Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 193 of 325
Found at i:62663345 original size:58 final size:58
Alignment explanation
Indices: 62663139--62663357 Score: 255
Period size: 58 Copynumber: 3.8 Consensus size: 58
62663129 CATTACTGGC
* * * * * * ** *
62663139 GATCTCTGTTAAATGGAAGTCTTTATGGTTATCTATATTAAATGAAAGAGTTAGTGGCA
1 GATCTCTATTAAATGGAAGCCTTTATAGTGATCTCTATTAAATGGAAGCCTTTGTGG-A
* * *
62663198 -ATCTTTGTTAAATGGAAGCCTTTATAGTGATCTCTATTAAATAGAAGCC-TTGTGGA
1 GATCTCTATTAAATGGAAGCCTTTATAGTGATCTCTATTAAATGGAAGCCTTTGTGGA
*
62663254 GATCTCTATTAAATGGAAGCCTTCT-TAGAGATCTCTATTAAATGGAAGCCTTTGTGGA
1 GATCTCTATTAAATGGAAGCCTT-TATAGTGATCTCTATTAAATGGAAGCCTTTGTGGA
* * *
62663312 GGTCTCTATTAAATGGAAGTCTTTATGGTGATCTCTATTAAATGGA
1 GATCTCTATTAAATGGAAGCCTTTATAGTGATCTCTATTAAATGGA
62663358 TGCCCTTATG
Statistics
Matches: 138, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
56 1 0.01
57 49 0.36
58 88 0.64
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.37
Consensus pattern (58 bp):
GATCTCTATTAAATGGAAGCCTTTATAGTGATCTCTATTAAATGGAAGCCTTTGTGGA
Found at i:62663384 original size:58 final size:57
Alignment explanation
Indices: 62663124--62663368 Score: 242
Period size: 58 Copynumber: 4.2 Consensus size: 57
62663114 ATTTTTGAAA
* * * * * * *
62663124 GGAAGCATTACTGGCGATCTCTGTTAAATGGAAGTCTTTATGGTTATCTATATTAAAT
1 GGAAGCCTTA-TGGAGATCTCTATTAAATGGAAGCCTTTATAGTGATCTCTATTAAAT
* ** * *
62663182 GAAAGAGTTAGTGGCA-ATCTTTGTTAAATGGAAGCCTTTATAGTGATCTCTATTAAAT
1 GGAAGCCTTA-TGG-AGATCTCTATTAAATGGAAGCCTTTATAGTGATCTCTATTAAAT
* * *
62663240 AGAAGCCTTGTGGAGATCTCTATTAAATGGAAGCCTTCT-TAGAGATCTCTATTAAAT
1 GGAAGCCTTATGGAGATCTCTATTAAATGGAAGCCTT-TATAGTGATCTCTATTAAAT
* * * *
62663297 GGAAGCCTTTGTGGAGGTCTCTATTAAATGGAAGTCTTTATGGTGATCTCTATTAAAT
1 GGAAGCC-TTATGGAGATCTCTATTAAATGGAAGCCTTTATAGTGATCTCTATTAAAT
*
62663355 GGATGCCCTTATGG
1 GGAAG-CCTTATGG
62663369 CTATCTTAAC
Statistics
Matches: 156, Mismatches: 25, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
56 1 0.01
57 47 0.30
58 106 0.68
59 2 0.01
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (57 bp):
GGAAGCCTTATGGAGATCTCTATTAAATGGAAGCCTTTATAGTGATCTCTATTAAAT
Found at i:62672275 original size:40 final size:39
Alignment explanation
Indices: 62672213--62672459 Score: 209
Period size: 40 Copynumber: 6.2 Consensus size: 39
62672203 CGGATGATAA
*
62672213 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGT-GCTATA-T
* * *
62672253 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TGCTATAT
* * * ** *
62672293 CCGGGCTAAGTCTCGAAGGCGTTTGTGCGAGCTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TGCTATAT
* *
62672333 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGCTA-TAT
* * * *
62672371 ACTGGGCTAAGTCCCGAAGGCATTT-ATGCAAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGA-GCGAG-TGCTATAT
*
62672412 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-GCTATAT
62672452 CC-GGCTAA
1 CCGGGCTAA
62672460 ACTCTGAAGG
Statistics
Matches: 176, Mismatches: 20, Indels: 23
0.80 0.09 0.11
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
39 34 0.19
40 129 0.73
41 7 0.04
42 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGCTATAT
Found at i:62672423 original size:79 final size:80
Alignment explanation
Indices: 62672254--62672436 Score: 251
Period size: 79 Copynumber: 2.3 Consensus size: 80
62672244 TGGCTAATTT
* * *
62672254 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCTCGAAGGCGTTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTAT
* * **
62672319 GCGAGCTATTATGTC
66 GCAAGCTACTATAAC
* * * *
62672334 CGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTATTATA-CTGGGCTAAGTCCCGAAGGCATTTAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTAT
*
62672398 GCAAGTTACTATAAC
66 GCAAGCTACTATAAC
62672413 CGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
62672437 AGCTAGTGGC
Statistics
Matches: 90, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
79 55 0.61
80 35 0.39
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTAT
GCAAGCTACTATAAC
Found at i:62672458 original size:79 final size:78
Alignment explanation
Indices: 62672254--62672459 Score: 234
Period size: 79 Copynumber: 2.6 Consensus size: 78
62672244 TGGCTAATTT
* * *
62672254 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCTCGAAGGCGTTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCC-GGCTAAGTCCCGAAGGCATTTAT
* * **
62672319 GCGAGCTATTATGTC
64 GCAAGCTACTATAAC
* * *
62672334 CGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTATTATA-CTGGGCTAAGTCCCGAAGGCATTTAT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATC-CGGCTAAGTCCCGAAGGCATTTAT
*
62672398 GCAAGTTACTATAAC
64 GCAAGCTACTATAAC
* * *
62672413 CGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGCTAA
62672460 ACTCTGAAGG
Statistics
Matches: 105, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
78 1 0.01
79 68 0.65
80 36 0.34
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGCTAAGTCCCGAAGGCATTTATGC
AAGCTACTATAAC
Found at i:62678245 original size:95 final size:93
Alignment explanation
Indices: 62678014--62678270 Score: 309
Period size: 95 Copynumber: 2.7 Consensus size: 93
62678004 TTTATCTATT
* * *
62678014 ATGAAAAATTTTCTTTGAGTTAGCTAATTTAACATCACTTCTTCAAACAGCTCATTGATTTAAGA
1 ATGAACAATTTTCTTTGAGTTAGCTAATTTAATATCACTACTT-AAA-AGCTCATTGATTTAAGA
* *
62678079 TCATAGCCTAAGATTATTCTATTTAATATC
64 TCGTAGCCTAAGATTATTCGATTTAATATC
* * * * * * *
62678109 ATTAACAATTTTCTATGAGTTAGTTGATTCAATAACGCTACTATAAATAGCTCATTGATTTAAGA
1 ATGAACAATTTTCTTTGAGTTAGCTAATTTAATATCACTACT-TAAA-AGCTCATTGATTTAAGA
* *
62678174 TCGTAGGCTAAGTTTATTCGATTTAATATC
64 TCGTAGCCTAAGATTATTCGATTTAATATC
**
62678204 ATGAACAATTTTCTTTGAGTTAGCTAATTTAATATCACTACTCTACAAA-CTCGCTGATTTAAGA
1 ATGAACAATTTTCTTTGAGTTAGCTAATTTAATATCACTACT-TA-AAAGCTCATTGATTTAAGA
62678268 TCG
64 TCG
62678271 CAGCTGATAT
Statistics
Matches: 135, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
94 16 0.12
95 116 0.86
96 3 0.02
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (93 bp):
ATGAACAATTTTCTTTGAGTTAGCTAATTTAATATCACTACTTAAAAGCTCATTGATTTAAGATC
GTAGCCTAAGATTATTCGATTTAATATC
Found at i:62678789 original size:131 final size:130
Alignment explanation
Indices: 62678181--62678761 Score: 518
Period size: 131 Copynumber: 4.5 Consensus size: 130
62678171 AGATCGTAGG
* * * *
62678181 CTAAGTTTATTCGATTTAATATCATGAACAATTTTCTTTGAGTTAGCTAATTTAATATCACTACT
1 CTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
* * ** * *
62678246 CTACA-AACTCGCTGATTTAAGATCGCAGCTGATATCGTTAAGGCTCGCTGATTTAATATCGCAA
66 CCAAACAACTCGCTGATTTAAGATCGCA-AAGATATCGTTAAGACTCGCTGATTTAAAATCGCAA
62678310 C
130 C
* ** * * * * * *
62678311 CTAAATTCATTTGACTTAATATCATGAACAATTTTCCTTGAGATAGTTGATTCAATATAGCTACT
1 CTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
* * * * * * * *
62678376 CCAAATAGCTCGCTAATTTAAGATCACAGTAAAAAAT-GTTAAGGCTCGCTAATTT---A--G--
66 CCAAACAACTCGCTGATTTAAGATCGCA--AAGATATCGTTAAGACTCGCTGATTTAAAATCGCA
*
62678433 -T
129 AC
* * * * *
62678434 CTAAGTTCATTCGATTTAATATTATGAACAATTTTCTTTGAGATAGCTCATTTAATATTGCTGCT
1 CTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
* * * * * * * *
62678499 CCAAACAACTTGTTGATTTAGGATCGTAGATGATATCGTTAA-AGTTTGCTGATTTAAGATCGCA
66 CCAAACAACTCGCTGATTTAAGATCGCA-AAGATATCGTTAAGA-CTCGCTGATTTAAAATCGCA
*
62678563 GC
129 AC
** *
62678565 CTAAGTTCATTCAATTTAATATCATGAGTAGTTTTCTTTGAGATAGCTAATTTAATATCGCTACT
1 CTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
* * * * * *
62678630 CCAAACAACTTGTTGATTTAATATCGCAACAGATATCATTAAGACTCGTTGATTTAAAATCACAA
66 CCAAACAACTCGCTGATTTAAGATCGCAA-AGATATCGTTAAGACTCGCTGATTTAAAATCGCAA
62678695 C
130 C
* * * * * *
62678696 CTAAGTTCATTAAATTTAATATCATGAACAATTTTCTTAGAGTTAGTTGATTCAATATCGCTACT
1 CTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
62678761 C
66 C
62678762 TAAATAGCTC
Statistics
Matches: 359, Mismatches: 78, Indels: 27
0.77 0.17 0.06
Matches are distributed among these distances:
122 4 0.01
123 88 0.25
126 2 0.01
128 2 0.01
130 58 0.16
131 201 0.56
132 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (130 bp):
CTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTGAGATAGCTAATTTAATATCGCTACT
CCAAACAACTCGCTGATTTAAGATCGCAAAGATATCGTTAAGACTCGCTGATTTAAAATCGCAAC
Found at i:62678893 original size:95 final size:95
Alignment explanation
Indices: 62678688--62678913 Score: 283
Period size: 95 Copynumber: 2.4 Consensus size: 95
62678678 TTGATTTAAA
* * *
62678688 ATCACAACCTAAGTTCATTAAATTTAATATCATGAACAATTTTCTTAGAGTTAGTTGATTCAATA
1 ATCACAATCTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTAGAGTTAGCTGATTCAATA
* * * *
62678753 TCGCTACTCTAAATAGCTCAATGATCTAAT
66 TCACTACTCTAAATAGCTCAATAATATAAG
* **
62678783 ATCGCAATCTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTTTAGTTAGCTGATTCAATA
1 ATCACAATCTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTAGAGTTAGCTGATTCAATA
* **
62678848 TCACTACTTTAAATAGCTCGCTAATATAAG
66 TCACTACTCTAAATAGCTCAATAATATAAG
* * * *
62678878 ATCAC-AGCTTTAGTTCATTCGATTTAACATCATGAA
1 ATCACAATC-TAAGTTCATTCAATTTAATATCATGAA
62678914 TGATCTCATT
Statistics
Matches: 112, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
94 2 0.02
95 110 0.98
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (95 bp):
ATCACAATCTAAGTTCATTCAATTTAATATCATGAACAATTTTCTTAGAGTTAGCTGATTCAATA
TCACTACTCTAAATAGCTCAATAATATAAG
Found at i:62680285 original size:54 final size:54
Alignment explanation
Indices: 62680222--62680329 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
62680212 TCTTCACTAC
*
62680222 TTAGAATAACATTCTCAGCTCCAGTTGTAGTTTTTTATTTCTTTCTACTGTTTG
1 TTAGAATAACATTCTCAGCTCCAGTTGTAGTTTTTTATTTCTTTCTACTATTTG
*
62680276 TTAGAATAACATTCTCAGCTCCAGTTGTAGTTTTTTGTTTCTTTCTACTATTTG
1 TTAGAATAACATTCTCAGCTCCAGTTGTAGTTTTTTATTTCTTTCTACTATTTG
62680330 CACTTTTTTC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (54 bp):
TTAGAATAACATTCTCAGCTCCAGTTGTAGTTTTTTATTTCTTTCTACTATTTG
Found at i:62682382 original size:45 final size:45
Alignment explanation
Indices: 62682296--62682382 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
62682286 CCAAAACATG
** *
62682296 TGTCACATATATCATGAACTCAGTCCACAACTCAATAAGTTCGGA
1 TGTCACATATATCATGAACTCAAACCACAACTAAATAAGTTCGGA
* *
62682341 TGTCACATATATCATGAACTCAAACCACTACTAAATGAGTTC
1 TGTCACATATATCATGAACTCAAACCACAACTAAATAAGTTC
62682383 TGATTACATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (45 bp):
TGTCACATATATCATGAACTCAAACCACAACTAAATAAGTTCGGA
Found at i:62687429 original size:15 final size:15
Alignment explanation
Indices: 62687409--62687439 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
62687399 ATTTTTACTG
62687409 TTATTTTGATTTTAA
1 TTATTTTGATTTTAA
*
62687424 TTATTTTTATTTTAA
1 TTATTTTGATTTTAA
62687439 T
1 T
62687440 AAGATTTCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
TTATTTTGATTTTAA
Found at i:62688235 original size:16 final size:18
Alignment explanation
Indices: 62688209--62688241 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
62688199 AAAACCTTGA
62688209 AAATAAACCA-TTCAAAT
1 AAATAAACCATTTCAAAT
62688226 AAAT-AACCATTTCAAA
1 AAATAAACCATTTCAAA
62688242 ATTTCAGTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.58, C:0.18, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATAAACCATTTCAAAT
Found at i:62694671 original size:17 final size:17
Alignment explanation
Indices: 62694645--62694677 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
62694635 GAGATAAGGG
62694645 GAGGAATAGTGGAGTTT
1 GAGGAATAGTGGAGTTT
*
62694662 GAGGAGTAGTGGAGTT
1 GAGGAATAGTGGAGTT
62694678 GTACCGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.45, T:0.27
Consensus pattern (17 bp):
GAGGAATAGTGGAGTTT
Found at i:62705365 original size:63 final size:63
Alignment explanation
Indices: 62705287--62705417 Score: 253
Period size: 63 Copynumber: 2.1 Consensus size: 63
62705277 TGTTTCTTGC
62705287 TTCTTACCTTGCTGCTAGTTGTTCACCTTTACTTTGCTTTTAGTTTTCTCTATTAAAAATTCA
1 TTCTTACCTTGCTGCTAGTTGTTCACCTTTACTTTGCTTTTAGTTTTCTCTATTAAAAATTCA
62705350 TTCTTACCTTGCTGCTAGTTGTTCACCTTTACTTTGCTTTTAGTTTTCTCTATTAAAAATTCA
1 TTCTTACCTTGCTGCTAGTTGTTCACCTTTACTTTGCTTTTAGTTTTCTCTATTAAAAATTCA
*
62705413 ATCTT
1 TTCTT
62705418 TTATCTTTAT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 67 1.00
ACGTcount: A:0.19, C:0.21, G:0.09, T:0.51
Consensus pattern (63 bp):
TTCTTACCTTGCTGCTAGTTGTTCACCTTTACTTTGCTTTTAGTTTTCTCTATTAAAAATTCA
Found at i:62707504 original size:22 final size:22
Alignment explanation
Indices: 62707476--62707519 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
62707466 ACTCTTCATG
*
62707476 GCATAGTATACGAAGCGCCATA
1 GCATAGTATACGAAGCACCATA
62707498 GCATAGTATACGAAGCACCATA
1 GCATAGTATACGAAGCACCATA
62707520 CTCCTATTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.23, G:0.20, T:0.18
Consensus pattern (22 bp):
GCATAGTATACGAAGCACCATA
Found at i:62713592 original size:23 final size:23
Alignment explanation
Indices: 62713561--62713629 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
62713551 CCTCAAGGGA
* *
62713561 ATTATAGAATATGCCACAAAGGT
1 ATTACAGAATATGCCACAAAGGC
* *
62713584 TTTACAGAATATGCCACAAATGC
1 ATTACAGAATATGCCACAAAGGC
* *
62713607 ATTACAAAATATGCCTCAAAGGC
1 ATTACAGAATATGCCACAAAGGC
62713630 TTAGAATAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (23 bp):
ATTACAGAATATGCCACAAAGGC
Found at i:62718196 original size:22 final size:23
Alignment explanation
Indices: 62718158--62718211 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
62718148 TACACCACAC
*
62718158 TAGAGAGTACTATAGTGC-AAAA
1 TAGAGAGCACTATAGTGCTAAAA
*
62718180 TAGAGAGCACTGA-AGTGCTAAGA
1 TAGAGAGCACT-ATAGTGCTAAAA
62718203 -AGAGAGCAC
1 TAGAGAGCAC
62718212 CGGAGTGTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 24 0.86
23 4 0.14
ACGTcount: A:0.43, C:0.13, G:0.28, T:0.17
Consensus pattern (23 bp):
TAGAGAGCACTATAGTGCTAAAA
Found at i:62719201 original size:10 final size:9
Alignment explanation
Indices: 62719188--62719239 Score: 50
Period size: 10 Copynumber: 5.2 Consensus size: 9
62719178 TGATATATAT
62719188 ACTTATATTA
1 ACTTA-ATTA
62719198 ACTTTAATTA
1 AC-TTAATTA
*
62719208 ATCTTAGTTA
1 A-CTTAATTA
62719218 ACTTAATTAA
1 ACTTAATT-A
62719228 ACTATAATTA
1 ACT-TAATTA
62719238 AC
1 AC
62719240 ATTTCTTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
9 6 0.17
10 21 0.58
11 9 0.25
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (9 bp):
ACTTAATTA
Found at i:62719238 original size:20 final size:20
Alignment explanation
Indices: 62719188--62719239 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
62719178 TGATATATAT
62719188 ACTTATATTAACTTTAATTAA
1 ACTTA-ATTAACTTTAATTAA
* *
62719209 TCTTAGTTAAC-TTAATTAA
1 ACTTAATTAACTTTAATTAA
62719228 ACTATAATTAAC
1 ACT-TAATTAAC
62719240 ATTTCTTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 10 0.38
20 12 0.46
21 4 0.15
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (20 bp):
ACTTAATTAACTTTAATTAA
Found at i:62734174 original size:50 final size:50
Alignment explanation
Indices: 62734040--62734164 Score: 180
Period size: 50 Copynumber: 2.5 Consensus size: 50
62734030 TTATAAACTG
* *
62734040 TGATCATGTTAATTATATTTTCAATTTATTATTTTTATAAGCTTTATTCA
1 TGATCATGTTAATAATATTTTCAATTTATTATTTTTATAAGATTTATTCA
* * * *
62734090 TGATCTTGTTAATAATATTTTTAATTTGTTATTTTTATAA-ATTTCATTTA
1 TGATCATGTTAATAATATTTTCAATTTATTATTTTTATAAGATTT-ATTCA
62734140 TGATCATGTTAATAATATTTTCAAT
1 TGATCATGTTAATAATATTTTCAAT
62734165 AAAAAATTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
49 3 0.05
50 63 0.95
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.56
Consensus pattern (50 bp):
TGATCATGTTAATAATATTTTCAATTTATTATTTTTATAAGATTTATTCA
Found at i:62735010 original size:16 final size:16
Alignment explanation
Indices: 62734991--62735041 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
62734981 GAAGTTGACC
62734991 AAAATAGAAATGATCT
1 AAAATAGAAATGATCT
* * *
62735007 AAAA-CGTAAGTGA-CC
1 AAAATAG-AAATGATCT
62735022 AAAATAGAAATGATCT
1 AAAATAGAAATGATCT
62735038 AAAA
1 AAAA
62735042 CGTTAGTGGC
Statistics
Matches: 26, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
15 11 0.42
16 15 0.58
ACGTcount: A:0.57, C:0.10, G:0.14, T:0.20
Consensus pattern (16 bp):
AAAATAGAAATGATCT
Found at i:62735024 original size:31 final size:31
Alignment explanation
Indices: 62734986--62735049 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
62734976 TTTAGGAAGT
62734986 TGACCAAAATAGAAATGATCTAAAACGTAAG
1 TGACCAAAATAGAAATGATCTAAAACGTAAG
*
62735017 TGACCAAAATAGAAATGATCTAAAACGTTAG
1 TGACCAAAATAGAAATGATCTAAAACGTAAG
62735048 TG
1 TG
62735050 GCAAAATTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.22
Consensus pattern (31 bp):
TGACCAAAATAGAAATGATCTAAAACGTAAG
Found at i:62735241 original size:17 final size:16
Alignment explanation
Indices: 62735196--62735244 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
62735186 ATTATTTCAA
*
62735196 TTTAATCACTAAATTT
1 TTTAATCACTAAATAT
* *
62735212 TTTAA-AATTAAATAT
1 TTTAATCACTAAATAT
62735227 TTTAATCACTCAAATAT
1 TTTAATCACT-AAATAT
62735244 T
1 T
62735245 AATCGCTATT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 12 0.46
16 7 0.27
17 7 0.27
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (16 bp):
TTTAATCACTAAATAT
Found at i:62739242 original size:40 final size:40
Alignment explanation
Indices: 62739205--62739385 Score: 183
Period size: 39 Copynumber: 4.6 Consensus size: 40
62739195 GCTACTCGTT
*
62739205 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
62739245 CAAATGCCTTCGGGACTTA-ACCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
62739284 CCAATGCCTTTGGG-CTTAGCCCGGAATTAGTATCTGGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
62739323 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
62739364 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
62739386 AGACATCATT
Statistics
Matches: 115, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
38 6 0.05
39 53 0.46
40 45 0.39
41 11 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:62747521 original size:78 final size:80
Alignment explanation
Indices: 62747380--62747559 Score: 215
Period size: 78 Copynumber: 2.3 Consensus size: 80
62747370 TACTCGTTCA
* **
62747380 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
62747445 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
* **
62747460 AATGCCTTCGGG-CTTAGCCCGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGA
* *
62747522 TATGGTCACTTAGCAC
65 TATAGTAACTTAGCAC
*
62747538 AAAGCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAGCCCG
62747560 GACATCATTC
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.57
79 22 0.26
80 12 0.14
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:62747561 original size:40 final size:40
Alignment explanation
Indices: 62747359--62747561 Score: 227
Period size: 40 Copynumber: 5.1 Consensus size: 40
62747349 CGGAATTTAA
** *
62747359 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62747399 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
62747439 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
62747478 CCGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
62747517 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
62747557 CCGGA
1 CCGGA
62747562 CATCATTCGA
Statistics
Matches: 138, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
37 2 0.01
38 21 0.15
39 21 0.15
40 83 0.60
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:62751329 original size:61 final size:58
Alignment explanation
Indices: 62751203--62751331 Score: 152
Period size: 61 Copynumber: 2.2 Consensus size: 58
62751193 TTTTAATATT
* * * *
62751203 AAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATCTATT
1 AAATTAATATAATACTTATCAACATAAATATTAAATTAAATTTAATATTAAATCAATC
*
62751261 AAATTAATATAATACTTATCTACAACATAAATATTAAATTTAATTTAATATTAAGAT-AATC
1 AAATTAATATAATACTTA--T-CAACATAAATATTAAATTAAATTTAATATTAA-ATCAATC
**
62751322 ACTTTAATAT
1 AAATTAATAT
62751332 TAAATTAATA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
58 18 0.30
60 1 0.02
61 39 0.65
62 2 0.03
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (58 bp):
AAATTAATATAATACTTATCAACATAAATATTAAATTAAATTTAATATTAAATCAATC
Found at i:62751398 original size:68 final size:71
Alignment explanation
Indices: 62751257--62751399 Score: 168
Period size: 68 Copynumber: 2.0 Consensus size: 71
62751247 ATATTAAATC
* *
62751257 TATTAAATTAATATAATACTTATCTACAACATAAATATTAAATTTAATTTAATATTAAGATAATC
1 TATTAAATTAATAAAATACTTA-CTACAACATAAATATTAAATTTAATTTAATATTAAAATAATC
***
62751322 ACTTTAA
65 AAAATAA
* * *
62751329 TATTAAATTAATAAAATA-TTA-T-CAAGATAAATATTAATTTTAATTTAATATTAAAACT-ATT
1 TATTAAATTAATAAAATACTTACTACAACATAAATATTAAATTTAATTTAATATTAAAA-TAATC
62751390 AAAATAA
65 AAAATAA
62751397 TAT
1 TAT
62751400 CATTTTTGGA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
68 40 0.65
69 2 0.03
71 3 0.05
72 17 0.27
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (71 bp):
TATTAAATTAATAAAATACTTACTACAACATAAATATTAAATTTAATTTAATATTAAAATAATCA
AAATAA
Found at i:62754506 original size:34 final size:35
Alignment explanation
Indices: 62754425--62754511 Score: 97
Period size: 35 Copynumber: 2.5 Consensus size: 35
62754415 CTCATTAATT
* *
62754425 ATTCGTCGATTTATCCGACTAGCGCAGGACACAAC
1 ATTCGTCGGTTTATCTGACTAGCGCAGGACACAAC
* ** *
62754460 TTTCGTTAGTTTATCTGACTAGTGCTAGG-CAC-AC
1 ATTCGTCGGTTTATCTGACTAGCGC-AGGACACAAC
62754494 ATTCGTCGGTTTATCTGA
1 ATTCGTCGGTTTATCTGA
62754512 TTAATGCTGG
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
34 17 0.40
35 22 0.52
36 3 0.07
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (35 bp):
ATTCGTCGGTTTATCTGACTAGCGCAGGACACAAC
Found at i:62754664 original size:143 final size:143
Alignment explanation
Indices: 62754366--62754671 Score: 369
Period size: 143 Copynumber: 2.1 Consensus size: 143
62754356 TCGATTCATT
* * *
62754366 CGACTAGCGTTGGGCGCAAATATCATTGGTTTATCCAACTAGAGCTGGGCTCATTAATTATTCGT
1 CGACTAGCGCTGGGCGCAAATATCATCGGTTTATCCAACTAGAGCTGGGCTCACTAATTATTCGT
* * * * * * *
62754431 CGATTTATCCGACTAGCGCAGGACACAACTTTCGTTAGTTTATCTGACTAGTGCTAGGCACACAT
66 CGATTTATCCGACTAGCACAGGACACAACCTCCATCAGCTTATCTAACTAGTGCTAGGCACACAT
*
62754496 TCGTCGGTTTATC
131 TCGTCAGTTTATC
* * ** * ** *
62754509 TGATTAATGCTGGGTGCAAATATTGTCGGTTTATCCAACTAGAGCTGGGCTCACTAATTATTCTT
1 CGACTAGCGCTGGGCGCAAATATCATCGGTTTATCCAACTAGAGCTGGGCTCACTAATTATTCGT
* * * * * *
62754574 CGGTTTATCCGACTAGCACTGGACGCAACCTCCATCAGCTTATCTAACTAGTGTTGGGCGCACAT
66 CGATTTATCCGACTAGCACAGGACACAACCTCCATCAGCTTATCTAACTAGTGCTAGGCACACAT
*
62754639 TTGTCAGTTTATC
131 TCGTCAGTTTATC
*
62754652 CGACTAGCGCTGGGCACAAA
1 CGACTAGCGCTGGGCGCAAA
62754672 CGCTTTCGCG
Statistics
Matches: 131, Mismatches: 32, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
143 131 1.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (143 bp):
CGACTAGCGCTGGGCGCAAATATCATCGGTTTATCCAACTAGAGCTGGGCTCACTAATTATTCGT
CGATTTATCCGACTAGCACAGGACACAACCTCCATCAGCTTATCTAACTAGTGCTAGGCACACAT
TCGTCAGTTTATC
Found at i:62758931 original size:15 final size:16
Alignment explanation
Indices: 62758911--62758945 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
62758901 TCCCACTTTC
62758911 TATTTAATATA-ATTA
1 TATTTAATATATATTA
*
62758926 TATTTATTATATATTA
1 TATTTAATATATATTA
62758942 TATT
1 TATT
62758946 ATATAATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TATTTAATATATATTA
Found at i:62769926 original size:27 final size:27
Alignment explanation
Indices: 62769889--62770093 Score: 223
Period size: 27 Copynumber: 7.6 Consensus size: 27
62769879 TAAATTGTAC
*
62769889 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62769916 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** **
62769943 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62769969 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
62769997 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62770024 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * * *
62770052 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62770079 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62770094 GACTTAATAT
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 0.84
28 24 0.16
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62769950 original size:54 final size:54
Alignment explanation
Indices: 62769890--62770093 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
62769880 AAATTGTACA
* * *
62769890 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
** ** * *
62769944 GCACTAAGTGTGCGAAATGAAAATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGACTATGTA-GCACTAAGTGTGCGATTTGACCATGTG
**
62769998 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-TTTGACCATGTG
* * *
62770053 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
62770094 GACTTAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
Found at i:62778058 original size:27 final size:27
Alignment explanation
Indices: 62778021--62778225 Score: 223
Period size: 27 Copynumber: 7.6 Consensus size: 27
62778011 TAAATTGTAC
*
62778021 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62778048 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** **
62778075 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62778101 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
62778129 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62778156 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * * *
62778184 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62778211 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62778226 GACTTAATAT
Statistics
Matches: 152, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 0.84
28 24 0.16
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62778082 original size:54 final size:54
Alignment explanation
Indices: 62778022--62778225 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
62778012 AAATTGTACA
* * *
62778022 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
** ** * *
62778076 GCACTAAGTGTGCGAAATGAAAATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGACTATGTA-GCACTAAGTGTGCGATTTGACCATGTG
**
62778130 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-TTTGACCATGTG
* * *
62778185 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
62778226 GACTTAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGACCATGTG
Found at i:62780543 original size:16 final size:15
Alignment explanation
Indices: 62780508--62780541 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
62780498 TTAATAAAGG
*
62780508 AAAATTAATATTGTA
1 AAAATGAATATTGTA
*
62780523 AAAATGAATGTTGTA
1 AAAATGAATATTGTA
62780538 AAAA
1 AAAA
62780542 ATCTTGGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.32
Consensus pattern (15 bp):
AAAATGAATATTGTA
Found at i:62782077 original size:27 final size:26
Alignment explanation
Indices: 62782017--62782087 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
62782007 ACAATATGAA
*
62782017 GAAAG-AAAATAAAATAAAACAAGCC
1 GAAAGTAAAATAAAATAAAACAAGAC
* *
62782042 GAAAATAAAATGATAAATAATA-AAGAC
1 GAAAGTAAAAT-A-AAATAAAACAAGAC
*
62782069 GAAAGTAAAACAAAATAAA
1 GAAAGTAAAATAAAATAAA
62782088 GAGGTAAAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
25 10 0.27
26 6 0.16
27 14 0.38
28 7 0.19
ACGTcount: A:0.69, C:0.07, G:0.11, T:0.13
Consensus pattern (26 bp):
GAAAGTAAAATAAAATAAAACAAGAC
Found at i:62782141 original size:25 final size:25
Alignment explanation
Indices: 62782113--62782164 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
62782103 ATAGAAAAAG
62782113 AAAAATAATAGGTAAAATAAAAAATAA
1 AAAAATAA-A-GTAAAATAAAAAATAA
62782140 AAAAATAAAGTAAAATAAAATAATA
1 AAAAATAAAGTAAAATAAAA-AATA
62782165 GAATCTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 11 0.46
26 5 0.21
27 8 0.33
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (25 bp):
AAAAATAAAGTAAAATAAAAAATAA
Found at i:62782389 original size:3 final size:3
Alignment explanation
Indices: 62782374--62782584 Score: 166
Period size: 3 Copynumber: 71.3 Consensus size: 3
62782364 AGAAAGAAAT
* * *
62782374 ATA ATA CTA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA AT- ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
62782421 ATA ATA A-A ATAA ACA ATA ATA ATA ATA GTA A-A GACA ATA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
** * * * *
62782466 AGC ATG ATA ATA ATA ATA CTA CTA ATA ATA ATA ATA ATA ATG ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * ** * *
62782514 GTA ATA ATA GTA GCA ATA ATA ATA ATA ATA GTA A-A AGA A-A ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
62782560 ATA A-A ATTA ATTA AT- TTA ATA ATA A
1 ATA ATA A-TA A-TA ATA ATA ATA ATA A
62782585 AGTAGTTAAA
Statistics
Matches: 168, Mismatches: 30, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
2 11 0.07
3 148 0.88
4 9 0.05
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:62784083 original size:44 final size:44
Alignment explanation
Indices: 62784035--62784238 Score: 133
Period size: 44 Copynumber: 4.4 Consensus size: 44
62784025 GTTTTAATTC
* * * * * *
62784035 GCTCCACTACAACTTTAGGGAGATAGGATTAGTAGCTTCAATCT
1 GCTCCACTGCAACTTCAGGGAAATAAGACTAGCAGCTTCAATCT
* * *
62784079 GCTCCTCTGCAACTTCAGGGAAATAAGACTGGCGGCTTCAATCT
1 GCTCCACTGCAACTTCAGGGAAATAAGACTAGCAGCTTCAATCT
* * * *
62784123 GCTCCATTGCAACTTCA-AGAAGATAAGATTTGTCATAATTTGTAGCTTTAATCT
1 GCTCCACTGCAACTTCAGGGAA-ATAAGA-----C-T-A---GCAGCTTCAATCT
* * * *
62784177 GTTCCACTGCAACTTCAGGGAGATAAGGCT-GACGGCTTCAATCT
1 GCTCCACTGCAACTTCAGGGAAATAAGACTAG-CAGCTTCAATCT
62784221 GCTCCACTGCAACTTCAG
1 GCTCCACTGCAACTTCAG
62784239 AAAGATAAGA
Statistics
Matches: 122, Mismatches: 25, Indels: 26
0.71 0.14 0.15
Matches are distributed among these distances:
43 4 0.03
44 82 0.67
48 1 0.01
49 2 0.02
50 1 0.01
54 30 0.25
55 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAAATAAGACTAGCAGCTTCAATCT
Found at i:62784235 original size:98 final size:98
Alignment explanation
Indices: 62784066--62784300 Score: 337
Period size: 98 Copynumber: 2.4 Consensus size: 98
62784056 GATAGGATTA
* * * * *
62784066 GTAGCTTCAATCTGCTCCTCTGCAACTTCAGGGAAATAAGACTGGCGGCTTCAATCTGCTCCATT
1 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGACTGACGGCTTCAATCTGCTCCACT
** *
62784131 GCAACTTCA-AGAAGATAAGATTTGTCATAATTT
66 GCAACTTCAGA-AAGATAAGATCCGCCATAATTT
* *
62784164 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAGATAAGGCTGACGGCTTCAATCTGCTCCACT
1 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGACTGACGGCTTCAATCTGCTCCACT
62784229 GCAACTTCAGAAAGATAAGATCCGCCATAATTT
66 GCAACTTCAGAAAGATAAGATCCGCCATAATTT
* * *
62784262 GTAGCTTTAATCTATTCCACTACAACGTCAGGGAAATAA
1 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAA
62784301 TATTCGCTGT
Statistics
Matches: 122, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
98 121 0.99
99 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (98 bp):
GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGACTGACGGCTTCAATCTGCTCCACT
GCAACTTCAGAAAGATAAGATCCGCCATAATTT
Found at i:62784245 original size:44 final size:44
Alignment explanation
Indices: 62784069--62784247 Score: 137
Period size: 44 Copynumber: 3.8 Consensus size: 44
62784059 AGGATTAGTA
* * * *
62784069 GCTTCAATCTGCTCCTCTGCAACTTCAGGGAA-ATAAGACTGGCG
1 GCTTCAATCTGCTCCACTGCAACTTCA-GAAAGATAAGGCTGACG
* * *
62784113 GCTTCAATCTGCTCCATTGCAACTTCA-AGAAGATAAGATTTGTCATAATTTG
1 GCTTCAATCTGCTCCACTGCAACTTCAGA-AAGATAAG----G-C-TGA--CG
* * **
62784165 TAGCTTTAATCTGTTCCACTGCAACTTCAGGGAGATAAGGCTGACG
1 --GCTTCAATCTGCTCCACTGCAACTTCAGAAAGATAAGGCTGACG
62784211 GCTTCAATCTGCTCCACTGCAACTTCAGAAAGATAAG
1 GCTTCAATCTGCTCCACTGCAACTTCAGAAAGATAAG
62784248 ATCCGCCATA
Statistics
Matches: 104, Mismatches: 18, Indels: 26
0.70 0.12 0.18
Matches are distributed among these distances:
43 2 0.02
44 63 0.61
46 1 0.01
48 2 0.02
49 2 0.02
50 2 0.02
52 1 0.01
54 31 0.30
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (44 bp):
GCTTCAATCTGCTCCACTGCAACTTCAGAAAGATAAGGCTGACG
Found at i:62784330 original size:98 final size:97
Alignment explanation
Indices: 62784088--62784345 Score: 320
Period size: 98 Copynumber: 2.6 Consensus size: 97
62784078 TGCTCCTCTG
*
62784088 CAACTTCAGGGAAATAAGACTGGCGGCTTCAATCTGCTCCATTGCAACTTCAAGAAGATAAGATT
1 CAACTTCAGGGAAATAAGACT-GCGGCTTCAATCTGCTCCATTGCAACTTCAAGAAGATAAGATC
* * * *
62784153 TGTCATAATTTGTAGCTTTAATCTGTTCCACTG
65 CGCCATAATTTGTAGCTTTAATCTATTCCACTA
* * *
62784186 CAACTTCAGGGAGATAAGGCTGACGGCTTCAATCTGCTCCACTGCAACTTC-AGAAAGATAAGAT
1 CAACTTCAGGGAAATAAGACTG-CGGCTTCAATCTGCTCCATTGCAACTTCAAG-AAGATAAGAT
62784250 CCGCCATAATTTGTAGCTTTAATCTATTCCACTA
64 CCGCCATAATTTGTAGCTTTAATCTATTCCACTA
* * * * * * * * *
62784284 CAACGTCAGGGAAATAATATTCGCTGTTTCAGTCTGTTCCGTTGCAACTTCAAGGAGATAAG
1 CAACTTCAGGGAAATAAGACT-GCGGCTTCAATCTGCTCCATTGCAACTTCAAGAAGATAAG
62784346 GCTAGTGGCT
Statistics
Matches: 136, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
97 3 0.02
98 130 0.96
99 3 0.02
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (97 bp):
CAACTTCAGGGAAATAAGACTGCGGCTTCAATCTGCTCCATTGCAACTTCAAGAAGATAAGATCC
GCCATAATTTGTAGCTTTAATCTATTCCACTA
Found at i:62784533 original size:143 final size:143
Alignment explanation
Indices: 62784174--62784959 Score: 1058
Period size: 143 Copynumber: 5.5 Consensus size: 143
62784164 GTAGCTTTAA
* * **
62784174 TCTGTTCCACTGCAACTTCAGGGAGATAAGGCTGACGGCTTCAATCTGCTCCACTGCAACTTCAG
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
* * * *
62784239 AAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTATTCCACTACAACGTCAGGGAAATAATAT
66 AAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGAT
62784304 TCGCTGT-TTCAG
131 TCGCTGTCTTCAG
* * * *
62784316 TCTGTTCCGTTGCAACTTCAAGGAGATAAGGCTAGTGGCTTCAAAT-TGCTCCACTGCAACTTCA
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC-AATCTGCTCCACTGCAACTTCA
*
62784380 GGAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGA
65 GAAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGA
*
62784445 TTCGCTGTTTTCAG
130 TTCGCTGTCTTCAG
* * * * * *
62784459 TCTACTCCGCTGTAACTTTAGGGAGATAAGGCTGGTGGCTTCAATTTGCTCAATTGCAACTTCAG
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
* * * *
62784524 GAAGATAAGATTTGCCATAATTTGTAGCTTTAATCTATTCCATTGCAACGTCAGGGAAATAAGAT
66 AAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGAT
*
62784589 TCGCTGTCTTCAA
131 TCGCTGTCTTCAG
* ** * *
62784602 CCTGCTCTACTGCAACTTCAGGGAGATAAGGCTGATGGCTTCAATCTGCTCCACTACAACTTCAG
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
* * * **
62784667 AAAGATAAAAATT-TCCATAATTTGTAGTTTTAATCTGTTCCACTGCAATATCAGGGAAATAAGA
66 AAAGAT-AAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGA
* *
62784731 TTCGTTGTCTTCAA
130 TTCGCTGTCTTCAG
* * * * * *
62784745 TTTGCTCCGCTACAAATTTAGGGAGATAAGGCTGGTGGCTTTAATATGCTCCACTGCAACTTCAG
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
*
62784810 AAAGATAAGA-TCGGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCAGGGAAATAAGA
66 AAAGATAAGATTC-GCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGA
*
62784874 TTTGCTGTCTTCAG
130 TTCGCTGTCTTCAG
* * * * *
62784888 TCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGGCTTTAATCTGCTCTACTACAACTTCAG
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCA-
62784953 GAAAGAT
65 GAAAGAT
62784960 CCGCCATCTT
Statistics
Matches: 563, Mismatches: 74, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
141 1 0.00
142 128 0.23
143 422 0.75
144 12 0.02
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (143 bp):
TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAG
AAAGATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGAT
TCGCTGTCTTCAG
Found at i:62784631 original size:45 final size:44
Alignment explanation
Indices: 62784562--62784666 Score: 111
Period size: 44 Copynumber: 2.4 Consensus size: 44
62784552 TTTAATCTAT
* * * * *
62784562 TCCATTGCAACGTCAGGGAAATAAGATTCGCTGTCTTCAACCTGC
1 TCCACTGCAACTTCAGGGAAATAAGACT-GATGGCTTCAACCTGC
* * * *
62784607 TCTACTGCAACTTCAGGGAGATAAGGCTGATGGCTTCAATCTGC
1 TCCACTGCAACTTCAGGGAAATAAGACTGATGGCTTCAACCTGC
*
62784651 TCCACTACAACTTCAG
1 TCCACTGCAACTTCAG
62784667 AAAGATAAAA
Statistics
Matches: 49, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
44 27 0.55
45 22 0.45
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAAATAAGACTGATGGCTTCAACCTGC
Found at i:62784662 original size:44 final size:44
Alignment explanation
Indices: 62784596--62784953 Score: 124
Period size: 44 Copynumber: 7.6 Consensus size: 44
62784586 GATTCGCTGT
* * *
62784596 CTTCAACCTGCTCTACTGCAACTTCAGGGAGATAAGGCTGATGG
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGGCTGATGG
** ** *
62784640 CTTCAATCTGCTCCACTACAACTTCAGAAAGATAAAAATTTCCATAATTTGTAG
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGAT---AA--GGC-TGA--TG--G
* * * * * ** * *
62784694 TTTTAATCTGTTCCACTGCAA-TATCAGGGAAATAAGATTCGTTGT
1 CTTCAATCTGCTCCACTACAACT-TCAGGGAGATAAGGCT-GATGG
* * * * *
62784739 CTTCAATTTGCTCCGCTACAAATTTAGGGAGATAAGGCTGGTGG
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGGCTGATGG
* * * ** *
62784783 CTTTAATATGCTCCACTGCAACTTCAGAAAGATAAGATCGGCCATAATTTGTAG
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGAT-A-A--GG-C-TGA--TG--G
* * * * ** * *
62784837 CTTTAATCTGTTCCACTACAACGTCAGGGAAATAAGATTTGCTGT
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAG-GCTGATGG
* * * *
62784882 CTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGGCTGGTGG
1 CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGGCTGATGG
* *
62784926 CTTTAATCTGCTCTACTACAACTTCAGG
1 CTTCAATCTGCTCCACTACAACTTCAGG
62784954 AAAGATCCGC
Statistics
Matches: 219, Mismatches: 71, Indels: 48
0.65 0.21 0.14
Matches are distributed among these distances:
44 83 0.38
45 57 0.26
46 2 0.01
47 6 0.03
48 3 0.01
49 3 0.01
50 4 0.02
51 2 0.01
52 5 0.02
53 2 0.01
54 52 0.24
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGGCTGATGG
Found at i:62785087 original size:21 final size:21
Alignment explanation
Indices: 62785061--62785102 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
62785051 ATAGCTTTAA
* *
62785061 TCTGCTCTATTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAG
62785082 TCTGCTCCACTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAG
62785103 GGAGATAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.33, G:0.14, T:0.33
Consensus pattern (21 bp):
TCTGCTCCACTGCAACTTCAG
Found at i:62785134 original size:65 final size:65
Alignment explanation
Indices: 62785018--62785145 Score: 170
Period size: 65 Copynumber: 2.0 Consensus size: 65
62785008 CATCTTTAAC
* * * *
62785018 CTGCTCAACTGCAACTTCAGGGAGATAAGGCTTATAGCTTTAATCTGCTCTATTGCAACTTCAGT
1 CTGCTCAACTGCAACTTCAGGGAGATAAGACTTATAGATTTAATCTACTCTACTGCAACTTCAGT
* *
62785083 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA-ATTTCAA-CATACTCTACTGCAACTTCA
1 CTGCTCAACTGCAACTTCAGGGAGATAAGACTTATAGATTT-AATC-TACTCTACTGCAACTTCA
62785146 AAGAGATAAG
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
64 4 0.07
65 51 0.93
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (65 bp):
CTGCTCAACTGCAACTTCAGGGAGATAAGACTTATAGATTTAATCTACTCTACTGCAACTTCAGT
Found at i:62785269 original size:89 final size:89
Alignment explanation
Indices: 62785176--62785380 Score: 218
Period size: 89 Copynumber: 2.3 Consensus size: 89
62785166 GTAATATGCT
* * *
62785176 CCATTGTAACTTCAGGGAGATAAGATTCGCCAT-TTTCGGTCTGCTCCATTGCAACCTCAAGGAG
1 CCATTGTAACTTCAGGGAGATAAGATTCGCCATCTTT-GATCTACTCCACTGCAACCTCAAGGAG
**
62785240 ATAAGA-CTTGTAACTTCAACCTGCC
65 ATAAGATC-TACAACTTCAACCTGCC
* * * * ** * *
62785265 CCATTGCAACTTCAGGGGGATAAGGTTGGTTATCTTTGATCTACTCCGCTGCAACTTCAAGGAGA
1 CCATTGTAACTTCAGGGAGATAAGATTCGCCATCTTTGATCTACTCCACTGCAACCTCAAGGAGA
* *
62785330 TAAGATCTACAACTTCAATCTGCT
66 TAAGATCTACAACTTCAACCTGCC
*
62785354 CCACTGCT-ACTTCAGGGAGATAAGATT
1 CCATTG-TAACTTCAGGGAGATAAGATT
62785381 TATGGATTCA
Statistics
Matches: 94, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
89 90 0.96
90 4 0.04
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (89 bp):
CCATTGTAACTTCAGGGAGATAAGATTCGCCATCTTTGATCTACTCCACTGCAACCTCAAGGAGA
TAAGATCTACAACTTCAACCTGCC
Found at i:62788023 original size:39 final size:39
Alignment explanation
Indices: 62787949--62788202 Score: 350
Period size: 39 Copynumber: 6.5 Consensus size: 39
62787939 GATTTTAACT
* * * *
62787949 GGGCTAAGACCCGTAGGCCTT-GTG-TGAGATTTATATCC
1 GGGCTAAGTCCCGAAGGCATTCGTGCTGATA-TTATATCC
* *
62787987 GAGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATTC
1 GGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCC
* *
62788026 GGGTTAAGTCCCGAAGGCATCCGTGCTGATATTATATCC
1 GGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCC
* *
62788065 GGGTTAAGTCCCGAAGGCATTCGTGCTGGTATTATATCC
1 GGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCC
62788104 GGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCC
1 GGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCC
* *
62788143 GGGCTAAGTCCCGAAGGCATTCTTGCTGATGTTATATCC
1 GGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCC
* **
62788182 AGGCTAAGTTTCGAAGGCATT
1 GGGCTAAGTCCCGAAGGCATT
62788203 TGGGTTGGAA
Statistics
Matches: 195, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
38 17 0.09
39 174 0.89
40 4 0.02
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTCGTGCTGATATTATATCC
Found at i:62796709 original size:19 final size:19
Alignment explanation
Indices: 62796685--62796722 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
62796675 TGATACAAGG
*
62796685 ATCTTTCTAACTCTGACAC
1 ATCTTTCTAACTCTAACAC
62796704 ATCTTTCTAACTCTAACAC
1 ATCTTTCTAACTCTAACAC
62796723 CCGAGTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.32, G:0.03, T:0.37
Consensus pattern (19 bp):
ATCTTTCTAACTCTAACAC
Found at i:62798399 original size:15 final size:15
Alignment explanation
Indices: 62798379--62798412 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
62798369 ACAAGCCGAA
62798379 AATAAA-ATGACAAAT
1 AATAAAGATGA-AAAT
62798394 AATAAAGATGAAAAT
1 AATAAAGATGAAAAT
62798409 AATA
1 AATA
62798413 CAAAATAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.68, C:0.03, G:0.09, T:0.21
Consensus pattern (15 bp):
AATAAAGATGAAAAT
Found at i:62798478 original size:14 final size:14
Alignment explanation
Indices: 62798459--62798511 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
62798449 AAATAATAGG
62798459 TAAAAAAACTAAAAA
1 TAAAAAAA-TAAAAA
62798474 TAAAAAAATAAAAA
1 TAAAAAAATAAAAA
62798488 -AATAAAGAAT-AAAA
1 TAA-AAA-AATAAAAA
*
62798502 TAAAATAATA
1 TAAAAAAATA
62798512 GAATCTAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
13 5 0.15
14 15 0.45
15 13 0.39
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (14 bp):
TAAAAAAATAAAAA
Found at i:62798511 original size:8 final size:8
Alignment explanation
Indices: 62798469--62798493 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
62798459 TAAAAAAACT
62798469 AAAAATAA
1 AAAAATAA
62798477 AAAAATAA
1 AAAAATAA
62798485 AAAAATAA
1 AAAAATAA
62798493 A
1 A
62798494 GAATAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:62798592 original size:24 final size:25
Alignment explanation
Indices: 62798565--62798620 Score: 66
Period size: 24 Copynumber: 2.3 Consensus size: 25
62798555 TAATTTTAAG
62798565 AATAATAATT-ATA-ACAATAATG-A
1 AATAATAATTAATATA-AATAATGTA
62798588 TAATAAT-ATTAATATAAATAATGTA
1 -AATAATAATTAATATAAATAATGTA
62798613 AATAATAA
1 AATAATAA
62798621 GTAAGTGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
23 3 0.11
24 22 0.79
25 3 0.11
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.34
Consensus pattern (25 bp):
AATAATAATTAATATAAATAATGTA
Found at i:62799470 original size:47 final size:46
Alignment explanation
Indices: 62799363--62799526 Score: 161
Period size: 46 Copynumber: 3.5 Consensus size: 46
62799353 ATTGTGTGCT
* ** **
62799363 AGTGTATGACATGTCTGGGTTATGCATCAGCCA-CATTACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CATCAAAACGAGAGCC
* * *
62799409 AGTGCAAGACCATGTCTGGGACATGGCATCAGCATTAAAACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATCAAAACGAGAGCC
* * * * *
62799457 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATCAAAACG-AGAGCC
62799503 AGTGTAAGACATGTCTGGGACATG
1 AGTGTAAGACATGTCTGGGACATG
62799527 TATCGGGGAC
Statistics
Matches: 98, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
46 45 0.46
47 29 0.30
48 24 0.24
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCATCAAAACGAGAGCC
Found at i:62799537 original size:13 final size:13
Alignment explanation
Indices: 62799519--62799545 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
62799509 AGACATGTCT
62799519 GGGACATGTATCG
1 GGGACATGTATCG
62799532 GGGACATGTATCG
1 GGGACATGTATCG
62799545 G
1 G
62799546 CTACAAGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.41, T:0.22
Consensus pattern (13 bp):
GGGACATGTATCG
Found at i:62799555 original size:59 final size:58
Alignment explanation
Indices: 62799473--62799583 Score: 145
Period size: 59 Copynumber: 1.9 Consensus size: 58
62799463 AGACATGTCT
*
62799473 GGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGA-CATGTCTGGGACATGTATCG
1 GGGACATGCATCGGCCTCAAGATGT--GCCAGTGTAAGACCATGTCTGGGACATGTATCG
* * *
62799532 GGGACATGTATCGG-CTACAAGATGTGTCAGTGTAAGACCATGTTTGGGACAT
1 GGGACATGCATCGGCCT-CAAGATGTGCCAGTGTAAGACCATGTCTGGGACAT
62799584 AGCATCGACT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
57 11 0.24
58 15 0.33
59 20 0.43
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (58 bp):
GGGACATGCATCGGCCTCAAGATGTGCCAGTGTAAGACCATGTCTGGGACATGTATCG
Found at i:62803549 original size:28 final size:28
Alignment explanation
Indices: 62803500--62803578 Score: 88
Period size: 28 Copynumber: 2.8 Consensus size: 28
62803490 ATGTACCATA
* * *
62803500 CTCGATACCTTGCACGCTAAGT-TCTATT
1 CTCGATACTTTGCACACTAAGTGTC-ATC
* **
62803528 CTGGATGTTTTGCACACTAAGTGTCATC
1 CTCGATACTTTGCACACTAAGTGTCATC
62803556 CTCGATACTTTGCACACTAAGTG
1 CTCGATACTTTGCACACTAAGTG
62803579 CCATTTATAT
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 39 0.95
29 2 0.05
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (28 bp):
CTCGATACTTTGCACACTAAGTGTCATC
Found at i:62807786 original size:21 final size:22
Alignment explanation
Indices: 62807760--62807800 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
62807750 AAGAAAGAAA
62807760 AAGAAAA-GACTA-ATCCTAAAG
1 AAGAAAACGAC-ACATCCTAAAG
62807781 AAGAAAACGACACATCCTAA
1 AAGAAAACGACACATCCTAA
62807801 GTCCCTAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.56, C:0.20, G:0.12, T:0.12
Consensus pattern (22 bp):
AAGAAAACGACACATCCTAAAG
Found at i:62814194 original size:46 final size:47
Alignment explanation
Indices: 62814067--62814195 Score: 133
Period size: 45 Copynumber: 2.8 Consensus size: 47
62814057 CCACATTATG
* * *
62814067 AGAGCCAGTGTAAGACCATGCCTGGGACATGGCATCGGTATTGAAACT
1 AGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGTA-TCAAACT
* *
62814115 AGAGTTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTA-CAAGA-T
1 AGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TATCAA-ACT
* *
62814160 -GTGTCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCG
62814196 ACATGGATAT
Statistics
Matches: 68, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
44 12 0.18
45 15 0.22
46 14 0.21
47 14 0.21
48 13 0.19
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
AGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATCAAACT
Found at i:62814224 original size:50 final size:46
Alignment explanation
Indices: 62814162--62814291 Score: 143
Period size: 50 Copynumber: 2.7 Consensus size: 46
62814152 TACAAGATGT
*
62814162 GTCAGTGTAAGACCATGTCTAGGACATGGCATCGACATGGATATGTTAAA
1 GTCAGTGTAAGACCATGTCT-GGACATGGCATCGAC-TGGACATG-T-AA
* * * *
62814212 GTCAATGTAAGACCATGTCTGAGACATGGCATTGACTTGACATGTGA
1 GTCAGTGTAAGACCATGTCTG-GACATGGCATCGACTGGACATGTAA
* *
62814259 GCCAGTGTAAAACCATGTCTGGGACATGGCATC
1 GTCAGTGTAAGACCATGTCT-GGACATGGCATC
62814292 AGAATTATAC
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
47 28 0.41
48 2 0.03
49 7 0.10
50 32 0.46
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (46 bp):
GTCAGTGTAAGACCATGTCTGGACATGGCATCGACTGGACATGTAA
Found at i:62821244 original size:21 final size:20
Alignment explanation
Indices: 62821200--62821245 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
62821190 TTGGTTAGCC
* * *
62821200 CTACCGATATCTTTAGAGTT
1 CTACCAATATCTTGAGACTT
62821220 CTACCAATATCTTGAGGACTT
1 CTACCAATATCTTGA-GACTT
62821241 CTACC
1 CTACC
62821246 GAAATAAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (20 bp):
CTACCAATATCTTGAGACTT
Found at i:62824708 original size:20 final size:20
Alignment explanation
Indices: 62824683--62824724 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
62824673 TACACCGATC
62824683 ATTCAAACCTGAAGTATGTT
1 ATTCAAACCTGAAGTATGTT
62824703 ATTCAAACCTGAAGTATGTT
1 ATTCAAACCTGAAGTATGTT
62824723 AT
1 AT
62824725 GGAAAAGGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (20 bp):
ATTCAAACCTGAAGTATGTT
Found at i:62828959 original size:57 final size:57
Alignment explanation
Indices: 62828892--62829031 Score: 163
Period size: 57 Copynumber: 2.5 Consensus size: 57
62828882 TGTTACAATT
* * * * * *
62828892 AGGATATAGCCTGGACTGGTAATCCTAATTGAGCTTTTCTAAGTATATGTTATAGAA
1 AGGATTTAGCCTGGACTAGTAATCCTAATTAAGCTCTTCTAAGCATATGTTAGAGAA
* * * * * *
62828949 AGGATTTAGCCTAGACTAGTAATCCTAATTAAGCTCTTGTGAGCATATTTTGGAGAT
1 AGGATTTAGCCTGGACTAGTAATCCTAATTAAGCTCTTCTAAGCATATGTTAGAGAA
*
62829006 AGGATTTAGCCTGAACTAGTAATCCT
1 AGGATTTAGCCTGGACTAGTAATCCT
62829032 GTCATATGAT
Statistics
Matches: 69, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
57 69 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (57 bp):
AGGATTTAGCCTGGACTAGTAATCCTAATTAAGCTCTTCTAAGCATATGTTAGAGAA
Found at i:62829279 original size:22 final size:22
Alignment explanation
Indices: 62829227--62829281 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
62829217 TGCTTGAAGT
* * *
62829227 ACATGAAAATGATGATATATGA
1 ACATGGAAATTATGATATACGA
*
62829249 A-ATACGAAATTATGATATACGA
1 ACAT-GGAAATTATGATATACGA
62829271 ACATGGAAATT
1 ACATGGAAATT
62829282 TGTTTGATGA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
21 2 0.08
22 22 0.85
23 2 0.08
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.27
Consensus pattern (22 bp):
ACATGGAAATTATGATATACGA
Found at i:62832674 original size:46 final size:46
Alignment explanation
Indices: 62832405--62832678 Score: 379
Period size: 46 Copynumber: 6.0 Consensus size: 46
62832395 TTTGACATGA
* * * * *
62832405 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCAGGT
* * * *
62832451 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
* *** *
62832497 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
62832543 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
62832589 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
*
62832635 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAG
62832679 AGAGCACACT
Statistics
Matches: 211, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 207 0.98
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATATCAGGT
Found at i:62834074 original size:175 final size:175
Alignment explanation
Indices: 62833783--62834312 Score: 1006
Period size: 175 Copynumber: 3.0 Consensus size: 175
62833773 ATATTCAAGT
62833783 TGTCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGATC
1 TGTCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGATC
*
62833848 CGCTAATTTTCCCTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTCAGAATTTTTGGTT
66 CTCTAATTTTCCCTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTCAGAATTTTTGGTT
62833913 TAGCCAATAAGTATAGTTTATTCTTTAAAGTTACCCCTGTTCTGC
131 TAGCCAATAAGTATAGTTTATTCTTTAAAGTTACCCCTGTTCTGC
62833958 TGTCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGATC
1 TGTCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGATC
62834023 CTCTAATTTTCCCTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTCAGAATTTTTGGTT
66 CTCTAATTTTCCCTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTCAGAATTTTTGGTT
*
62834088 TAGCCAATAAGTATAGTTTATTCTTTAAAGTTACCCCTGTTCTAC
131 TAGCCAATAAGTATAGTTTATTCTTTAAAGTTACCCCTGTTCTGC
*
62834133 TATCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGATC
1 TGTCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGATC
* *
62834198 TTCTAATTTTCCCTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTCAAAATTTTTGGTT
66 CTCTAATTTTCCCTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTCAGAATTTTTGGTT
*
62834263 TAGCCAATAAGTACAGTTTATTCTTTAAAGTTACCCCTGTTCTGC
131 TAGCCAATAAGTATAGTTTATTCTTTAAAGTTACCCCTGTTCTGC
62834308 TGTCT
1 TGTCT
62834313 GACAATTCTA
Statistics
Matches: 347, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
175 347 1.00
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (175 bp):
TGTCTATCTTCATCATAGTCACTAAATTATTTATATCTGGAGCTATAGAACTCAAAATTAAGATC
CTCTAATTTTCCCTGAAACTAAACTCATATATCTTCTTACCATAAAATTTTCAGAATTTTTGGTT
TAGCCAATAAGTATAGTTTATTCTTTAAAGTTACCCCTGTTCTGC
Found at i:62836803 original size:48 final size:47
Alignment explanation
Indices: 62836751--62837052 Score: 329
Period size: 48 Copynumber: 6.3 Consensus size: 47
62836741 CATTTTCCAA
*
62836751 ACATGGTCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCACATATC-AGGCCGATGCCATGTCCCAG
** * * *
62836799 ACATGGTCTTACACTAGCTCTTATCTCAATGCCGATGCCATGTCTCAG
1 ACATGGTCTTACACTAGCTCACATATC-AGGCCGATGCCATGTCCCAG
* * * *
62836847 ACATGGTCTTACACTAGCTCTCCTAATCTGGTCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCACAT-ATCAGGCCGATGCCATGTCCCAG
* * * * *
62836895 ACATGGTTTTACACTAGCGCACGTATCAATGCCGATGCCATGTCCTAG
1 ACATGGTCTTACACTAGCTCACATATC-AGGCCGATGCCATGTCCCAG
* *
62836943 ACATGGTCTTACACTAGCATTCACA-A-CATCGTCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGC--TCACATATCA-GGCCGATGCCATGTCCCAG
* * * *
62836991 ACATGGTCTTACACTAGCTCTCATATCGTGGCTGATGCCATGTCTCAG
1 ACATGGTCTTACACTAGCTCACATATC-AGGCCGATGCCATGTCCCAG
62837039 ACATGGTCTTACAC
1 ACATGGTCTTACAC
62837053 GGGAACAAAT
Statistics
Matches: 213, Mismatches: 33, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
46 4 0.02
47 5 0.02
48 198 0.93
49 3 0.01
50 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
ACATGGTCTTACACTAGCTCACATATCAGGCCGATGCCATGTCCCAG
Found at i:62836899 original size:96 final size:97
Alignment explanation
Indices: 62836751--62837052 Score: 386
Period size: 96 Copynumber: 3.1 Consensus size: 97
62836741 CATTTTCCAA
* * * *
62836751 ACATGGTCTTACACTAGCTCACAT-GTCGA-GGCCGATGCCATGTCCCAGACATGGTCTTACACT
1 ACATGGTCTTACACTAGCTCTCCTAATC-ATGGTCGATGCCATGTCCCAGACATGGTCTTACACT
* *
62836814 AGCTCTTATCTCAATGCCGATGCCATGTCTCAG
65 AGCTCTCATATCAATGCCGATGCCATGTCTCAG
*
62836847 ACATGGTCTTACACTAGCTCTCCTAATC-TGGTCGATGCCATGTCCCAGACATGGTTTTACACTA
1 ACATGGTCTTACACTAGCTCTCCTAATCATGGTCGATGCCATGTCCCAGACATGGTCTTACACTA
* * *
62836911 GCGCACGTATCAATGCCGATGCCATGTC-CTAG
66 GCTCTCATATCAATGCCGATGCCATGTCTC-AG
*
62836943 ACATGGTCTTACACTAGCAT-TCAC-AA-CATCGTCGATGCCATGTCCCAGACATGGTCTTACAC
1 ACATGGTCTTACACTAGC-TCTC-CTAATCATGGTCGATGCCATGTCCCAGACATGGTCTTACAC
* *
62837005 TAGCTCTCATATC-GTGGCTGATGCCATGTCTCAG
64 TAGCTCTCATATCAAT-GCCGATGCCATGTCTCAG
62837039 ACATGGTCTTACAC
1 ACATGGTCTTACAC
62837053 GGGAACAAAT
Statistics
Matches: 181, Mismatches: 17, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
95 3 0.02
96 173 0.96
97 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (97 bp):
ACATGGTCTTACACTAGCTCTCCTAATCATGGTCGATGCCATGTCCCAGACATGGTCTTACACTA
GCTCTCATATCAATGCCGATGCCATGTCTCAG
Found at i:62836993 original size:144 final size:144
Alignment explanation
Indices: 62836733--62837052 Score: 407
Period size: 144 Copynumber: 2.2 Consensus size: 144
62836723 AGGGTGAATT
* * * * * * *
62836733 GTCGATGTCATTTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCCA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCCA
* * *
62836798 GACATGGTCTTACACTAGCTCTTATCTCAATGCCGATGCCATGTCTCAGACATGGTCTTACACTA
66 GACATGGTCTTACACTAGCTCTCATCACAATGCCGATGCCATGTCCCAGACATGGTCTTACACTA
*
62836863 GCTCTCCTAATC-TG
131 GCTCTCAT-ATCGTG
* * * *
62836877 GTCGATGCCATGTCCCAGACATGGTTTTACACTAGCGCACGTATCAATGCCGATGCCATGTCCTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCCA
*
62836942 GACATGGTCTTACACTAGCAT-TCA-CA-ACATCGTCGATGCCATGTCCCAGACATGGTCTTACA
66 GACATGGTCTTACACTAGC-TCTCATCACA-AT-GCCGATGCCATGTCCCAGACATGGTCTTACA
62837004 CTAGCTCTCATATCGTG
128 CTAGCTCTCATATCGTG
*
62837021 G-CTGATGCCATGTCTCAGACATGGTCTTACAC
1 GTC-GATGCCATGTCCCAGACATGGTCTTACAC
62837053 GGGAACAAAT
Statistics
Matches: 153, Mismatches: 18, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
142 1 0.01
143 7 0.05
144 144 0.94
145 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (144 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAAGGCCGATGCCATGTCCCA
GACATGGTCTTACACTAGCTCTCATCACAATGCCGATGCCATGTCCCAGACATGGTCTTACACTA
GCTCTCATATCGTG
Found at i:62841326 original size:30 final size:30
Alignment explanation
Indices: 62841285--62841346 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
62841275 TTTTCGAAGC
*
62841285 TAGGGGTAAAATGGTCACTTTGCAAAATTA
1 TAGGGGAAAAATGGTCACTTTGCAAAATTA
* **
62841315 TAGGGGAAAAATGGTCATTTTGCCCAATTA
1 TAGGGGAAAAATGGTCACTTTGCAAAATTA
62841345 TA
1 TA
62841347 AATTGTTGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAATGGTCACTTTGCAAAATTA
Found at i:62841825 original size:46 final size:45
Alignment explanation
Indices: 62841675--62841883 Score: 167
Period size: 46 Copynumber: 4.5 Consensus size: 45
62841665 TTTGTGTGCT
* * *
62841675 AGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGA-G-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCA--A-GACGTAGTC
* **
62841721 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC-TAGATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGACGTAG-TC
* * * **
62841768 TAGCGTGAGACATGTCTAGGACATGCATCGGCCTCGTGACGTAAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGT-AGTC
* *
62841815 AGTGTAAGACATGTTTGGGACATGCATCGG-CTACAAGATGT-GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CAAGACGTAGTC
*
62841859 AGTGTAAGACCATGTCTTGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
62841884 GCATATACTT
Statistics
Matches: 132, Mismatches: 21, Indels: 21
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.09
45 17 0.13
46 56 0.42
47 30 0.23
48 17 0.13
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGTAGTC
Found at i:62845900 original size:20 final size:21
Alignment explanation
Indices: 62845875--62845913 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62845865 TCAAGCTGAC
62845875 AAGGGC-ACACCCCCGTGTGG
1 AAGGGCAACACCCCCGTGTGG
*
62845895 AAGGGCAACACGCCCGTGT
1 AAGGGCAACACCCCCGTGT
62845914 ACCTATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.23, C:0.33, G:0.33, T:0.10
Consensus pattern (21 bp):
AAGGGCAACACCCCCGTGTGG
Found at i:62847485 original size:48 final size:48
Alignment explanation
Indices: 62847108--62847475 Score: 350
Period size: 48 Copynumber: 7.7 Consensus size: 48
62847098 GGTGAATTGT
* * * * * *
62847108 CGATGCCATGTTCCAAACATGTTCTTACACTGGCTCACATGTCGA-GGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-ATGGC
* * * *
62847156 CGATGCCATGTCCCTGACATGGTCTTACACTAGCTCTCATCTCAAT-GT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATC-ATGGC
* * * *
62847204 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTCTCCTAACGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGC
* * *
62847252 CGATG-CAGGTCCCAGACATGGTCTTACACTAG-TGCACATATCAAT-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CTCATATC-ATGGC
* * * * * * * *
62847299 TGATACCATATCCTAGACAAGGTCTTACACTGGCTCTCACAACATCGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGC
* * * * *
62847347 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACAACATCGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGC
* * * *
62847395 CGATGTCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGC
*
62847443 CAATGCCATGTCCCAGACATGGTCTTACACTGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGG
62847476 AACGCATATC
Statistics
Matches: 264, Mismatches: 49, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
46 1 0.00
47 37 0.14
48 225 0.85
49 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCATGGC
Found at i:62852330 original size:8 final size:8
Alignment explanation
Indices: 62852317--62852344 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
62852307 TATGTTTAGC
62852317 ATATTATT
1 ATATTATT
62852325 ATATTATT
1 ATATTATT
62852333 ATATTATT
1 ATATTATT
62852341 ATAT
1 ATAT
62852345 AATAAAGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
ATATTATT
Found at i:62853296 original size:21 final size:19
Alignment explanation
Indices: 62853260--62853298 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
62853250 AAAAATGTGA
*
62853260 TTATTGTGAAATTGAATGT
1 TTATTGTGAAAGTGAATGT
62853279 TTATTAGTGATAAGTGAATG
1 TTATT-GTGA-AAGTGAATG
62853299 GAATTATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 4 0.24
21 8 0.47
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.44
Consensus pattern (19 bp):
TTATTGTGAAAGTGAATGT
Found at i:62853349 original size:16 final size:16
Alignment explanation
Indices: 62853328--62853365 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
62853318 ATATATAGTT
62853328 AATTAATT-AAAATATG
1 AATTAATTGAAAA-ATG
*
62853344 AATTAATTGAAAAGTG
1 AATTAATTGAAAAATG
62853360 AATTAA
1 AATTAA
62853366 ATAGCCTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.55, C:0.00, G:0.11, T:0.34
Consensus pattern (16 bp):
AATTAATTGAAAAATG
Found at i:62853560 original size:53 final size:53
Alignment explanation
Indices: 62853486--62853603 Score: 166
Period size: 53 Copynumber: 2.2 Consensus size: 53
62853476 TGCTGTTACC
* **
62853486 GTTATTGTTACTGTTTCAGATTTGTTCCGATGAGGTACTCTGTGTATTGTACT
1 GTTATTGTTACTATTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGTACT
*
62853539 GTTATTGTTACTA-TTCTAGATTTGTTCCTATGAGGTACTCTGTGTACCGTACT
1 GTTATTGTTACTATTTC-AGATTTGTTCCGATGAGGTACTCTGTGTACCGTACT
* *
62853592 GCTACTGTTACT
1 GTTATTGTTACT
62853604 GTTACTGTTA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
52 3 0.05
53 55 0.95
ACGTcount: A:0.18, C:0.16, G:0.20, T:0.46
Consensus pattern (53 bp):
GTTATTGTTACTATTTCAGATTTGTTCCGATGAGGTACTCTGTGTACCGTACT
Found at i:62853603 original size:6 final size:6
Alignment explanation
Indices: 62853588--62853618 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
62853578 CTGTGTACCG
*
62853588 TACTGC TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT TACTGT T
62853619 TCGGCTTCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.48
Consensus pattern (6 bp):
TACTGT
Found at i:62853794 original size:18 final size:18
Alignment explanation
Indices: 62853723--62853796 Score: 51
Period size: 18 Copynumber: 4.1 Consensus size: 18
62853713 AAATGAACTG
*
62853723 GAAAGATTGACTGTTACT
1 GAAAAATTGACTGTTACT
* * *
62853741 GAATAATTTAATTGTTACT
1 GAA-AAATTGACTGTTACT
* * * *
62853760 G-TATATCTGATTTTTACT
1 GAAAAAT-TGACTGTTACT
62853778 GAAAAATTGACTGTTACT
1 GAAAAATTGACTGTTACT
62853796 G
1 G
62853797 GATAACCGAT
Statistics
Matches: 40, Mismatches: 13, Indels: 6
0.68 0.22 0.10
Matches are distributed among these distances:
17 2 0.05
18 23 0.57
19 15 0.38
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.42
Consensus pattern (18 bp):
GAAAAATTGACTGTTACT
Found at i:62853877 original size:36 final size:33
Alignment explanation
Indices: 62853810--62853887 Score: 84
Period size: 36 Copynumber: 2.3 Consensus size: 33
62853800 AACCGATCAG
* * *
62853810 TTGATTGATACTGAATAACTTATTATTGAATAA
1 TTGATTGTTACCGAATAACTTATTACTGAATAA
62853843 TTGATTGTTACCGAATAACTGACTATTACTGAATAA
1 TTGATTGTTACCGAATAACT---TATTACTGAATAA
* *
62853879 ATAATTGTT
1 TTGATTGTT
62853888 CTGATTGACT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
33 18 0.49
36 19 0.51
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (33 bp):
TTGATTGTTACCGAATAACTTATTACTGAATAA
Found at i:62858142 original size:57 final size:57
Alignment explanation
Indices: 62858022--62858218 Score: 175
Period size: 57 Copynumber: 3.4 Consensus size: 57
62858012 CATTATAGAT
* * * * * * *
62858022 AGATTTATCCGGGACAGGTAATCCTGATATAA-TTCCTCTCAAGCATATGTTACA-ATTA
1 AGATTTAGCCTGGACTGGTAATCCTAAT-TAAGTACTTCT-AAGCATATGTTACAGA-AA
* * *
62858080 GGATTTAGCCTGGACTGGTAATCCTAATTGAGCT-CTTCTAAGTATATGTTACAGAAA
1 AGATTTAGCCTGGACTGGTAATCCTAATTAAG-TACTTCTAAGCATATGTTACAGAAA
* * ** *
62858137 AGATTTAGCCTGGACTGGTAATCCTAATTAAGTACTTGTGAGCATATGTTGGAGATA
1 AGATTTAGCCTGGACTGGTAATCCTAATTAAGTACTTCTAAGCATATGTTACAGAAA
* * *
62858194 GGATTTAGCCTGAATTGGTAATCCT
1 AGATTTAGCCTGGACTGGTAATCCT
62858219 GTTATATAAT
Statistics
Matches: 115, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
56 1 0.01
57 85 0.74
58 28 0.24
59 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34
Consensus pattern (57 bp):
AGATTTAGCCTGGACTGGTAATCCTAATTAAGTACTTCTAAGCATATGTTACAGAAA
Found at i:62864286 original size:20 final size:21
Alignment explanation
Indices: 62864251--62864290 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
62864241 CTAAACCAAT
*
62864251 AACTTAAGAAATTTTCAAAAA
1 AACTTAAGAAAATTTCAAAAA
62864272 AACTT-AGAAAATTTCAAAA
1 AACTTAAGAAAATTTCAAAA
62864291 TATAGGGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.28
Consensus pattern (21 bp):
AACTTAAGAAAATTTCAAAAA
Found at i:62868025 original size:27 final size:26
Alignment explanation
Indices: 62867987--62868355 Score: 293
Period size: 27 Copynumber: 13.7 Consensus size: 26
62867977 TAATAAAGAG
*
62867987 AAATTACCGAAATACCCTCAGTTTGTA
1 AAATTACTGAAATACCCTC-GTTTGTA
*
62868014 AAATTACTGAAATATCCTCGGTTTGTA
1 AAATTACTGAAATACCCTC-GTTTGTA
* *
62868041 AAATAACTGAAATACCCTCGATTTATA
1 AAATTACTGAAATACCCTCG-TTTGTA
*
62868068 AAATTA-TCAAAATACCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCG-TTTGTA
** * * * *
62868095 AAATTACCAAAACACCCCCAATTTATA
1 AAATTACTGAAATACCCTC-GTTTGTA
* *
62868122 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCG-TTTGTA
*
62868149 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCG-TTTGTA
*
62868176 AAATTA-TCGAAATACCCTTGGTTTGTA
1 AAATTACT-GAAATACCC-TCGTTTGTA
* * *
62868203 AAATTATTGAAACACCCTCAATTTGTA
1 AAATTACTGAAATACCCTC-GTTTGTA
*
62868230 AAATTA-TCGAAATACAACT-GATTTGTA
1 AAATTACT-GAAATAC-CCTCG-TTTGTA
** *
62868257 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTC-GTTTGTA
62868284 AAATTACT-AAGATACCCTCGATTTGTA
1 AAATTACTGAA-ATACCCTCG-TTTGTA
* *
62868311 AAATTACCGAAACA-CCTCCGATTTGTA
1 AAATTACTGAAATACCCT-CG-TTTGTA
62868338 AAATTA-TCGAAATACCCT
1 AAATTACT-GAAATACCCT
62868356 TATAGTATAA
Statistics
Matches: 282, Mismatches: 39, Indels: 41
0.78 0.11 0.11
Matches are distributed among these distances:
26 12 0.04
27 260 0.92
28 10 0.04
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACTGAAATACCCTCGTTTGTA
Found at i:62868081 original size:54 final size:54
Alignment explanation
Indices: 62867987--62868382 Score: 433
Period size: 54 Copynumber: 7.3 Consensus size: 54
62867977 TAATAAAGAG
* * *
62867987 AAATTACCGAAATACCCTCAGTTTGTAAAATTA-CTGAAATATCCTCGGTTTGTA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTATC-GAAATACCCTCGATTTGTA
* * * * *
62868041 AAATAACTGAAATACCCTCGATTTATAAAATTATCAAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTATCGAAATACCCTCGATTTGTA
* * * * * *
62868095 AAATTACCAAAACACCCCCAATTTATAAAATTACCGAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTATCGAAATACCCTCGATTTGTA
** * * *
62868149 AAATTACTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGGTTTGTA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTATCGAAATACCCTCGATTTGTA
** * *
62868203 AAATTATTGAAACACCCTCAATTTGTAAAATTATCGAAATACAACT-GATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTATCGAAATAC-CCTCGATTTGTA
* *
62868257 AAATTACCAAAATACCCTCAATTTGTAAAATTA-CTAAGATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTATCGAA-ATACCCTCGATTTGTA
* * * * *
62868311 AAATTACCGAAACA-CCTCCGATTTGTAAAATTATCGAAATACCCT-TATAGTATA
1 AAATTACCGAAATACCCT-CAATTTGTAAAATTATCGAAATACCCTCGAT-TTGTA
*
62868365 AAATTACCAAAATACCCT
1 AAATTACCGAAATACCCT
62868383 TGTAGTATAA
Statistics
Matches: 287, Mismatches: 47, Indels: 15
0.82 0.13 0.04
Matches are distributed among these distances:
53 10 0.03
54 268 0.93
55 9 0.03
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCGAAATACCCTCAATTTGTAAAATTATCGAAATACCCTCGATTTGTA
Found at i:62868124 original size:81 final size:81
Alignment explanation
Indices: 62867987--62868355 Score: 397
Period size: 81 Copynumber: 4.6 Consensus size: 81
62867977 TAATAAAGAG
* * ** * ** *
62867987 AAATTACCGAAATACCCTC-AGTTTGTAAAATTACTGAAATATCCTCGGTTTGTAAAATAACTGA
1 AAATTATCAAAATACCCTCGA-TTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACTGA
* *
62868051 AATACCCTCGATTTATA
65 AACACCCTCGATTTGTA
* * * *
62868068 AAATTATCAAAATACCCTCGATTTGTAAAATTACCAAAACACCCCCAATTTATAAAATTACCGAA
1 AAATTATCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACTGAA
62868133 ACACCCTCGATTTGTA
66 ACACCCTCGATTTGTA
* * *** *
62868149 AAATTA-CTAAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGGTTTGTAAAATTATTGA
1 AAATTATC-AAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACTGA
*
62868213 AACACCCTCAATTTGTA
65 AACACCCTCGATTTGTA
* *
62868230 AAATTATCGAAATACAACT-GATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACT-A
1 AAATTATCAAAATAC-CCTCGATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACTGA
*
62868293 AGATACCCTCGATTTGTA
65 A-ACACCCTCGATTTGTA
* * * * *
62868311 AAATTACCGAAACA-CCTCCGATTTGTAAAATTATCGAAATACCCT
1 AAATTATCAAAATACCCT-CGATTTGTAAAATTACCAAAATACCCT
62868356 TATAGTATAA
Statistics
Matches: 241, Mismatches: 40, Indels: 14
0.82 0.14 0.05
Matches are distributed among these distances:
79 2 0.01
80 3 0.01
81 232 0.96
82 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (81 bp):
AAATTATCAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACTGAA
ACACCCTCGATTTGTA
Found at i:62868366 original size:27 final size:27
Alignment explanation
Indices: 62868336--62868414 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
62868326 CTCCGATTTG
62868336 TAAAATTATCGAAATACCCTTATAGTA
1 TAAAATTATCGAAATACCCTTATAGTA
* * *
62868363 TAAAATTACCAAAATACCCTTGTAGTA
1 TAAAATTATCGAAATACCCTTATAGTA
* * *
62868390 TAAAATGATCGACATACCCCTATAG
1 TAAAATTATCGAAATACCCTTATAG
62868415 GGTGAAATGA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.29
Consensus pattern (27 bp):
TAAAATTATCGAAATACCCTTATAGTA
Found at i:62871282 original size:28 final size:28
Alignment explanation
Indices: 62871222--62871287 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 28
62871212 TGGGAAGTAG
* ***
62871222 TTGGGCCTGATGGGCCATATGAATGTGA
1 TTGGGCCTAATGGGCCATATGAACAAGA
* *
62871250 CTGGGCCTAATGGGCCATGTGAACAAGA
1 TTGGGCCTAATGGGCCATATGAACAAGA
62871278 TTGGGCCTAA
1 TTGGGCCTAA
62871288 AGGGGCCAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.24
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAACAAGA
Found at i:62872024 original size:27 final size:27
Alignment explanation
Indices: 62871622--62872013 Score: 437
Period size: 27 Copynumber: 14.5 Consensus size: 27
62871612 ATACCCCCAG
62871622 CCGAAATACCCTTGATTTGTAAAATTA
1 CCGAAATACCCTTGATTTGTAAAATTA
*
62871649 CCGAAATACCCTTAATTTGTAAAATTA
1 CCGAAATACCCTTGATTTGTAAAATTA
** ** *
62871676 CTAAAATACCCTCAATTTATAAAATTA
1 CCGAAATACCCTTGATTTGTAAAATTA
* * *
62871703 TCGAAATACTCTCGATTTGTAAAATTA
1 CCGAAATACCCTTGATTTGTAAAATTA
* * **
62871730 TCGAAACACCCCCGATTTGTAAAATTA
1 CCGAAATACCCTTGATTTGTAAAATTA
* *
62871757 TCGAAATACCCTCGATTTGTAAAATTA
1 CCGAAATACCCTTGATTTGTAAAATTA
*
62871784 CCGAAATACCCTTGGTTTGTAAAATTA
1 CCGAAATACCCTTGATTTGTAAAATTA
* * *
62871811 CTGAAATACCC-TAAGTTTGCAAAATTA
1 CCGAAATACCCTTGA-TTTGTAAAATTA
*** * *
62871838 TTAAAACACCCTTAATTTGTAAAATTA
1 CCGAAATACCCTTGATTTGTAAAATTA
*
62871865 TCGAAATACCCTTGATTTGTAAAATTA
1 CCGAAATACCCTTGATTTGTAAAATTA
* *
62871892 CCAAAATACCCTCGATTTGTAAAATTA
1 CCGAAATACCCTTGATTTGTAAAATTA
*
62871919 CCGAAATACCCTCGATTTGTAAAATTA
1 CCGAAATACCCTTGATTTGTAAAATTA
* * *
62871946 TCGAAACACCCCTGATTTGTAAAATTA
1 CCGAAATACCCTTGATTTGTAAAATTA
* * *
62871973 TCAAAATACCCTT-ATAGTGTAAAATTA
1 CCGAAATACCCTTGAT-TTGTAAAATTA
*
62872000 CCAAAATACCCTTG
1 CCGAAATACCCTTG
62872014 TAGTGTAAAA
Statistics
Matches: 317, Mismatches: 44, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
26 3 0.01
27 311 0.98
28 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
CCGAAATACCCTTGATTTGTAAAATTA
Found at i:62872526 original size:11 final size:11
Alignment explanation
Indices: 62872510--62872535 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
62872500 ATTGAATGTA
62872510 TGATATTATTG
1 TGATATTATTG
62872521 TGATATTATTG
1 TGATATTATTG
62872532 TGAT
1 TGAT
62872536 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:62874985 original size:21 final size:22
Alignment explanation
Indices: 62874938--62874994 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
62874928 ACACGGACTG
62874938 CTCACACGGG--TGTGTGCCCT
1 CTCACACGGGCATGTGTGCCCT
*
62874958 CTCCACACGGGCATGTGTGGCCT
1 CT-CACACGGGCATGTGTGCCCT
*
62874981 -TCACATGGGCATGT
1 CTCACACGGGCATGT
62874995 AGATCCCCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 2 0.06
21 20 0.62
22 1 0.03
23 9 0.28
ACGTcount: A:0.14, C:0.32, G:0.30, T:0.25
Consensus pattern (22 bp):
CTCACACGGGCATGTGTGCCCT
Found at i:62883480 original size:28 final size:28
Alignment explanation
Indices: 62883444--62883499 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
62883434 GCCGGAGAAG
62883444 AGAGAGAAAGAGAAA-GGAAAAAGAAAAA
1 AGAGAGAAAG-GAAAGGGAAAAAGAAAAA
*
62883472 AGAGAGAAAGGAAAGGGAAAGAGAAAAA
1 AGAGAGAAAGGAAAGGGAAAAAGAAAAA
62883500 TGGATTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 4 0.15
28 22 0.85
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (28 bp):
AGAGAGAAAGGAAAGGGAAAAAGAAAAA
Found at i:62884510 original size:21 final size:22
Alignment explanation
Indices: 62884486--62884538 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
62884476 TTTTAACAAT
**
62884486 AATTCTGAAAAAT-TATTAAAA
1 AATTCTGAAAAATATAAGAAAA
*
62884507 AATT-TTAAAAATATAAGAAAA
1 AATTCTGAAAAATATAAGAAAA
*
62884528 AACTCTGAAAA
1 AATTCTGAAAA
62884539 TTCATATTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 7 0.28
21 13 0.52
22 5 0.20
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.28
Consensus pattern (22 bp):
AATTCTGAAAAATATAAGAAAA
Found at i:62885069 original size:20 final size:19
Alignment explanation
Indices: 62885027--62885075 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
62885017 TATTTCTCAA
*
62885027 CAAAAAAATTAAAAATTTC
1 CAAAAAAATTAAAAAATTC
62885046 CAAAAAAATTCAAAATAATT-
1 CAAAAAAATT-AAAA-AATTC
*
62885066 CAAAATAATT
1 CAAAAAAATT
62885076 TTTAAAATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 10 0.38
20 13 0.50
21 3 0.12
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (19 bp):
CAAAAAAATTAAAAAATTC
Found at i:62885145 original size:19 final size:18
Alignment explanation
Indices: 62885121--62885161 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
62885111 TATTTTTTTT
62885121 AAAATTATAAAAAAATATA
1 AAAATTAT-AAAAAATATA
* *
62885140 AAAATTCTAAAGAATATA
1 AAAATTATAAAAAATATA
62885158 AAAA
1 AAAA
62885162 ATGCTAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (18 bp):
AAAATTATAAAAAATATA
Found at i:62887202 original size:4 final size:4
Alignment explanation
Indices: 62887180--62887268 Score: 69
Period size: 4 Copynumber: 22.2 Consensus size: 4
62887170 GAAACCCTAG
*
62887180 TCTT GTCTT TC-T CCTT TCTT TCTT TCTT TCTT TCTT T-TT T-TT TCTTT
1 TCTT -TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC-TT
* * * *
62887227 TTTT TCTT TCCT T-TT TGTT TCATTT TGTT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TC--TT TCTT TCTT TCTT TCTT T
62887269 ATTCATTTAC
Statistics
Matches: 69, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
3 10 0.14
4 49 0.71
5 7 0.10
6 3 0.04
ACGTcount: A:0.01, C:0.20, G:0.03, T:0.75
Consensus pattern (4 bp):
TCTT
Found at i:62887211 original size:23 final size:23
Alignment explanation
Indices: 62887180--62887262 Score: 69
Period size: 23 Copynumber: 3.5 Consensus size: 23
62887170 GAAACCCTAG
62887180 TCTTGTCTTTCTCCTTTCTTTC-TT
1 TCTT-TCTTTCT-CTTTCTTTCTTT
* *
62887204 TCTTTCTTTCTTTTTTTTTCTTT
1 TCTTTCTTTCTCTTTCTTTCTTT
* * *
62887227 TTTTTCTTTCCTTTTTGTTTCATTT
1 TCTTTCTTT-CTCTTTCTTTC-TTT
*
62887252 TGTTTCTTTCT
1 TCTTTCTTTCT
62887263 TTCTTTATTC
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
22 7 0.14
23 17 0.33
24 16 0.31
25 11 0.22
ACGTcount: A:0.01, C:0.20, G:0.04, T:0.75
Consensus pattern (23 bp):
TCTTTCTTTCTCTTTCTTTCTTT
Found at i:62887273 original size:25 final size:23
Alignment explanation
Indices: 62887206--62887276 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 23
62887196 TCTTTCTTTC
*
62887206 TTTCTTTCTTTTTTTTTC-TTTTT
1 TTTCTTTC-TTTTTTTTCATTTTG
62887229 TTTCTTTCCTTTTTGTTTCATTTTG
1 TTTCTTT-CTTTTT-TTTCATTTTG
62887254 TTTCTTTCTTTCTTTATTCATTT
1 TTTCTTTCTTT-TTT-TTCATTT
62887277 ACTTATTTGT
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
23 12 0.29
24 10 0.24
25 20 0.48
ACGTcount: A:0.04, C:0.15, G:0.03, T:0.77
Consensus pattern (23 bp):
TTTCTTTCTTTTTTTTCATTTTG
Found at i:62887340 original size:26 final size:25
Alignment explanation
Indices: 62887293--62887341 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
62887283 TTGTTTTGTT
* * *
62887293 TTATTATATTTATTTTATTATTATA
1 TTATTATATTTACTTAAATATTATA
62887318 TTATATATATTTACTTAAATATTA
1 TTAT-TATATTTACTTAAATATTA
62887342 AGTAACATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (25 bp):
TTATTATATTTACTTAAATATTATA
Found at i:62897201 original size:6 final size:6
Alignment explanation
Indices: 62897190--62897220 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
62897180 TATATGCCTC
62897190 TCCTTT TCCTTT TCCTTT TCCTTT TCCTTT T
1 TCCTTT TCCTTT TCCTTT TCCTTT TCCTTT T
62897221 ATGCAAGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
TCCTTT
Found at i:62901631 original size:18 final size:18
Alignment explanation
Indices: 62901605--62901661 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 18
62901595 TACGACCGTT
62901605 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
62901623 TACGATACTATTTACGTA
1 TACGGTACTATTCACGTA
*
62901641 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
62901659 TAC
1 TAC
62901662 AGTAGTTGGG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:62909247 original size:35 final size:35
Alignment explanation
Indices: 62909208--62909276 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
62909198 ACTTGCCTCT
62909208 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
* *
62909243 TCCCACTCTTCCATGTTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
62909277 TCACACACCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.17, C:0.48, G:0.12, T:0.23
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:62910131 original size:3 final size:3
Alignment explanation
Indices: 62910116--62910150 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
62910106 TGTTATTTCA
*
62910116 TAT TAT TAA TAT TATT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT T
62910151 GTTGTTGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:62910135 original size:16 final size:16
Alignment explanation
Indices: 62910116--62910147 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
62910106 TGTTATTTCA
62910116 TATTATTAATATTATT
1 TATTATTAATATTATT
*
62910132 TATTATTATTATTATT
1 TATTATTAATATTATT
62910148 ATTGTTGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TATTATTAATATTATT
Found at i:62910155 original size:3 final size:3
Alignment explanation
Indices: 62910149--62910174 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
62910139 ATTATTATTA
62910149 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
62910175 ATTATTGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:62910516 original size:22 final size:23
Alignment explanation
Indices: 62910488--62910542 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
62910478 TAATTTTTTA
62910488 ATATATATTATATGAATA-ATTT
1 ATATATATTATATGAATATATTT
* *
62910510 ATATATAATATTATGTATATATTT
1 ATATATATTA-TATGAATATATTT
62910534 -TA-ATATTAT
1 ATATATATTAT
62910543 CAGTTATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 1 0.04
22 14 0.50
23 9 0.32
24 4 0.14
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
ATATATATTATATGAATATATTT
Found at i:62922955 original size:81 final size:81
Alignment explanation
Indices: 62922820--62922983 Score: 319
Period size: 81 Copynumber: 2.0 Consensus size: 81
62922810 ATAATCATAT
62922820 AGGCATAAAGGCATTTAAGACAAACATGTGCATATCATGATAACGTCATGCATGACATATACAGA
1 AGGCATAAAGGCATTTAAGACAAACATGTGCATATCATGATAACGTCATGCATGACATATACAGA
62922885 TACTCAGTAGAGCGAG
66 TACTCAGTAGAGCGAG
62922901 AGGCATAAAGGCATTTAAGACAAACATGTGCATATCATGATAACGTCATGCATGACATATACAGA
1 AGGCATAAAGGCATTTAAGACAAACATGTGCATATCATGATAACGTCATGCATGACATATACAGA
*
62922966 TACTTAGTAGAGCGAG
66 TACTCAGTAGAGCGAG
62922982 AG
1 AG
62922984 AAGGTGATGA
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.23
Consensus pattern (81 bp):
AGGCATAAAGGCATTTAAGACAAACATGTGCATATCATGATAACGTCATGCATGACATATACAGA
TACTCAGTAGAGCGAG
Found at i:62923192 original size:74 final size:74
Alignment explanation
Indices: 62923078--62924093 Score: 1419
Period size: 74 Copynumber: 13.7 Consensus size: 74
62923068 TTCCGTTTTC
* * ** *
62923078 AAAATTCAACTTATATTGCGAGAAATGGGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
62923143 TATTTTCAA
66 TATTTTCAA
62923152 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
62923217 TATTTTCAA
66 TATTTTCAA
*
62923226 AAAAATCAACTCATATTGCGAGAGGTGAGGTGAGCCTCGGGACACGC-GAAGGTAATTTTAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTG-AGGTAATTTTAATTT
62923290 CTATTTTCAA
65 CTATTTTCAA
*
62923300 AAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
62923365 TATTTTCAA
66 TATTTTCAA
62923374 AAAAATCAACTCA-ATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
62923438 TATTTTCAA
66 TATTTTCAA
*
62923447 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA-TTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
62923511 TATTTTCAA
66 TATTTTCAA
* *
62923520 AAAAATCAACTCATATTACGAGAGGTGAGGTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
62923585 TATTTTCAA
66 TATTTTCAA
62923594 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
*
62923659 TATTTTTAA
66 TATTTTCAA
* * * *
62923668 AAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTTGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
*
62923733 TGTTTTCAAAA
66 TATTTTC--AA
** ** *
62923744 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTT-AATTT
62923808 CTATTTTC--
65 CTATTTTCAA
* * *
62923816 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTAATTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTAATTTTAATT
* * *
62923881 TGTGTTGTC-A
64 TCTATTTTCAA
* * ** * *
62923891 AAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAAGACATGCTGAGGT-ATTGTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT-TTAA---
*
62923955 TTTGTATGTTTC--
62 TTTCTAT-TTTCAA
* ** * *
62923967 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACATGCTGAGGT-ATTGTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT-TTAA---
*
62924031 TTTGTATGTTTC--
62 TTTCTAT-TTTCAA
* *
62924043 AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGACACGCTGAG
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
62924094 TGAGTTGAGC
Statistics
Matches: 873, Mismatches: 53, Indels: 30
0.91 0.06 0.03
Matches are distributed among these distances:
72 39 0.04
73 161 0.18
74 438 0.50
75 45 0.05
76 187 0.21
77 3 0.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31
Consensus pattern (74 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
TATTTTCAA
Found at i:62923440 original size:147 final size:148
Alignment explanation
Indices: 62923078--62924093 Score: 1419
Period size: 147 Copynumber: 6.8 Consensus size: 148
62923068 TTCCGTTTTC
* * ** *
62923078 AAAATTCAACTTATATTGCGAGAAATGGGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
62923143 TATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
66 TATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
62923208 TTTAATTTCTATTTTCAA
131 TTTAATTTCTATTTTCAA
*
62923226 AAAAATCAACTCATATTGCGAGAGGTGAGGTGAGCCTCGGGACACGC-GAAGGTAATTTTAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTG-AGGTAATTTTAATTT
*
62923290 CTATTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
65 CTATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
62923355 TTTTAATTTCTATTTTCAA
130 TTTTAATTTCTATTTTCAA
62923374 AAAAATCAACTCA-ATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
*
62923438 TATTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA-
66 TATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
62923502 TTTAATTTCTATTTTCAA
131 TTTAATTTCTATTTTCAA
* *
62923520 AAAAATCAACTCATATTACGAGAGGTGAGGTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
62923585 TATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
66 TATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
*
62923650 TTTAATTTCTATTTTTAA
131 TTTAATTTCTATTTTCAA
* * * *
62923668 AAAAATCAACTCATATTGCGAGAGATGAATTGAGCCTTGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
* ** ** *
62923733 TGTTTTCAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-
66 TATTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
62923797 ATTTTCAATTTCTATTTTC--
129 ATTTT-AATTTCTATTTTCAA
* * *
62923816 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTGAGGTAATTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTAATTTTAATT
* * * * * ** *
62923881 TGTGTTGTC-AAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAAGACATGCTGAGGT-
64 TCTATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA
* *
62923944 ATTGTCAATTTTTTGTATGTTTC--
129 ATT-TTAA---TTTCTAT-TTTCAA
* ** * *
62923967 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAAGACATGCTGAGGT-ATTGTCAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATT-TTAA---
* * *
62924031 TTTGTATGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGGACACGCTGAG
62 TTTCTAT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAG
62924094 TGAGTTGAGC
Statistics
Matches: 796, Mismatches: 53, Indels: 34
0.90 0.06 0.04
Matches are distributed among these distances:
146 31 0.04
147 276 0.35
148 276 0.35
149 21 0.03
150 96 0.12
151 41 0.05
152 52 0.07
153 3 0.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31
Consensus pattern (148 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTTAATTTC
TATTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAAT
TTTAATTTCTATTTTCAA
Found at i:62924725 original size:35 final size:35
Alignment explanation
Indices: 62924679--62924747 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
62924669 ACTTGCCTCT
62924679 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
*
62924714 TCCCACTCTCCCATGTTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
62924748 TCACACACCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.17, C:0.49, G:0.12, T:0.22
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:62937266 original size:3 final size:3
Alignment explanation
Indices: 62937251--62937294 Score: 52
Period size: 3 Copynumber: 14.3 Consensus size: 3
62937241 CTTTTATTCA
* * *
62937251 TAT TAT TAA TAT TATT TAT TAT TAT TAT TAT TGT TGT TAT TAT T
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT T
62937295 GTACATTAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:62937272 original size:16 final size:16
Alignment explanation
Indices: 62937251--62937282 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
62937241 CTTTTATTCA
62937251 TATTATTAATATTATT
1 TATTATTAATATTATT
*
62937267 TATTATTATTATTATT
1 TATTATTAATATTATT
62937283 GTTGTTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TATTATTAATATTATT
Found at i:62937638 original size:25 final size:23
Alignment explanation
Indices: 62937586--62937642 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 23
62937576 ATAGTCATTT
62937586 TTTTAATATATATTATATGAATA
1 TTTTAATATATATTATATGAATA
* *
62937609 ATTT-ATATATAATATTATGTATATA
1 TTTTAATATATATTA-TATG-A-ATA
62937634 TTTTAATAT
1 TTTTAATAT
62937643 TTTATCAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
22 9 0.33
23 7 0.26
24 1 0.04
25 6 0.22
26 4 0.15
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (23 bp):
TTTTAATATATATTATATGAATA
Found at i:62950283 original size:73 final size:70
Alignment explanation
Indices: 62949994--62950960 Score: 1328
Period size: 73 Copynumber: 13.8 Consensus size: 70
62949984 GTTTACATTC
*
62949994 TTTCAAAAAATCAACTCATATTGCGAGA-ATGAGTTGAGCCTC-GACACG--GAGGTATTTTAAT
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTAAT
62950055 TT-T-T
65 TTCTGT
* *
62950059 TTTCAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCGGGCACGCCGAGGTATTTTAA-
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTAAT
*
62950122 TT-TAT
65 TTCTGT
*
62950127 TTTC-AAAA-CAACTCATATTGCGAGAGGTGAG-TGAGCCTCGGACACGC-GAGGTAATTTAATT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTAATT
62950188 T-T-T
66 TCTGT
*
62950191 TTTCAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTTAAT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGT-ATTTTAAT
62950256 TTCTGT
65 TTCTGT
*
62950262 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCA
1 TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGT-ATTTTA
*
62950327 ATTTCTAT
63 ATTTCTGT
62950335 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTAATT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTAATT
62950400 TCTGT
66 TCTGT
62950405 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG-CACGCTGAGGTATTTTAAT
1 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTAAT
*
62950469 TTCTTT
65 TTCTGT
62950475 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTTAAT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGT-ATTTTAAT
62950540 TTCTGTT
65 TTCTG-T
* *
62950547 TTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-GGACACGCTGAGGTAATTTCAAT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGT-ATTTTAAT
62950611 TTCTGT
65 TTCTGT
** * *
62950617 TTTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TTTC---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCTGAGGTATTTT
*
62950682 CAATTTCTAT
62 -AATTTCTGT
*
62950692 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTCAA-
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGT-ATTTTAAT
62950756 TT-TGT
65 TTCTGT
* * * *
62950761 TGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACATGCTGAGGTATTTCAATT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTAA-T
*
62950826 TTTTGTAT
65 TTCTG--T
* * *
62950834 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AAGCATGCTGAGGTATTTCAAT
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGA-CACGCTGAGGTATTTTAA-
*
62950898 TTTTTGTT
64 TTTCTG-T
* *
62950906 GTTTC-AAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGACACGCTGAGG
1 -TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGG
62950961 AGTTGAGCTC
Statistics
Matches: 831, Mismatches: 37, Indels: 61
0.89 0.04 0.07
Matches are distributed among these distances:
64 16 0.02
65 80 0.10
66 36 0.04
67 19 0.02
68 29 0.03
69 104 0.13
70 64 0.08
71 152 0.18
72 128 0.15
73 175 0.21
74 4 0.00
75 24 0.03
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32
Consensus pattern (70 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTATTTTAATT
TCTGT
Found at i:62950790 original size:214 final size:211
Alignment explanation
Indices: 62949994--62950960 Score: 1366
Period size: 214 Copynumber: 4.6 Consensus size: 211
62949984 GTTTACATTC
*
62949994 TTTCAAAAAATCAACTCATATTGCGAGA-ATGAGTTGAGCCTCGACACG--GAGGTATTTTAA-T
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACACGCTGAGGTATTTTAATT
* *
62950055 T-TTTTTTCAAAAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCGGGCACGCCGAGGT-AT
66 TCTTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAAT
*
62950117 TTTAA-TT-TATTTTC-AAAA-CAACTCATATTGCGAGAGGTGAG-TGAGCCTCGGACACGC-GA
130 TTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGA
62950176 GGTAATTT-AATTT-T-T
195 GGT-ATTTCAATTTCTGT
*
62950191 TTTC-AAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTTAA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GACACGCTGAGGT-ATTTTAA
*
62950255 TTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGT
64 TTTCTTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGT
62950320 AATTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGC
127 AATTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGC
*
62950385 TGAGGTATTTTAATTTCTGT
192 TGAGGTATTTCAATTTCTGT
*
62950405 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCACGCTGAGGTATTTTAATT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACACGCTGAGGTATTTTAATT
62950470 TCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATT
66 TCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATT
* * *
62950535 TTAATTTCTGTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-GGACACGCTGA
131 TCAATTTCT-ATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGA
62950599 GGTAATTTCAATTTCTGT
195 GGT-ATTTCAATTTCTGT
** *
62950617 TTTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GACACGCTGAGGTATTTT
*
62950682 CAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGG
62 -AATTTCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGG
* * * *
62950747 TAATTTCAA-TT-TGTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACATG
126 TAATTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACG
*
62950810 CTGAGGTATTTCAATTTTTTGTAT
191 CTGAGGTATTTCAA-TTTCTG--T
* * *
62950834 TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGCATGCTGAGGTATTTCAAT
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGA-CACGCTGAGGTATTTTAA-
* * *
62950898 TTTTTGTTGTTTC-AAAATCAACTCATATTGCGAGAGGTGAATTGAGCCTCAGACACGCTGAGG
64 TTTCT-TT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGG
62950961 AGTTGAGCTC
Statistics
Matches: 700, Mismatches: 35, Indels: 53
0.89 0.04 0.07
Matches are distributed among these distances:
196 22 0.03
197 17 0.02
198 6 0.01
200 5 0.01
201 7 0.01
202 2 0.00
203 6 0.01
204 24 0.03
205 26 0.04
206 6 0.01
207 2 0.00
208 7 0.01
209 4 0.01
210 23 0.03
211 98 0.14
212 71 0.10
213 35 0.05
214 186 0.27
215 59 0.08
216 18 0.03
217 76 0.11
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.32
Consensus pattern (211 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACACGCTGAGGTATTTTAATT
TCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATT
TCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAG
GTATTTCAATTTCTGT
Found at i:62951590 original size:35 final size:35
Alignment explanation
Indices: 62951551--62951619 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
62951541 ACTTGCCTCT
62951551 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
*
62951586 TCCCACTCTCCCATGTTGTCTGCCACCAGCACCA
1 TCCCACTCTCCCATGCTGTCTGCCACCAGCACCA
62951620 TCACACACCC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.17, C:0.49, G:0.12, T:0.22
Consensus pattern (35 bp):
TCCCACTCTCCCATGCTGTCTGCCACCAGCACCAC
Found at i:62960840 original size:17 final size:17
Alignment explanation
Indices: 62960818--62960874 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
62960808 TAACTCGCTA
*
62960818 AAAACACGATTTTTATT
1 AAAACACGGTTTTTATT
*
62960835 AAAACAAAGGTTTTCTA--
1 AAAAC-ACGGTTTT-TATT
62960852 AAAACACGGTTTTTATT
1 AAAACACGGTTTTTATT
62960869 AAAACA
1 AAAACA
62960875 AAGGTTTTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
15 2 0.06
16 7 0.21
17 16 0.48
18 6 0.18
19 2 0.06
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (17 bp):
AAAACACGGTTTTTATT
Found at i:62960858 original size:34 final size:34
Alignment explanation
Indices: 62960815--62960894 Score: 142
Period size: 34 Copynumber: 2.4 Consensus size: 34
62960805 GGATAACTCG
62960815 CTAAAAACACGATTTTTATTAAAACAAAGGTTTT
1 CTAAAAACACGATTTTTATTAAAACAAAGGTTTT
*
62960849 CTAAAAACACGGTTTTTATTAAAACAAAGGTTTT
1 CTAAAAACACGATTTTTATTAAAACAAAGGTTTT
*
62960883 CTAAAAGCACGA
1 CTAAAAACACGA
62960895 ACTGCCTTCT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.31
Consensus pattern (34 bp):
CTAAAAACACGATTTTTATTAAAACAAAGGTTTT
Found at i:62960882 original size:17 final size:17
Alignment explanation
Indices: 62960828--62960882 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
62960818 AAAACACGAT
62960828 TTTTATTAAAACAAAGG
1 TTTTATTAAAACAAAGG
* * *
62960845 TTTTCTAAAAAC-ACGG
1 TTTTATTAAAACAAAGG
62960861 TTTTTATTAAAACAAAGG
1 -TTTTATTAAAACAAAGG
62960879 TTTT
1 TTTT
62960883 CTAAAAGCAC
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
16 3 0.10
17 24 0.80
18 3 0.10
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (17 bp):
TTTTATTAAAACAAAGG
Done.