Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 196 of 325
Found at i:63538369 original size:19 final size:17
Alignment explanation
Indices: 63538344--63538410 Score: 62
Period size: 20 Copynumber: 3.5 Consensus size: 17
63538334 ATAGGTATAC
63538344 TAAAAATATGAGGAAGTA
1 TAAAAATATGAGGAA-TA
*
63538362 TCAAAAATTTGGAGGGAATA
1 T-AAAAATAT-GA-GGAATA
63538382 TAAAAAATTATGAGAGAATA
1 T-AAAAA-TATGAG-GAATA
63538402 TAAAAATAT
1 TAAAAATAT
63538411 AAGAAAGTGC
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
18 4 0.10
19 13 0.32
20 18 0.44
21 6 0.15
ACGTcount: A:0.55, C:0.01, G:0.18, T:0.25
Consensus pattern (17 bp):
TAAAAATATGAGGAATA
Found at i:63538376 original size:20 final size:20
Alignment explanation
Indices: 63538364--63538407 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
63538354 AGGAAGTATC
63538364 AAAAATTTGGAGGGAATATA
1 AAAAATTTGGAGGGAATATA
*
63538384 AAAAATTAT-GAGAGAATATA
1 AAAAATT-TGGAGGGAATATA
63538404 AAAA
1 AAAA
63538408 TATAAGAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.59, C:0.00, G:0.18, T:0.23
Consensus pattern (20 bp):
AAAAATTTGGAGGGAATATA
Found at i:63538491 original size:25 final size:26
Alignment explanation
Indices: 63538443--63538493 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
63538433 GAAGAACCAC
* * *
63538443 CAAAAATTATAAGGAAATATCAAAAA
1 CAAAAATTATAAGAAAAGACCAAAAA
63538469 CAAAAA-TATAAGAAAAGACCAAAAA
1 CAAAAATTATAAGAAAAGACCAAAAA
63538494 TTTTTTAGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.69, C:0.10, G:0.08, T:0.14
Consensus pattern (26 bp):
CAAAAATTATAAGAAAAGACCAAAAA
Found at i:63538969 original size:20 final size:20
Alignment explanation
Indices: 63538885--63538969 Score: 82
Period size: 20 Copynumber: 4.2 Consensus size: 20
63538875 AGAAAGTATG
* *
63538885 AAAAACTATAAGGAAATACC
1 AAAAATTATGAGGAAATACC
*
63538905 -AAGATTAATGAGGAAATACC
1 AAAAATT-ATGAGGAAATACC
* ** *
63538925 AAAACTTATGAGGATGTATC
1 AAAAATTATGAGGAAATACC
*
63538945 AAAAATTACGAGGAAATACC
1 AAAAATTATGAGGAAATACC
63538965 AAAAA
1 AAAAA
63538970 ATACAATAAA
Statistics
Matches: 50, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
19 4 0.08
20 42 0.84
21 4 0.08
ACGTcount: A:0.54, C:0.12, G:0.15, T:0.19
Consensus pattern (20 bp):
AAAAATTATGAGGAAATACC
Found at i:63539166 original size:19 final size:21
Alignment explanation
Indices: 63539134--63539179 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
63539124 AGATGTACAA
*
63539134 AAAAAATTACGAGAGAATA-T
1 AAAAAATTACGAGAAAATACT
*
63539154 AAAAAA-TATGAGAAAATACT
1 AAAAAATTACGAGAAAATACT
63539174 AAAAAA
1 AAAAAA
63539180 AAGTACTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.67, C:0.04, G:0.11, T:0.17
Consensus pattern (21 bp):
AAAAAATTACGAGAAAATACT
Found at i:63540525 original size:19 final size:18
Alignment explanation
Indices: 63540496--63540546 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 18
63540486 GTTTCAAGTT
63540496 TTTTTAATTAATAT-ATA
1 TTTTTAATTAATATCATA
63540513 TTTTTATATTTAAT-TCATA
1 TTTTTA-A-TTAATATCATA
63540532 TTTTTAATTAATATC
1 TTTTTAATTAATATC
63540547 TCTTTTATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 11 0.37
18 5 0.17
19 14 0.47
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTTAATTAATATCATA
Found at i:63540552 original size:17 final size:17
Alignment explanation
Indices: 63540496--63540552 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 17
63540486 GTTTCAAGTT
*
63540496 TTTTTAATTAATATATA
1 TTTTTAATTAATATCTA
63540513 TTTTTATATTTAAT-TCATA
1 TTTTTA-A-TTAATATC-TA
*
63540532 TTTTTAATTAATATCTC
1 TTTTTAATTAATATCTA
63540549 TTTT
1 TTTT
63540553 ATTCATAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
17 16 0.47
18 5 0.15
19 13 0.38
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTTAATTAATATCTA
Found at i:63541675 original size:31 final size:31
Alignment explanation
Indices: 63541638--63541697 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
63541628 TTTGTAGTCC
* *
63541638 AATTTGGTTCCTAAGCTTAACACTTTTTCCT
1 AATTTGGTACCTAAACTTAACACTTTTTCCT
*
63541669 AATTTGGTACCTAAACTTGACACTTTTTC
1 AATTTGGTACCTAAACTTAACACTTTTTC
63541698 TTAAGTGGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.25, C:0.22, G:0.10, T:0.43
Consensus pattern (31 bp):
AATTTGGTACCTAAACTTAACACTTTTTCCT
Found at i:63542257 original size:36 final size:35
Alignment explanation
Indices: 63542180--63542258 Score: 104
Period size: 35 Copynumber: 2.3 Consensus size: 35
63542170 TGCCAAGTAG
* * *
63542180 AAAAAAAAATGTCAAGTTCAGGTACCAAATTGGGC
1 AAAAAAAAATGTCAAGTTCAAGTAACAAATTGAGC
** *
63542215 CCAAAAAAATGTCAATTTCAAGTAACAAATTGAGC
1 AAAAAAAAATGTCAAGTTCAAGTAACAAATTGAGC
63542250 AAAAAAAAA
1 AAAAAAAAA
63542259 GTTTAGGTAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.19
Consensus pattern (35 bp):
AAAAAAAAATGTCAAGTTCAAGTAACAAATTGAGC
Found at i:63542949 original size:13 final size:13
Alignment explanation
Indices: 63542931--63542955 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63542921 TAAAAGAGAT
63542931 ATTAATTAAAAAA
1 ATTAATTAAAAAA
63542944 ATTAATTAAAAA
1 ATTAATTAAAAA
63542956 TAAAAATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAA
Found at i:63542963 original size:13 final size:14
Alignment explanation
Indices: 63542934--63542974 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
63542924 AAGAGATATT
*
63542934 AATTAAAAA-AATT
1 AATTAAAAATAATA
63542947 AATTAAAAATAA-A
1 AATTAAAAATAATA
63542960 AATTTAAAAATAATA
1 AA-TTAAAAATAATA
63542975 TATTTATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 11 0.46
14 12 0.50
15 1 0.04
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AATTAAAAATAATA
Found at i:63544209 original size:17 final size:19
Alignment explanation
Indices: 63544178--63544215 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
63544168 CGCTGCTATA
63544178 TTTTCTTTCAGTGTT-TTC
1 TTTTCTTTCAGTGTTCTTC
*
63544196 TTTT-TTTCATTGTTCTTC
1 TTTTCTTTCAGTGTTCTTC
63544214 TT
1 TT
63544216 CGACTATTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.05, C:0.16, G:0.08, T:0.71
Consensus pattern (19 bp):
TTTTCTTTCAGTGTTCTTC
Found at i:63548327 original size:16 final size:16
Alignment explanation
Indices: 63548302--63548334 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
63548292 ATTCAATTGA
63548302 TGCATAGGATTTTAAG
1 TGCATAGGATTTTAAG
*
63548318 TGCATTGGATTTTAAG
1 TGCATAGGATTTTAAG
63548334 T
1 T
63548335 CTAGATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.42
Consensus pattern (16 bp):
TGCATAGGATTTTAAG
Found at i:63552847 original size:48 final size:48
Alignment explanation
Indices: 63552791--63552888 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
63552781 TTTGAATCCA
63552791 TTTCCATTATCTACCATTAACTAGATAATAAAAGGATGTAATAATTTT
1 TTTCCATTATCTACCATTAACTAGATAATAAAAGGATGTAATAATTTT
* *
63552839 TTTCCATTATCTACCATTAACTAGATAATAAACGGATGTAGTAATTTT
1 TTTCCATTATCTACCATTAACTAGATAATAAAAGGATGTAATAATTTT
63552887 TT
1 TT
63552889 AATTAGTGTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.37, C:0.13, G:0.09, T:0.41
Consensus pattern (48 bp):
TTTCCATTATCTACCATTAACTAGATAATAAAAGGATGTAATAATTTT
Found at i:63558956 original size:44 final size:44
Alignment explanation
Indices: 63558907--63558997 Score: 137
Period size: 44 Copynumber: 2.1 Consensus size: 44
63558897 GTAGGTCAAA
*
63558907 TAATATTAAAAGAACATACACTAATTAGAGTTTAAATGGGAAAC
1 TAATATTAAAAGAACATACACTAATCAGAGTTTAAATGGGAAAC
* * * *
63558951 TAATATTAAAATAACCTACACTAATCAGAGTTTAAGTGGTAAAC
1 TAATATTAAAAGAACATACACTAATCAGAGTTTAAATGGGAAAC
63558995 TAA
1 TAA
63558998 AAACAAAGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.48, C:0.11, G:0.12, T:0.29
Consensus pattern (44 bp):
TAATATTAAAAGAACATACACTAATCAGAGTTTAAATGGGAAAC
Found at i:63561559 original size:23 final size:23
Alignment explanation
Indices: 63561541--63561587 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
63561531 TTCTTTGATC
63561541 AGATCTTTCAAAAGACTTTTCCT
1 AGATCTTTCAAAAGACTTTTCCT
*
63561564 ATATCTTTCAAAAGACTTTTCCT
1 AGATCTTTCAAAAGACTTTTCCT
63561587 A
1 A
63561588 AGTTTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.40
Consensus pattern (23 bp):
AGATCTTTCAAAAGACTTTTCCT
Found at i:63561986 original size:29 final size:29
Alignment explanation
Indices: 63561932--63561991 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 29
63561922 AACAATAAAT
*
63561932 TAAAAATAAAAATATGTGTTTAAAAATAA
1 TAAAAATAAAAATATGAGTTTAAAAATAA
*
63561961 TAAATAATAAAACATAT-AGTTTAAAATTAA
1 TAAA-AATAAAA-ATATGAGTTTAAAAATAA
63561991 T
1 T
63561992 TAAGAATGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 4 0.15
30 19 0.70
31 4 0.15
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (29 bp):
TAAAAATAAAAATATGAGTTTAAAAATAA
Found at i:63563109 original size:20 final size:20
Alignment explanation
Indices: 63563073--63563113 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
63563063 ATTTTAAAAG
*
63563073 AATATATTTTTATATTTTTA
1 AATATATTTTAATATTTTTA
63563093 AATA-ATTTTAATGATTTTTA
1 AATATATTTTAAT-ATTTTTA
63563113 A
1 A
63563114 TTTTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (20 bp):
AATATATTTTAATATTTTTA
Found at i:63575034 original size:26 final size:26
Alignment explanation
Indices: 63575005--63575149 Score: 96
Period size: 26 Copynumber: 5.5 Consensus size: 26
63574995 ACATAAAAAT
* * *
63575005 AAAATAATTATAATAGTAATATTAAC
1 AAAATAATAATAATAATAATAATAAC
*
63575031 AAAATAATAATAATAATAATAATAAT
1 AAAATAATAATAATAATAATAATAAC
* * * *
63575057 AAAATGATAACAATGATATTAATAA-
1 AAAATAATAATAATAATAATAATAAC
*
63575082 AATAATAGAAAATAATAATACATTAATAA-
1 AA-AATA-ATAATAATAATA-A-TAATAAC
* * ** * *
63575111 TATATGTTAATAACAATAATAATATAT
1 AAAATAATAATAATAATAATAATA-AC
63575138 AAAATAATAATA
1 AAAATAATAATA
63575150 TGGTAAAAAA
Statistics
Matches: 90, Mismatches: 23, Indels: 11
0.73 0.19 0.09
Matches are distributed among these distances:
25 7 0.08
26 48 0.53
27 26 0.29
28 2 0.02
29 7 0.08
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (26 bp):
AAAATAATAATAATAATAATAATAAC
Found at i:63575053 original size:29 final size:28
Alignment explanation
Indices: 63574998--63575165 Score: 104
Period size: 29 Copynumber: 5.5 Consensus size: 28
63574988 TAAATAAACA
* * *
63574998 TAAAAATAAAATAATTATAATAGTAATAT
1 TAAAAA-ATAATAATAATAATAATAATAT
*
63575027 TAACAAAATAATAATAATAATAATAATAA
1 TAA-AAAATAATAATAATAATAATAATAT
* * *
63575056 TAAAATGATAACAATGATATTAATAA-AATAA
1 TAAAA-AATAATAAT-A-A-TAATAATAATAT
* *
63575087 TAGAAAATAATAATACATTAATAATATATGT
1 TAAAAAATAATAATA-A-TAATAATA-ATAT
63575118 TAATAACAATAATAATATATAAAATAATAATAT
1 TAA-AA-AATAATAATA-AT--AATAATAATAT
63575151 GGTAAAAAATAATAA
1 --TAAAAAATAATAA
63575166 GAATGTATTA
Statistics
Matches: 111, Mismatches: 15, Indels: 22
0.75 0.10 0.15
Matches are distributed among these distances:
28 2 0.02
29 40 0.36
30 12 0.11
31 14 0.13
32 9 0.08
33 22 0.20
34 9 0.08
35 3 0.03
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (28 bp):
TAAAAAATAATAATAATAATAATAATAT
Found at i:63575132 original size:33 final size:33
Alignment explanation
Indices: 63575090--63575165 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
63575080 AAAATAATAG
* *
63575090 AAAATAATAATACAT-TAATAAT-ATATGTTAA
1 AAAATAATAATACATAAAATAATAATATGGTAA
*
63575121 TAACAATAATAATATATAAAATAATAATATGGTAA
1 -AA-AATAATAATACATAAAATAATAATATGGTAA
63575156 AAAATAATAA
1 AAAATAATAA
63575166 GAATGTATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
32 2 0.05
33 20 0.53
34 8 0.21
35 8 0.21
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.32
Consensus pattern (33 bp):
AAAATAATAATACATAAAATAATAATATGGTAA
Found at i:63575133 original size:22 final size:21
Alignment explanation
Indices: 63575097--63575137 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
63575087 TAGAAAATAA
*
63575097 TAATACATTAATAATATATGT
1 TAATACAATAATAATATATGT
63575118 TAATAACAATAATAATATAT
1 TAAT-ACAATAATAATATAT
63575138 AAAATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (21 bp):
TAATACAATAATAATATATGT
Found at i:63575165 original size:3 final size:3
Alignment explanation
Indices: 63574849--63575149 Score: 160
Period size: 3 Copynumber: 101.0 Consensus size: 3
63574839 TTTAAAAATG
* * * * *
63574849 ATA ATA GTA ATA AAA ATA AAA ATA ATA GTG ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
63574897 ATA ATA ATA ATA A-A A-A ATA GTA ATA ATA ATA CATTA ACT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -A-TA A-TA ATA ATA
* * * * * * * * *
63574942 AT- ATG TTA ATA ACA ATA A-A TTA ATG AT- TTA ATA A-C ATA ACA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
63574986 AGTAA ATA A-A CATA AAA ATA A-A ATA ATT ATA ATA GTA ATA TTA ACA
1 A-T-A ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
63575032 A-A ATA ATA ATA ATA ATA ATA ATA ATA A-A ATG ATA ACA ATG ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
63575078 ATA A-A ATA ATA GAAA ATA ATA ATA CATTA ATA ATA TATG TTA ATA ACA
1 ATA ATA ATA ATA -ATA ATA ATA ATA -A-TA ATA ATA -ATA ATA ATA ATA
63575126 ATA ATA ATA TATA A-A ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA
63575150 TGGTAAAAAA
Statistics
Matches: 222, Mismatches: 54, Indels: 44
0.69 0.17 0.14
Matches are distributed among these distances:
2 21 0.09
3 180 0.81
4 15 0.07
5 6 0.03
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:63575403 original size:3 final size:3
Alignment explanation
Indices: 63575389--63575487 Score: 59
Period size: 3 Copynumber: 34.7 Consensus size: 3
63575379 AAGTATACAC
* * *
63575389 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAG TAA TAT TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
63575435 -AA TACA AAA GAA -AA T-A TAA TAA AAA TAT TAA -AA TAA -AG TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
63575476 TAA -AA -AA TAA TA
1 TAA TAA TAA TAA TA
63575488 CTATATACAA
Statistics
Matches: 76, Mismatches: 12, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
2 13 0.17
3 58 0.76
4 5 0.07
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:63575440 original size:147 final size:148
Alignment explanation
Indices: 63575267--63575560 Score: 484
Period size: 148 Copynumber: 2.0 Consensus size: 148
63575257 ATAAGAGCGT
* * *
63575267 TAATAATAATAATAATATTGAGATACAAAAAGTAAATATAAT-AAAATATTAAAATAAAGTAATA
1 TAATAATAATAATAATATTAAAATAC-AAAAGAAAATATAATAAAAATATTAAAATAAAGTAATA
* *
63575331 AAGAATAAAACTATATA-TAAATATATATACATATACGTATATAATAAAAAGTATACACTAATAT
65 AAAAATAAAACTATATACAAAATATATATACATATACGTATATAATAAAAAGTATACACTAATAT
63575395 ATAATAATAATAATAATAA
130 ATAATAATAATAATAATAA
* *
63575414 TAATAATAGTAGTAATATTAAAATACAAAAGAAAATATAATAAAAATATTAAAATAAAGTAATAA
1 TAATAATAATAATAATATTAAAATACAAAAGAAAATATAATAAAAATATTAAAATAAAGTAATAA
* *
63575479 AAAATAATACTATATACAAAATATATATGCATATACGTATATAATAAAAAGTATACACTAATATA
66 AAAATAAAACTATATACAAAATATATATACATATACGTATATAATAAAAAGTATACACTAATATA
63575544 TAATAATAATAATAATA
131 TAATAATAATAATAATA
63575561 TTTAATAAAG
Statistics
Matches: 136, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
146 14 0.10
147 59 0.43
148 63 0.46
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.30
Consensus pattern (148 bp):
TAATAATAATAATAATATTAAAATACAAAAGAAAATATAATAAAAATATTAAAATAAAGTAATAA
AAAATAAAACTATATACAAAATATATATACATATACGTATATAATAAAAAGTATACACTAATATA
TAATAATAATAATAATAA
Found at i:63577481 original size:75 final size:76
Alignment explanation
Indices: 63577311--63577666 Score: 486
Period size: 75 Copynumber: 4.7 Consensus size: 76
63577301 AGAGACTAAA
* * *
63577311 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAAAAAACATAAATTGAAAATATCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG--AAAAACAGAAATTGAAAATACCT
* * **
63577376 CAGTGCGTGACTTG
63 CAGCGTGTGACCCG
* *
63577390 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTGAAAAACAG-GATT-AAAGATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA-ATACCTCA
63577453 GCGTGTGACCCG
65 GCGTGTGACCCG
* * *
63577465 AGGCTCAACTCACCTCTCGCAATATTAGTTGA-TTTTTGAAAAACAGAAATTAAAAATACCTCGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAG
*
63577529 CGTGTGACCTG
66 CGTGTGACCCG
**
63577540 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCTTGG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAG
63577604 CGTGTGACCCG
66 CGTGTGACCCG
* *
63577615 AGGCTCAACTCACATCTCGCAATATGAGTTAATTTTTTTGAAAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAAT
63577667 AAAAATATCA
Statistics
Matches: 252, Mismatches: 20, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
74 17 0.07
75 170 0.67
76 10 0.04
77 18 0.07
78 7 0.03
79 30 0.12
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (76 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAG
CGTGTGACCCG
Found at i:63586907 original size:26 final size:26
Alignment explanation
Indices: 63586877--63586927 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
63586867 ACCAATGAAC
*
63586877 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
63586903 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
63586928 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:63586967 original size:103 final size:104
Alignment explanation
Indices: 63586783--63587005 Score: 369
Period size: 103 Copynumber: 2.2 Consensus size: 104
63586773 AATGGATATC
63586783 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
63586848 GGATATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
63586887 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
63586951 GGATCA-CGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGAT-ATCGCACATAGCACCACCAATAAACCGGGGAATCA
**
63586990 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
63587006 TTTATATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
103 94 0.84
104 18 0.16
ACGTcount: A:0.31, C:0.32, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATATCGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:63587365 original size:29 final size:29
Alignment explanation
Indices: 63587332--63587395 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
63587322 TAATCCACCA
63587332 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
63587361 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
63587391 CCCAA
1 CCCAA
63587396 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:63587369 original size:30 final size:30
Alignment explanation
Indices: 63587339--63587395 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
63587329 CCACCCAACT
63587339 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
63587368 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
63587396 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:63594276 original size:26 final size:26
Alignment explanation
Indices: 63594240--63594292 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
63594230 CACCACTGAA
* *
63594240 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
63594266 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
63594292 T
1 T
63594293 TTCATTTCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.34, G:0.21, T:0.17
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:63594501 original size:103 final size:101
Alignment explanation
Indices: 63594318--63594535 Score: 357
Period size: 103 Copynumber: 2.1 Consensus size: 101
63594308 CAAGGATATC
63594318 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
* *
63594383 GATATCGCACTTAGCACCACCAATGAACCGGGAATCA
66 GATATCGCACATAGCACCACC-ATAAACCGGGAATCA
63594420 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
*
63594485 GGATCA-CGCACATAGCACCACCATAAATCGGGAATCA
65 GGAT-ATCGCACATAGCACCACCATAAACCGGGAATCA
**
63594522 GCACACAGCAACCC
1 GCACTTAGCAACCC
63594536 TTTATATACA
Statistics
Matches: 109, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
102 42 0.39
103 66 0.61
104 1 0.01
ACGTcount: A:0.32, C:0.32, G:0.18, T:0.18
Consensus pattern (101 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATATCGCACATAGCACCACCATAAACCGGGAATCA
Found at i:63594896 original size:29 final size:29
Alignment explanation
Indices: 63594863--63594926 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
63594853 TAATCCACCA
63594863 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
63594892 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
63594922 CCCAA
1 CCCAA
63594927 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:63594900 original size:30 final size:30
Alignment explanation
Indices: 63594870--63594926 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
63594860 CCACCCAACT
63594870 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
63594899 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
63594927 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:63597420 original size:15 final size:16
Alignment explanation
Indices: 63597400--63597433 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
63597390 GTTTTTATTT
63597400 AAAAACT-AAACTAAA
1 AAAAACTAAAACTAAA
63597415 AAAAACTAAAACTAAA
1 AAAAACTAAAACTAAA
63597431 AAA
1 AAA
63597434 CATAGATCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (16 bp):
AAAAACTAAAACTAAA
Found at i:63599728 original size:11 final size:10
Alignment explanation
Indices: 63599699--63599746 Score: 55
Period size: 11 Copynumber: 4.8 Consensus size: 10
63599689 ACGATGCTAG
*
63599699 TTAACAATAA
1 TTAATAATAA
63599709 -TAA-AATAA
1 TTAATAATAA
63599717 TTAAATAATAA
1 TT-AATAATAA
63599728 TTAATAACTAA
1 TTAATAA-TAA
63599739 TTAATAAT
1 TTAATAAT
63599747 TCTTTAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
8 5 0.15
9 4 0.12
10 8 0.24
11 17 0.50
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
TTAATAATAA
Found at i:63599733 original size:18 final size:18
Alignment explanation
Indices: 63599704--63599747 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
63599694 GCTAGTTAAC
*
63599704 AATAATAA--AATAATTA
1 AATAATAATTAATAACTA
63599720 AATAATAATTAATAACTA
1 AATAATAATTAATAACTA
*
63599738 ATTAATAATT
1 AATAATAATT
63599748 CTTTAAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 8 0.33
18 16 0.67
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATAATAATTAATAACTA
Found at i:63601391 original size:19 final size:19
Alignment explanation
Indices: 63601369--63601420 Score: 58
Period size: 17 Copynumber: 2.9 Consensus size: 19
63601359 GTTATGTTTT
*
63601369 TATTATTATGTGTATATTA
1 TATTATTATGTATATATTA
*
63601388 TATT-TT-TATATAT-TTA
1 TATTATTATGTATATATTA
63601404 TATTATTA-GTATATATT
1 TATTATTATGTATATATT
63601421 TTTAATTACT
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
16 7 0.26
17 12 0.44
18 4 0.15
19 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.62
Consensus pattern (19 bp):
TATTATTATGTATATATTA
Found at i:63601421 original size:19 final size:19
Alignment explanation
Indices: 63601369--63601421 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
63601359 GTTATGTTTT
*
63601369 TATTATTATGTGTATA-TTA
1 TATTATTA-GTATATATTTA
63601388 TATT-TT--TATATATTTA
1 TATTATTAGTATATATTTA
63601404 TATTATTAGTATATATTT
1 TATTATTAGTATATATTT
63601422 TTAATTACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
15 5 0.17
16 7 0.24
17 2 0.07
18 2 0.07
19 13 0.45
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (19 bp):
TATTATTAGTATATATTTA
Found at i:63602457 original size:17 final size:18
Alignment explanation
Indices: 63602430--63602463 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
63602420 TTAGATCAAG
63602430 TTTATAGTTTTAGTTTTT
1 TTTATAGTTTTAGTTTTT
63602448 TTTA-AGTTTTAGTTTT
1 TTTATAGTTTTAGTTTT
63602464 AAATAAAACG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.18, C:0.00, G:0.12, T:0.71
Consensus pattern (18 bp):
TTTATAGTTTTAGTTTTT
Found at i:63612115 original size:210 final size:210
Alignment explanation
Indices: 63611562--63612624 Score: 1587
Period size: 210 Copynumber: 5.1 Consensus size: 210
63611552 GAAGAAGAAA
63611562 TGAAGCCA-ATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAACAGATCGAAGATAT
1 TGAAG-CAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAACAGATCGAAGATAT
*
63611626 AGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGAATTG
65 AGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTG
** * *
63611691 TCAGAGAATGAATCGAAGTTTGGCATCTT-CACTTTGATGG-AGAGCAGACACATAGCAGATCTG
130 TCAGAGAACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGAAG-GCAGACACATAGCAGATCTT
63611754 ACCTTCAGATGTTTATGC
193 ACCTTCAGATGTTTATGC
* * *** * * *
63611772 TGAAGCGGATCCAAGATG---G-T-TTGGCATC-CT-TGTGTT-TACAAGGAACAAATCGAAGAC
1 TGAAGCAGATCCAAGATGACAGATCTT---ATCTCTCTGTATTCGGTAGGGAACAGATCGAAGAT
* *
63611829 ATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAACAAATCTAAGATGATTTGTCGTCTCTGTAT
63 ATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTAT
*
63611894 TGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAAACACATAGCAGATCTT
128 TGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTT
*
63611959 ACCTTCAGATGTTTACGC
193 ACCTTCAGATGTTTATGC
*
63611977 TGAAGCAGATCCAAGATGACAGATCTTATCTC-CATGTATTCGGTAGGGAGCAGATCGAAGATAT
1 TGAAGCAGATCCAAGATGACAGATCTTATCTCTC-TGTATTCGGTAGGGAACAGATCGAAGATAT
* * *
63612041 AGCTGATTTGGCTTTCATGTGTTTACGATGAAGCAAATCTAAGATGATTTATCGTCTTTGTATTG
65 AGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTG
63612106 TCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTAC
130 TCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTAC
63612171 CTTCAGATGTTTATGC
195 CTTCAGATGTTTATGC
* * *
63612187 TGAAGTAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGCAGGGAGCAGATCGAAGATATA
1 TGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAACAGATCGAAGATATA
* **
63612252 GCTGATTTGGCTTTCATGTGTTTTTGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGT
66 GCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGT
*
63612317 CAGAGAAAAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACC
131 CAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACC
* *
63612382 CTCAGATGTTTACGC
196 TTCAGATGTTTATGC
63612397 TGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAACAGATCGAAGATATA
1 TGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAACAGATCGAAGATATA
* *
63612462 GCTGATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTAT
66 GCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGT
** * * *
63612527 CAGAGAATGAATCAAAGTTTGGCATCTT-CACTTTGATGG-AGAGCAGACACATAGCAGATCTTG
131 CAGAGAACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGAAG-GCAGACACATAGCAGATCTTA
*
63612590 CCTTCGGATGTTTATGC
194 CCTTCAGATGTTTATGC
* *
63612607 TAAAGCGGATCCAAGATG
1 TGAAGCAGATCCAAGATG
63612625 GTTTGGCATC
Statistics
Matches: 777, Mismatches: 58, Indels: 36
0.89 0.07 0.04
Matches are distributed among these distances:
204 2 0.00
205 167 0.21
206 8 0.01
207 6 0.01
208 5 0.01
209 9 0.01
210 577 0.74
211 3 0.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (210 bp):
TGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAACAGATCGAAGATATA
GCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGT
CAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTTACC
TTCAGATGTTTATGC
Found at i:63612423 original size:420 final size:413
Alignment explanation
Indices: 63611562--63612747 Score: 1742
Period size: 420 Copynumber: 2.8 Consensus size: 413
63611552 GAAGAAGAAA
63611562 TGAAGCCA-ATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAACAGATCGAAGATAT
1 TGAAG-CAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAACAGATCGAAGATAT
*
63611626 AGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGAATTG
65 AGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTG
*
63611691 TCAGAGAATGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTGAC
130 TCAGAGAATGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTTAC
* *
63611756 CTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAACAAA
195 CTTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTT-G-ATCCTTGTATTGACAAGGAACAAA
*
63611821 TCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAACAAATCTAAGATGATTTGTCGT
258 TCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGT
*
63611886 CTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAAACACATAG
323 CTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAAACACATAG
*
63611951 CAGATCTTACCTTCAGATGTTTACGC
388 CAGATCTTACCCTCAGATGTTTACGC
*
63611977 TGAAGCAGATCCAAGATGACAGATCTTATCTC-CATGTATTCGGTAGGGAGCAGATCGAAGATAT
1 TGAAGCAGATCCAAGATGACAGATCTTATCTCTC-TGTATTCGGTAGGGAACAGATCGAAGATAT
* * *
63612041 AGCTGATTTGGCTTTCATGTGTTTACGATGAAGCAAATCTAAGATGATTTATCGTCTTTGTATTG
65 AGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTG
** *
63612106 TCAGAGAACAAATCGAAGTCTGGCAT-TTCCACTTTGATGGA-AGGCAGACACATAGCAGATCTT
130 TCAGAGAATGAATCGAAGTTTGGCATCTT-CACTTTGATGGAGA-GCAGACACATAGCAGATCTT
** * *
63612169 ACCTTCAGATGTTTATGCTGAAGTAGATCCAAGATGACAGATCTT-ATCTCTCTGTATTCGGCAG
193 ACCTTCAGATGTTTATGCTGAAGCGGATCCAAGATG---G-T-TTGATC-CT-TGTATT-GACAA
* * * * ** *
63612233 GGAGCAGATCGAAGATATAGCTGATTTGGCTTTCATGTGTTTTTGATGAAGCAAATCTAAGATGA
250 GGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGA
*
63612298 TTTGTCGTCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAG
315 TTTGTCGTCTCTGTATTGTCAGAGAAAAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAA
63612363 ACACATAGCAGATCTTACCCTCAGATGTTTACGC
380 ACACATAGCAGATCTTACCCTCAGATGTTTACGC
63612397 TGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAACAGATCGAAGATATA
1 TGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAACAGATCGAAGATATA
* *
63612462 GCTGATTTGGCTTTCACGTGTTTTCGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTAT
66 GCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGT
* *
63612527 CAGAGAATGAATCAAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTTGCC
131 CAGAGAATGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTTACC
* * * *
63612592 TTCGGATGTTTATGCTAAAGCGGATCCAAGATGGTTTGGCATCCTTATGCTT-ACAAGGAGA-AA
196 TTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTT-G-ATCCTTGT-ATTGACAAGGA-ACAA
* * * * * * *
63612655 ATCGAA-TCATAGTTGATTTGGCTTTCACGTGCTTAAG-TTAAAGCAAATCAAAGATGATTTGGC
257 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAA-CAAATCTAAGATGATTTGTC
* * *
63612718 ATCTCTGTATTGTCAGGGAACAAATCGAAG
321 GTCTCTGTATTGTCAGAGAAAAAATCGAAG
63612748 AAGCAGATTT
Statistics
Matches: 689, Mismatches: 61, Indels: 43
0.87 0.08 0.05
Matches are distributed among these distances:
413 3 0.00
414 75 0.11
415 221 0.32
416 3 0.00
417 8 0.01
418 6 0.01
419 6 0.01
420 363 0.53
421 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (413 bp):
TGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCGGTAGGGAACAGATCGAAGATATA
GCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGT
CAGAGAATGAATCGAAGTTTGGCATCTTCACTTTGATGGAGAGCAGACACATAGCAGATCTTACC
TTCAGATGTTTATGCTGAAGCGGATCCAAGATGGTTTGATCCTTGTATTGACAAGGAACAAATCG
AAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAACAAATCTAAGATGATTTGTCGTCTC
TGTATTGTCAGAGAAAAAATCGAAGTCTGGCATTTCCACTTTGATGGAAGGCAAACACATAGCAG
ATCTTACCCTCAGATGTTTACGC
Found at i:63612916 original size:44 final size:45
Alignment explanation
Indices: 63612841--63612925 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
63612831 GAAGAAGCAA
* * *
63612841 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAATAG
1 ATTTGACGTCTCTGTAGTAGACGGGGAGCAGATCAAAGATAATAG
63612886 ATTTGACGTCTCTGTAGTAGACGGGG-GCAGATCAAAGATA
1 ATTTGACGTCTCTGTAGTAGACGGGGAGCAGATCAAAGATA
63612926 GCAGATATCG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 13 0.35
45 24 0.65
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (45 bp):
ATTTGACGTCTCTGTAGTAGACGGGGAGCAGATCAAAGATAATAG
Found at i:63614194 original size:39 final size:38
Alignment explanation
Indices: 63614150--63614298 Score: 174
Period size: 39 Copynumber: 3.9 Consensus size: 38
63614140 ATAAAGTATG
*
63614150 GTTTTAATTAATAATAAAACAAAATAGTATGAGGAAGTA
1 GTTTTAATTAACAATAAAACAAAATAGTATG-GGAAGTA
* *
63614189 GTTTTAATTAACAATAAAACAAAATTGTATGGGAAAATA
1 GTTTTAATTAACAATAAAACAAAATAGTATGGG-AAGTA
* *
63614228 GTTTTAATTAACAATAAAACAAAATAGCATGGGGAGT-
1 GTTTTAATTAACAATAAAACAAAATAGTATGGGAAGTA
* * * * *
63614265 GTTTTTGATTAATAATAAAATAAAGTAGCATGGG
1 G-TTTTAATTAACAATAAAACAAAATAGTATGGG
63614299 GGAGTGGAAT
Statistics
Matches: 97, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
37 1 0.01
38 32 0.33
39 64 0.66
ACGTcount: A:0.48, C:0.05, G:0.17, T:0.31
Consensus pattern (38 bp):
GTTTTAATTAACAATAAAACAAAATAGTATGGGAAGTA
Found at i:63614840 original size:22 final size:22
Alignment explanation
Indices: 63614815--63614866 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 22
63614805 CCATGTAAAT
63614815 ATTTTAATATTATAT-TATATAC
1 ATTTTAATATTATATATATAT-C
63614837 ATTTT-ATA-TATATATATATC
1 ATTTTAATATTATATATATATC
63614857 -TTTTAATATT
1 ATTTTAATATT
63614867 GATTTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
19 4 0.15
20 9 0.33
21 9 0.33
22 5 0.19
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTTTAATATTATATATATATC
Found at i:63614854 original size:21 final size:22
Alignment explanation
Indices: 63614815--63614866 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 22
63614805 CCATGTAAAT
63614815 ATTTTAATATTATATTATATAC
1 ATTTTAATATTATATTATATAC
63614837 ATTTT-ATA-TATA-TATATATC
1 ATTTTAATATTATATTATATA-C
63614857 -TTTTAATATT
1 ATTTTAATATT
63614867 GATTTTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
19 10 0.37
20 8 0.30
21 4 0.15
22 5 0.19
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTTTAATATTATATTATATAC
Found at i:63615109 original size:20 final size:23
Alignment explanation
Indices: 63615061--63615113 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 23
63615051 ATTTACCTTC
*
63615061 AATATTATATATCGTATATTTCT
1 AATATTATATATCGTATATTACT
63615084 AATATTAT-TA-CGT-TATTACT
1 AATATTATATATCGTATATTACT
*
63615104 ACTATTATAT
1 AATATTATAT
63615114 TATTATTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 13 0.48
21 4 0.15
22 2 0.07
23 8 0.30
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (23 bp):
AATATTATATATCGTATATTACT
Found at i:63615969 original size:21 final size:19
Alignment explanation
Indices: 63615931--63615969 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
63615921 ACTCCCGTTT
*
63615931 TCATTTTTAAAATCGATTC
1 TCATTTTCAAAATCGATTC
63615950 TCATTTTCCAAAACTCGATT
1 TCATTTT-CAAAA-TCGATT
63615970 TGAAAATGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 4 0.24
21 6 0.35
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.44
Consensus pattern (19 bp):
TCATTTTCAAAATCGATTC
Found at i:63618774 original size:51 final size:49
Alignment explanation
Indices: 63618648--63618789 Score: 205
Period size: 49 Copynumber: 2.9 Consensus size: 49
63618638 CGAAGCTATC
* *
63618648 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTT
* * *
63618697 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTT
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAG-TT
63618746 TCGGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
1 T--GGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
63618790 TCTCAATAGA
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
48 4 0.05
49 40 0.49
51 38 0.46
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAGTT
Found at i:63621657 original size:42 final size:42
Alignment explanation
Indices: 63621538--63621664 Score: 155
Period size: 42 Copynumber: 3.0 Consensus size: 42
63621528 TACACAGTAG
* *
63621538 CATACCAATGCCATATCCCAAATATGGTCTTACATGAAATCT
1 CATATCAATGCCATATCCCAAATATGGTCTTACACGAAATCT
* ** *
63621580 CATATCAATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCT
1 CATATCAATGCC-ATATCCCAAATATGGTCTTACACGAAATCT
* * * *
63621623 CGTATCGATGCCATATCCCATATATGGTCTTACACGTAATCT
1 CATATCAATGCCATATCCCAAATATGGTCTTACACGAAATCT
63621665 TAGTACCCCT
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 36 0.51
43 35 0.49
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAAATATGGTCTTACACGAAATCT
Found at i:63645586 original size:28 final size:28
Alignment explanation
Indices: 63645526--63645578 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
63645516 AAAATAATTA
**
63645526 AAATTAAATATTTTAATAATTTGAGTTC
1 AAATTAAATATTTTAATAATTAAAGTTC
63645554 AAATTAAATATTTT-ATAATTAAAGT
1 AAATTAAATATTTTAATAATTAAAGT
63645579 ATGAAATTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (28 bp):
AAATTAAATATTTTAATAATTAAAGTTC
Found at i:63646824 original size:106 final size:106
Alignment explanation
Indices: 63646639--63646851 Score: 426
Period size: 106 Copynumber: 2.0 Consensus size: 106
63646629 AAACTTTAGT
63646639 AAGAGTAACATTTATGTCATAGTTCAACTAACATAGCAATTATTGAGATAATAGAACTTTATTTA
1 AAGAGTAACATTTATGTCATAGTTCAACTAACATAGCAATTATTGAGATAATAGAACTTTATTTA
63646704 TACTAAAGTTTAGCATAATTAAAAAATATTCAAATTTTTGA
66 TACTAAAGTTTAGCATAATTAAAAAATATTCAAATTTTTGA
63646745 AAGAGTAACATTTATGTCATAGTTCAACTAACATAGCAATTATTGAGATAATAGAACTTTATTTA
1 AAGAGTAACATTTATGTCATAGTTCAACTAACATAGCAATTATTGAGATAATAGAACTTTATTTA
63646810 TACTAAAGTTTAGCATAATTAAAAAATATTCAAATTTTTGA
66 TACTAAAGTTTAGCATAATTAAAAAATATTCAAATTTTTGA
63646851 A
1 A
63646852 CAGAATATAA
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 107 1.00
ACGTcount: A:0.44, C:0.09, G:0.10, T:0.37
Consensus pattern (106 bp):
AAGAGTAACATTTATGTCATAGTTCAACTAACATAGCAATTATTGAGATAATAGAACTTTATTTA
TACTAAAGTTTAGCATAATTAAAAAATATTCAAATTTTTGA
Found at i:63647885 original size:15 final size:16
Alignment explanation
Indices: 63647858--63647887 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
63647848 AATAAAAATT
63647858 AATATATATTATATAA
1 AATATATATTATATAA
63647874 AATATA-ATTATATA
1 AATATATATTATATA
63647888 TTAGTTGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATATATTATATAA
Found at i:63655679 original size:46 final size:47
Alignment explanation
Indices: 63655616--63655781 Score: 192
Period size: 46 Copynumber: 3.4 Consensus size: 47
63655606 GCATAGTAGC
* *
63655616 CTGCACATAGTACTACACATGCGACCAATTAT-TCGGTACACGTAGTA
1 CTGCACTTAGTACTACACACGCGACCAATTATCT-GGTACACGTAGTA
*
63655663 -TGCACTTAGTACTACACACGTGACCAATTATCTGGTACACGTAGTA
1 CTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACGTAGTA
* ** *
63655709 GCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTA
1 --CTGCACTTAGTACTACACACGCGACC-AATTATCTGGTACACGTAGTA
*
63655759 GCCTGCACCTAGTACTACACACG
1 --CTGCACTTAGTACTACACACG
63655782 TGATCACAGT
Statistics
Matches: 107, Mismatches: 7, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
46 41 0.38
47 1 0.01
49 25 0.23
50 40 0.37
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (47 bp):
CTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACGTAGTA
Found at i:63655772 original size:50 final size:49
Alignment explanation
Indices: 63655596--63655830 Score: 255
Period size: 50 Copynumber: 4.8 Consensus size: 49
63655586 TAGCCAAAGC
* * * *
63655596 TATCTGGTA-AGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACA-CGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
63655645 TAT-TCGGTACACGTAGTA---TGCACTTAGTACTACACACGTGACCAAT
1 TATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
63655691 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * *
63655741 CATCTGATACACGTAGTAGCCTGCACCTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* ** * * *
63655792 TTTAGGGTACGCATAGTAGCCTGCACTAAGTACTACACA
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
63655831 TGCGATCTCA
Statistics
Matches: 158, Mismatches: 19, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
46 41 0.26
47 1 0.01
48 1 0.01
49 38 0.24
50 44 0.28
51 32 0.20
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:63670099 original size:88 final size:88
Alignment explanation
Indices: 63669950--63670115 Score: 262
Period size: 88 Copynumber: 1.9 Consensus size: 88
63669940 TCACTCATCT
*
63669950 CCATAAACAATCTAAGGTGAAGGTGAGGATCCTTAGTTGGCATTCTACTGAATTGACCCACTAAA
1 CCATAAACAATCTAAGGTGAAGGTGAGGATCCTTAGTTGGCATTCTACTAAATTGACCCACTAAA
*
63670015 TGAAGCTTCAGGAGCAAGTTGCC
66 TGAAGCATCAGGAGCAAGTTGCC
* * **
63670038 CCATAATCAATCTGAGGTGAAGGTGAGGATCCTTAGTTGGCATTCTACTAAATT-AGCCCACTGT
1 CCATAAACAATCTAAGGTGAAGGTGAGGATCCTTAGTTGGCATTCTACTAAATTGA-CCCACTAA
63670102 ATGAAGCATCAGGA
65 ATGAAGCATCAGGA
63670116 ACATGACTGG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
87 1 0.01
88 70 0.99
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (88 bp):
CCATAAACAATCTAAGGTGAAGGTGAGGATCCTTAGTTGGCATTCTACTAAATTGACCCACTAAA
TGAAGCATCAGGAGCAAGTTGCC
Found at i:63674132 original size:23 final size:22
Alignment explanation
Indices: 63674063--63674160 Score: 92
Period size: 21 Copynumber: 4.5 Consensus size: 22
63674053 CCTGATCAGT
** *
63674063 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
* *
63674084 AAACGACACACGAGGTGCTTG-
1 ATACGACACACGAGGTGCCTGA
*
63674105 CTACGACACACGAGGTGCCTGA
1 ATACGACACACGAGGTGCCTGA
* *
63674127 TATACGACACACAAGGTGCCTAAA
1 -ATACGACACACGAGGTGCCT-GA
63674151 ATACGACACA
1 ATACGACACA
63674161 TAAAGTGCCT
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
21 33 0.53
23 28 0.45
24 1 0.02
ACGTcount: A:0.38, C:0.27, G:0.20, T:0.15
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:63674168 original size:23 final size:22
Alignment explanation
Indices: 63674063--63674170 Score: 94
Period size: 23 Copynumber: 4.9 Consensus size: 22
63674053 CCTGATCAGT
* *
63674063 ATACGACACATAAAGTGCCTAA
1 ATACGACACACAAGGTGCCTAA
* **
63674085 A-ACGACACACGAGGTG-CTTG
1 ATACGACACACAAGGTGCCTAA
* * *
63674105 CTACGACACACGAGGTGCCTGAT
1 ATACGACACACAAGGTGCCT-AA
63674128 ATACGACACACAAGGTGCCTAAA
1 ATACGACACACAAGGTGCCT-AA
* *
63674151 ATACGACACATAAAGTGCCT
1 ATACGACACACAAGGTGCCT
63674171 GATCGATAAA
Statistics
Matches: 69, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
20 2 0.03
21 27 0.39
22 3 0.04
23 37 0.54
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (22 bp):
ATACGACACACAAGGTGCCTAA
Found at i:63674569 original size:15 final size:15
Alignment explanation
Indices: 63674544--63674601 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
63674534 TCATATATAT
63674544 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
63674560 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
63674575 AATAATTTCAATCAA
1 TATAAATTCAATCAA
63674590 TATAAATTCAAT
1 TATAAATTCAAT
63674602 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:63680475 original size:21 final size:22
Alignment explanation
Indices: 63680461--63680544 Score: 91
Period size: 23 Copynumber: 3.8 Consensus size: 22
63680451 GACACATAAA
63680461 GTGCCT-AAAACGACACACGAG
1 GTGCCTAAAAACGACACACGAG
***
63680482 GTGCCT-GCTACGACACACGAG
1 GTGCCTAAAAACGACACACGAG
* *
63680503 GTGCCTGATATACGACACACGAG
1 GTGCCT-AAAAACGACACACGAG
63680526 GTGCCTAAAATACGACACA
1 GTGCCTAAAA-ACGACACA
63680545 TAAAGTGCCT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
21 24 0.45
22 2 0.04
23 27 0.51
ACGTcount: A:0.33, C:0.29, G:0.24, T:0.14
Consensus pattern (22 bp):
GTGCCTAAAAACGACACACGAG
Found at i:63680554 original size:23 final size:22
Alignment explanation
Indices: 63680447--63680544 Score: 110
Period size: 21 Copynumber: 4.5 Consensus size: 22
63680437 CCTGATCAGT
** *
63680447 ATACGACACATAAAGTGCCTAA
1 ATACGACACACGAGGTGCCTAA
*
63680469 A-ACGACACACGAGGTGCCT-G
1 ATACGACACACGAGGTGCCTAA
* *
63680489 CTACGACACACGAGGTGCCTGAT
1 ATACGACACACGAGGTGCCT-AA
63680512 ATACGACACACGAGGTGCCTAAA
1 ATACGACACACGAGGTGCCT-AA
63680535 ATACGACACA
1 ATACGACACA
63680545 TAAAGTGCCT
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
21 33 0.52
22 1 0.02
23 30 0.47
ACGTcount: A:0.37, C:0.28, G:0.21, T:0.14
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTAA
Found at i:63683016 original size:13 final size:13
Alignment explanation
Indices: 63682998--63683022 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63682988 ATAGATGAAG
63682998 GATTGGTAAAGGT
1 GATTGGTAAAGGT
63683011 GATTGGTAAAGG
1 GATTGGTAAAGG
63683023 ATTGGTACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.40, T:0.28
Consensus pattern (13 bp):
GATTGGTAAAGGT
Found at i:63683025 original size:11 final size:11
Alignment explanation
Indices: 63682995--63683029 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
63682985 ATGATAGATG
63682995 AAGGATTGGTA
1 AAGGATTGGTA
63683006 AAGGTGATTGGTA
1 AA-G-GATTGGTA
63683019 AAGGATTGGTA
1 AAGGATTGGTA
63683030 CCCATGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 10 0.45
12 2 0.09
13 10 0.45
ACGTcount: A:0.34, C:0.00, G:0.37, T:0.29
Consensus pattern (11 bp):
AAGGATTGGTA
Found at i:63687102 original size:34 final size:35
Alignment explanation
Indices: 63687044--63687115 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
63687034 CGTATCCTAG
*
63687044 CTACAGTCTCAGTCTTCTAAAGTTTTCAGT-TTTCC
1 CTACAGTCTCAGTCTTCTAAAG-TTTCAGTATTACC
* *
63687079 CTACTGTCTCAGT-TTCTATAGTTTCAGTATTACC
1 CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
63687113 CTA
1 CTA
63687116 ACTATAGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 7 0.21
34 14 0.42
35 12 0.36
ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43
Consensus pattern (35 bp):
CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
Found at i:63688233 original size:60 final size:60
Alignment explanation
Indices: 63688090--63688236 Score: 140
Period size: 60 Copynumber: 2.5 Consensus size: 60
63688080 ATTCAAAAAT
* * *
63688090 CAGAGTTA-ATTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTA
1 CAGAGTTATATTGGGCCTT-GCCCATATCAATATCAATATGGGCCATAGCCCATTACAGTA
* ** * * * *
63688150 CCAGAG-TATACTGTTCCTAGCCCATGTCAGTATCAATATGGGTCATAGCCCTATTACAAGT-
1 -CAGAGTTATATTGGGCCTTGCCCATATCAATATCAATATGGGCCATAGCCC-ATTAC-AGTA
63688211 C-GAGTTATATTGGGCCTTGCCCATAT
1 CAGAGTTATATTGGGCCTTGCCCATAT
63688237 TAACACAGTT
Statistics
Matches: 67, Mismatches: 15, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
59 3 0.04
60 46 0.69
61 15 0.22
62 3 0.04
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (60 bp):
CAGAGTTATATTGGGCCTTGCCCATATCAATATCAATATGGGCCATAGCCCATTACAGTA
Found at i:63688509 original size:80 final size:81
Alignment explanation
Indices: 63688368--63688528 Score: 306
Period size: 80 Copynumber: 2.0 Consensus size: 81
63688358 CCCTACACTT
63688368 ACAGTGTTAGCACCAGTTGCGGCACTAACTATAATCCGCAGCAAAGCTGCTTATATCAGAATATG
1 ACAGTGTTAGCACCAGTTGCGGCACTAACTATAATCCGCAGCAAAGCTGCTTATATCAGAATATG
63688433 TGGCACAGCCACCAGA
66 TGGCACAGCCACCAGA
*
63688449 ACAG-GTTAGCACCAGTTGCGGCACTAACTATAATCCGCAGCAAAGCTGCTTATATTAGAATATG
1 ACAGTGTTAGCACCAGTTGCGGCACTAACTATAATCCGCAGCAAAGCTGCTTATATCAGAATATG
63688513 TGGCACAGCCACCAGA
66 TGGCACAGCCACCAGA
63688529 GCGGGTTCTT
Statistics
Matches: 79, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
80 75 0.95
81 4 0.05
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (81 bp):
ACAGTGTTAGCACCAGTTGCGGCACTAACTATAATCCGCAGCAAAGCTGCTTATATCAGAATATG
TGGCACAGCCACCAGA
Found at i:63688706 original size:28 final size:27
Alignment explanation
Indices: 63688680--63688734 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
63688670 TAAACTTATC
* *
63688680 TCTT-CAGGGGTATTACTGTAATTTTA
1 TCTTACAGAGGTATTACAGTAATTTTA
*
63688706 TCTTACAGAGGTATTTCAGTAATTTTA
1 TCTTACAGAGGTATTACAGTAATTTTA
63688733 TC
1 TC
63688735 AGTCTTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.25, C:0.13, G:0.16, T:0.45
Consensus pattern (27 bp):
TCTTACAGAGGTATTACAGTAATTTTA
Found at i:63697309 original size:40 final size:40
Alignment explanation
Indices: 63697212--63697400 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
63697202 GATGATAACT
* * * * * **
63697212 GGGCTAAGTCCCAAAGGCATCTGCGCTAGTGACTAGTTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
63697252 GGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
63697291 GGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
63697331 GGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAATCC
* *
63697371 GGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
63697401 AGCTATATCC
Statistics
Matches: 133, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 32 0.24
40 99 0.74
41 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.23
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:63702658 original size:25 final size:25
Alignment explanation
Indices: 63702629--63702676 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63702619 TTATAATATG
** *
63702629 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
63702654 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
63702677 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:63702835 original size:25 final size:24
Alignment explanation
Indices: 63702807--63702901 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 24
63702797 GAGGAAGGGC
*
63702807 AAAAGGGCTATGCCCCAGTTTACTG
1 AAAAGGGCTATGCCCCAGTTTA-TA
*
63702832 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTAT-A
* * *
63702857 AAAAGAGCTTTGCCCCAG-TTATT
1 AAAAGGGCTATGCCCCAGTTTATA
*
63702880 AAAAGAGGCTAGGCCTCCAGTT
1 AAAAG-GGCTATGCC-CCAGTT
63702902 ATATGATAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
23 5 0.08
24 11 0.19
25 42 0.71
26 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTATGCCCCAGTTTATA
Found at i:63702883 original size:24 final size:25
Alignment explanation
Indices: 63702807--63702883 Score: 102
Period size: 25 Copynumber: 3.1 Consensus size: 25
63702797 GAGGAAGGGC
* * *
63702807 AAAAGGGCTATGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTATTA
*
63702832 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATTA
*
63702857 AAAAGAGCTTTGCCCCAG-TTATTA
1 AAAAGGGCTTTGCCCCAGTTTATTA
63702881 AAA
1 AAA
63702884 GAGGCTAGGC
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 8 0.17
25 38 0.83
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTA
Found at i:63702900 original size:50 final size:50
Alignment explanation
Indices: 63702807--63702901 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
63702797 GAGGAAGGGC
* **
63702807 AAAAGGGCTATGCCCCAGTTTACTGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGAGCTATGCCCCAGTTTACTGAAAAGGGCTAGGCCCCAGTTTATCA
* *
63702857 AAAAGAGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGAGCTATGCCCCAGTTTACTGAAAAG-GGCTAGGCC-CCAGTT
63702902 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 6 0.16
49 10 0.26
50 22 0.58
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.25
Consensus pattern (50 bp):
AAAAGAGCTATGCCCCAGTTTACTGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:63703133 original size:31 final size:31
Alignment explanation
Indices: 63703098--63703236 Score: 215
Period size: 31 Copynumber: 4.5 Consensus size: 31
63703088 CGTTTGCAGT
*
63703098 AAAGGCTTCGGCCCAGTGATATGAACAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
63703129 AAAGGCTTCGGCCCAGCGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
63703160 AAAGGCTTCAGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * * *
63703191 AAAGGCTTCGGCCTAGTGACATGGATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
63703222 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
63703237 ATATATGCTG
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 98 1.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:63712291 original size:92 final size:92
Alignment explanation
Indices: 63712163--63712403 Score: 320
Period size: 92 Copynumber: 2.6 Consensus size: 92
63712153 TCAGATAGTA
* * ** * *
63712163 GTACGTAGAGTAGCTAACATACATGTGGTATGGTGCAATGTGGTAATCCGCTATACCGATAGGTT
1 GTACGTAGTGTAGCTAACATACATGCGGTACAGTGCAATGCGGTAATCCGCTATACCAATAGGTT
* *
63712228 GTAGTAAAACTGCCAGTTCAGTCAAAT
66 GCAGTAAAACTGCCAGTTCAGTCAAAG
* ** *
63712255 GTACGCAGTGTAGCTAATGTACATGCGGTACAGTGCAATGCGGTAATTCGCTATACCAATAGGTT
1 GTACGTAGTGTAGCTAACATACATGCGGTACAGTGCAATGCGGTAATCCGCTATACCAATAGGTT
63712320 GCAGTAAAACTGCCAGTTCAGTCAAAG
66 GCAGTAAAACTGCCAGTTCAGTCAAAG
* * * ** *
63712347 GTACGTAGTGTAGCTGACATACATGCAGTACAGTGCAATACGACAATCCACTATACC
1 GTACGTAGTGTAGCTAACATACATGCGGTACAGTGCAATGCGGTAATCCGCTATACC
63712404 GATATGATGT
Statistics
Matches: 127, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
92 127 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (92 bp):
GTACGTAGTGTAGCTAACATACATGCGGTACAGTGCAATGCGGTAATCCGCTATACCAATAGGTT
GCAGTAAAACTGCCAGTTCAGTCAAAG
Found at i:63712591 original size:4 final size:4
Alignment explanation
Indices: 63712582--63712625 Score: 88
Period size: 4 Copynumber: 11.0 Consensus size: 4
63712572 AGTTTATGCA
63712582 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
63712626 CAGTCAGAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:63712952 original size:20 final size:21
Alignment explanation
Indices: 63712915--63712961 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
63712905 AGGCATACGC
63712915 CTGTGTGAAGTAGGGGTATGG
1 CTGTGTGAAGTAGGGGTATGG
*
63712936 CTGTGTGAAG-CGGGGTATGG
1 CTGTGTGAAGTAGGGGTATGG
*
63712956 CCGTGT
1 CTGTGT
63712962 AAACAGGCCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.15, C:0.11, G:0.47, T:0.28
Consensus pattern (21 bp):
CTGTGTGAAGTAGGGGTATGG
Found at i:63713142 original size:13 final size:13
Alignment explanation
Indices: 63713122--63713154 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
63713112 AGCCACACAA
63713122 CCGTGTGGCCAGG
1 CCGTGTGGCCAGG
*
63713135 CTGTGTGGCCAGG
1 CCGTGTGGCCAGG
63713148 CCGTGTG
1 CCGTGTG
63713155 ACTCCCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.27, G:0.45, T:0.21
Consensus pattern (13 bp):
CCGTGTGGCCAGG
Found at i:63713791 original size:5 final size:5
Alignment explanation
Indices: 63713783--63713807 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
63713773 AACAAATCAA
63713783 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
63713808 GTGCACCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:63716089 original size:22 final size:22
Alignment explanation
Indices: 63716064--63716167 Score: 75
Period size: 22 Copynumber: 4.7 Consensus size: 22
63716054 GGCACTATTA
63716064 TGCAAAGCAATAGGCACCAAAG
1 TGCAAAGCAATAGGCACCAAAG
* ** ****
63716086 TGCAAATCAGCAGGCATTGTAG
1 TGCAAAGCAATAGGCACCAAAG
*
63716108 TGCAAAGCAATAGGCACCGAAG
1 TGCAAAGCAATAGGCACCAAAG
* * *
63716130 TGTAGAA-CAGTAGGCACCATAG
1 TGCA-AAGCAATAGGCACCAAAG
**
63716152 TGCAAAATAATAGGCA
1 TGCAAAGCAATAGGCA
63716168 TCGGAGTGCA
Statistics
Matches: 60, Mismatches: 20, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
21 2 0.03
22 56 0.93
23 2 0.03
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.15
Consensus pattern (22 bp):
TGCAAAGCAATAGGCACCAAAG
Found at i:63716101 original size:86 final size:87
Alignment explanation
Indices: 63715942--63716101 Score: 191
Period size: 86 Copynumber: 1.9 Consensus size: 87
63715932 ACACCACACC
* * * *
63715942 AGTAGGCACCGAAGTGCAAATAAATGGGCACCATAGTCCAAAGCGATAGTCACTGAAATGAAAAT
1 AGTAGGCACCGAAGTGCAAATAAATAGGCACCATAGTCCAAAGCAATAGGCACTCAAATGAAAAT
*
63716007 CAGTAGGCACCTAAGGTAGAAT
66 CAGCAGGCACCTAAGGTAGAAT
* * * * *
63716029 AGTAGGCATCGAAGTGCAAA-AAGTAGGCACTATTA-TGCAAAGCAATAGGCAC-CAAAGTGCAA
1 AGTAGGCACCGAAGTGCAAATAAATAGGCACCA-TAGTCCAAAGCAATAGGCACTCAAA-TGAAA
63716091 ATCAGCAGGCA
64 ATCAGCAGGCA
63716102 TTGTAGTGCA
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
85 3 0.05
86 37 0.61
87 21 0.34
ACGTcount: A:0.41, C:0.19, G:0.24, T:0.16
Consensus pattern (87 bp):
AGTAGGCACCGAAGTGCAAATAAATAGGCACCATAGTCCAAAGCAATAGGCACTCAAATGAAAAT
CAGCAGGCACCTAAGGTAGAAT
Found at i:63716167 original size:66 final size:66
Alignment explanation
Indices: 63716032--63716212 Score: 165
Period size: 66 Copynumber: 2.8 Consensus size: 66
63716022 GTAGAATAGT
* ** * * *
63716032 AGGCATCGAAGTGCAAA--AAGTAGGCACTATTATGCAAAGCAATAGGCACCAAAGTGCAAATCA
1 AGGCATCGGAGTGCAAAGCAA-TAGGCACCGTAATGTAAAGCAGTAGGCACCAAAGTGCAAATCA
*
63716095 GC
65 AC
* * *
63716097 AGGCATTGTAGTGCAAAGCAATAGGCACCG-AAGTGTAGAA-CAGTAGGCACCATAGTGCAAAAT
1 AGGCATCGGAGTGCAAAGCAATAGGCACCGTAA-TGTA-AAGCAGTAGGCACCAAAGTGC-AAAT
*
63716160 -AAT
63 CAAC
** *
63716163 AGGCATCGGAGTGCAAATTAGTAGGCACCGTAATGTAAAGCAGTAGGCAC
1 AGGCATCGGAGTGCAAAGCAATAGGCACCGTAATGTAAAGCAGTAGGCAC
63716213 TGAACTACAG
Statistics
Matches: 94, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
65 18 0.19
66 66 0.70
67 10 0.11
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.17
Consensus pattern (66 bp):
AGGCATCGGAGTGCAAAGCAATAGGCACCGTAATGTAAAGCAGTAGGCACCAAAGTGCAAATCAA
C
Found at i:63716210 original size:44 final size:44
Alignment explanation
Indices: 63715944--63716212 Score: 186
Period size: 44 Copynumber: 6.2 Consensus size: 44
63715934 ACCACACCAG
* * * * * *
63715944 TAGGCACCGAAGTGCAAATAAATGGGCACCATAGTCCAAAGCGA
1 TAGGCACCGAAGTGCAAATCAGTAGGCACCATAATGCAAAGCAA
* * * * * * * *
63715988 TAGTCACTGAAATGAAAATCAGTAGGCACC-TAAGGTAGAA-TAG
1 TAGGCACCGAAGTGCAAATCAGTAGGCACCATAATGCA-AAGCAA
* * * *
63716031 TAGGCATCGAAGTGCAAA-AAGTAGGCACTATTATGCAAAGCAA
1 TAGGCACCGAAGTGCAAATCAGTAGGCACCATAATGCAAAGCAA
* * *** *
63716074 TAGGCACCAAAGTGCAAATCAGCAGGCATTGTAGTGCAAAGCAA
1 TAGGCACCGAAGTGCAAATCAGTAGGCACCATAATGCAAAGCAA
* * **
63716118 TAGGCACCGAAGTGTAGAA-CAGTAGGCACCATAGTGCAAAATAA
1 TAGGCACCGAAGTGCA-AATCAGTAGGCACCATAATGCAAAGCAA
* * * * * *
63716162 TAGGCATCGGAGTGCAAATTAGTAGGCACCGTAATGTAAAGCAG
1 TAGGCACCGAAGTGCAAATCAGTAGGCACCATAATGCAAAGCAA
63716206 TAGGCAC
1 TAGGCAC
63716213 TGAACTACAG
Statistics
Matches: 166, Mismatches: 53, Indels: 12
0.72 0.23 0.05
Matches are distributed among these distances:
42 11 0.07
43 39 0.23
44 114 0.69
45 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.17
Consensus pattern (44 bp):
TAGGCACCGAAGTGCAAATCAGTAGGCACCATAATGCAAAGCAA
Found at i:63717551 original size:30 final size:29
Alignment explanation
Indices: 63717525--63717599 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 29
63717515 ATTACATAAA
*
63717525 ATAAATAGTAATATACATAGCATACATGAT
1 ATAAATA-TAATATACATAACATACATGAT
63717555 ATAAACTATAATATACATAACATACATGAT
1 ATAAA-TATAATATACATAACATACATGAT
*
63717585 ATAAACAATAATATA
1 ATAAA-TATAATATA
63717600 TGCAGACACT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
30 40 0.95
31 2 0.05
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (29 bp):
ATAAATATAATATACATAACATACATGAT
Found at i:63717801 original size:17 final size:19
Alignment explanation
Indices: 63717779--63717853 Score: 79
Period size: 19 Copynumber: 4.2 Consensus size: 19
63717769 ATGGAAATAT
63717779 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
63717796 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
* *
63717815 AATCATAGATATGATA--C
1 AATCTTACATATGATATGC
*
63717832 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
63717850 AATC
1 AATC
63717854 CTAAAAGATA
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
17 21 0.41
18 6 0.12
19 24 0.47
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:63717811 original size:19 final size:19
Alignment explanation
Indices: 63717787--63717853 Score: 104
Period size: 19 Copynumber: 3.7 Consensus size: 19
63717777 ATAATCTTCA
63717787 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
63717806 ATGATATGCAATCATAGAT
1 ATGATATGCAATCTTAGAT
63717825 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
63717842 ATGAT-TGCAATC
1 ATGATATGCAATC
63717854 CTAAAAGATA
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
17 15 0.34
18 5 0.11
19 24 0.55
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:63718173 original size:18 final size:17
Alignment explanation
Indices: 63718150--63718183 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
63718140 TTTCCCTAAT
*
63718150 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
63718168 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
63718184 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:63719050 original size:17 final size:17
Alignment explanation
Indices: 63719028--63719069 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
63719018 AGAAGCTATG
63719028 CTTTCGTAAGGTTTTCA
1 CTTTCGTAAGGTTTTCA
63719045 CTTTCGTAAGGTTTTCA
1 CTTTCGTAAGGTTTTCA
*
63719062 CCTTCGTA
1 CTTTCGTA
63719070 TGAGCTAGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.45
Consensus pattern (17 bp):
CTTTCGTAAGGTTTTCA
Found at i:63730237 original size:89 final size:87
Alignment explanation
Indices: 63730108--63730269 Score: 200
Period size: 89 Copynumber: 1.8 Consensus size: 87
63730098 ATTCGACGGA
* *
63730108 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTTCACATCAAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTACAC-T-AAAGCAGATCCAAGATG
*
63730173 ATTTGGCATCCTTGCATTCACAAG
64 ATTTGACATCCTTGCATTCACAAG
* ** * * * *
63730197 GAGCAGATCGAAGACATAGCAGATTTGGCTTTC-ACGTGTTTACGCTAAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGA-ATGTTTACACTAAAGCAGATCCAAGATGA
63730261 TTTGACATC
65 TTTGACATC
63730270 TCTGTACTGT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 24 0.39
88 2 0.03
89 36 0.58
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTACACTAAAGCAGATCCAAGATGAT
TTGACATCCTTGCATTCACAAG
Found at i:63730445 original size:62 final size:62
Alignment explanation
Indices: 63730345--63730476 Score: 246
Period size: 62 Copynumber: 2.1 Consensus size: 62
63730335 TCGAAGACAT
*
63730345 AGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATCAGACGGGG
*
63730407 AGTAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATCAGACGGGG
1 AGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATCAGACGGGG
63730469 AGCAGATC
1 AGCAGATC
63730477 AAAGACATAA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.27
Consensus pattern (62 bp):
AGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATCAGACGGGG
Found at i:63730513 original size:78 final size:78
Alignment explanation
Indices: 63730410--63730580 Score: 281
Period size: 78 Copynumber: 2.2 Consensus size: 78
63730400 GACGGGGAGT
*
63730410 AGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATCAGACGGGGAGCAGA
1 AGATCTGACCTTCATTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATCAGACGGGGAGCAGA
63730475 TCAAAGACATAAC
66 TCAAAGACATAAC
* *
63730488 AGAT-TGGACCTTCATTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATTAGATGGGGAGCAG
1 AGATCT-GACCTTCATTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATCAGACGGGGAGCAG
* *
63730552 ATCGAAGACATAGC
65 ATCAAAGACATAAC
63730566 AGATCTGACCTTCAT
1 AGATCTGACCTTCAT
63730581 GTGTTTACAT
Statistics
Matches: 86, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
77 1 0.01
78 84 0.98
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (78 bp):
AGATCTGACCTTCATTGAAGCAGATCCAAGATAATTTGGCATCTCTGTATCAGACGGGGAGCAGA
TCAAAGACATAAC
Found at i:63730729 original size:89 final size:89
Alignment explanation
Indices: 63730610--63730779 Score: 295
Period size: 89 Copynumber: 1.9 Consensus size: 89
63730600 TCCAAGATGA
*
63730610 CAGATTTGGCATCTCTGTATTAGACCGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACCGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
63730675 TAGACGGGGAGCAGATTGGAGAAC
66 TAGACGGGGAGCAGATTGGAGAAC
* * * *
63730699 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACCGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
63730764 TAGACGGGGAGCAGAT
66 TAGACGGGGAGCAGAT
63730780 CAAAGATAGC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 76 1.00
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (89 bp):
CAGATTTGGCATCTCTGTATTAGACCGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
TAGACGGGGAGCAGATTGGAGAAC
Found at i:63730786 original size:45 final size:45
Alignment explanation
Indices: 63730521--63730793 Score: 293
Period size: 45 Copynumber: 6.0 Consensus size: 45
63730511 ATCCAAGATA
* *
63730521 ATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACAG
* * * * * * * *
63730568 ATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACAG
1 ATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACAG
* * *
63730613 ATTTGGCATCTCTGTATTAGACCGGGAGCAAATCGGAGATAACAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
* * *
63730658 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGGAGA-ACCAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
*
63730702 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
* * *
63730747 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
63730792 AT
1 AT
63730794 ATCGCCTTCC
Statistics
Matches: 189, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
43 1 0.01
44 44 0.23
45 115 0.61
46 4 0.02
47 21 0.11
48 4 0.02
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (45 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAG
Found at i:63731165 original size:19 final size:19
Alignment explanation
Indices: 63731141--63731231 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
63731131 ATAATCTTCA
*
63731141 ATGATATGCAATCTTCGAT
1 ATGATATGCAATCTTAGAT
63731160 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
63731179 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
63731196 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
63731214 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
63731232 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 35 0.52
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:63731179 original size:14 final size:15
Alignment explanation
Indices: 63731162--63731217 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
63731152 TCTTCGATAT
63731162 GATATG-CAATCTTA
1 GATATGACAATCTTA
63731176 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
63731193 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
63731211 GATATGA
1 GATATGA
63731218 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:63731212 original size:35 final size:37
Alignment explanation
Indices: 63731149--63731238 Score: 134
Period size: 35 Copynumber: 2.5 Consensus size: 37
63731139 CAATGATATG
*
63731149 CAATCTTCGATATGATATGCAATCTTAGATATG-ATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGAATA
63731185 CAATCTTAGATATGAT-TGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGA-ATA
63731222 CAATCTTAGA-A-GATATG
1 CAATCTTAGATATGATATG
63731239 ATTTTGTAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
35 19 0.38
36 18 0.36
37 13 0.26
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGAATA
Found at i:63732226 original size:13 final size:13
Alignment explanation
Indices: 63732204--63732323 Score: 86
Period size: 13 Copynumber: 9.1 Consensus size: 13
63732194 TGGTTTCGAC
63732204 AATATACATACAT
1 AATATACATACAT
* *
63732217 GATATCCATACAT
1 AATATACATACAT
*
63732230 AATATA-A-ACAAC
1 AATATACATAC-AT
63732242 AATATACATAACAT
1 AATATACAT-ACAT
*
63732256 ACATAAACAGTA-AT
1 A-ATATACA-TACAT
* *
63732270 GTACATAGCATACAT
1 -AATATA-CATACAT
*
63732285 AATATCCATAC-T
1 AATATACATACAT
*
63732297 ACTATACATACAT
1 AATATACATACAT
63732310 AATATACATACAT
1 AATATACATACAT
63732323 A
1 A
63732324 GCAGACATAC
Statistics
Matches: 81, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
11 2 0.02
12 18 0.22
13 35 0.43
14 12 0.15
15 13 0.16
16 1 0.01
ACGTcount: A:0.51, C:0.18, G:0.03, T:0.28
Consensus pattern (13 bp):
AATATACATACAT
Found at i:63732251 original size:25 final size:25
Alignment explanation
Indices: 63732218--63732315 Score: 63
Period size: 25 Copynumber: 3.7 Consensus size: 25
63732208 TACATACATG
*
63732218 ATATCCATACATAATATAAACAACA
1 ATATACATACATAATATAAACAACA
* **
63732243 ATATACATAACAT-ACATAAACAGTA
1 ATATACAT-ACATAATATAAACAACA
* **
63732268 ATGTACATAGCATACATAATATCCATACTA
1 ATATACATA-CATA-AT-ATAAACA-AC-A
*
63732298 CTATACATACATAATATA
1 ATATACATACATAATATA
63732316 CATACATAGC
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
24 1 0.02
25 26 0.48
26 4 0.07
27 4 0.07
28 7 0.13
29 4 0.07
30 8 0.15
ACGTcount: A:0.51, C:0.18, G:0.03, T:0.28
Consensus pattern (25 bp):
ATATACATACATAATATAAACAACA
Found at i:63739918 original size:40 final size:40
Alignment explanation
Indices: 63739874--63740053 Score: 179
Period size: 39 Copynumber: 4.5 Consensus size: 40
63739864 AAGTGAATAT
* * *
63739874 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCCATCGTGCGAGATACTAA
* *
63739914 ATCCGGGTTAAGTCCCGAAGG-CATCGTGCGAGTTATTAA
1 ATCCGGGTTAAGTCCCGAAGGCCATCGTGCGAGATACTAA
* **
63739953 ATCCGGGTTAAGTCCCGAAGG-CAGTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCCA-TCGTGCGAGATACTAA
* * * *
63739993 ATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCCATCGTGCGAGATACTAA
* * *
63740032 AACCGGGCTATGTCCCGAAGGC
1 ATCCGGGTTAAGTCCCGAAGGC
63740054 ATTTGAACGA
Statistics
Matches: 124, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 69 0.56
40 55 0.44
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCCATCGTGCGAGATACTAA
Found at i:63739954 original size:39 final size:39
Alignment explanation
Indices: 63739835--63740056 Score: 230
Period size: 40 Copynumber: 5.6 Consensus size: 39
63739825 TTGAATGCTG
* * * * * *
63739835 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
63739875 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* *
63739915 TCCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* **
63739954 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
* *
63739994 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
63740033 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63740057 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 73 0.46
40 76 0.48
41 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:63739983 original size:79 final size:79
Alignment explanation
Indices: 63739835--63740054 Score: 235
Period size: 79 Copynumber: 2.8 Consensus size: 79
63739825 TTGAATGCTG
* * * * * * **
63739835 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGTTAAG-TCCCGAAGGCAGT
*
63739899 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* *
63739915 TCCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGTCG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGTTAAGTCCCGAAGGCAGTCG
* **
63739980 TGCGAGTTGTTAAA
66 TGCGAGATACTAAA
* * * * * *
63739994 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGTTAAGTCCCGAAGGCA
63740055 TTTGAACGAG
Statistics
Matches: 118, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
78 1 0.01
79 92 0.78
80 25 0.21
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGTTAAGTCCCGAAGGCAGTCG
TGCGAGATACTAAA
Found at i:63740076 original size:79 final size:79
Alignment explanation
Indices: 63739910--63740091 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 79
63739900 GTGCGAGATA
* * *
63739910 CTAAATCCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGC
1 CTAAATCCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
** **
63739975 AGTCGTGCGAGTTG
66 AGTCGAACGAGGAG
* * * * *
63739989 TTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 CTAAATCCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
* *
63740054 ATTTGAACGAGGAG
66 AGTCGAACGAGGAG
* *
63740068 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
63740092 TACGTGATTT
Statistics
Matches: 85, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
78 14 0.16
79 71 0.84
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (79 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGC
AGTCGAACGAGGAG
Found at i:63747943 original size:39 final size:39
Alignment explanation
Indices: 63747739--63747961 Score: 232
Period size: 40 Copynumber: 5.6 Consensus size: 39
63747729 TTGAATGCTG
* * * * * *
63747739 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * *
63747779 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
*
63747819 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* **
63747859 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAA
* *
63747899 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
63747938 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63747962 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 39 0.25
40 109 0.69
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:63747981 original size:79 final size:80
Alignment explanation
Indices: 63747814--63747996 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
63747804 GTGCGAGATA
* * *
63747814 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
63747879 CAGTCGTGCGAGTTG
66 CAGTCGAACGAGGAG
* * * *
63747894 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
63747958 CATTTGAACGAGGAG
66 CAGTCGAACGAGGAG
* *
63747973 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
63747997 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 14 0.16
79 45 0.52
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CAGTCGAACGAGGAG
Found at i:63750458 original size:14 final size:14
Alignment explanation
Indices: 63750423--63750461 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
63750413 TATTAAAACT
*
63750423 CCCTAACCCACTAA
1 CCCTAACCCAATAA
*
63750437 CCCAAACCCAATAA
1 CCCTAACCCAATAA
*
63750451 CCTTAACCCAA
1 CCCTAACCCAA
63750462 CTTGAAAATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.41, C:0.46, G:0.00, T:0.13
Consensus pattern (14 bp):
CCCTAACCCAATAA
Found at i:63755695 original size:39 final size:40
Alignment explanation
Indices: 63755652--63755821 Score: 216
Period size: 40 Copynumber: 4.3 Consensus size: 40
63755642 TCCTCGTTCA
* * * *
63755652 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
63755691 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
** *
63755731 GCTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
63755771 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
63755811 AAGGCCTTCGG
1 AATGCCTTCGG
63755822 ATCTTAATCC
Statistics
Matches: 115, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 34 0.30
40 81 0.70
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:63755750 original size:40 final size:40
Alignment explanation
Indices: 63755652--63755874 Score: 202
Period size: 40 Copynumber: 5.6 Consensus size: 40
63755642 TCCTCGTTCA
* * * ** *
63755652 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
63755691 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** *
63755731 GCTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
63755771 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
63755811 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
63755851 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
63755875 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.24
40 110 0.71
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:63755818 original size:80 final size:79
Alignment explanation
Indices: 63755650--63755874 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 79
63755640 GCTCCTCGTT
* * * * * *
63755650 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
63755715 TTTAACAACTCGCA
66 TTTAACAACTCGCA
***
63755729 CGGCTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
** *
63755794 ATTTAGTATCTCGCA
65 ATTTAACAACTCGCA
* * * * * * * *
63755809 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACAATGCCTTCGGGACTTAACCCG
63755873 GA
64 GA
63755875 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
79 36 0.30
80 79 0.66
81 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAATGCCTTCGGGACTTAACCCGGA
TTTAACAACTCGCA
Found at i:63757585 original size:20 final size:20
Alignment explanation
Indices: 63757533--63757575 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
63757523 TGAAATGTCT
63757533 AATGTTGAAAAAGCTTGTGA
1 AATGTTGAAAAAGCTTGTGA
63757553 AATGTTGAAAAAGCTTGTGA
1 AATGTTGAAAAAGCTTGTGA
63757573 AAT
1 AAT
63757576 TATGCAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.05, G:0.23, T:0.30
Consensus pattern (20 bp):
AATGTTGAAAAAGCTTGTGA
Found at i:63758487 original size:19 final size:19
Alignment explanation
Indices: 63758463--63758509 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
63758453 AGATTAAAAT
63758463 TTCAGTTAATTTTGGATAA
1 TTCAGTTAATTTTGGATAA
* *
63758482 TTCAGTTGATTTTGGTTAA
1 TTCAGTTAATTTTGGATAA
*
63758501 TTCGGTTAA
1 TTCAGTTAA
63758510 ATGAAAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.26, C:0.06, G:0.19, T:0.49
Consensus pattern (19 bp):
TTCAGTTAATTTTGGATAA
Found at i:63759621 original size:34 final size:34
Alignment explanation
Indices: 63759574--63759642 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
63759564 GAGTAATTAG
*
63759574 TTTTCATTTTTTAAGTTTGGTTATTCCTTACGCA
1 TTTTCATTGTTTAAGTTTGGTTATTCCTTACGCA
63759608 TTTTCATTGTTTAAGTTTGGTTATTCCTTACGCA
1 TTTTCATTGTTTAAGTTTGGTTATTCCTTACGCA
63759642 T
1 T
63759643 GAGTATTGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.17, C:0.14, G:0.13, T:0.55
Consensus pattern (34 bp):
TTTTCATTGTTTAAGTTTGGTTATTCCTTACGCA
Found at i:63759651 original size:34 final size:34
Alignment explanation
Indices: 63759577--63759653 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
63759567 TAATTAGTTT
* **
63759577 TCATTTTTTAAGTTTGGTTATTCCTTACGCATTT
1 TCATTGTTTAAGTTTGGTTATTCCTTACGCATAG
63759611 TCATTGTTTAAGTTTGGTTATTCCTTACGCATGAG
1 TCATTGTTTAAGTTTGGTTATTCCTTACGCAT-AG
63759646 T-ATTGTTT
1 TCATTGTTT
63759654 TACCAGTGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
34 38 0.97
35 1 0.03
ACGTcount: A:0.18, C:0.13, G:0.16, T:0.53
Consensus pattern (34 bp):
TCATTGTTTAAGTTTGGTTATTCCTTACGCATAG
Found at i:63771064 original size:46 final size:46
Alignment explanation
Indices: 63771014--63771186 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
63771004 TTGAGCATCT
63771014 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
63771060 GAACTCGTTGAGTTGAGTCCGAGTT--CGT-GGGATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
*
63771107 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* *
63771153 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63771187 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
44 2 0.02
45 1 0.01
46 59 0.54
47 28 0.26
48 1 0.01
49 2 0.02
50 6 0.06
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:63771167 original size:93 final size:93
Alignment explanation
Indices: 63771008--63771179 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
63770998 GGATGGTTGA
* *
63771008 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
63771073 TGAGTCCGAGTTCGTGGGATGTAACTAG
66 TGAGTCCGAGTTCGTGGGATGTAACTAG
*
63771101 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
63771166 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63771180 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGGGATGTAACTAG
Found at i:63777910 original size:46 final size:46
Alignment explanation
Indices: 63777860--63778035 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
63777850 TGGTTGAGCA
63777860 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63777906 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
63777951 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
63777999 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63778036 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 63 0.56
47 29 0.26
48 3 0.03
50 5 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:63778016 original size:93 final size:93
Alignment explanation
Indices: 63777857--63778028 Score: 326
Period size: 93 Copynumber: 1.8 Consensus size: 93
63777847 GGATGGTTGA
*
63777857 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
63777922 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
63777950 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
63778015 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
63778029 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:63786742 original size:27 final size:27
Alignment explanation
Indices: 63786712--63786889 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
63786702 ATATTGAGTC
* *
63786712 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
63786739 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
63786766 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
63786794 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
63786821 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
63786848 GGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
63786875 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63786890 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:63788996 original size:27 final size:27
Alignment explanation
Indices: 63788962--63789139 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
63788952 TAAATTGTAC
63788962 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
63788989 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63789015 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
63789043 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
63789071 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
63789098 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
63789125 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
63789140 GACTTAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:63789076 original size:82 final size:81
Alignment explanation
Indices: 63788963--63789118 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
63788953 AAATTGTACA
* *
63788963 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
63789027 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
63789044 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
63789109 TGCGAGTTGA
65 TGCGAATTGA
63789119 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:63789130 original size:82 final size:81
Alignment explanation
Indices: 63788959--63789139 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
63788949 GGTTAAATTG
* *
63788959 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
63789024 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
63789040 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
63789104 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
63789122 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
63789140 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:63791499 original size:3 final size:3
Alignment explanation
Indices: 63791491--63791524 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
63791481 ATATTTCAAC
63791491 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
63791525 CCAATGTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Done.