAGATAATTTAACATAATTATTATTAAATATATTTTAATTAA
1 AATATATAATACTATAAAATATAATTTGA-ATAATTAATATTAAAAATATTTTAATTAA
* * * * ** * ** * ** * *
61728111 AATATATAAT-TTAATAAAATTCTTAATAATCAA-AATTCTTATATGAATTTACTAAAATCAT
1 AATATATAATACT-ATAAAA-T-ATAAT-TTGAATAATTAATAT-TAAAAATATTTTAATTAA
61728172 AATATATAATACTATAAAATATAATTTGAATTAATTAATATTAAAAATATTTTAATTAA
1 AATATATAATACTATAAAATATAATTTGAA-TAATTAATATTAAAAATATTTTAATTAA
* * * * ** * *
61728231 AATATATAAT-TTAGTAAAAT-T--CTT-AATAATCAACATTCTTATATGAATTTACTAAAATCA
1 AATATATAATACTA-TAAAATATAATTTGAATAATTAATATT-AAAAAT--ATTT--T--AATTA
*
61728291 T
58 A
*
61728292 AATATATGATACTATAAAATATAATTTGAAGTAATTAATATTAAAAATATTTTAATTAA
1 AATATATAATACTATAAAATATAATTTGAA-TAATTAATATTAAAAATATTTTAATTAA
61728351 AATATAT
1 AATATAT
61728358 GATTTAATAA
Statistics
Matches: 178, Mismatches: 47, Indels: 44
0.66 0.17 0.16
Matches are distributed among these distances:
54 9 0.05
55 5 0.03
56 2 0.01
57 4 0.02
58 7 0.04
59 57 0.32
60 16 0.09
61 52 0.29
62 6 0.03
63 4 0.02
64 2 0.01
65 5 0.03
66 9 0.05
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.42
Consensus pattern (58 bp):
AATATATAATACTATAAAATATAATTTGAATAATTAATATTAAAAATATTTTAATTAA
Found at i:61728422 original size:47 final size:46
Alignment explanation
Indices: 61728353--61728520 Score: 143
Period size: 47 Copynumber: 3.7 Consensus size: 46
61728343 TTAATTAAAA
*
61728353 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAAATTTTCT
1 TATATGAATTT-ATATAATTTAAAATAATTATAA-TAATAAATTTTCT
* * *
61728400 TATATGAATTTGTATAATTTAAAATAATTAT--TATTAAATATAAT-T
1 TATATGAATTTATATAATTTAAAATAATTATAATAATAAAT-T-TTCT
* * * *
61728445 TA-AT-AATAATATATAATTTCATAA-AATTCGTGATAATAAATTTTCT
1 TATATGAAT-TTATATAATTT-AAAATAATT-ATAATAATAAATTTTCT
*
61728491 TATATGAATTTATACAATTTAAAATAATTA
1 TATATGAATTTATATAATTTAAAATAATTA
61728521 ATATTAAATA
Statistics
Matches: 95, Mismatches: 14, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
43 3 0.03
44 22 0.23
45 9 0.09
46 8 0.08
47 46 0.48
48 7 0.07
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.45
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAATAATTATAATAATAAATTTTCT
Found at i:61728429 original size:101 final size:92
Alignment explanation
Indices: 61728368--61728544 Score: 254
Period size: 91 Copynumber: 1.9 Consensus size: 92
61728358 GATTTAATAA
* *
61728368 AATTT-AAAATAATT-ATAACTAATAAATTTTCTTATATGAATTTGTATAATTTAAAATAATTAT
1 AATTTCAAAA-AATTCATAA-TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAA
61728431 TATTAAATATAATTTAA-TAATAATATAT
64 TATTAAATATAATTTAATTAATAATATAT
* * * *
61728459 AATTTCATAAAATTCGTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATA
1 AATTTCAAAAAATTCATAATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATA
61728524 TTAAATATAATTTAA-TAATAA
66 TTAAATATAATTTAATTAATAA
61728545 AATGTTCTTA
Statistics
Matches: 78, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
91 73 0.94
92 5 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (92 bp):
AATTTCAAAAAATTCATAATAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATA
TTAAATATAATTTAATTAATAATATAT
Found at i:61728540 original size:17 final size:15
Alignment explanation
Indices: 61728509--61728547 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
61728499 TTTATACAAT
61728509 TTAAAATAATTAATA
1 TTAAAATAATTAATA
61728524 TTAAATATAATTTAATA
1 TTAAA-ATAA-TTAATA
*
61728541 ATAAAAT
1 TTAAAAT
61728548 GTTCTTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 5 0.24
16 6 0.29
17 10 0.48
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAAAATAATTAATA
Found at i:61732216 original size:3 final size:3
Alignment explanation
Indices: 61732203--61732257 Score: 103
Period size: 3 Copynumber: 18.7 Consensus size: 3
61732193 CACATGTCAA
61732203 TTC TT- TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
61732250 TTC TTC TT
1 TTC TTC TT
61732258 TTTTGGTGAG
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 49 0.96
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:61738353 original size:53 final size:53
Alignment explanation
Indices: 61738197--61738362 Score: 221
Period size: 53 Copynumber: 3.1 Consensus size: 53
61738187 GACGAAAAAT
* **
61738197 ATGTGATAAGTGTG-C-CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCA
1 ATGTGATAA-TGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
61738249 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
1 ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
* * *
61738302 ATGTGATAATGTGATTCCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGA
1 ATGTGATAATGTGACTCCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A
61738356 TATGTGA
1 -ATGTGA
61738363 ACCGTGTAAG
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
51 4 0.04
52 11 0.11
53 81 0.79
54 1 0.01
55 6 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (53 bp):
ATGTGATAATGTGACTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTATA
Found at i:61742249 original size:43 final size:44
Alignment explanation
Indices: 61742146--61742249 Score: 113
Period size: 42 Copynumber: 2.4 Consensus size: 44
61742136 TCTGGGACGT
* * * ** *
61742146 TGGCATCGATTTTTGATTTACGTGTAAAACCATGTTTGGGACAT
1 TGGCATCGATATTTGATTTACGCGTAAAACCATGTCTACGACAG
* * *
61742190 TGGCATTG-TATATGATTT-CGCGTAAAACCCTGTCTACGACAG
1 TGGCATCGATATTTGATTTACGCGTAAAACCATGTCTACGACAG
61742232 TGGCATCGATATTTGATT
1 TGGCATCGATATTTGATT
61742250 ACATGTAAGA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
42 25 0.52
43 16 0.33
44 7 0.15
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.37
Consensus pattern (44 bp):
TGGCATCGATATTTGATTTACGCGTAAAACCATGTCTACGACAG
Found at i:61742280 original size:43 final size:43
Alignment explanation
Indices: 61742122--61742280 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
61742112 TATGTGTCGT
* * * *
61742122 CGTGTAAGACCATGTCTGGGACGTTGGCATCGATTTTTGATTTA
1 CGTGTAAAACCACGTCTGGGACATTGGCATCGATATTTGA-TTA
* * * * *
61742166 CGTGTAAAACCATGTTTGGGACATTGGCATTG-TATATGATTT
1 CGTGTAAAACCACGTCTGGGACATTGGCATCGATATTTGATTA
* ** *
61742208 CGCGTAAAACC-CTGTCTACGACAGTGGCATCGATATTTGATTA
1 CGTGTAAAACCAC-GTCTGGGACATTGGCATCGATATTTGATTA
* *
61742251 CATGTAAGACCACGTCTGGGACATTGGCAT
1 CGTGTAAAACCACGTCTGGGACATTGGCAT
61742281 TGTACAAGCT
Statistics
Matches: 90, Mismatches: 22, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
42 26 0.29
43 35 0.39
44 29 0.32
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
CGTGTAAAACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:61742898 original size:26 final size:26
Alignment explanation
Indices: 61742868--61742921 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
61742858 ACGTTCATTG
61742868 ATAAATAAGATAAGTGAAGTCATTTA
1 ATAAATAAGATAAGTGAAGTCATTTA
61742894 ATAAATAAGATAAGTGAAGTCATTTA
1 ATAAATAAGATAAGTGAAGTCATTTA
61742920 AT
1 AT
61742922 GTGATTATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.50, C:0.04, G:0.15, T:0.31
Consensus pattern (26 bp):
ATAAATAAGATAAGTGAAGTCATTTA
Found at i:61744802 original size:21 final size:21
Alignment explanation
Indices: 61744747--61744808 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
61744737 ATAAGTGCTA
*
61744747 AACAGAAACCCGTAAAGGTTG
1 AACAGAAACCCATAAAGGTTG
* * * *
61744768 AACGGAAGCTCAT-AGGAGTTG
1 AACAGAAACCCATAAAG-GTTG
61744789 AACAGAAACCCATAAAGGTT
1 AACAGAAACCCATAAAGGTT
61744809 AAACTGAAGC
Statistics
Matches: 30, Mismatches: 9, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
20 2 0.07
21 26 0.87
22 2 0.07
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.16
Consensus pattern (21 bp):
AACAGAAACCCATAAAGGTTG
Found at i:61763346 original size:47 final size:47
Alignment explanation
Indices: 61763267--61763886 Score: 830
Period size: 47 Copynumber: 12.7 Consensus size: 47
61763257 CCCTTCGGGA
* * * * * *
61763267 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
61763314 CCTGTCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61763361 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61763408 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61763455 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61763502 CTTATCACATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61763547 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61763596 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
61763643 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** **
61763692 CTTATCACATATATACACTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTT-TCAC--AT-T-CA---TCACA-TCGGC-CAT---TA----GGC
61763756 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
61763805 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
61763852 CTTATCACATATATGCACATTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
61763887 AAAATCCTAA
Statistics
Matches: 519, Mismatches: 29, Indels: 50
0.87 0.05 0.08
Matches are distributed among these distances:
45 38 0.07
47 323 0.62
48 4 0.01
49 95 0.18
50 2 0.00
51 1 0.00
52 2 0.00
55 5 0.01
56 6 0.01
57 6 0.01
58 5 0.01
61 2 0.00
62 1 0.00
63 2 0.00
64 11 0.02
65 4 0.01
66 12 0.02
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:61763714 original size:17 final size:17
Alignment explanation
Indices: 61763692--61763734 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
61763682 GCCATTAGGC
61763692 CTTATCACATATATACA
1 CTTATCACATATATACA
61763709 CTTATCACATATATACA
1 CTTATCACATATATACA
61763726 CTT-TCACAT
1 CTTATCACAT
61763735 TCATCACATC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 6 0.23
17 20 0.77
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (17 bp):
CTTATCACATATATACA
Found at i:61763724 original size:113 final size:113
Alignment explanation
Indices: 61763596--61763830 Score: 463
Period size: 113 Copynumber: 2.1 Consensus size: 113
61763586 GCCATTCGGC
61763596 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
61763661 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
61763709 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
61763774 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
61763822 CTT-TCACAT
1 CTTATCACAT
61763831 TCATCACATC
Statistics
Matches: 122, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
112 6 0.05
113 116 0.95
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (113 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
Found at i:61763731 original size:64 final size:65
Alignment explanation
Indices: 61763643--61763783 Score: 241
Period size: 64 Copynumber: 2.2 Consensus size: 65
61763633 GCCATTAGGC
61763643 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
61763707 CA
64 CA
61763709 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
61763774 A
65 A
61763775 CTT-TCACAT
1 CTTATCACAT
61763784 TCATCACATC
Statistics
Matches: 73, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
64 47 0.64
65 6 0.08
66 20 0.27
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (65 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
Found at i:61767658 original size:40 final size:40
Alignment explanation
Indices: 61767626--61767928 Score: 419
Period size: 40 Copynumber: 7.6 Consensus size: 40
61767616 CCAGCATGAT
* * * * *
61767626 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
61767666 TGCTCTTCAGGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTC-GGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
61767706 TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
61767746 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
61767786 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
61767826 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
61767866 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
61767906 TGCTCTTCGAGATTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
61767929 CATTTCACTC
Statistics
Matches: 234, Mismatches: 27, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.00
40 230 0.98
41 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:61771209 original size:19 final size:19
Alignment explanation
Indices: 61771185--61771225 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
61771175 TGTTCATTTC
61771185 ATTCA-TTGCATTTAGATTA
1 ATTCATTTGCATTTA-ATTA
61771204 ATTCATTTGCATTTAATTA
1 ATTCATTTGCATTTAATTA
61771223 ATT
1 ATT
61771226 TAATTTAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.51
Consensus pattern (19 bp):
ATTCATTTGCATTTAATTA
Found at i:61771231 original size:20 final size:20
Alignment explanation
Indices: 61771190--61771231 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
61771180 ATTTCATTCA
*
61771190 TTGCATTTAGATTAATTCAT
1 TTGCATTTAGATTAATTAAT
61771210 TTGCATTTA-ATTAATTTAAT
1 TTGCATTTAGATTAA-TTAAT
61771230 TT
1 TT
61771232 AACACCTACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (20 bp):
TTGCATTTAGATTAATTAAT
Found at i:61772705 original size:21 final size:21
Alignment explanation
Indices: 61772679--61772722 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
61772669 GAAGAATGAC
61772679 GCCTTAATCCAAATCCAAGTA
1 GCCTTAATCCAAATCCAAGTA
61772700 GCCTTAATCCAAATCCAAGTA
1 GCCTTAATCCAAATCCAAGTA
61772721 GC
1 GC
61772723 AACACTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.36, C:0.30, G:0.11, T:0.23
Consensus pattern (21 bp):
GCCTTAATCCAAATCCAAGTA
Found at i:61778812 original size:21 final size:21
Alignment explanation
Indices: 61778769--61778840 Score: 60
Period size: 21 Copynumber: 3.5 Consensus size: 21
61778759 TCAAAAGAGC
* *
61778769 TAAACGGAAACCCAT-TAAGGT
1 TAAACGGAAACTCATATGA-GT
61778790 TAAACGGAAACTCATATGAGT
1 TAAACGGAAACTCATATGAGT
* * *
61778811 T-AACTGAAGCTCATAAGA-T
1 TAAACGGAAACTCATATGAGT
61778830 CTAAACGGAAA
1 -TAAACGGAAA
61778841 GTAAACACAA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
19 1 0.02
20 15 0.37
21 23 0.56
22 2 0.05
ACGTcount: A:0.44, C:0.17, G:0.18, T:0.21
Consensus pattern (21 bp):
TAAACGGAAACTCATATGAGT
Found at i:61789138 original size:10 final size:9
Alignment explanation
Indices: 61789112--61789573 Score: 329
Period size: 10 Copynumber: 47.9 Consensus size: 9
61789102 TACAAATATG
61789112 CATACATAA
1 CATACATAA
*
61789121 TATACATAA
1 CATACATAA
61789130 CAGTACATAA
1 CA-TACATAA
61789140 CATAACAT-A
1 CAT-ACATAA
*
61789149 TATACA-AA
1 CATACATAA
* *
61789157 TATA-AAAA
1 CATACATAA
61789165 CATAACAGTAAA
1 CAT-ACA-T-AA
61789177 CATAACAT-A
1 CAT-ACATAA
61789186 CATACATAA
1 CATACATAA
61789195 CAGTACATAA
1 CA-TACATAA
61789205 CATAACAT-A
1 CAT-ACATAA
* *
61789214 CGTATA-AA
1 CATACATAA
*
61789222 TATACA-AA
1 CATACATAA
61789230 CATCACAGTAAA
1 CAT-ACA-T-AA
61789242 CATAACAT-A
1 CAT-ACATAA
61789251 CATACATAA
1 CATACATAA
61789260 CATAACATAA
1 CAT-ACATAA
61789270 CATAACATAA
1 CAT-ACATAA
61789280 CATAACATAA
1 CAT-ACATAA
61789290 CATAACATAA
1 CAT-ACATAA
61789300 CATAACATAA
1 CAT-ACATAA
61789310 CATAACATAA
1 CAT-ACATAA
61789320 CATAACATAA
1 CAT-ACATAA
61789330 CATAACATAA
1 CAT-ACATAA
61789340 CATAACATAA
1 CAT-ACATAA
61789350 CATAACATAA
1 CAT-ACATAA
61789360 CATAACATAA
1 CAT-ACATAA
61789370 CATAACATAA
1 CAT-ACATAA
61789380 CATAACATAA
1 CAT-ACATAA
61789390 CATAACATAA
1 CAT-ACATAA
61789400 CATAACATAA
1 CAT-ACATAA
61789410 CATAACATAA
1 CAT-ACATAA
61789420 CATAACATAA
1 CAT-ACATAA
61789430 CATAACATAA
1 CAT-ACATAA
61789440 CAGTAAACATAA
1 CA-T--ACATAA
61789452 CATACAT-A
1 CATACATAA
61789460 CATA-ATAGTA
1 CATACATA--A
61789470 CATAACATAA
1 CAT-ACATAA
61789480 -ATACATAA
1 CATACATAA
61789488 CAGTACATAA
1 CA-TACATAA
61789498 CATACATAA
1 CATACATAA
* *
61789507 TATACATAT
1 CATACATAA
*
61789516 CAGTTTA-AAAA
1 CA---TACATAA
61789527 CATAACAT-A
1 CAT-ACATAA
61789536 CATACATAAA
1 CATACAT-AA
*
61789546 CAGTACAGAAA
1 CA-TACA-TAA
61789557 CATACATAA
1 CATACATAA
*
61789566 CAAACATA
1 CATACATA
61789574 CCTTTCACCC
Statistics
Matches: 396, Mismatches: 21, Indels: 72
0.81 0.04 0.15
Matches are distributed among these distances:
7 3 0.01
8 46 0.12
9 72 0.18
10 227 0.57
11 17 0.04
12 31 0.08
ACGTcount: A:0.57, C:0.19, G:0.02, T:0.21
Consensus pattern (9 bp):
CATACATAA
Found at i:61789144 original size:5 final size:5
Alignment explanation
Indices: 61789049--61789506 Score: 475
Period size: 5 Copynumber: 93.4 Consensus size: 5
61789039 ACTTTCATTA
* * *
61789049 AACAT GACAT -ACAT AATAT -ACA- AACAT AACAGT AATAT AACAAAT
1 AACAT AACAT AACAT AACAT AACAT AACAT AACA-T AACAT AAC--AT
* * *
61789094 AACA- AACAT ACAAAT ATGCAT -ACAT AATAT -ACAT AACAGT -ACAT
1 AACAT AACAT A-ACAT A-ACAT AACAT AACAT AACAT AACA-T AACAT
* *
61789138 AACAT AACAT -ATAT -ACA- AATAT AA-A- AACAT AACAGT AAACAT AACAT
1 AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACA-T -AACAT AACAT
61789185 -ACAT -ACAT AACAGT -ACAT AACAT AACAT -ACGTAT AA-AT ATACA-
1 AACAT AACAT AACA-T AACAT AACAT AACAT AAC--AT AACAT A-ACAT
*
61789228 AACAT CACAGT AAACAT AACAT -ACAT -ACAT AACAT AACAT AACAT AACAT
1 AACAT AACA-T -AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT
61789278 AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT
1 AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT
61789328 AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT
1 AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT
61789378 AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT
1 AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT AACAT
*
61789428 AACAT AACAT AACAGT AAACAT AACAT -ACAT -ACAT AATAGT -ACAT
1 AACAT AACAT AACA-T -AACAT AACAT AACAT AACAT AACA-T AACAT
61789473 AACAT AA-AT -ACAT AACAGT -ACAT AACAT -ACAT AA
1 AACAT AACAT AACAT AACA-T AACAT AACAT AACAT AA
61789507 TATACATATC
Statistics
Matches: 394, Mismatches: 19, Indels: 80
0.80 0.04 0.16
Matches are distributed among these distances:
3 3 0.01
4 72 0.18
5 279 0.71
6 23 0.06
7 17 0.04
ACGTcount: A:0.58, C:0.19, G:0.02, T:0.21
Consensus pattern (5 bp):
AACAT
Found at i:61789152 original size:65 final size:66
Alignment explanation
Indices: 61788975--61789479 Score: 403
Period size: 65 Copynumber: 7.6 Consensus size: 66
61788965 AGTGCTAAAT
* * *
61788975 ATAACAT-ACATACATAAACATACATAAGCA-AACATACACATAAC-AGTAATATACCACATAAT
1 ATAACATAACATACAT-AACATACATAA-CATAACATA-ACATAACAAATAACATA--ACATAAA
*
61789037 ATACTTTC
61 ATA--TAC
* * *
61789045 ATTAAACATGACATACATAATATACA-AACATAACAGTAATATAACAAATAACA-AACATACAAA
1 A-T-AACATAACATACATAACATACATAACATAACA-TAACATAACAAATAACATAACATA-AAA
*
61789108 TATGC
62 TATAC
* * * *
61789113 AT-ACATAATATACATAACAGTACATAACATAACAT-ATAT-ACAAATATA-AAAACATAACAGT
1 ATAACATAACATACATAACA-TACATAACATAACATAACATAACAAATA-ACATAACATAA-AAT
*
61789174 AAAC
63 ATAC
* * * *
61789178 ATAACAT-ACATACATAACAGTACATAACATAACAT-ACGT-ATAAATATACA-AACATCACAGT
1 ATAACATAACATACATAACA-TACATAACATAACATAACATAACAAATA-ACATAACAT-AAAAT
*
61789239 AAAC
63 ATAC
*
61789243 ATAACAT-ACATACATAACATAACATAACATAACATAACATAAC--ATAACATAACATAACATA-
1 ATAACATAACATACATAACAT-ACATAACATAACATAACATAACAAATAACATAACATAAAATAT
61789304 AC
65 AC
*
61789306 ATAACATAACATAACATAACATAACATAACATAACATAACATAAC--ATAACATAACATAACATA
1 ATAACATAACAT-ACATAACAT-ACATAACATAACATAACATAACAAATAACATAACATAAAATA
61789369 -AC
64 TAC
*
61789371 ATAACATAACATAACATAACATAACATAACATAACATAACATAAC--ATAACATAACATAACATA
1 ATAACATAACAT-ACATAACAT-ACATAACATAACATAACATAACAAATAACATAACATAAAATA
61789434 -AC
64 TAC
*
61789436 ATAACAGTAAACATAACAT-ACATACATAATAGT-ACATAACATAA
1 ATAACA-T-AACAT-ACATAACATACATAACA-TAACATAACATAA
61789480 ATACATAACA
Statistics
Matches: 388, Mismatches: 23, Indels: 53
0.84 0.05 0.11
Matches are distributed among these distances:
63 9 0.02
64 20 0.05
65 262 0.68
66 20 0.05
67 21 0.05
68 3 0.01
69 5 0.01
70 7 0.02
71 14 0.04
72 19 0.05
73 8 0.02
ACGTcount: A:0.57, C:0.19, G:0.02, T:0.22
Consensus pattern (66 bp):
ATAACATAACATACATAACATACATAACATAACATAACATAACAAATAACATAACATAAAATATA
C
Found at i:61789192 original size:25 final size:24
Alignment explanation
Indices: 61788975--61789574 Score: 435
Period size: 25 Copynumber: 25.0 Consensus size: 24
61788965 AGTGCTAAAT
61788975 ATAACAT-ACAT-ACATAAACATAC
1 ATAACATAACATAACAT-AACATAC
61788998 ATAAGCA-AACATACACATAACAGTA-
1 ATAA-CATAACATA-ACATAACA-TAC
* * * *
61789023 ATATAC--CACATAATAT-ACTTTC
1 ATA-ACATAACATAACATAACATAC
* *
61789045 ATTAAACATGACAT-ACATAATATAC
1 A-T-AACATAACATAACATAACATAC
*
61789070 A-AACATAACAGTAATATAACA-A-
1 ATAACATAACA-TAACATAACATAC
* *
61789092 ATAACA-AACAT-ACA-AATATGC
1 ATAACATAACATAACATAACATAC
*
61789113 AT-ACATAATAT-ACATAACAGTAC
1 ATAACATAACATAACATAACA-TAC
* * *
61789136 ATAACATAACAT-ATAT-ACAAAT
1 ATAACATAACATAACATAACATAC
61789158 ATAA-A-AACATAACAGTAAACATAAC
1 ATAACATAACATAACA-T-AACAT-AC
61789183 AT-ACAT-ACATAACAGT-ACATAAC
1 ATAACATAACATAACA-TAACAT-AC
*
61789206 ATAACAT-ACGTATAA-ATATACAAAC
1 ATAACATAAC--ATAACATA-ACATAC
*
61789231 ATCACAGTAAACATAACAT-ACATAC
1 ATAACA-T-AACATAACATAACATAC
61789256 ATAACATAACATAACATAACATAAC
1 ATAACATAACATAACATAACAT-AC
61789281 ATAACATAACATAACATAACATAAC
1 ATAACATAACATAACATAACAT-AC
61789306 ATAACATAACATAACATAACATAAC
1 ATAACATAACATAACATAACAT-AC
61789331 ATAACATAACATAACATAACATAAC
1 ATAACATAACATAACATAACAT-AC
61789356 ATAACATAACATAACATAACATAAC
1 ATAACATAACATAACATAACAT-AC
61789381 ATAACATAACATAACATAACATAAC
1 ATAACATAACATAACATAACAT-AC
61789406 ATAACATAACATAACATAACATAAC
1 ATAACATAACATAACATAACAT-AC
61789431 ATAACATAACAGTAAACATAACATAC
1 ATAACATAACA-T-AACATAACATAC
* *
61789457 AT-ACATAATAGT-ACATAACATAA
1 ATAACATAACA-TAACATAACATAC
61789480 AT-ACATAACAGT-ACATAACATAC
1 ATAACATAACA-TAACATAACATAC
* * *
61789503 ATAATAT-ACATATCAGTTTAA-AAAC
1 ATAACATAACATAACA---TAACATAC
61789528 ATAACAT-ACAT-ACATAAACAGTAC
1 ATAACATAACATAACAT-AACA-TAC
*
61789552 AGAAACAT-ACATAACA-AACATAC
1 A-TAACATAACATAACATAACATAC
61789575 CTTTCACCCT
Statistics
Matches: 486, Mismatches: 40, Indels: 102
0.77 0.06 0.16
Matches are distributed among these distances:
19 3 0.01
20 10 0.02
21 15 0.03
22 28 0.06
23 84 0.17
24 60 0.12
25 242 0.50
26 30 0.06
27 12 0.02
28 2 0.00
ACGTcount: A:0.57, C:0.19, G:0.03, T:0.22
Consensus pattern (24 bp):
ATAACATAACATAACATAACATAC
Found at i:61801352 original size:92 final size:89
Alignment explanation
Indices: 61801115--61801379 Score: 241
Period size: 92 Copynumber: 2.9 Consensus size: 89
61801105 CATCGAGGCT
* * *
61801115 GATGTCATATCCCAGACAAGGTCTTACACTAGCTCTCACATAT-TCGTGCCGATGCCATGTCCCA
1 GATG-CATGTCCCAGACATGGTCTTACACTAG--CTCACA-ATGT-G-GCTGATG-CATGTCCCA
* *
61801179 AACATGGTCTTACACTAACACATCTCGTAGCC
59 AACAT-GTCTTACACTAGCACATCTCGTACCC
* * ** * * *
61801211 GATGCATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTTGAGGTTGATGCATGTCTCAAACAT
1 GATGCATGTCCCAGACATGGTCTTACACTAGCTCAC--AATGTGGCTGATGCATGTCCCAAACAT
61801275 GTCTTACACTAGCAC-TCGTC-TCAATCCC
64 GTCTTACACTAGCACATC-TCGT--A-CCC
* *
61801303 GATGCCATGTTCCAGACATGGTCTTACACTAGCTCACAATGTGGCTGATGCATGTCCCAGACATG
1 GATG-CATGTCCCAGACATGGTCTTACACTAGCTCACAATGTGGCTGATGCATGTCCCAAACATG
61801368 TCTTACACTAGC
65 TCTTACACTAGC
61801380 TCACACCAGT
Statistics
Matches: 139, Mismatches: 21, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
89 3 0.02
90 16 0.12
91 14 0.10
92 49 0.35
93 15 0.11
94 26 0.19
95 12 0.09
96 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (89 bp):
GATGCATGTCCCAGACATGGTCTTACACTAGCTCACAATGTGGCTGATGCATGTCCCAAACATGT
CTTACACTAGCACATCTCGTACCC
Found at i:61802857 original size:46 final size:47
Alignment explanation
Indices: 61802730--61802935 Score: 176
Period size: 46 Copynumber: 4.4 Consensus size: 47
61802720 CATGTCCTGA
* *
61802730 ACATGGTCTTACACTGGCTATCATCATCGAGGCCGATGTCATGTCCCAG
1 ACATGGTCTTACACTGGCTA-CATC-TCGAGGCTGATGCCATGTCCCAG
* * *
61802779 TCATGGTCTTACATTGAC-ACATCTCGTA-GCTGATG-CATGTCCCAG
1 ACATGGTCTTACACTGGCTACATCTCG-AGGCTGATGCCATGTCCCAG
* *
61802824 ACAT-GTCTTACACTGGCTTACGTCTCGAGGCTGATG-CATGTCTCAG
1 ACATGGTCTTACACTGGC-TACATCTCGAGGCTGATGCCATGTCCCAG
* * * * * *
61802870 ACAT-GTCTTGCACTAGC-AGTCCTCTCAATGCTGATGCCATGTCCGA-
1 ACATGGTCTTACACTGGCTA--CATCTCGAGGCTGATGCCATGTCCCAG
61802916 AGCATGGTCTTACACTGGCT
1 A-CATGGTCTTACACTGGCT
61802936 CTCATAATGT
Statistics
Matches: 129, Mismatches: 18, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
44 12 0.09
45 14 0.11
46 61 0.47
47 15 0.12
48 12 0.09
49 15 0.12
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (47 bp):
ACATGGTCTTACACTGGCTACATCTCGAGGCTGATGCCATGTCCCAG
Found at i:61806988 original size:49 final size:49
Alignment explanation
Indices: 61806821--61807000 Score: 168
Period size: 49 Copynumber: 3.7 Consensus size: 49
61806811 TGGGATAAGA
* * **
61806821 TGTCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAACA-C-ATCAA
1 TGTCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATCGG
* * * * *
61806869 AGTCGATGCCATGTCCCAGACAGGTCTTACATTGACTTTCATATATCGAG
1 TGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCG-G
* * * * * * *
61806919 -GCCAATTCCGTATCCCAGACAAGTCTTACACTGGCTCTCATCTATCGG
1 TGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGG
*
61806967 TGTCGATGCCATGTCCTAGACAGGTCTTACACTG
1 TGTCGATGCCATGTCCCAGACAGGTCTTACACTG
61807001 ACACACAACA
Statistics
Matches: 102, Mismatches: 26, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
47 15 0.15
48 21 0.21
49 66 0.65
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
TGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGG
Found at i:61809030 original size:22 final size:22
Alignment explanation
Indices: 61809005--61809050 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
61808995 ACGAAGCATT
61809005 ACCAGACTTATTAAACAATTAA
1 ACCAGACTTATTAAACAATTAA
61809027 ACCAGACTTATTAAACAATTAA
1 ACCAGACTTATTAAACAATTAA
61809049 AC
1 AC
61809051 AATCATTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.50, C:0.20, G:0.04, T:0.26
Consensus pattern (22 bp):
ACCAGACTTATTAAACAATTAA
Found at i:61813971 original size:45 final size:44
Alignment explanation
Indices: 61813921--61814019 Score: 110
Period size: 44 Copynumber: 2.2 Consensus size: 44
61813911 TCCAATACTG
* * *
61813921 CTTAGGGAGACAAAATCTACAATCTTCAGT-TTGCTTCCTTGCTAC
1 CTTAGGGAGACAAAA-CTACAATCTTCA-TCCTACTCCCTTGCTAC
* * *
61813966 CTTAGGAAGATAAGACTACAATCTTCATCCTACTCCCTTGCTAC
1 CTTAGGGAGACAAAACTACAATCTTCATCCTACTCCCTTGCTAC
*
61814010 CTCAGGGAGA
1 CTTAGGGAGA
61814020 TAAGGCTAGT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
43 1 0.02
44 32 0.71
45 12 0.27
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (44 bp):
CTTAGGGAGACAAAACTACAATCTTCATCCTACTCCCTTGCTAC
Found at i:61813985 original size:44 final size:44
Alignment explanation
Indices: 61813937--61814378 Score: 232
Period size: 44 Copynumber: 10.0 Consensus size: 44
61813927 GAGACAAAAT
* * *
61813937 CTACAATCTTCAGTTTGCTTCCTTGCTACCTTAGGAAGATAAGA
1 CTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGA
* * *
61813981 CTACAATCTTCA-TCCTACTCCCTTGCTACCTCAGGGAGATAAGG
1 CTACAATCTTCAGT-CTGCTCCCTTGCTACCTCAGGAAGATAAGA
**** ** * * * * *
61814025 CTAGTGGCTAAAATCTGCTCCCCTACTTCCTCGGGAAGATAAGA
1 CTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGA
* * * * * * * * * *
61814069 TTCTCCATTTTTTA-TTTGCTCCAC-TACTA-CTTAGGGAGAAAAAA
1 --CTACAATCTTCAGTCTGCTCC-CTTGCTACCTCAGGAAGATAAGA
*
61814113 TCTACAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
1 -CTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGA
* *
61814158 CTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGGAGATAAGG
1 CTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGA
**** ** * * **
61814202 CTAGTGGCTAAAATCTGCTCCCCTGCTACCTTGGGAAGATAAGA
1 CTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGA
* * *** * ** ** *
61814246 TTCCCCGCCTT-TGATCTGCTCTATTGCTATATCAAGG-AGATAATA
1 CT-ACAATCTTCAG-TCTGCTCCCTTGCTACCTC-AGGAAGATAAGA
* *
61814291 TCTATAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGA
1 -CTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGA
* ** *
61814336 GTACAATCTTCAACCTGCTCCCTTGCTACATCA-GAGAGATAAG
1 CTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGA-AGATAAG
61814379 CCTAGTGGCT
Statistics
Matches: 288, Mismatches: 95, Indels: 30
0.70 0.23 0.07
Matches are distributed among these distances:
43 13 0.05
44 196 0.68
45 70 0.24
46 9 0.03
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (44 bp):
CTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGAAGATAAGA
Found at i:61813990 original size:177 final size:176
Alignment explanation
Indices: 61813727--61814468 Score: 932
Period size: 177 Copynumber: 4.2 Consensus size: 176
61813717 GGTGGCTAAA
** * * *
61813727 ATCTGCTTCC-CTACTGTCTT-GAGGAGACAAGCTCTACAATATTTAGTCTGCTCCCTTGCTACC
1 ATCTGC-TCCACTACTG-CTTAG-GGAGACAAAATCTACAATCTTCAGTCTGCTTCCTTGCTACC
* * * * * * *
61813790 TCAGGACGATAAGACTACAATCTTCAACTTGCTCTCTTACTACCTCAAAGAGATAAGACTGGTGG
63 TCAGGAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACCTCAGAGAGATAAGGCTAGTGG
* * *
61813855 CTAAAATCTACTCTCCTGCTACCTCGGGAAGATAAGATTCACCATTTAAG
128 CTAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACCATTT-TG
* * * *
61813905 ATTTGCTCCAATACTGCTTAGGGAGACAAAATCTACAATCTTCAGTTTGCTTCCTTGCTACCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGACAAAATCTACAATCTTCAGTCTGCTTCCTTGCTACCTCA
* * *
61813970 GGAAGATAAGACTACAATCTTCATCCTACTCCCTTGCTACCTCAGGGAGATAAGGCTAGTGGCTA
66 GGAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
* * * *
61814035 AAATCTGCTCCCCTACTTCCTCGGGAAGATAAGATTCTCCATTTTTT
131 AAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACCA-TTTTG
* * *
61814082 ATTTGCTCCACTACTACTTAGGGAGAAAAAATCTACAATCTTCAGTCTGCTTCCTTGCTACCTCA
1 ATCTGCTCCACTACTGCTTAGGGAGACAAAATCTACAATCTTCAGTCTGCTTCCTTGCTACCTCA
** *
61814147 GGAAGATAAGACTACAATCTTCAGTCTGCTCCCTTGCTACCTCAGGGAGATAAGGCTAGTGGCTA
66 GGAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
* * **
61814212 AAATCTGCTCCCCTGCTACCTTGGGAAGATAAGATTCCCCGCCTTTG
131 AAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACC-ATTTTG
* * * * * * * *
61814259 ATCTGCTCTATTGCT-ATATCAAGGAGATAATATCTATAATCTTCAGTCTGCTTCCTTGCTACCT
1 ATCTGCTCCACTACTGCT-T-AGGGAGACAAAATCTACAATCTTCAGTCTGCTTCCTTGCTACCT
* * *
61814323 CAGGAAGATAAGAGTACAATCTTCAACCTGCTCCCTTGCTACATCAGAGAGATAAGCCTAGTGGC
64 CAGGAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACCTCAGAGAGATAAGGCTAGTGGC
* *
61814388 TAAAATTTGCTCCCCTGCTACCTTGGGAAGATAAGATTCACCATTTTCG
129 TAAAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACCATTTT-G
*
61814437 ATCTGCTCCACTACTGCTTAGAGAGACAAAAT
1 ATCTGCTCCACTACTGCTTAGGGAGACAAAAT
61814469 GTAACTTCAC
Statistics
Matches: 488, Mismatches: 68, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
176 1 0.00
177 319 0.65
178 167 0.34
179 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (176 bp):
ATCTGCTCCACTACTGCTTAGGGAGACAAAATCTACAATCTTCAGTCTGCTTCCTTGCTACCTCA
GGAAGATAAGACTACAATCTTCAACCTGCTCCCTTGCTACCTCAGAGAGATAAGGCTAGTGGCTA
AAATCTGCTCCCCTGCTACCTCGGGAAGATAAGATTCACCATTTTG
Found at i:61818773 original size:24 final size:24
Alignment explanation
Indices: 61818741--61818790 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
61818731 TCTTAACCAG
*
61818741 CTGTTCTTGCATTTGTGTTTGCAT
1 CTGTTCTTGCATTTCTGTTTGCAT
* *
61818765 CTGTTCTTGCGTTTCTTTTTGCAT
1 CTGTTCTTGCATTTCTGTTTGCAT
61818789 CT
1 CT
61818791 ATTCCAACCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.06, C:0.20, G:0.18, T:0.56
Consensus pattern (24 bp):
CTGTTCTTGCATTTCTGTTTGCAT
Found at i:61821173 original size:23 final size:21
Alignment explanation
Indices: 61821146--61821195 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
61821136 AGTAATATAC
* *
61821146 AAAATAATTTACATTAATTTAA
1 AAAATAATATACA-TAAATTAA
61821168 ATAAATAATATACATAAATTAA
1 A-AAATAATATACATAAATTAA
61821190 AAAATA
1 AAAATA
61821196 GTGTAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 5 0.20
22 9 0.36
23 11 0.44
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (21 bp):
AAAATAATATACATAAATTAA
Found at i:61821219 original size:13 final size:13
Alignment explanation
Indices: 61821201--61821225 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61821191 AAATAGTGTA
61821201 ATATAAATAATAT
1 ATATAAATAATAT
61821214 ATATAAATAATA
1 ATATAAATAATA
61821226 ATGTATAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATATAAATAATAT
Found at i:61825380 original size:117 final size:117
Alignment explanation
Indices: 61825171--61825392 Score: 327
Period size: 117 Copynumber: 1.9 Consensus size: 117
61825161 ATCACCAGGA
* * * * *
61825171 GCCATAGCCTAGCTATGGTCTTACATATAAACACTATCGTGATCTAACCATGGTATTATGTTCAT
1 GCCATAGCCCAGCTATGCTCTTACATATAAACACTACCATGATCTAACCATGGTATTACGTTCAT
*
61825236 AGTGTCATAACCCAGTTATGGTCTTATCCGTCAATTCATCCTTTACATTAAT
66 AGTGCCATAACCCAGTTATGGTCTTATCCGTCAATTCATCCTTTACATTAAT
* * * * *
61825288 GCCATAGCCCAGCTATGCTCTTGCATATAAACACTGCCATGGTCTAACCATGGTCTTACGTTTAT
1 GCCATAGCCCAGCTATGCTCTTACATATAAACACTACCATGATCTAACCATGGTATTACGTTCAT
* *
61825353 AGTGCCATAACCCAGTTATGGTTTTATCTGTCAATTCATC
66 AGTGCCATAACCCAGTTATGGTCTTATCCGTCAATTCATC
61825393 TTGAGCCACA
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
117 92 1.00
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.35
Consensus pattern (117 bp):
GCCATAGCCCAGCTATGCTCTTACATATAAACACTACCATGATCTAACCATGGTATTACGTTCAT
AGTGCCATAACCCAGTTATGGTCTTATCCGTCAATTCATCCTTTACATTAAT
Found at i:61829014 original size:46 final size:44
Alignment explanation
Indices: 61828958--61829076 Score: 141
Period size: 46 Copynumber: 2.6 Consensus size: 44
61828948 AAGCTAACGC
*
61828958 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGT-CAATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTC--AT-AATGTGCAATG
* *
61829004 CATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGT-G-CAATG
* *
61829050 CATGTCCCAAACATGTCTTCCACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
61829077 ACACATATCA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
43 5 0.08
44 1 0.02
46 58 0.91
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.29
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATAATGTGCAATG
Found at i:61840839 original size:40 final size:39
Alignment explanation
Indices: 61840755--61840936 Score: 192
Period size: 39 Copynumber: 4.6 Consensus size: 39
61840745 TTGAATGATG
* * *
61840755 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAT
* *
61840794 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
* *
61840835 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
*
61840874 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT
** *
61840912 AACGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCGAAGGCATTTG
61840937 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
37 9 0.07
38 12 0.10
39 49 0.40
40 41 0.34
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:61840891 original size:79 final size:78
Alignment explanation
Indices: 61840755--61840936 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 78
61840745 TTGAATGATG
*
61840755 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCA-T
61840819 TGTGCGAGATACTAAT
64 TGTGCGAGATACT-AT
* * * **
61840835 TCCGGGCTAAGCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATT
*
61840898 GTGCGAGTTACTAT
65 GTGCGAGATACTAT
** * *
61840912 AACGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTG
61840937 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 23 0.26
78 14 0.16
79 34 0.38
80 18 0.20
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTG
TGCGAGATACTAT
Found at i:61845294 original size:20 final size:21
Alignment explanation
Indices: 61845258--61845296 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
61845248 ACTTAATGTT
*
61845258 TATTTTAGATATTATTTGATA
1 TATTTGAGATATTATTTGATA
61845279 TATTTGAGAT-TTATTTGA
1 TATTTGAGATATTATTTGA
61845297 GAATTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (21 bp):
TATTTGAGATATTATTTGATA
Found at i:61845529 original size:25 final size:25
Alignment explanation
Indices: 61845495--61845543 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
61845485 AATGTGAAAA
*
61845495 GGGGTTGCTATGTGCTGATTCCCCC
1 GGGGTTGCTAAGTGCTGATTCCCCC
61845520 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
61845544 GGTTCATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.10, C:0.27, G:0.33, T:0.31
Consensus pattern (25 bp):
GGGGTTGCTAAGTGCTGATTCCCCC
Found at i:61845574 original size:102 final size:103
Alignment explanation
Indices: 61845419--61845683 Score: 378
Period size: 102 Copynumber: 2.6 Consensus size: 103
61845409 TTGTATATAA
** *
61845419 AGGGGTTGCTGTGTGCTGATT-CCCGATTCATGGTGGTGCTATGTGCG-TGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGAT-ATCCACCATATCTT
61845482 TGAAATG-TGAAAAGGGGTTGCTATGTGCTGATTCCCCC
65 TGAAATGTTGAAAAGGGGTTGCTATGTGCTGATTCCCCC
*
61845520 -GGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCGATATCCACCATATCTT
*
61845584 TGAAATGTTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TGAAATGTTGAAAAGGGGTTGCTATGTGCTGATTCCCCC
* *
61845623 GAGGGGTTGCTAAGTGCTGA-TCCCGCGATTCAGCGGGTGGTGCTAAGTGCGAGATCCACCA
1 -AGGGGTTGCTAAGTGCTGATTCCC-CGATTCA--TGGTGGTGCTAAGTGCGATATCCACCA
61845684 ATAACGGTTA
Statistics
Matches: 147, Mismatches: 9, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
100 18 0.12
101 8 0.05
102 37 0.25
103 31 0.21
104 4 0.03
105 24 0.16
106 25 0.17
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGATATCCACCATATCTTT
GAAATGTTGAAAAGGGGTTGCTATGTGCTGATTCCCCC
Found at i:61852752 original size:104 final size:103
Alignment explanation
Indices: 61852573--61852838 Score: 444
Period size: 104 Copynumber: 2.6 Consensus size: 103
61852563 TTGTATATAA
** *
61852573 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATGGTGGTGCTATGTGCG-TGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGAT-ATCCACCATATCTT
61852637 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
61852676 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCGATATCCACCATATCTT
61852741 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
61852780 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCGATATCCACCA
61852839 ATAACGGTTA
Statistics
Matches: 153, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 28 0.18
104 124 0.81
105 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGATATCCACCATATCTTT
GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:61854151 original size:40 final size:40
Alignment explanation
Indices: 61854044--61854189 Score: 199
Period size: 40 Copynumber: 3.7 Consensus size: 40
61854034 TACAGACCAT
* *
61854044 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
61854084 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
61854123 ATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
61854164 A-CCGGGCTATGTCCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTG
61854190 AACGAGTAGC
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 35 0.37
40 57 0.61
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:61854222 original size:80 final size:79
Alignment explanation
Indices: 61854057--61854223 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 79
61854047 CGGACTAAGA
* * **
61854057 TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTA
*
61854122 AATCCGGGTTAAGT
66 AATCCGGGTTAAAT
* * *
61854136 CCCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-
* *
61854199 CTATATCCGGTTTAAAT
63 CTAAATCCGGGTTAAAT
61854216 TCCGAAGG
1 TCCGAAGG
61854224 TACGTGATTT
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
78 2 0.03
79 33 0.45
80 39 0.53
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTA
AATCCGGGTTAAAT
Found at i:61856889 original size:20 final size:20
Alignment explanation
Indices: 61856848--61856889 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
61856838 ATTTCATTTA
*
61856848 TTGCATTTAGATTAATTCAT
1 TTGCATTTAGATTAATTAAT
61856868 TTGCATTTA-ATTAATTTAAT
1 TTGCATTTAGATTAA-TTAAT
61856888 TT
1 TT
61856890 AACACCTACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (20 bp):
TTGCATTTAGATTAATTAAT
Found at i:61858018 original size:43 final size:43
Alignment explanation
Indices: 61857965--61858047 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
61857955 ATTTATAAGT
*
61857965 AAGTTTTAACTTTTCGCCTATTAATTATAAATTTATTTAGTCA
1 AAGTTTTAACTTTTCGCCTATTAATAATAAATTTATTTAGTCA
61858008 AAGTTTTAACTTTTCGCCTATTAATAATAAATTTATTTAG
1 AAGTTTTAACTTTTCGCCTATTAATAATAAATTTATTTAG
61858048 CCACAAAGCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (43 bp):
AAGTTTTAACTTTTCGCCTATTAATAATAAATTTATTTAGTCA
Found at i:61862479 original size:103 final size:102
Alignment explanation
Indices: 61862326--61862530 Score: 340
Period size: 103 Copynumber: 2.0 Consensus size: 102
61862316 AGTGAAAGAG
* *
61862326 AAAAATGGAAGAATATGAGAGAAAATCCGACATTTTGTTTTACAACAAGTA-GGAGAAGATACCG
1 AAAAATGGAAGAATATGAGAAAAAATCCCACATTTTGTTTTACAACAAGTATGGAGAAGATACCG
*
61862390 CAAGTATTACAACATTTTGCTAAAAAGCCCGACTCATT
66 CAAGTATTACAACATTTT-CTAAAAAGCCCGAATCATT
* *
61862428 AAAAATGGAAGAATATGAGAAAAAAATCCCACATTTTGTTTTATAGCAAGTATGGAGAAGATACC
1 AAAAATGGAAGAATATGAG-AAAAAATCCCACATTTTGTTTTACAACAAGTATGGAGAAGATACC
61862493 GCAAGTATTACAACATTTTCTAAAAAGCCCGAATCATT
65 GCAAGTATTACAACATTTTCTAAAAAGCCCGAATCATT
61862531 CCTTATTTAG
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
102 19 0.20
103 46 0.48
104 31 0.32
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (102 bp):
AAAAATGGAAGAATATGAGAAAAAATCCCACATTTTGTTTTACAACAAGTATGGAGAAGATACCG
CAAGTATTACAACATTTTCTAAAAAGCCCGAATCATT
Found at i:61867512 original size:13 final size:13
Alignment explanation
Indices: 61867494--61867522 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
61867484 ATTGAATCCG
61867494 GTAGGTCCAACTT
1 GTAGGTCCAACTT
61867507 GTAGGTCCAACTT
1 GTAGGTCCAACTT
61867520 GTA
1 GTA
61867523 AGCTACGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (13 bp):
GTAGGTCCAACTT
Found at i:61877822 original size:49 final size:49
Alignment explanation
Indices: 61877765--61877863 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
61877755 TAACATTTCA
61877765 AATATAACATATTTATTACTCACATTAATCAAATTGACCCAAAAATCAT
1 AATATAACATATTTATTACTCACATTAATCAAATTGACCCAAAAATCAT
*
61877814 AATATAACATATTTATTACTCATATTAATCAAATTGACCCAAAAATCAT
1 AATATAACATATTTATTACTCACATTAATCAAATTGACCCAAAAATCAT
61877863 A
1 A
61877864 CTTTTACAAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.33
Consensus pattern (49 bp):
AATATAACATATTTATTACTCACATTAATCAAATTGACCCAAAAATCAT
Found at i:61888981 original size:3 final size:3
Alignment explanation
Indices: 61888973--61889010 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
61888963 ATGCACTAAC
61888973 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
61889011 CTACTTAAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:61893081 original size:43 final size:43
Alignment explanation
Indices: 61892999--61893081 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 43
61892989 GATATATGTG
*
61892999 GCATCCAAGCTCGTTGAGTGGTCCGAGTCCATTACGGATGCGA
1 GCATCCAAGCTCGTTGAGTGGTCCGAGTCCATAACGGATGCGA
* *
61893042 GCATCTAAGCTCGTTGAGTGGTCCGAG-CTCATAATGGATG
1 GCATCCAAGCTCGTTGAGTGGTCCGAGTC-CATAACGGATG
61893082 TGATGCATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (43 bp):
GCATCCAAGCTCGTTGAGTGGTCCGAGTCCATAACGGATGCGA
Found at i:61893839 original size:20 final size:20
Alignment explanation
Indices: 61893814--61893855 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
61893804 GTAAAGTAAG
61893814 ACTACAGTCAAGAAGAATGA
1 ACTACAGTCAAGAAGAATGA
61893834 ACTACAGTCAAGAAGAATGA
1 ACTACAGTCAAGAAGAATGA
61893854 AC
1 AC
61893856 ATTAAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.17, G:0.19, T:0.14
Consensus pattern (20 bp):
ACTACAGTCAAGAAGAATGA
Found at i:61898164 original size:6 final size:6
Alignment explanation
Indices: 61898155--61898191 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
61898145 TAAGTCTAAG
*
61898155 AAAATA AAAATA AACATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA A
61898192 GAGGAAACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:61906586 original size:28 final size:28
Alignment explanation
Indices: 61906554--61906618 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
61906544 ATTTACTAGA
*
61906554 ATACCCCTATGTATGCAAAATTACCA-TT
1 ATACCCCTATGTATGCAAAATGA-CATTT
*
61906582 ATACCCCTATGTATGCTAAATGACATTT
1 ATACCCCTATGTATGCAAAATGACATTT
61906610 ATACCCCTA
1 ATACCCCTA
61906619 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 2 0.06
28 32 0.94
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACATTT
Found at i:61906825 original size:29 final size:28
Alignment explanation
Indices: 61906724--61906814 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
61906714 AGGAAGCGTC
*
61906724 CTGGTGGCTA-TGCCACAAATTATCTATT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
61906752 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
* *
61906780 CTGGTGGCACTACCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
61906809 CTGGTG
1 CTGGTG
61906815 ACTCTGTCAC
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
28 49 0.88
29 7 0.12
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:61911647 original size:6 final size:6
Alignment explanation
Indices: 61911638--61911674 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
61911628 TAAGTCTAAG
* *
61911638 AAAATA AAAATG AACATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA A
61911675 GATGAAACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:61914952 original size:80 final size:80
Alignment explanation
Indices: 61914859--61915018 Score: 293
Period size: 80 Copynumber: 2.0 Consensus size: 80
61914849 ACAGGTGAAG
*
61914859 GCATGAAGGTCGTAAAGCCTCAAAATTTAACTTTCATATATACACACGTATAACGTAACATTTAT
1 GCATGAAGGTCGTAAAGCCTCAAAATTTAACTTTCATATATACACACGTATAACATAACATTTAT
61914924 CATCAACATAATCAT
66 CATCAACATAATCAT
*
61914939 GCATGAAGGTCGTAAAGCCTCAAAATTTGACTTTCATATATACACACGTATAACATAACATTTAT
1 GCATGAAGGTCGTAAAGCCTCAAAATTTAACTTTCATATATACACACGTATAACATAACATTTAT
*
61915004 CCTCAACATAATCAT
66 CATCAACATAATCAT
61915019 TATAATCATT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 77 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (80 bp):
GCATGAAGGTCGTAAAGCCTCAAAATTTAACTTTCATATATACACACGTATAACATAACATTTAT
CATCAACATAATCAT
Found at i:61919924 original size:106 final size:106
Alignment explanation
Indices: 61919734--61919938 Score: 392
Period size: 106 Copynumber: 1.9 Consensus size: 106
61919724 ACAAAAATTG
*
61919734 TTATAAGATGAAGTTTATATGCTTAGACTCCTTAATGAGTCTAGTTTCAAATTAAATAAACTAGG
1 TTATAAGATGAAGTTTATATGCTTAGACTCCTTAATGAGTCTAGTTTCAAATTAAATAAACTAGA
61919799 ACATATTTTGAATTCTGTACAATGAGAAATTTGAACATAGT
66 ACATATTTTGAATTCTGTACAATGAGAAATTTGAACATAGT
61919840 TTATAAGATGAAGTTTATATGCTTAGACTCCTTAATGAGTCTAGTTTCAAATTAAATAAACTAGA
1 TTATAAGATGAAGTTTATATGCTTAGACTCCTTAATGAGTCTAGTTTCAAATTAAATAAACTAGA
*
61919905 ACATATTTTGAATTTTGTACAATGAGAAATTTGA
66 ACATATTTTGAATTCTGTACAATGAGAAATTTGA
61919939 TTCGTAGTGA
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
106 97 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (106 bp):
TTATAAGATGAAGTTTATATGCTTAGACTCCTTAATGAGTCTAGTTTCAAATTAAATAAACTAGA
ACATATTTTGAATTCTGTACAATGAGAAATTTGAACATAGT
Found at i:61920426 original size:25 final size:25
Alignment explanation
Indices: 61920398--61920472 Score: 59
Period size: 25 Copynumber: 3.1 Consensus size: 25
61920388 GCCATTGTAA
61920398 TCGTTCGGCAACATTCGAGGTAAGT
1 TCGTTCGGCAACATTCGAGGTAAGT
* ** **
61920423 TCGTAATC-G-AATAGCCGTTGTAA--
1 TCGT--TCGGCAACATTCGAGGTAAGT
61920446 TCGTTCGGCAACATTCGAGGTAAGT
1 TCGTTCGGCAACATTCGAGGTAAGT
61920471 TC
1 TC
61920473 TTAAGTGTTT
Statistics
Matches: 34, Mismatches: 10, Indels: 12
0.61 0.18 0.21
Matches are distributed among these distances:
21 2 0.06
22 1 0.03
23 13 0.38
25 15 0.44
26 1 0.03
27 2 0.06
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (25 bp):
TCGTTCGGCAACATTCGAGGTAAGT
Found at i:61920448 original size:48 final size:48
Alignment explanation
Indices: 61920377--61920472 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
61920367 AAAAGAGAAA
61920377 GTAATCGAATAGCCATTGTAATCGTTCGGCAACATTCGAGGTAAGTTC
1 GTAATCGAATAGCCATTGTAATCGTTCGGCAACATTCGAGGTAAGTTC
*
61920425 GTAATCGAATAGCCGTTGTAATCGTTCGGCAACATTCGAGGTAAGTTC
1 GTAATCGAATAGCCATTGTAATCGTTCGGCAACATTCGAGGTAAGTTC
61920473 TTAAGTGTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (48 bp):
GTAATCGAATAGCCATTGTAATCGTTCGGCAACATTCGAGGTAAGTTC
Found at i:61920468 original size:23 final size:23
Alignment explanation
Indices: 61920394--61920468 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
61920384 AATAGCCATT
61920394 GTAATCGTTCGGCAACATTCGAG
1 GTAATCGTTCGGCAACATTCGAG
* ** **
61920417 GTAAGTTCGTAATC-G-AATAGCCGTT
1 GTAA--TCGT--TCGGCAACATTCGAG
61920442 GTAATCGTTCGGCAACATTCGAG
1 GTAATCGTTCGGCAACATTCGAG
61920465 GTAA
1 GTAA
61920469 GTTCTTAAGT
Statistics
Matches: 36, Mismatches: 10, Indels: 12
0.62 0.17 0.21
Matches are distributed among these distances:
21 2 0.06
22 1 0.03
23 17 0.47
25 13 0.36
26 1 0.03
27 2 0.06
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (23 bp):
GTAATCGTTCGGCAACATTCGAG
Found at i:61922160 original size:45 final size:45
Alignment explanation
Indices: 61922085--61922424 Score: 425
Period size: 45 Copynumber: 7.6 Consensus size: 45
61922075 TTGATTTGAT
* * * *
61922085 TATTTGGGCCTTTAAGCCTTGCAGACTATGATGCCAGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
* *
61922130 TATTCGGGCCTTTGAGCCTAGCAGGATATGATGCCAGTGAAATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
*
61922175 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCGAGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
* * * *
61922220 TATTCGGGCCTTTGAGCCTAACAGGCTATGATGTCGGTGAAATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
* * *
61922265 TATTCGGGCCTTTGAGCATAGCAAGCTATGATGCCAGTGAAATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
* * *
61922310 TATTCGGGCCTTTGAGCCTAGTAGGCTATGATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
* * * **
61922355 TTTTCGAG-CTTTCGAGCCTAGCAGGCTATAATGCTGGTGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATGATGCCAGTGAAAT-AC
* *
61922400 TAATCGGGCC-TCGAGCCTAGCAGGC
1 TATTCGGGCCTTTGAGCCTAGCAGGC
61922425 GAAATACCGG
Statistics
Matches: 257, Mismatches: 35, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
44 17 0.07
45 238 0.93
46 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATGATGCCAGTGAAATAC
Found at i:61929293 original size:20 final size:21
Alignment explanation
Indices: 61929247--61929299 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
61929237 ATCTAATTAC
61929247 AAATATTTAATAATTATATTT
1 AAATATTTAATAATTATATTT
61929268 AAATATTTAA-AA-TATAATTT
1 AAATATTTAATAATTAT-ATTT
*
61929288 ATATATTCTAAT
1 AAATATT-TAAT
61929300 TAAATTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 3 0.11
20 12 0.43
21 13 0.46
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
AAATATTTAATAATTATATTT
Found at i:61944176 original size:57 final size:57
Alignment explanation
Indices: 61944107--61944220 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
61944097 ACTAAAGACT
*
61944107 TTTCGGGCGTTACATATTCACTGTCAAGAAAATTACGGAGCTATTAATGGCATTCAA
1 TTTCGGGCGTTACATATTCACTGTCAAGAAAATTACAGAGCTATTAATGGCATTCAA
61944164 TTTCGGGCGTTACATATTCACTGTCAAGAAAATTACAGAGCTATTAATGGCATTCAA
1 TTTCGGGCGTTACATATTCACTGTCAAGAAAATTACAGAGCTATTAATGGCATTCAA
61944221 CTAAAAGTGA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (57 bp):
TTTCGGGCGTTACATATTCACTGTCAAGAAAATTACAGAGCTATTAATGGCATTCAA
Found at i:61957587 original size:50 final size:50
Alignment explanation
Indices: 61957513--61957762 Score: 241
Period size: 50 Copynumber: 5.0 Consensus size: 50
61957503 TAAGATGGTT
* * *
61957513 TTAGGTCACGTATGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * ** * * *
61957563 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGACAAC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAG
*** * * * ** *
61957614 TTCTATCACGTGTGCAGTACTAAGTGTAGGCTACTACGTGTAATAGATGG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* *** *
61957664 TTAGGTCACATGTGTAATACTAAGTGCAGGCTACTACGTGTATTGGATTG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * *
61957714 TT-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
61957763 CTTCGGTTAC
Statistics
Matches: 155, Mismatches: 44, Indels: 3
0.77 0.22 0.01
Matches are distributed among these distances:
49 39 0.25
50 81 0.52
51 35 0.23
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
Found at i:61957650 original size:101 final size:101
Alignment explanation
Indices: 61957518--61957699 Score: 283
Period size: 101 Copynumber: 1.8 Consensus size: 101
61957508 TGGTTTTAGG
* * * * *
61957518 TCACGTATGTAGTAGTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTAC
1 TCACGTATGCAGTACTAAGTGCAGGCTACTACGTGTAACAGATAGTTAGGTCACATGTGTAATAC
61957583 TAAGTGCAGGCTACTATGCATACCCGACAACTTCTA
66 TAAGTGCAGGCTACTATGCATACCCGACAACTTCTA
* * * *
61957619 TCACGTGTGCAGTACTAAGTGTAGGCTACTACGTGTAATAGATGGTTAGGTCACATGTGTAATAC
1 TCACGTATGCAGTACTAAGTGCAGGCTACTACGTGTAACAGATAGTTAGGTCACATGTGTAATAC
61957684 TAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTA
61957700 CGTGTATTGG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (101 bp):
TCACGTATGCAGTACTAAGTGCAGGCTACTACGTGTAACAGATAGTTAGGTCACATGTGTAATAC
TAAGTGCAGGCTACTATGCATACCCGACAACTTCTA
Found at i:61961938 original size:43 final size:42
Alignment explanation
Indices: 61961891--61961989 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
61961881 TCCAAGACGT
61961891 GGTCTTACATGTAACCAAATATCGATGCC-ACTATCCCAGACAA
1 GGTCTTACATGTAACCAAATAT-GATGCCGA-TATCCCAGACAA
* * * * *
61961934 GGTCTTACATGAAATCAAATATGATGCCGATGTCCTAGACAT
1 GGTCTTACATGTAACCAAATATGATGCCGATATCCCAGACAA
*
61961976 GGTCTTACACGTAA
1 GGTCTTACATGTAA
61961990 ATCATAATTC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 27 0.56
43 21 0.44
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.26
Consensus pattern (42 bp):
GGTCTTACATGTAACCAAATATGATGCCGATATCCCAGACAA
Found at i:61962023 original size:44 final size:44
Alignment explanation
Indices: 61961870--61962043 Score: 144
Period size: 43 Copynumber: 4.0 Consensus size: 44
61961860 AAAGCTCATA
* * * *
61961870 CAATGCCAACGTCCAAGACGTGGTCTTACATGT-AACCAAATAT
1 CAATGCCAATGTCCAAGACATGGTCTTACACGTAAATCAAATAT
* * * * * *
61961913 CGATGCCACTATCCCAGACAAGGTCTTACATG-AAATCAAATAT
1 CAATGCCAATGTCCAAGACATGGTCTTACACGTAAATCAAATAT
* * *
61961956 -GATGCCGATGTCCTAGACATGGTCTTACACGTAAATCATAAT-T
1 CAATGCCAATGTCCAAGACATGGTCTTACACGTAAATCA-AATAT
* * *
61961999 CAATGCCAATGTCTC-AGACGTGGTCTTACACG-AAAACACATAT
1 CAATGCCAATGTC-CAAGACATGGTCTTACACGTAAATCAAATAT
61962042 CA
1 CA
61962044 GATCCTATGT
Statistics
Matches: 106, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
42 27 0.25
43 49 0.46
44 29 0.27
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (44 bp):
CAATGCCAATGTCCAAGACATGGTCTTACACGTAAATCAAATAT
Found at i:61967181 original size:30 final size:30
Alignment explanation
Indices: 61967147--61967234 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 30
61967137 CTAGCTTATA
* *
61967147 TTCAGCTCATGAGCTAAACCTTAGCTCAAC
1 TTCAGCTTAAGAGCTAAACCTTAGCTCAAC
* * *
61967177 TTCAGCTTAGGAG-TATAATCTCAGCTCAAC
1 TTCAGCTTAAGAGCTA-AACCTTAGCTCAAC
* * *
61967207 TTTAGCTTAAGGGCTAAAGCTTAGCTCA
1 TTCAGCTTAAGAGCTAAACCTTAGCTCA
61967235 TTTTAGCTCA
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
29 2 0.04
30 43 0.91
31 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.30
Consensus pattern (30 bp):
TTCAGCTTAAGAGCTAAACCTTAGCTCAAC
Found at i:61969831 original size:41 final size:40
Alignment explanation
Indices: 61969765--61969842 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 40
61969755 ACAGGGGTTT
*
61969765 TTACACGGCCTGACACACGCTCGTGTCTATAGCCCGTGCCCC
1 TTACACGGCCTGA-ACACGCCCGTGTC-ATAGCCCGTGCCCC
*
61969807 TTACACGGCCATG-ACACGCCCGTGTCCTAGCCCGTG
1 TTACACGGCC-TGAACACGCCCGTGTCATAGCCCGTG
61969843 TCTAAAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 9 0.27
41 12 0.36
42 10 0.30
43 2 0.06
ACGTcount: A:0.17, C:0.40, G:0.23, T:0.21
Consensus pattern (40 bp):
TTACACGGCCTGAACACGCCCGTGTCATAGCCCGTGCCCC
Found at i:61970763 original size:46 final size:48
Alignment explanation
Indices: 61970693--61970867 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 48
61970683 TTATTTGTGT
*
61970693 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGATGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAA
61970739 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGT--
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAA
** * ** **
61970783 GTTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCAATA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTA-A
* *
61970832 GTCAGTGTAAGACCATGTCAGGGACATGGCATCGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
61970868 ATTATACCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
44 10 0.09
45 14 0.12
46 56 0.50
49 33 0.29
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGTAA
Found at i:61973130 original size:46 final size:46
Alignment explanation
Indices: 61973079--61973252 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
61973069 ACATCTCGTA
*
61973079 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCGCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCACGAG
* * * * * *
61973125 GCCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAATT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCACGA-G
* * * * *
61973172 G-CAATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCACGAG
61973219 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
61973253 ATACAAATAA
Statistics
Matches: 104, Mismatches: 19, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
46 55 0.53
47 28 0.27
48 21 0.20
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCACGAG
Found at i:61998145 original size:18 final size:19
Alignment explanation
Indices: 61998124--61998164 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
61998114 TTATTAAATT
61998124 TTAATAAAAATA-TAAAAA
1 TTAATAAAAATATTAAAAA
*
61998142 TTAA-AAAATTATTAAAAA
1 TTAATAAAAATATTAAAAA
61998160 TTAAT
1 TTAAT
61998165 TTTTTATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
TTAATAAAAATATTAAAAA
Found at i:61998154 original size:36 final size:36
Alignment explanation
Indices: 61998114--61998223 Score: 89
Period size: 36 Copynumber: 2.8 Consensus size: 36
61998104 TTTAGACAAT
61998114 TTATTAAATTTTAATAAAAATATAAAAATTA-AAAAA
1 TTATTAAATTTT-ATAAAAATATAAAAATTATAAAAA
*
61998150 TTATTAAAAATTAATTTTTTATAAAAATAGTAAAAA-AATAAAAA
1 TTATT----A--AA--TTTTATAAAAATA-TAAAAATTATAAAAA
*
61998194 TTATAAAATTTTATAAAAATCATAAAAATT
1 TTATTAAATTTTATAAAAAT-ATAAAAATT
61998224 TTTAATGAAC
Statistics
Matches: 59, Mismatches: 3, Indels: 23
0.69 0.04 0.27
Matches are distributed among these distances:
36 23 0.39
37 1 0.02
38 2 0.03
40 2 0.03
42 2 0.03
43 10 0.17
44 19 0.32
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (36 bp):
TTATTAAATTTTATAAAAATATAAAAATTATAAAAA
Found at i:61998163 original size:43 final size:43
Alignment explanation
Indices: 61998116--61998201 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
61998106 TAGACAATTT
*
61998116 ATTAAATTTTAATAAAAATA-T-AAAAATTAAAAAATTATTAAAA
1 ATTAAATTTTAATAAAAATAGTAAAAAAAT-AAAAATTA-TAAAA
* *
61998159 ATTAATTTTTTATAAAAATAGTAAAAAAATAAAAATTATAAAA
1 ATTAAATTTTAATAAAAATAGTAAAAAAATAAAAATTATAAAA
61998202 TTTTATAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 23 0.61
44 9 0.24
45 6 0.16
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.35
Consensus pattern (43 bp):
ATTAAATTTTAATAAAAATAGTAAAAAAATAAAAATTATAAAA
Found at i:61998385 original size:18 final size:18
Alignment explanation
Indices: 61998362--61998469 Score: 55
Period size: 17 Copynumber: 6.2 Consensus size: 18
61998352 TTGTTACGAC
61998362 TTTATAAAATTTTATAAT
1 TTTATAAAATTTTATAAT
*
61998380 TTTAT-AATTTTTACT-AT
1 TTTATAAAATTTTA-TAAT
*** *
61998397 TTT-TATTTTTTTCTAAT
1 TTTATAAAATTTTATAAT
* *
61998414 TTT-TAATATTTTAT-TT
1 TTTATAAAATTTTATAAT
* *
61998430 TTTATTAAAATTTAATAAA
1 TTTA-TAAAATTTTATAAT
* * *
61998449 TTTATAGATTTTTTTAAT
1 TTTATAAAATTTTATAAT
61998467 TTT
1 TTT
61998470 TTTAATTTTT
Statistics
Matches: 67, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
16 6 0.09
17 30 0.45
18 27 0.40
19 4 0.06
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (18 bp):
TTTATAAAATTTTATAAT
Found at i:61998398 original size:17 final size:17
Alignment explanation
Indices: 61998371--61998426 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
61998361 CTTTATAAAA
61998371 TTTTA-TAATTTTATAAT
1 TTTTACTAATTTT-TAAT
*
61998388 TTTTACT-ATTTTTATT
1 TTTTACTAATTTTTAAT
*
61998404 TTTTTCTAATTTTTAAT
1 TTTTACTAATTTTTAAT
61998421 ATTTTA
1 -TTTTA
61998427 TTTTTTATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
16 9 0.28
17 18 0.56
18 5 0.16
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTACTAATTTTTAAT
Found at i:61998408 original size:26 final size:25
Alignment explanation
Indices: 61998370--61998432 Score: 81
Period size: 26 Copynumber: 2.5 Consensus size: 25
61998360 ACTTTATAAA
** *
61998370 ATTTTATAATTTTATAATTTTTACT
1 ATTTTATTTTTTTATAATTTTTAAT
*
61998395 ATTTTTATTTTTTTCTAATTTTTAAT
1 A-TTTTATTTTTTTATAATTTTTAAT
61998421 ATTTTATTTTTT
1 ATTTTATTTTTT
61998433 ATTAAAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 12 0.36
26 21 0.64
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.71
Consensus pattern (25 bp):
ATTTTATTTTTTTATAATTTTTAAT
Found at i:61998492 original size:9 final size:9
Alignment explanation
Indices: 61998456--61998481 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
61998446 AAATTTATAG
61998456 ATTTTTTTA
1 ATTTTTTTA
61998465 ATTTTTTTA
1 ATTTTTTTA
61998474 ATTTTTTT
1 ATTTTTTT
61998482 TTCTAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
ATTTTTTTA
Found at i:62004685 original size:39 final size:40
Alignment explanation
Indices: 62004585--62004719 Score: 236
Period size: 40 Copynumber: 3.4 Consensus size: 40
62004575 TCCAATTTCT
* *
62004585 AGCACAAAGCCTGCGGGATTTAACCCGGATATCTATTAGC
1 AGCACAAAGCCTGCGGGATTTAACCTGGATATCTATTACC
62004625 AGCACAAAGCCTGCGGGATTTAACCTGGATATCTATTACC
1 AGCACAAAGCCTGCGGGATTTAACCTGGATATCTATTACC
*
62004665 AGCAC-AAGCCTGCGGGATTTAACCTGGATATCTATTGCC
1 AGCACAAAGCCTGCGGGATTTAACCTGGATATCTATTACC
62004704 AGCACAAAGCCTGCGG
1 AGCACAAAGCCTGCGG
62004720 ACTATAAGTC
Statistics
Matches: 91, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
39 38 0.42
40 53 0.58
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (40 bp):
AGCACAAAGCCTGCGGGATTTAACCTGGATATCTATTACC
Found at i:62006601 original size:46 final size:46
Alignment explanation
Indices: 62006548--62006716 Score: 241
Period size: 46 Copynumber: 3.7 Consensus size: 46
62006538 GTGCTCTCTA
** *
62006548 ATATGAAATACGTAAGACCATGGTTGAAAGATACCATGGTAGCCTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACCTG
*
62006594 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACTTG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACCTG
* *
62006640 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
1 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACCTG
* * *
62006686 ACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATATG-AAATGTGTAAGACCATGGTTGAAAGA
62006717 CACTATGGCA
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
45 1 0.01
46 112 0.99
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (46 bp):
ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACCTG
Found at i:62008831 original size:105 final size:101
Alignment explanation
Indices: 62008717--62008907 Score: 242
Period size: 105 Copynumber: 1.9 Consensus size: 101
62008707 ACTCGTAATT
* * *
62008717 CCATAACCCAGTTATGGT-TTTATCATCAGG-ACGTCATAGCCCATCTATGGTCTTACACTTGTA
1 CCATAACCCAGTTATGGTCTTT-TCA-CAGGAACGCCATAGCCCAGCTATAGTCTTACA-TT-TA
62008780 CACATACTGCCATAGTCCAACCATGGTCTTACGTTCACGGTG
62 -A-ATACTGCCATAGTCCAACCATGGTCTTACGTTCACGGTG
* *
62008822 CCATAACCCAGTTATGGTCTTTTCACTGGAATGCCATAGCCCAGCTATAGTCTTACATTTAAATA
1 CCATAACCCAGTTATGGTCTTTTCACAGGAACGCCATAGCCCAGCTATAGTCTTACATTTAAATA
* * *
62008887 TTGTCATGGTCCAACCATGGT
66 CTGCCATAGTCCAACCATGGT
62008908 TTTATCTGTC
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
101 21 0.28
102 1 0.01
103 2 0.03
104 5 0.07
105 44 0.58
106 3 0.04
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (101 bp):
CCATAACCCAGTTATGGTCTTTTCACAGGAACGCCATAGCCCAGCTATAGTCTTACATTTAAATA
CTGCCATAGTCCAACCATGGTCTTACGTTCACGGTG
Found at i:62009467 original size:14 final size:14
Alignment explanation
Indices: 62009448--62009476 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
62009438 CCTAAAATCA
62009448 TTTTCTATTGAATT
1 TTTTCTATTGAATT
62009462 TTTTCTATTGAATT
1 TTTTCTATTGAATT
62009476 T
1 T
62009477 ACTTAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCTATTGAATT
Found at i:62009777 original size:39 final size:39
Alignment explanation
Indices: 62009723--62009803 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
62009713 AATGGCTGTT
62009723 TTTGGCTGAAGAAATGTGAAGATTTGTCTGGAATTTCAA
1 TTTGGCTGAAGAAATGTGAAGATTTGTCTGGAATTTCAA
62009762 TTTGGCTGAAGAAATGTGAAGATTTGTCTGGAATTTCAA
1 TTTGGCTGAAGAAATGTGAAGATTTGTCTGGAATTTCAA
62009801 TTT
1 TTT
62009804 AGTCTCTTTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (39 bp):
TTTGGCTGAAGAAATGTGAAGATTTGTCTGGAATTTCAA
Found at i:62015760 original size:15 final size:15
Alignment explanation
Indices: 62015714--62015762 Score: 64
Period size: 16 Copynumber: 3.3 Consensus size: 15
62015704 TAAGCAAACC
*
62015714 TATTAATTATAAT-T
1 TATTAATTAAAATAT
*
62015728 TATTAAATAAATATAT
1 TATTAATTAAA-ATAT
62015744 TATTAATTAAAATAT
1 TATTAATTAAAATAT
62015759 TATT
1 TATT
62015763 TTGATAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
14 9 0.30
15 10 0.33
16 11 0.37
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TATTAATTAAAATAT
Found at i:62015917 original size:32 final size:32
Alignment explanation
Indices: 62015881--62015943 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
62015871 TTTTAAATTT
* *
62015881 ATAAATTGATT-ATTTGAATTTAATAACTCATG
1 ATAAATTAATTAATTT-AAATTAATAACTCATG
*
62015913 ATAAATTAATTAATTTAAATTGATAACTCAT
1 ATAAATTAATTAATTTAAATTAATAACTCAT
62015944 ACTGATTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 23 0.85
33 4 0.15
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.43
Consensus pattern (32 bp):
ATAAATTAATTAATTTAAATTAATAACTCATG
Found at i:62020186 original size:20 final size:19
Alignment explanation
Indices: 62020157--62020194 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
62020147 ATAATTGTTG
62020157 AATAGATATGTTTGCTATT
1 AATAGATATGTTTGCTATT
*
62020176 AATATGATATGTTTTCTAT
1 AATA-GATATGTTTGCTAT
62020195 ATTATTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.32, C:0.05, G:0.13, T:0.50
Consensus pattern (19 bp):
AATAGATATGTTTGCTATT
Found at i:62024875 original size:32 final size:32
Alignment explanation
Indices: 62024839--62024905 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
62024829 TAAGAATATC
62024839 AAAAGTTGAGAAATTATATTTTAAAATAATAA
1 AAAAGTTGAGAAATTATATTTTAAAATAATAA
62024871 AAAAGTTGAGAAATTATATTTTAAAATAATAA
1 AAAAGTTGAGAAATTATATTTTAAAATAATAA
62024903 AAA
1 AAA
62024906 TATATATTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (32 bp):
AAAAGTTGAGAAATTATATTTTAAAATAATAA
Found at i:62028764 original size:3 final size:3
Alignment explanation
Indices: 62028758--62028810 Score: 54
Period size: 3 Copynumber: 18.0 Consensus size: 3
62028748 CATCATCATC
* * * **
62028758 ATT ATT ATT ATT ATT ATT ATT ATT ATC CTC ATT AGC A-T ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
62028805 ATT ATT
1 ATT ATT
62028811 TTCACCATTG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
2 1 0.02
3 41 0.98
ACGTcount: A:0.32, C:0.08, G:0.02, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:62028819 original size:29 final size:27
Alignment explanation
Indices: 62028766--62028827 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 27
62028756 TCATTATTAT
62028766 TATTATTATTATTATTATCCTCATTAGC
1 TATTATTATTATTATTATCCTCATT-GC
*
62028794 ATATTATTATTATTATTTTCAC-CATTGC
1 -TATTATTATTATTATTATC-CTCATTGC
62028822 TATTAT
1 TATTAT
62028828 GTTTTAACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 6 0.19
28 2 0.06
29 22 0.71
30 1 0.03
ACGTcount: A:0.29, C:0.13, G:0.03, T:0.55
Consensus pattern (27 bp):
TATTATTATTATTATTATCCTCATTGC
Found at i:62029006 original size:21 final size:21
Alignment explanation
Indices: 62028980--62029025 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
62028970 ACTATTTGCT
*
62028980 ATTATTATTATTACTAGTTTC
1 ATTATTATTATCACTAGTTTC
* * *
62029001 ATTATTGTTATCACTATTTTT
1 ATTATTATTATCACTAGTTTC
62029022 ATTA
1 ATTA
62029026 CTACTGATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.04, T:0.59
Consensus pattern (21 bp):
ATTATTATTATCACTAGTTTC
Found at i:62029053 original size:3 final size:3
Alignment explanation
Indices: 62029047--62029106 Score: 66
Period size: 3 Copynumber: 20.0 Consensus size: 3
62029037 ATTACTCCTT
* * * * *
62029047 TTA TTA TTA ATA TTA TTG TTA CTA TTA TCA TTA TTA TTA TTA GTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
62029095 TTA TTA CTA TTA
1 TTA TTA TTA TTA
62029107 ACATTCTTTA
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:62030556 original size:18 final size:20
Alignment explanation
Indices: 62030523--62030564 Score: 70
Period size: 18 Copynumber: 2.2 Consensus size: 20
62030513 TAATTTCATG
62030523 TTATAAACACTATAAAAAAA
1 TTATAAACACTATAAAAAAA
62030543 TTATAAA-A-TATAAAAAAA
1 TTATAAACACTATAAAAAAA
62030561 TTAT
1 TTAT
62030565 TTTATTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 14 0.64
19 1 0.05
20 7 0.32
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (20 bp):
TTATAAACACTATAAAAAAA
Found at i:62032334 original size:17 final size:17
Alignment explanation
Indices: 62032300--62032334 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
62032290 TAATTGTGTG
* *
62032300 TATATATTATGTGTATA
1 TATATATTATATGCATA
62032317 TATATATTATATGCATA
1 TATATATTATATGCATA
62032334 T
1 T
62032335 CAGTGATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.09, T:0.51
Consensus pattern (17 bp):
TATATATTATATGCATA
Found at i:62037072 original size:30 final size:29
Alignment explanation
Indices: 62037030--62037087 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
62037020 AAAGATAACA
*
62037030 AGAAAACCGAATAAAGAAATCCAAGATAG
1 AGAAAACCGAATAAAGAAACCCAAGATAG
*
62037059 AGAAACCCAGAATAAAGAAACCCAAGATA
1 AGAAAACC-GAATAAAGAAACCCAAGATA
62037088 CGATACTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.59, C:0.17, G:0.16, T:0.09
Consensus pattern (29 bp):
AGAAAACCGAATAAAGAAACCCAAGATAG
Found at i:62037077 original size:15 final size:15
Alignment explanation
Indices: 62037029--62037082 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
62037019 TAAAGATAAC
*
62037029 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
62037043 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
62037058 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
62037073 AAGAAACCCA
1 AAGAAACCCA
62037083 AGATACGATA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 9 0.27
15 23 0.70
16 1 0.03
ACGTcount: A:0.59, C:0.19, G:0.15, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:62040376 original size:46 final size:46
Alignment explanation
Indices: 62040282--62040414 Score: 130
Period size: 46 Copynumber: 2.9 Consensus size: 46
62040272 ATAATCTCAC
* *
62040282 CCATAATGAACTCGGAACGCAACTCAATGAGCTCAGG-TG-TTCAAAT
1 CCATAATGAATTCGGAACGCAACTCAATGAGTTC-GGATGCTTC-AAT
*
62040328 CCATAATGAATTCGGAACACAACTCAATGAGTTCGGATGCTTGC-AT
1 CCATAATGAATTCGGAACGCAACTCAATGAGTTCGGATGCTT-CAAT
* * * *
62040374 CCATAGGTGAACTT-GAAATGCAACTCAAGGAGTTCGGATGC
1 CCATA-ATGAA-TTCGGAACGCAACTCAATGAGTTCGGATGC
62040415 CTCATAATTC
Statistics
Matches: 74, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
45 2 0.03
46 40 0.54
47 29 0.39
48 3 0.04
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (46 bp):
CCATAATGAATTCGGAACGCAACTCAATGAGTTCGGATGCTTCAAT
Found at i:62042499 original size:8 final size:10
Alignment explanation
Indices: 62042476--62042500 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
62042466 GGGATAAATA
62042476 TATATACTAT
1 TATATACTAT
62042486 TATATACTAT
1 TATATACTAT
62042496 TATAT
1 TATAT
62042501 TTTAATTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (10 bp):
TATATACTAT
Found at i:62043157 original size:20 final size:20
Alignment explanation
Indices: 62043132--62043180 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
62043122 GATTTAAAGA
*
62043132 TCCACATGGCCAAAACTATT
1 TCCACACGGCCAAAACTATT
62043152 TCCACACGGCCAAAACTATT
1 TCCACACGGCCAAAACTATT
62043172 TCCACACGG
1 TCCACACGG
62043181 GCTGAGCACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.35, G:0.12, T:0.20
Consensus pattern (20 bp):
TCCACACGGCCAAAACTATT
Found at i:62049953 original size:26 final size:26
Alignment explanation
Indices: 62049918--62049969 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
62049908 AATGTGAAAG
*
62049918 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
62049944 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
62049970 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:62050069 original size:103 final size:104
Alignment explanation
Indices: 62049841--62050207 Score: 627
Period size: 103 Copynumber: 3.6 Consensus size: 104
62049831 TGTATATAAA
** *
62049841 AGGGGTTGCTGTGTGCTGATTCCCCGATTCA-TGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
62049905 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
62049943 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCT-AGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
62050007 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
62050046 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
*
62050110 TTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
62050149 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
62050208 ATAACGGTTA
Statistics
Matches: 252, Mismatches: 8, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
102 83 0.33
103 141 0.56
104 27 0.11
105 1 0.00
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:62056974 original size:104 final size:104
Alignment explanation
Indices: 62056794--62057164 Score: 613
Period size: 104 Copynumber: 3.6 Consensus size: 104
62056784 TGTATATAAA
** * *
62056794 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
62056859 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
62056898 AGGGGTTGCTAAGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
62056963 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
62057002 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
62057066 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
62057106 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-GTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATG-GGTGGTGCTAAGTGCGTGATCCACCA
62057165 ATAACGTTAA
Statistics
Matches: 252, Mismatches: 11, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
104 227 0.90
105 25 0.10
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:62057116 original size:26 final size:26
Alignment explanation
Indices: 62057081--62057132 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
62057071 ATGTGAAAAG
*
62057081 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
62057107 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
62057133 TTCAGTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:62066667 original size:57 final size:57
Alignment explanation
Indices: 62066600--62066713 Score: 201
Period size: 57 Copynumber: 2.0 Consensus size: 57
62066590 TTTGAGTTAG
* * *
62066600 TTTTGAATTTTGAAGAAATCGACAAAGAGTTACATGGCCAGGCGACACGGTCGTGTA
1 TTTTGAATTTTGAAGAAATCGACAAAGAGTTACACGGCCAGGCGAAACGGTCATGTA
62066657 TTTTGAATTTTGAAGAAATCGACAAAGAGTTACACGGCCAGGCGAAACGGTCATGTA
1 TTTTGAATTTTGAAGAAATCGACAAAGAGTTACACGGCCAGGCGAAACGGTCATGTA
62066714 ACCCACACGG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (57 bp):
TTTTGAATTTTGAAGAAATCGACAAAGAGTTACACGGCCAGGCGAAACGGTCATGTA
Done.