Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 197 of 325
Found at i:63791619 original size:31 final size:32
Alignment explanation
Indices: 63791579--63791652 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 32
63791569 ACGTATAGGC
*
63791579 TTATTTTTATTACTT-TATTTCAATATCT-TTA
1 TTATATTTATTACTTGTATTTCAATAT-TGTTA
* * *
63791610 TTGTATTTATT-TTTGTGTTTCAATATTGTTA
1 TTATATTTATTACTTGTATTTCAATATTGTTA
63791641 TTATATTTATTA
1 TTATATTTATTA
63791653 TTATTATAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
30 3 0.09
31 32 0.91
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.65
Consensus pattern (32 bp):
TTATATTTATTACTTGTATTTCAATATTGTTA
Found at i:63792014 original size:25 final size:22
Alignment explanation
Indices: 63791983--63792040 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
63791973 ATTATATGTG
63791983 TATATATTATGTAAAATGTTTTAA
1 TATATATTATGT-AAATGTTTT-A
* *
63792007 TATTATATTATATATATGTTTTA
1 TA-TATATTATGTAAATGTTTTA
63792030 TATATATTATG
1 TATATATTATG
63792041 AACATGTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 8 0.27
23 3 0.10
24 10 0.33
25 9 0.30
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (22 bp):
TATATATTATGTAAATGTTTTA
Found at i:63792047 original size:22 final size:23
Alignment explanation
Indices: 63791983--63792047 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
63791973 ATTATATGTG
63791983 TATATATTATGTAAAATGTTTTAA
1 TATATATTATG-AAAATGTTTTAA
*
63792007 TATTATATTAT-ATATATGTTTT-A
1 TA-TATATTATGA-AAATGTTTTAA
*
63792030 TATATATTATGAACATGT
1 TATATATTATGAAAATGT
63792048 ATTTTCAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
22 13 0.36
23 5 0.14
24 10 0.28
25 8 0.22
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (23 bp):
TATATATTATGAAAATGTTTTAA
Found at i:63804375 original size:74 final size:72
Alignment explanation
Indices: 63804256--63804498 Score: 290
Period size: 76 Copynumber: 3.3 Consensus size: 72
63804246 CGATTTCTGT
* * * * *
63804256 TTTTCAATTTATGTTT-TCAAAAATCAATTCATATTGCTATAGGTGAATTGAGCCTCGGGGCACG
1 TTTTCAATTT-TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
63804320 CTGAGGTA
65 CTGAGGTA
63804328 TTTTCAATTATTGTTTGTCAAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
1 TTTTCAATT-TTGTTTGTCAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
63804393 GCTGAGGTA
64 GCTGAGGTA
* * * * *
63804402 TTGTCAATTTTTTATATGTTTCAAATATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTTGT-T-TG--TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
* *
63804467 ACGCTAAGGTG
62 ACGCTGAGGTA
*
63804478 TTTTCAATTTCTGTTTTTCAA
1 TTTTCAATTT-TGTTTGTCAA
63804499 TTTCTGTCCT
Statistics
Matches: 148, Mismatches: 15, Indels: 15
0.83 0.08 0.08
Matches are distributed among these distances:
72 14 0.09
73 15 0.10
74 53 0.36
75 3 0.02
76 55 0.37
77 8 0.05
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (72 bp):
TTTTCAATTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
TGAGGTA
Found at i:63804497 original size:14 final size:14
Alignment explanation
Indices: 63804478--63804505 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
63804468 CGCTAAGGTG
63804478 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
63804492 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
63804506 CCTTCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:63804584 original size:91 final size:89
Alignment explanation
Indices: 63804428--63804640 Score: 313
Period size: 91 Copynumber: 2.4 Consensus size: 89
63804418 TGTTTCAAAT
* * **
63804428 ATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTGTTTTCAATTTCTG-T
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTATTTTCAATTGATGTT
63804492 TTTTCAATTT-CTGTCCTTCAAAAAAAA
66 TTTTCAATTTAC-G-CCTTC--AAAAAA
*
63804519 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTGATGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTATTTTCAATTGATGTT
*
63804584 TTTTCAATTTACGCTTTCAAAAAA
66 TTTTCAATTTACGCCTTCAAAAAA
*
63804608 ATCAACTCATATTACGAGAGGTGAGTTGAGCCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
63804641 TGGCTCGCGT
Statistics
Matches: 113, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
89 38 0.34
91 62 0.55
92 12 0.11
93 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (89 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTATTTTCAATTGATGTT
TTTTCAATTTACGCCTTCAAAAAA
Found at i:63804778 original size:73 final size:73
Alignment explanation
Indices: 63804693--63804838 Score: 204
Period size: 73 Copynumber: 2.0 Consensus size: 73
63804683 TGTTTTTTTT
* * * * *
63804693 AAATCAACTCATATTGCGGGAGGCGAGTTGAGCCTC-GGAGCAAGTTGAGGTATTTTCAATTGCT
1 AAATCAACTCATACTACGAGAGGAGAGTTGAGCCTCAGGA-CAAGCTGAGGTATTTTCAATTGCT
63804757 GTTTGTCAA
65 GTTTGTCAA
* *
63804766 AAATCAACTCATACTACGAGAGGAGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATACTACGAGAGGAGAGTTGAGCCTCAGGACAAGCTGAGGTATTTTCAATTGCTG
*
63804831 TTTTTCAA
66 TTTGTCAA
63804839 TTTATGTTTT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
73 61 0.95
74 3 0.05
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (73 bp):
AAATCAACTCATACTACGAGAGGAGAGTTGAGCCTCAGGACAAGCTGAGGTATTTTCAATTGCTG
TTTGTCAA
Found at i:63804851 original size:13 final size:14
Alignment explanation
Indices: 63804818--63804848 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
63804808 TGCTGAGGTA
*
63804818 TTTTCAATTTCTGT
1 TTTTCAATTTATGT
63804832 TTTTCAATTTATGT
1 TTTTCAATTTATGT
63804846 TTT
1 TTT
63804849 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.10, G:0.06, T:0.68
Consensus pattern (14 bp):
TTTTCAATTTATGT
Found at i:63804941 original size:18 final size:18
Alignment explanation
Indices: 63804907--63804941 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
63804897 GCTGAGGTAT
* *
63804907 TTTCAATTTTTGTTTTTA
1 TTTCAATTTATGCTTTTA
63804925 TTTCAATTTATGCTTTT
1 TTTCAATTTATGCTTTT
63804942 CAAATTCTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.09, G:0.06, T:0.69
Consensus pattern (18 bp):
TTTCAATTTATGCTTTTA
Found at i:63806718 original size:3 final size:3
Alignment explanation
Indices: 63806712--63806754 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
63806702 ATTATTGATG
63806712 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
63806755 GTACTTTTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:63807358 original size:25 final size:22
Alignment explanation
Indices: 63807327--63807428 Score: 75
Period size: 22 Copynumber: 4.4 Consensus size: 22
63807317 ATTATATGTG
63807327 TATATATTATGTAAAATGTTTTAA
1 TATATATTATGT-AAATGTTTT-A
* *
63807351 TATTATATTATATATATGTTTTA
1 TA-TATATTATGTAAATGTTTTA
*
63807374 TATATATTATG-AACATGTATTTT
1 TATATATTATGTAA-ATGT-TTTA
*
63807397 TA-ATATTATTAGTTAAAT-TTTTG
1 TATATATTA-T-G-TAAATGTTTTA
63807420 TATATATTA
1 TATATATTA
63807429 CCCTATGTAC
Statistics
Matches: 64, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
21 1 0.02
22 18 0.28
23 14 0.22
24 18 0.28
25 11 0.17
26 2 0.03
ACGTcount: A:0.37, C:0.01, G:0.07, T:0.55
Consensus pattern (22 bp):
TATATATTATGTAAATGTTTTA
Found at i:63809152 original size:30 final size:30
Alignment explanation
Indices: 63809116--63809177 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
63809106 TAAGGTGTTG
63809116 TTTTTTCAGCTAATCTAATAGAGTTATCGT
1 TTTTTTCAGCTAATCTAATAGAGTTATCGT
*
63809146 TTTTTTCAGCTAATTTAATAGAGTTATCGT
1 TTTTTTCAGCTAATCTAATAGAGTTATCGT
63809176 TT
1 TT
63809178 AGGGAGTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.11, G:0.13, T:0.50
Consensus pattern (30 bp):
TTTTTTCAGCTAATCTAATAGAGTTATCGT
Found at i:63819662 original size:19 final size:18
Alignment explanation
Indices: 63819635--63819674 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
63819625 AAAAAAGATA
63819635 AAATTATAA-TAATATATT
1 AAATTATAATTAATA-ATT
63819653 AAATTAATAATTAATAATT
1 AAATT-ATAATTAATAATT
63819672 AAA
1 AAA
63819675 AAATTCATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 5 0.25
19 10 0.50
20 5 0.25
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAATTATAATTAATAATT
Found at i:63819994 original size:8 final size:9
Alignment explanation
Indices: 63819963--63819993 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
63819953 GTGGTTGACG
63819963 AAAAATTTT
1 AAAAATTTT
63819972 AAAAATTTT
1 AAAAATTTT
63819981 AAAAATTTT
1 AAAAATTTT
63819990 AAAA
1 AAAA
63819994 TGTTAATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
AAAAATTTT
Found at i:63820673 original size:28 final size:27
Alignment explanation
Indices: 63820603--63820673 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 27
63820593 ATGACACCTT
* * *
63820603 AAAATAATATTAAAAATTAAAAATTAT
1 AAAATAATATTAAAAATAAAAAACTAC
*
63820630 ATACATAAT-TTGAAAAATAAAAAACTAC
1 A-AAATAATATT-AAAAATAAAAAACTAC
63820658 AAAATATATATTAAAA
1 AAAATA-ATATTAAAA
63820674 GTCAGAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
27 7 0.20
28 26 0.74
29 2 0.06
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (27 bp):
AAAATAATATTAAAAATAAAAAACTAC
Found at i:63821842 original size:17 final size:19
Alignment explanation
Indices: 63821801--63821860 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 19
63821791 TTAAGGTTTT
*
63821801 TTTTTTACATTTTTTATATA
1 TTTTTTA-ATTTTTCATATA
63821821 TTTTTTAATTTTTCATA-A
1 TTTTTTAATTTTTCATATA
63821839 -TTTTTAATTTTT-ATATA
1 TTTTTTAATTTTTCATATA
63821856 CTTTT
1 -TTTT
63821861 GAGTTCTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
16 3 0.08
17 13 0.36
18 1 0.03
19 12 0.33
20 7 0.19
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTTTAATTTTTCATATA
Found at i:63826943 original size:45 final size:45
Alignment explanation
Indices: 63826879--63826968 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
63826869 TTTTTAAAGA
*
63826879 ATAATTTATTTTATTTTTTTAATAAAATAAAACCAACTGAATTTT
1 ATAATTTATTTTAATTTTTTAATAAAATAAAACCAACTGAATTTT
*
63826924 ATAATTTATTTTAATTTTTTAATAAAATAAAATCAACTGAATTTT
1 ATAATTTATTTTAATTTTTTAATAAAATAAAACCAACTGAATTTT
63826969 TTTACATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.49
Consensus pattern (45 bp):
ATAATTTATTTTAATTTTTTAATAAAATAAAACCAACTGAATTTT
Found at i:63827600 original size:28 final size:28
Alignment explanation
Indices: 63827501--63827600 Score: 71
Period size: 28 Copynumber: 3.4 Consensus size: 28
63827491 TTAAAATTTG
*
63827501 AATTTTTTTAATTTGGTTATTGAA-TTTAA
1 AATTTTTTTAATTTGTTTA-T-AATTTTAA
*
63827530 ATTTTGTTAATTATTATTT-TTT-TAATTTTAA
1 AATTT-TT--TTA--ATTTGTTTATAATTTTAA
* * *
63827561 AAATGTTATAATTTGTTTATAATTTTAA
1 AATTTTTTTAATTTGTTTATAATTTTAA
63827589 AATTTTTTTAAT
1 AATTTTTTTAAT
63827601 ATTTTCTTAA
Statistics
Matches: 54, Mismatches: 9, Indels: 17
0.68 0.11 0.21
Matches are distributed among these distances:
26 4 0.07
27 3 0.06
28 20 0.37
29 4 0.07
30 6 0.11
31 8 0.15
32 3 0.06
33 2 0.04
34 4 0.07
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (28 bp):
AATTTTTTTAATTTGTTTATAATTTTAA
Found at i:63840758 original size:27 final size:27
Alignment explanation
Indices: 63840728--63840905 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
63840718 ATATTGAGCC
* * *
63840728 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
63840755 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
63840782 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
63840810 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
63840837 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
63840864 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
63840891 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63840906 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:63840821 original size:55 final size:55
Alignment explanation
Indices: 63840728--63840905 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
63840718 ATATTGAGCC
* * *
63840728 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
63840782 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
63840837 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
63840891 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63840906 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:63840867 original size:82 final size:81
Alignment explanation
Indices: 63840749--63840904 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
63840739 TGCTATACAA
* * *
63840749 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
63840814 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
63840831 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
63840895 CACTTAGTGC
65 CACTTAGTGC
63840905 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63848638 original size:27 final size:27
Alignment explanation
Indices: 63848608--63848784 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
63848598 ATATTGAGCC
* * *
63848608 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
**
63848635 CGCACACTTAGTGC-ACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
63848661 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
63848689 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
63848716 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
63848743 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
63848770 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63848785 GTACAATTTA
Statistics
Matches: 123, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 22 0.18
27 78 0.63
28 23 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:63848700 original size:54 final size:54
Alignment explanation
Indices: 63848608--63848784 Score: 186
Period size: 54 Copynumber: 3.3 Consensus size: 54
63848598 ATATTGAGCC
* *
63848608 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCACGTAGTCAAAT
* *
63848661 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGC-CGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCACG--TAGTCAAAT
** * *
63848716 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGC-ACGTAGTCAAAT
63848770 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
63848785 GTACAATTTA
Statistics
Matches: 103, Mismatches: 10, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
51 2 0.02
52 1 0.01
53 18 0.17
54 56 0.54
55 25 0.24
56 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCACGTAGTCAAAT
Found at i:63848773 original size:81 final size:81
Alignment explanation
Indices: 63848629--63848783 Score: 222
Period size: 81 Copynumber: 1.9 Consensus size: 81
63848619 TGCTATACAA
* * *
63848629 TCAACTCGCACACTTAGTGCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCAC
1 TCAACTCGCACACTTAGTGCACATAATCAAATCGCACACTTAGTGCAACATAGTTAGAATCGCAC
63848694 ACTTAGTGCCGCATGG
66 ACTTAGTGCCGCATGG
* * ** *
63848710 TCAATTCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAG-TCGAATCGCA
1 TCAACTCGCACACTTAGTGCA-CATAATCAAATCGCACACTTAGTGCAACATAGTTAGAATCGCA
63848774 CACTTAGTGC
65 CACTTAGTGC
63848784 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
81 38 0.58
82 27 0.42
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCACATAATCAAATCGCACACTTAGTGCAACATAGTTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:63883403 original size:39 final size:40
Alignment explanation
Indices: 63883358--63883525 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
63883348 CGGGGTTTAG
* * *
63883358 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
63883397 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
63883437 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
63883477 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
63883518 CCGGATAT
1 CCGGATAT
63883526 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:63883508 original size:41 final size:40
Alignment explanation
Indices: 63883381--63883525 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
63883371 CTCGCACAAG
* * * * *
63883381 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
63883421 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
63883461 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
63883502 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
63883526 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:63898445 original size:10 final size:11
Alignment explanation
Indices: 63898430--63898474 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
63898420 ATTTTGATAT
*
63898430 ACATGATTTG-
1 ACATGATATGC
63898440 ACATGATATGC
1 ACATGATATGC
63898451 ACATGATATG-
1 ACATGATATGC
*
63898461 -TATGATATGC
1 ACATGATATGC
63898471 ACAT
1 ACAT
63898475 CATGTATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
9 8 0.28
10 9 0.31
11 12 0.41
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:63898456 original size:11 final size:10
Alignment explanation
Indices: 63898424--63898474 Score: 52
Period size: 9 Copynumber: 5.1 Consensus size: 10
63898414 CATGAGATTT
63898424 TGATAT-ACA
1 TGATATGACA
*
63898433 TGATTTGACA
1 TGATATGACA
63898443 TGATATGCACA
1 TGATATG-ACA
*
63898454 TGATATG-TA
1 TGATATGACA
63898463 TGATATGCACA
1 TGATATG-ACA
63898474 T
1 T
63898475 CATGTATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 13 0.38
10 9 0.26
11 12 0.35
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:63898576 original size:25 final size:26
Alignment explanation
Indices: 63898524--63898619 Score: 99
Period size: 26 Copynumber: 3.8 Consensus size: 26
63898514 GAGGAAGTGC
* *
63898524 AAAAGGGC-TATGCCCCAG-TTACAG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
*
63898548 AAAAGGGC-TTTGCCCTAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
* * *
63898573 AAAAGGGCTTTTGCCCCAATTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCG
* *
63898599 AAAAGGGCTTTTTCCCTAGTT
1 AAAAGGGCTTTTGCCCCAGTT
63898620 ATTAAAAGAG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
24 16 0.27
25 13 0.22
26 31 0.52
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCG
Found at i:63898621 original size:25 final size:25
Alignment explanation
Indices: 63898524--63898626 Score: 77
Period size: 25 Copynumber: 4.1 Consensus size: 25
63898514 GAGGAAGTGC
* *
63898524 AAAAGGGCTATGCCCC-AGTTA-CA
1 AAAAGGGCTTTTCCCCTAGTTATCA
* * *
63898547 GAAAAGGGC-TTTGCCCTAGTTTACCG
1 -AAAAGGGCTTTTCCCCTAG-TTATCA
* *
63898573 AAAAGGGCTTTTGCCCCAATTTATCA
1 AAAAGGGCTTTT-CCCCTAGTTATCA
* *
63898599 AAAAGGGCTTTTTCCCTAGTTATTA
1 AAAAGGGCTTTTCCCCTAGTTATCA
63898624 AAA
1 AAA
63898627 GAGGCTAGGC
Statistics
Matches: 61, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
23 4 0.07
24 10 0.16
25 23 0.38
26 20 0.33
27 4 0.07
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTTCCCCTAGTTATCA
Found at i:63898877 original size:31 final size:31
Alignment explanation
Indices: 63898839--63898922 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
63898829 TTGTTACAGT
63898839 AAAGGCTTCAGCCCAGTGATATGAATAATGA
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
* *
63898870 AAAGGCTTCAGCCCAATGATATGAATAATGT
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
**
63898901 AAAGGCTTTGGCCCAGT-ATATG
1 AAAGGCTTCAGCCCAGTGATATG
63898923 CTGAGATTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGAATAATGA
Found at i:63900780 original size:20 final size:21
Alignment explanation
Indices: 63900755--63900795 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
63900745 CTAAACTGAT
63900755 AACTTATG-AAATTTTA-AAAA
1 AACTTA-GAAAATTTTACAAAA
63900775 AACTTAGAAAATTTTACAAAA
1 AACTTAGAAAATTTTACAAAA
63900796 TACAGGGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.05
20 14 0.74
21 4 0.21
ACGTcount: A:0.56, C:0.07, G:0.05, T:0.32
Consensus pattern (21 bp):
AACTTAGAAAATTTTACAAAA
Found at i:63903458 original size:14 final size:14
Alignment explanation
Indices: 63903439--63903471 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
63903429 TTGTAGTTTG
63903439 AAATATATGATTCA
1 AAATATATGATTCA
*
63903453 AAATATATGATTCG
1 AAATATATGATTCA
63903467 AAATA
1 AAATA
63903472 AAGACCCACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (14 bp):
AAATATATGATTCA
Found at i:63906088 original size:41 final size:41
Alignment explanation
Indices: 63906041--63906211 Score: 168
Period size: 41 Copynumber: 4.2 Consensus size: 41
63906031 ACATAAAATT
** *
63906041 TGCTAGGC-ATAAAGCCTGGTATAATACACCGACATAGAGCC
1 TGCTAGGCAAT-AAGCCTGAAATAATACACCGACATAAAGCC
* * *
63906082 TGCTAGGCAAT-AGCTCTGAAATAATACACTGGCATAAAACC
1 TGCTAGGCAATAAGC-CTGAAATAATACACCGACATAAAGCC
*
63906123 TGCTAGGCAATAAGCCTGAAATAATACACC-AGCATAAAGCT
1 TGCTAGGCAATAAGCCTGAAATAATACACCGA-CATAAAGCC
* * * * * *
63906164 TGCTAGGCTATAAGCCTGATATAATTCATCGGCATAAAACC
1 TGCTAGGCAATAAGCCTGAAATAATACACCGACATAAAGCC
*
63906205 TACTAGG
1 TGCTAGG
63906212 TATAAAGGCA
Statistics
Matches: 107, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
40 3 0.03
41 99 0.93
42 5 0.05
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGAAATAATACACCGACATAAAGCC
Found at i:63906169 original size:82 final size:82
Alignment explanation
Indices: 63906032--63906218 Score: 211
Period size: 82 Copynumber: 2.3 Consensus size: 82
63906022 CCGTTGCTCA
** ** *
63906032 CATAAAATTTGCTAGGCATAAAGCCTGGTATAATACACCGACATAGAGCCTGCTAGGCAAT-AGC
1 CATAAAACCTGCTAGGCATAAAGCCTGAAATAATACACCGACATAAAGCCTGCTAGGCAATAAGC
63906096 TCTGAAATAATACA-CTGG
66 -CTGAAATAATACATC-GG
* *
63906114 CATAAAACCTGCTAGGCA-ATAAGCCTGAAATAATACACC-AGCATAAAGCTTGCTAGGCTATAA
1 CATAAAACCTGCTAGGCATA-AAGCCTGAAATAATACACCGA-CATAAAGCCTGCTAGGCAATAA
* *
63906177 GCCTGATATAATTCATCGG
64 GCCTGAAATAATACATCGG
* *
63906196 CATAAAACCTACTAGGTATAAAG
1 CATAAAACCTGCTAGGCATAAAG
63906219 GCAGAATCTC
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
81 2 0.02
82 82 0.92
83 5 0.06
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.23
Consensus pattern (82 bp):
CATAAAACCTGCTAGGCATAAAGCCTGAAATAATACACCGACATAAAGCCTGCTAGGCAATAAGC
CTGAAATAATACATCGG
Found at i:63907871 original size:27 final size:27
Alignment explanation
Indices: 63907833--63907886 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
63907823 TCTATTCAAG
63907833 ATTACTTATTATATTAGGGATCGATGC
1 ATTACTTATTATATTAGGGATCGATGC
63907860 ATTACTTATTATATTAGGGATCGATGC
1 ATTACTTATTATATTAGGGATCGATGC
63907887 CCCTGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.41
Consensus pattern (27 bp):
ATTACTTATTATATTAGGGATCGATGC
Found at i:63922188 original size:40 final size:40
Alignment explanation
Indices: 63922133--63922211 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
63922123 TTCATCAAAA
*
63922133 TTAAAAATTTGAGCATGGGTTTTGTAGTACTCGAAGCAAT
1 TTAAAAATTCGAGCATGGGTTTTGTAGTACTCGAAGCAAT
63922173 TTAAAAATTCGAGCATGGGTTTTGTAGTACTCGAAGCAA
1 TTAAAAATTCGAGCATGGGTTTTGTAGTACTCGAAGCAA
63922212 CGATCTCAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (40 bp):
TTAAAAATTCGAGCATGGGTTTTGTAGTACTCGAAGCAAT
Found at i:63934050 original size:20 final size:20
Alignment explanation
Indices: 63934022--63934065 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
63934012 ACCAAACTTG
*
63934022 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
63934042 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
63934062 CAAC
1 CAAC
63934066 TTAAACTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:63934262 original size:42 final size:43
Alignment explanation
Indices: 63934182--63934272 Score: 139
Period size: 42 Copynumber: 2.1 Consensus size: 43
63934172 TTTACATGGG
*
63934182 ATCTCATATCGATGCCAATAGCCCAGCTATGGTCTTACACAAA
1 ATCTCATATCGATGCCAATAGCCCAGATATGGTCTTACACAAA
* **
63934225 ATCTCATATCGATGCC-ATATCCCAGATATGGTCTTACACGTA
1 ATCTCATATCGATGCCAATAGCCCAGATATGGTCTTACACAAA
63934267 ATCTCA
1 ATCTCA
63934273 ACTAACCCTA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 28 0.64
43 16 0.36
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (43 bp):
ATCTCATATCGATGCCAATAGCCCAGATATGGTCTTACACAAA
Found at i:63943340 original size:40 final size:40
Alignment explanation
Indices: 63943296--63943400 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 40
63943286 AAGTGACCAT
63943296 ATCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGACTAAG-TCCCGAAGGCATTGGTGCGAGTTACTAA
** *
63943336 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGACTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-A
*
63943377 A-CCAGG-CTATGTCCCGAAGGCATT
1 ATCC-GGACTAAGTCCCGAAGGCATT
63943401 TGAACGAGGA
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
39 1 0.02
40 52 0.91
41 4 0.07
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATCCGGACTAAGTCCCGAAGGCATTGGTGCGAGTTACTAA
Found at i:63943401 original size:40 final size:40
Alignment explanation
Indices: 63943310--63943402 Score: 134
Period size: 40 Copynumber: 2.3 Consensus size: 40
63943300 GGACTAAGAT
* * *
63943310 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCAGGCTAAGTC
*
63943350 CCGAAGGCATTTGTGCGAGTTACTATAA-CCAGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCAGGCTAAGTC
63943390 CCGAAGGCATTTG
1 CCGAAGGCATTTG
63943403 AACGAGGAGC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 46 0.96
41 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCAGGCTAAGTC
Found at i:63948910 original size:40 final size:39
Alignment explanation
Indices: 63948846--63949057 Score: 264
Period size: 40 Copynumber: 5.3 Consensus size: 39
63948836 TCTTCGGAAT
* *
63948846 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
63948885 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
63948925 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
63948965 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
63949005 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
63949045 TTAGCCCGGATAT
1 TTAGCCCGGATAT
63949058 CATTCAAATG
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 10 0.07
40 131 0.89
41 7 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:63948973 original size:80 final size:80
Alignment explanation
Indices: 63948846--63949057 Score: 345
Period size: 80 Copynumber: 2.7 Consensus size: 80
63948836 TCTTCGGAAT
* * * * *
63948846 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
63948910 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
63948925 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
63948990 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
63949005 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
63949058 CATTCAAATG
Statistics
Matches: 122, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
79 4 0.03
80 118 0.97
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:63953737 original size:28 final size:28
Alignment explanation
Indices: 63953682--63953769 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 28
63953672 AGCATGGCTG
* * *
63953682 CCAG-AACAGAT-ATTGTGACAGAGTCA
1 CCAGAAACAGATAATTGGGGCAGAGCCA
* *
63953708 CCAGATACAGATAATTGGGGCAGGGCCA
1 CCAGAAACAGATAATTGGGGCAGAGCCA
* *
63953736 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGGGGCAGAGCCA
63953764 CCAGAA
1 CCAGAA
63953770 CGCTTCCTCC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 4 0.08
27 6 0.12
28 41 0.80
ACGTcount: A:0.36, C:0.22, G:0.26, T:0.16
Consensus pattern (28 bp):
CCAGAAACAGATAATTGGGGCAGAGCCA
Found at i:63955053 original size:15 final size:15
Alignment explanation
Indices: 63955002--63955053 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
63954992 CTATAGAGGG
63955002 AAAGAAGAAGAAGAGA
1 AAAGAA-AAGAAGAGA
* * *
63955018 AAATAGATGAAGAGA
1 AAAGAAAAGAAGAGA
**
63955033 GGAGAAAAGAAGAGA
1 AAAGAAAAGAAGAGA
63955048 AAAGAA
1 AAAGAA
63955054 TTGTCAAAAA
Statistics
Matches: 26, Mismatches: 10, Indels: 1
0.70 0.27 0.03
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.65, C:0.00, G:0.31, T:0.04
Consensus pattern (15 bp):
AAAGAAAAGAAGAGA
Found at i:63960241 original size:26 final size:28
Alignment explanation
Indices: 63960203--63960256 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
63960193 ATCATAGTAC
63960203 AAATCAGTCA-TTTACCCTCGAGGGGTA
1 AAATCAGTCATTTTACCCTCGAGGGGTA
* **
63960230 AAAT-AGTTATTTTACCCTTTAGGGGTA
1 AAATCAGTCATTTTACCCTCGAGGGGTA
63960257 TTTTGGTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTCGAGGGGTA
Found at i:63964053 original size:56 final size:56
Alignment explanation
Indices: 63963993--63964127 Score: 207
Period size: 56 Copynumber: 2.4 Consensus size: 56
63963983 TCCTAGATAG
* * **
63963993 GGTCTTACTCGCACACATATATCAGAATCGCATATCAATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAAAATCACATATCAATGCCAACATATTAAACGT
* *
63964049 GGTCTTACTCGCACACATATATCAAAATCACATATCGATGCTAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCAAAATCACATATCAATGCCAACATATTAAACGT
*
63964105 GGTCTTACTCGTACACATATATC
1 GGTCTTACTCGCACACATATATC
63964128 GATGCCATGG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 72 1.00
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAAAATCACATATCAATGCCAACATATTAAACGT
Found at i:63969902 original size:30 final size:30
Alignment explanation
Indices: 63969866--63969940 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
63969856 TATGATATGG
63969866 TATCTTGGATTTCTTTACCTTGGATATTTT
1 TATCTTGGATTTCTTTACCTTGGATATTTT
* * ** *
63969896 TATCTTGGATTCCTCTGTCTTGGATTTTTT
1 TATCTTGGATTTCTTTACCTTGGATATTTT
* *
63969926 TATTTTGGTTTTCTT
1 TATCTTGGATTTCTT
63969941 GTTATCTTCA
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.12, C:0.13, G:0.15, T:0.60
Consensus pattern (30 bp):
TATCTTGGATTTCTTTACCTTGGATATTTT
Found at i:63985950 original size:28 final size:28
Alignment explanation
Indices: 63985918--63985973 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
63985908 TACATGGGAG
*
63985918 TCAGAAGAAACCATGAGAAACTAATATC
1 TCAGAAGAAACCATGAGAAACCAATATC
63985946 TCAGAAGAAACCATGAGAAACCAATATC
1 TCAGAAGAAACCATGAGAAACCAATATC
63985974 CAAACATGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.50, C:0.20, G:0.14, T:0.16
Consensus pattern (28 bp):
TCAGAAGAAACCATGAGAAACCAATATC
Found at i:63986195 original size:23 final size:23
Alignment explanation
Indices: 63986169--63986215 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
63986159 AAATTTTATG
63986169 AGTAAGGTGTCCAATTGGAAAAT
1 AGTAAGGTGTCCAATTGGAAAAT
63986192 AGTAAGGTGTCCAATTGGAAAAT
1 AGTAAGGTGTCCAATTGGAAAAT
63986215 A
1 A
63986216 AGGACCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.26
Consensus pattern (23 bp):
AGTAAGGTGTCCAATTGGAAAAT
Found at i:63993277 original size:27 final size:27
Alignment explanation
Indices: 63993235--63993345 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
63993225 GGAAGCATCA
*
63993235 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
* *
63993262 TGGTGGCTCTGGCACATATT-TCAT-TTC
1 TGGTGGCTCTGCCACA-ATTATC-TGATC
*
63993289 TGGTGGCTCTGCCACGATTATCTGTATC
1 TGGTGGCTCTGCCACAATTATCTG-ATC
* * *
63993317 TGGTGACTCTGTCAC-ATTATCTGTTC
1 TGGTGGCTCTGCCACAATTATCTGATC
63993343 TGG
1 TGG
63993346 CAGCCATACT
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
26 9 0.13
27 42 0.60
28 19 0.27
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATC
Found at i:63993344 original size:54 final size:54
Alignment explanation
Indices: 63993235--63993345 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
63993225 GGAAGCATCA
* *
63993235 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGGCACATATTTCATTTC
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGGCACATATATCATTTC
* * *
63993289 TGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATC-TGTTC
1 TGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGGCACATATATCAT-TTC
63993343 TGG
1 TGG
63993346 CAGCCATACT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 1 0.02
54 31 0.62
55 18 0.36
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGGCACATATATCATTTC
Found at i:64003929 original size:38 final size:38
Alignment explanation
Indices: 64003905--64003981 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
64003895 CAAATTGAAG
* *
64003905 TGATTGATTAAAAACTAAAATTAACTAATTAAATAAAC
1 TGATTGATTAAAAACTAAAATTAACCAATCAAATAAAC
* *
64003943 TGATTGATTAAAAACTAAAATTAACTAATTAAATAAAC
1 TGATTGATTAAAAACTAAAATTAACCAATCAAATAAAC
64003981 T
1 T
64003982 AAAGAACACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.55, C:0.08, G:0.05, T:0.32
Consensus pattern (38 bp):
TGATTGATTAAAAACTAAAATTAACCAATCAAATAAAC
Found at i:64007602 original size:23 final size:23
Alignment explanation
Indices: 64007559--64007602 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
64007549 GTAATGCTTA
*
64007559 TCAAATCAAACATAAATAATAAT
1 TCAAATCAAAAATAAATAATAAT
*
64007582 TCAAAT-AAAAATTAATGAATA
1 TCAAATCAAAAATAAAT-AATA
64007603 GGGTTCCTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.27
Consensus pattern (23 bp):
TCAAATCAAAAATAAATAATAAT
Found at i:64007838 original size:36 final size:36
Alignment explanation
Indices: 64007740--64008081 Score: 175
Period size: 36 Copynumber: 9.6 Consensus size: 36
64007730 TATTCGACAA
* *
64007740 AATCAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAG
1 AATCAGTAGATATTGCTCG-TGGAGCACATTTAGTAG
* * * * *
64007776 AATAAGTAGACAATT-TTCATTTGAGCACATTTAGTAG
1 AATCAGTAGA-TATTGCTC-GTGGAGCACATTTAGTAG
* * *
64007813 GATGAGTAGATATTGCTCGTGGAGCACTTTTAGTAG
1 AATCAGTAGATATTGCTCGTGGAGCACATTTAGTAG
* *
64007849 AATCAGTAGATATTGCTCGT-----AC-TTCAATAG
1 AATCAGTAGATATTGCTCGTGGAGCACATTTAGTAG
* * * ** * *
64007879 AATCAATAAACATTGCTTATTTGAGCACATTCAGTAG
1 AATCAGTAGATATTGC-TCGTGGAGCACATTTAGTAG
* * * *
64007916 GATCAGTAGATACTGCTTGTTGAGCAC-TTTCAGTAG
1 AATCAGTAGATATTGCTCGTGGAGCACATTT-AGTAG
* * ** *
64007952 AATTAGTAGATATTGCTTGTTTAAGCAC-TTTCACTAG
1 AATCAGTAGATATTGCTCG-TGGAGCACATTT-AGTAG
* * * * * * *
64007989 AATAAGTAGACATGGCTCATTGAGCACTTTTAGAAG
1 AATCAGTAGATATTGCTCGTGGAGCACATTTAGTAG
* * * *
64008025 CATCAGTAGATATTGCTCATTTGAGCAC-TTTCAATAG
1 AATCAGTAGATATTGCTC-GTGGAGCACATTT-AGTAG
64008062 AATCAGTAGATATTGCTCGT
1 AATCAGTAGATATTGCTCGT
64008082 TTGACCACTT
Statistics
Matches: 238, Mismatches: 52, Indels: 32
0.74 0.16 0.10
Matches are distributed among these distances:
30 19 0.08
31 4 0.02
35 2 0.01
36 115 0.48
37 98 0.41
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (36 bp):
AATCAGTAGATATTGCTCGTGGAGCACATTTAGTAG
Found at i:64007979 original size:73 final size:72
Alignment explanation
Indices: 64007744--64008106 Score: 267
Period size: 73 Copynumber: 5.1 Consensus size: 72
64007734 CGACAAAATC
** * * * ** *
64007744 AGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAATAAGTAGACAATTTTCATTTGAGCACATTT
1 AGTAGATATTGCTTATTTGAGCACTTTCAATAGAATCAGTAGA-TATGCTC-GTTGAGCAC-TTT
* *
64007808 -AGTAGGATG
63 CAGTAGAATT
** * * *
64007817 AGTAGATATTGC-TCGTGGAGCACTTTTAGTAGAATCAGTAGATATTGCTCG-T----AC-TTCA
1 AGTAGATATTGCTTATTTGAGCACTTTCAATAGAATCAGTAGATA-TGCTCGTTGAGCACTTTCA
* *
64007875 ATAGAATC
65 GTAGAATT
* * * * * * *
64007883 AATAAACATTGCTTATTTGAGCACATTCAGTAGGATCAGTAGATACTGCTTGTTGAGCACTTTCA
1 AGTAGATATTGCTTATTTGAGCACTTTCAATAGAATCAGTAGATA-TGCTCGTTGAGCACTTTCA
64007948 GTAGAATT
65 GTAGAATT
* * * * * * *
64007956 AGTAGATATTGCTTGTTTAAGCACTTTCACTAGAATAAGTAGACATGGCTCATTGAGCACTTTTA
1 AGTAGATATTGCTTATTTGAGCACTTTCAATAGAATCAGTAGATAT-GCTCGTTGAGCACTTTCA
* * *
64008021 GAAGCATC
65 GTAGAATT
* *
64008029 AGTAGATATTGCTCATTTGAGCACTTTCAATAGAATCAGTAGATATTGCTCGTTTGACCACTTTC
1 AGTAGATATTGCTTATTTGAGCACTTTCAATAGAATCAGTAGATA-TGCTCG-TTGAGCACTTTC
64008094 AGTAGAATT
64 AGTAGAATT
64008103 AGTA
1 AGTA
64008107 TTCCATTTTT
Statistics
Matches: 223, Mismatches: 54, Indels: 25
0.74 0.18 0.08
Matches are distributed among these distances:
65 2 0.01
66 15 0.07
67 33 0.15
68 1 0.00
71 1 0.00
72 11 0.05
73 139 0.62
74 21 0.09
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (72 bp):
AGTAGATATTGCTTATTTGAGCACTTTCAATAGAATCAGTAGATATGCTCGTTGAGCACTTTCAG
TAGAATT
Found at i:64007990 original size:37 final size:37
Alignment explanation
Indices: 64007871--64008106 Score: 233
Period size: 37 Copynumber: 6.4 Consensus size: 37
64007861 TTGCTCGTAC
* * * * * *
64007871 TTCAATAGAATCAATAAACATTGCTTATTTGAGCACA
1 TTCAGTAGAATCAGTAGATATTGCTTGTTTGAGCACT
* *
64007908 TTCAGTAGGATCAGTAGATACTGCTTG-TTGAGCACT
1 TTCAGTAGAATCAGTAGATATTGCTTGTTTGAGCACT
* *
64007944 TTCAGTAGAATTAGTAGATATTGCTTGTTTAAGCACT
1 TTCAGTAGAATCAGTAGATATTGCTTGTTTGAGCACT
* * * * **
64007981 TTCACTAGAATAAGTAGACATGGC-TCATTGAGCACT
1 TTCAGTAGAATCAGTAGATATTGCTTGTTTGAGCACT
* * * **
64008017 TTTAGAAGCATCAGTAGATATTGCTCATTTGAGCACT
1 TTCAGTAGAATCAGTAGATATTGCTTGTTTGAGCACT
* * *
64008054 TTCAATAGAATCAGTAGATATTGCTCGTTTGACCACT
1 TTCAGTAGAATCAGTAGATATTGCTTGTTTGAGCACT
*
64008091 TTCAGTAGAATTAGTA
1 TTCAGTAGAATCAGTA
64008107 TTCCATTTTT
Statistics
Matches: 160, Mismatches: 37, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
36 58 0.36
37 102 0.64
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (37 bp):
TTCAGTAGAATCAGTAGATATTGCTTGTTTGAGCACT
Found at i:64012735 original size:17 final size:17
Alignment explanation
Indices: 64012713--64012746 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
64012703 TAGAACTTAA
64012713 TTATAAATCATTTGAGT
1 TTATAAATCATTTGAGT
64012730 TTATAAATCATTTGAGT
1 TTATAAATCATTTGAGT
64012747 CCTAATTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (17 bp):
TTATAAATCATTTGAGT
Found at i:64013107 original size:16 final size:17
Alignment explanation
Indices: 64013080--64013114 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
64013070 AATAATCAGG
*
64013080 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
64013097 TTGAG-AAATTAATTAA
1 TTGAGAAAATTAATTAA
64013113 TT
1 TT
64013115 TAATTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:64016655 original size:16 final size:16
Alignment explanation
Indices: 64016636--64016666 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64016626 CTTCTTCACT
64016636 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
64016652 TACTTACTTACTTAA
1 TACTCACTTACTTAA
64016667 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:64016672 original size:20 final size:20
Alignment explanation
Indices: 64016633--64016672 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
64016623 AAACTTCTTC
* *
64016633 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
64016653 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
64016673 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:64017057 original size:108 final size:110
Alignment explanation
Indices: 64016905--64017105 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
64016895 ATCCTTTTGA
* * *
64016905 AACTTACCATTGCAATGTCTTGACATGGTCTTACATGGTATCCTTTCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCAATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
* *
64016968 -TGCCATGCCTTGGCATGGTTTTACATGGGACCTTTGCCTTATAGT
65 TTGACATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
64017013 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCAATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
64017078 TGACATGCCTTGGCATGGTCTTACATGG
66 TGACATGCCTTGGCATGGTCTTACATGG
64017106 TATCCTTAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.58
109 7 0.09
110 26 0.32
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCAATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGACATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:64017060 original size:55 final size:53
Alignment explanation
Indices: 64016905--64017112 Score: 197
Period size: 55 Copynumber: 3.8 Consensus size: 53
64016895 ATCCTTTTGA
* * * *
64016905 AACTTACCATTGCAATGTCTTGACATGGTCTTACATGGTATCCTTTCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTGCCTTATAG
* * * *
64016958 AACTCACCAATGCCATGCCTTGGCATGGTTTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCC-TTGCCTTATAG
* * * *
64017012 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-TATCCTTGCCTTATAG
* *
64017066 AACCTTACCAATTGACATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACAT-GTATCCTT
64017113 AAACCCTAAT
Statistics
Matches: 126, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
52 2 0.02
53 43 0.34
54 9 0.07
55 69 0.55
56 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGTATCCTTGCCTTATAG
Found at i:64023813 original size:27 final size:27
Alignment explanation
Indices: 64023782--64023959 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
64023772 TAAATTGTAC
64023782 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
64023809 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64023835 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
64023863 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
64023891 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64023918 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
64023945 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64023960 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:64023896 original size:82 final size:81
Alignment explanation
Indices: 64023783--64023938 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
64023773 AAATTGTACA
* *
64023783 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
64023847 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
64023864 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
64023929 TGCGAGTTGA
65 TGCGAATTGA
64023939 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:64023950 original size:82 final size:81
Alignment explanation
Indices: 64023779--64023959 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
64023769 GATTAAATTG
* *
64023779 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
64023844 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
64023860 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
64023924 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
64023942 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
64023960 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:64027040 original size:16 final size:16
Alignment explanation
Indices: 64027021--64027051 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64027011 CTTCTTCACT
64027021 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
64027037 TACTTACTTACTTAA
1 TACTCACTTACTTAA
64027052 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:64027057 original size:20 final size:20
Alignment explanation
Indices: 64027018--64027057 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
64027008 AAACTTCTTC
* *
64027018 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
64027038 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
64027058 TTATAAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:64027448 original size:55 final size:53
Alignment explanation
Indices: 64027290--64027497 Score: 206
Period size: 55 Copynumber: 3.8 Consensus size: 53
64027280 ATCCTTTTGA
* * *
64027290 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTTCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTCCCTTATAG
* * * *
64027343 AACTCACCAATGCCATGCCATGGCATGGTCTTACATGGGA-CCTTTCCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCC-TTCCCTTATAG
* * * * *
64027397 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-TATCCTTCCCTTATAG
*
64027451 AACCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACAT-GTATCCTT
64027498 AAACCCTAAT
Statistics
Matches: 127, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
52 2 0.02
53 44 0.35
54 9 0.07
55 69 0.54
56 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGTATCCTTCCCTTATAG
Found at i:64032118 original size:93 final size:93
Alignment explanation
Indices: 64032016--64032202 Score: 374
Period size: 93 Copynumber: 2.0 Consensus size: 93
64032006 AAATATGGTC
64032016 ATTCAAAAAAAGTACCTAGAATGTAAATGTGCAAAGCATAGTTACCTTTGATATGAAGGAAGCTT
1 ATTCAAAAAAAGTACCTAGAATGTAAATGTGCAAAGCATAGTTACCTTTGATATGAAGGAAGCTT
64032081 CTCACTCTACTAGGCTGATCAGTTTGTA
66 CTCACTCTACTAGGCTGATCAGTTTGTA
64032109 ATTCAAAAAAAGTACCTAGAATGTAAATGTGCAAAGCATAGTTACCTTTGATATGAAGGAAGCTT
1 ATTCAAAAAAAGTACCTAGAATGTAAATGTGCAAAGCATAGTTACCTTTGATATGAAGGAAGCTT
64032174 CTCACTCTACTAGGCTGATCAGTTTGTA
66 CTCACTCTACTAGGCTGATCAGTTTGTA
64032202 A
1 A
64032203 GTAATTCAAA
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 94 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (93 bp):
ATTCAAAAAAAGTACCTAGAATGTAAATGTGCAAAGCATAGTTACCTTTGATATGAAGGAAGCTT
CTCACTCTACTAGGCTGATCAGTTTGTA
Found at i:64035959 original size:50 final size:51
Alignment explanation
Indices: 64035816--64035972 Score: 160
Period size: 50 Copynumber: 3.1 Consensus size: 51
64035806 AATGACCTTA
* * *
64035816 TATATTCGGCCACATAGGTATGTACATATGTGATGTTGTA-TTGGATCTTG
1 TATATTCGGCCATATAGGTATGTACATATGTGATGTTATATTTGAATCTTG
* * * * * *
64035866 AATATTCGGGCATGA-AGGTATGCACAAATGTGTTATTATATTTGAAT-TTG
1 TATATTCGGCCAT-ATAGGTATGTACATATGTGATGTTATATTTGAATCTTG
* * *
64035916 TATATTCGGCCATATAAGTAAGTACATATGTGATGTTAAATTTG-ATCTTG
1 TATATTCGGCCATATAGGTATGTACATATGTGATGTTATATTTGAATCTTG
*
64035966 CATATTC
1 TATATTC
64035973 TGTAACACCC
Statistics
Matches: 84, Mismatches: 19, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
49 3 0.04
50 75 0.89
51 6 0.07
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.39
Consensus pattern (51 bp):
TATATTCGGCCATATAGGTATGTACATATGTGATGTTATATTTGAATCTTG
Found at i:64039096 original size:25 final size:25
Alignment explanation
Indices: 64039066--64039116 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
64039056 GAAAGAGATG
64039066 AACTTTTCATGCATATTCATGTTTT
1 AACTTTTCATGCATATTCATGTTTT
*
64039091 AACTTTTCATGCATTTTCATGTTTT
1 AACTTTTCATGCATATTCATGTTTT
64039116 A
1 A
64039117 TTTATTTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.08, T:0.53
Consensus pattern (25 bp):
AACTTTTCATGCATATTCATGTTTT
Found at i:64042119 original size:46 final size:46
Alignment explanation
Indices: 64042066--64042281 Score: 233
Period size: 46 Copynumber: 4.6 Consensus size: 46
64042056 ATTGTTGGCT
* *
64042066 AGTGTAAGACATGTCTGGGACATGCATCGGCCA-GATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATGA-GACGAGAGCC
* *
64042112 AGTGTAAGACCATGTCTGGGACATCGCATCAG-CATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-TGAGACGAGAGCC
*
64042160 AGTGTAAGATATGTCTGGGACATGCATCGGCC-TCGAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAT-GAGACG-AGAGCC
* * * * * *
64042206 AGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATGAGACGAGAGCC
64042252 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
64042282 AGCACCTTAC
Statistics
Matches: 145, Mismatches: 14, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
45 2 0.01
46 70 0.48
47 44 0.30
48 27 0.19
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATGAGACGAGAGCC
Found at i:64042281 original size:94 final size:94
Alignment explanation
Indices: 64042063--64042281 Score: 261
Period size: 94 Copynumber: 2.3 Consensus size: 94
64042053 GTTATTGTTG
* *
64042063 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATGACGAGAGCCAGTGTAAGACCATGTC
*
64042128 TGGGACATCGCATCAGCATTGAGACGAGA
66 TGGGACATCGCATCAGCATCGAGACGAGA
* *
64042157 GCTAGTGTAAGATATGTCTGGGACATGCATCGGCCTCGA-GACGTA-AGCCAGTGTAAGA-CATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-AGATGACG-AGAGCCAGTGTAAGACCATG
* * * *
64042219 TTTGGGACAT-GCATCGGC-TACGAGATGATA
64 TCTGGGACATCGCATCAGCAT-CGAGACGAGA
64042249 G-TCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATC
64042282 AGCACCTTAC
Statistics
Matches: 109, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
91 2 0.02
92 24 0.22
93 26 0.24
94 54 0.50
95 3 0.03
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATGACGAGAGCCAGTGTAAGACCATGTC
TGGGACATCGCATCAGCATCGAGACGAGA
Found at i:64043344 original size:21 final size:21
Alignment explanation
Indices: 64043312--64043358 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
64043302 TTTTCATTGA
*
64043312 AAACCCTTTTAAAAT-AAAAG
1 AAACCCTATTAAAATAAAAAG
**
64043332 AAACCCTAATTAACTTAAAAAG
1 AAACCCT-ATTAAAATAAAAAG
64043354 AAACC
1 AAACC
64043359 TTTCAGTTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 7 0.32
21 5 0.23
22 10 0.45
ACGTcount: A:0.55, C:0.19, G:0.04, T:0.21
Consensus pattern (21 bp):
AAACCCTATTAAAATAAAAAG
Found at i:64043436 original size:35 final size:36
Alignment explanation
Indices: 64043381--64043458 Score: 140
Period size: 35 Copynumber: 2.2 Consensus size: 36
64043371 AGCCTTGTTT
*
64043381 AAAACATTTAAAAAAAACTTAATTGTAGAAACGTAG
1 AAAACATTAAAAAAAAACTTAATTGTAGAAACGTAG
64043417 AAAAC-TTAAAAAAAAACTTAATTGTAGAAACGTAG
1 AAAACATTAAAAAAAAACTTAATTGTAGAAACGTAG
64043452 AAAACAT
1 AAAACAT
64043459 ACTTTAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
35 34 0.85
36 6 0.15
ACGTcount: A:0.58, C:0.09, G:0.10, T:0.23
Consensus pattern (36 bp):
AAAACATTAAAAAAAAACTTAATTGTAGAAACGTAG
Found at i:64044428 original size:28 final size:29
Alignment explanation
Indices: 64044396--64044457 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
64044386 TACCTGTATC
* *
64044396 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCAGTAAGCCCAAATCACATTCATA
* *
64044424 TGGCCCAGTAGGCCCAAATCACATTTATA
1 TGGCCCAGTAAGCCCAAATCACATTCATA
64044453 TGGCC
1 TGGCC
64044458 TGTTAGACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (29 bp):
TGGCCCAGTAAGCCCAAATCACATTCATA
Found at i:64044705 original size:8 final size:8
Alignment explanation
Indices: 64044692--64044726 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
64044682 GTAGCTAAAC
64044692 TTTCGGCT
1 TTTCGGCT
*
64044700 TTTCGGCG
1 TTTCGGCT
64044708 TTTCGGCT
1 TTTCGGCT
64044716 TTTCGGCT
1 TTTCGGCT
64044724 TTT
1 TTT
64044727 TGGCATTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.00, C:0.23, G:0.26, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:64044735 original size:16 final size:16
Alignment explanation
Indices: 64044692--64044735 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 16
64044682 GTAGCTAAAC
*
64044692 TTTCGGCTTTTCGGCG
1 TTTCGGCATTTCGGCG
* *
64044708 TTTCGGCTTTTCGGCT
1 TTTCGGCATTTCGGCG
*
64044724 TTTTGGCATTTC
1 TTTCGGCATTTC
64044736 ATCTTTTGTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.02, C:0.23, G:0.25, T:0.50
Consensus pattern (16 bp):
TTTCGGCATTTCGGCG
Found at i:64044741 original size:24 final size:24
Alignment explanation
Indices: 64044692--64044742 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
64044682 GTAGCTAAAC
* *
64044692 TTTCGGCTTTTCGGCGTTTCGGCT
1 TTTCGGCTTTTCGGCATTTCAGCT
* *
64044716 TTTCGGCTTTTTGGCATTTCATCT
1 TTTCGGCTTTTCGGCATTTCAGCT
64044740 TTT
1 TTT
64044743 GTCGATACAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.04, C:0.22, G:0.22, T:0.53
Consensus pattern (24 bp):
TTTCGGCTTTTCGGCATTTCAGCT
Found at i:64045861 original size:16 final size:16
Alignment explanation
Indices: 64045842--64045874 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
64045832 CGAGAATTCA
64045842 GGATTTCGAGATTTTT
1 GGATTTCGAGATTTTT
*
64045858 GGATTTCGTGATTTTT
1 GGATTTCGAGATTTTT
64045874 G
1 G
64045875 AGGCGTTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.27, T:0.52
Consensus pattern (16 bp):
GGATTTCGAGATTTTT
Found at i:64051279 original size:37 final size:37
Alignment explanation
Indices: 64051229--64051307 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
64051219 TTATTACGAA
* *
64051229 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
64051266 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
64051303 GTCTT
1 GTCTT
64051308 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:64051504 original size:47 final size:47
Alignment explanation
Indices: 64051426--64051988 Score: 915
Period size: 47 Copynumber: 12.1 Consensus size: 47
64051416 CCCTTCGGGA
* * * * * * *
64051426 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
64051473 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64051520 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64051567 CTTAT-ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64051613 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64051660 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64051707 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64051754 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64051801 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64051850 CTTATC-CATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64051896 CTTATC-C--ATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64051940 CTTATCAC--ATATACACTTTCACAGTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64051985 CTTA
1 CTTA
64051989 CTATCATTTC
Statistics
Matches: 494, Mismatches: 18, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
44 43 0.09
45 40 0.08
46 91 0.18
47 275 0.56
48 1 0.00
49 44 0.09
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64055775 original size:40 final size:40
Alignment explanation
Indices: 64055691--64055829 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
64055681 CATGATTGCT
* ** *
64055691 CTTCGGGACTTAGCCCGGATACA-TCGC-TAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
* *
64055730 TCTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCACCAATGC
1 -CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAATGC
* * * *
64055771 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCACAATGC
64055811 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
64055830 CATCATTCGA
Statistics
Matches: 81, Mismatches: 14, Indels: 8
0.79 0.14 0.08
Matches are distributed among these distances:
39 3 0.04
40 60 0.74
41 18 0.22
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTTAGCACAATGC
Found at i:64056176 original size:29 final size:29
Alignment explanation
Indices: 64056137--64056215 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
64056127 CTTAATAATC
*
64056137 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
64056167 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
64056196 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
64056216 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:64056258 original size:43 final size:43
Alignment explanation
Indices: 64056197--64056299 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
64056187 TGCATTTCAA
64056197 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
64056240 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
64056283 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
64056300 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:64058214 original size:37 final size:37
Alignment explanation
Indices: 64058164--64058242 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
64058154 TTATTACGAA
* *
64058164 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
64058201 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
64058238 GTCTT
1 GTCTT
64058243 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:64058429 original size:45 final size:46
Alignment explanation
Indices: 64058363--64058493 Score: 174
Period size: 45 Copynumber: 2.8 Consensus size: 46
64058353 CTTCGGGACT
* * * * * *
64058363 TATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCC
* *
64058409 -CTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCC
64058454 TTATCACATATATACACTTTCACATTCATCACATCGGCCA
1 -TATCACATATATACACTTTCACATTCATCACATCGGCCA
64058494 TTCACATCGG
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
45 37 0.50
47 37 0.50
ACGTcount: A:0.27, C:0.33, G:0.09, T:0.31
Consensus pattern (46 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCC
Found at i:64058476 original size:47 final size:47
Alignment explanation
Indices: 64058361--64058934 Score: 765
Period size: 47 Copynumber: 12.1 Consensus size: 47
64058351 CCCTTCGGGA
* * * * * * *
64058361 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64058408 C--CTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64058453 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCACATCGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT---A--GGC
* * * * *
64058504 C-TATTAGGCCT-TAT-CACATATATACACTTTCA-CATTCATCACATCGGCATTAGGC
1 CTTATCA--CATATATACAC-T-T-T-CACATTCATCA--CAT--C--GGCCATTAGGC
*
64058559 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64058606 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64058653 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
64058700 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64058747 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64058793 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64058839 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64058884 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
64058931 CTTA
1 CTTA
64058935 CTATCATTTC
Statistics
Matches: 477, Mismatches: 23, Indels: 54
0.86 0.04 0.10
Matches are distributed among these distances:
44 28 0.06
45 53 0.11
46 62 0.13
47 265 0.56
49 1 0.00
50 8 0.02
51 8 0.02
52 12 0.03
53 6 0.01
54 12 0.03
55 8 0.02
56 8 0.02
57 1 0.00
59 5 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:64058510 original size:60 final size:60
Alignment explanation
Indices: 64058435--64058551 Score: 225
Period size: 60 Copynumber: 1.9 Consensus size: 60
64058425 TTCACATTCA
64058435 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
1 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
*
64058495 TCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
64058552 ATTAGGCCTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (60 bp):
TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
Found at i:64063707 original size:29 final size:29
Alignment explanation
Indices: 64063641--64063742 Score: 113
Period size: 29 Copynumber: 3.6 Consensus size: 29
64063631 TACCTGTATC
*
64063641 TGGCCCATTAAGCCC-AATCA-TATTCATA
1 TGGCCCATTAGGCCCAAATCACTATT-ATA
* *
64063669 TAGCCTATTAGGCCCAAATCACCTATT-TA
1 TGGCCCATTAGGCCCAAATCA-CTATTATA
64063698 TGGCCCATTAGGCCCAAATCAC-ATTTATA
1 TGGCCCATTAGGCCCAAATCACTA-TTATA
*
64063727 TGGCCCGTTAGGCCCA
1 TGGCCCATTAGGCCCA
64063743 GTCACATTCA
Statistics
Matches: 63, Mismatches: 6, Indels: 9
0.81 0.08 0.12
Matches are distributed among these distances:
27 1 0.02
28 15 0.24
29 43 0.68
31 4 0.06
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACTATTATA
Found at i:64065605 original size:40 final size:40
Alignment explanation
Indices: 64065511--64065655 Score: 166
Period size: 40 Copynumber: 3.6 Consensus size: 40
64065501 TACTCGAATG
* *
64065511 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * * *
64065552 ACATCCGGACTAAGAT-CCGAAGGGATCTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
64065592 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
64065632 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
64065656 CTTGTGCGAG
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.69
41 25 0.29
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:64073551 original size:40 final size:40
Alignment explanation
Indices: 64073457--64073601 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
64073447 TACTCGAATG
*
64073457 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
64073498 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
64073538 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
64073578 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
64073602 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:64074634 original size:16 final size:16
Alignment explanation
Indices: 64074613--64074645 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
64074603 ATATGTATAG
64074613 ATTCCTCTTTGAGTCT
1 ATTCCTCTTTGAGTCT
64074629 ATTCCTCTTTGAGTCT
1 ATTCCTCTTTGAGTCT
64074645 A
1 A
64074646 GTTTCTATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.15, C:0.24, G:0.12, T:0.48
Consensus pattern (16 bp):
ATTCCTCTTTGAGTCT
Found at i:64086038 original size:21 final size:20
Alignment explanation
Indices: 64086008--64086046 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
64085998 TTGAGTTGGT
*
64086008 CACACGGGCGTGTTGCCCTTC
1 CACACAGGCGTG-TGCCCTTC
64086029 CACACAGGCGTGTGCCCT
1 CACACAGGCGTGTGCCCT
64086047 GTTTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.38, G:0.28, T:0.21
Consensus pattern (20 bp):
CACACAGGCGTGTGCCCTTC
Found at i:64089248 original size:46 final size:46
Alignment explanation
Indices: 64089188--64089552 Score: 457
Period size: 46 Copynumber: 7.9 Consensus size: 46
64089178 TTTGACATGA
* * * * * * *
64089188 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCACGT
** *
64089234 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTT-ATATCACGT
* *
64089280 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCACGT
* ** *
64089326 TGTCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTT-ATATCACGT
* * *
64089372 TGCCATGGTATCTTTCAACCATGGTTTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCACGT
**
64089418 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTT-ATATCACGT
* *
64089464 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCACGT
* *
64089510 TTCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCA
64089553 AAGAGCACAC
Statistics
Matches: 279, Mismatches: 34, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
45 10 0.04
46 260 0.93
47 9 0.03
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCACGT
Found at i:64089345 original size:92 final size:92
Alignment explanation
Indices: 64089188--64089538 Score: 594
Period size: 92 Copynumber: 3.8 Consensus size: 92
64089178 TTTGACATGA
* * * * ** * *
64089188 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
64089253 CATGGTCTTATTCTTTTCATGTCACGT
66 CATGGTCTTATTCTTTTCATGTCACGT
*
64089280 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGTCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
64089345 CATGGTCTTATTCTTTTCATGTCACGT
66 CATGGTCTTATTCTTTTCATGTCACGT
*
64089372 TGCCATGGTATCTTTCAACCATGGTTTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
*
64089437 CATGGTCTTATTCTTTTCATATCACGT
66 CATGGTCTTATTCTTTTCATGTCACGT
*
64089464 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTTCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
64089529 CATGGTCTTA
66 CATGGTCTTA
64089539 CACATTTCAT
Statistics
Matches: 245, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 245 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.42
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCTTTTCATGTCACGT
Found at i:64089446 original size:138 final size:138
Alignment explanation
Indices: 64089188--64089552 Score: 516
Period size: 138 Copynumber: 2.6 Consensus size: 138
64089178 TTTGACATGA
* * * * *
64089188 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTT-TTGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTC-TTTTCATGTCACGTTGCCATGGTATCTTTCAA
** * *
64089252 CCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
65 CCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
*
64089317 ATATCAGGT
130 ATATCACGT
* *
64089326 TGTCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
* * ** *
64089391 CATGGTTTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCA
66 CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
64089456 TATCACGT
131 TATCACGT
* * * * *
64089464 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTTCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
64089529 CATGGTCTTACACATTTCATATCA
66 CATGGTCTTACACATTTCATATCA
64089553 AAGAGCACAC
Statistics
Matches: 201, Mismatches: 25, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
137 4 0.02
138 197 0.98
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCTTTTCATGTCACGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TATCACGT
Found at i:64092799 original size:27 final size:28
Alignment explanation
Indices: 64092759--64092836 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 28
64092749 AGGAAGCGTC
64092759 CTGGTGGCTCTGCCACAATTATCTGT-T
1 CTGGTGGCTCTGCCACAATTATCTGTAT
* * *
64092786 CTGGTGGTTTTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGTAT
* *
64092814 CTGGTGACTCTGTCAC-ATTATCT
1 CTGGTGGCTCTGCCACAATTATCT
64092837 ATTCTGGCAG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 30 0.70
28 13 0.30
ACGTcount: A:0.15, C:0.23, G:0.22, T:0.40
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATTATCTGTAT
Found at i:64095191 original size:5 final size:5
Alignment explanation
Indices: 64095181--64095212 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
64095171 GATGTCAACC
64095181 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
64095213 TTTAAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:64100665 original size:13 final size:13
Alignment explanation
Indices: 64100647--64100675 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
64100637 TTTAGTTTAA
64100647 TTAGTTAATTAGT
1 TTAGTTAATTAGT
64100660 TTAGTTAATTAGT
1 TTAGTTAATTAGT
64100673 TTA
1 TTA
64100676 ATAAACAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:64106097 original size:14 final size:14
Alignment explanation
Indices: 64106074--64106104 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
64106064 TCCTCTTATC
64106074 TTTTTATTTTTCTT
1 TTTTTATTTTTCTT
*
64106088 TTTTTCTTTTTCTT
1 TTTTTATTTTTCTT
64106102 TTT
1 TTT
64106105 ATTTTCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTTATTTTTCTT
Found at i:64106097 original size:20 final size:20
Alignment explanation
Indices: 64106072--64106109 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
64106062 AATCCTCTTA
*
64106072 TCTTTTTATTTTTCTTTTTT
1 TCTTTTTATTTTTATTTTTT
*
64106092 TCTTTTTCTTTTTATTTT
1 TCTTTTTATTTTTATTTT
64106110 CATTTCAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (20 bp):
TCTTTTTATTTTTATTTTTT
Found at i:64109024 original size:13 final size:13
Alignment explanation
Indices: 64109006--64109034 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
64108996 TTTACTTTAA
64109006 TTAGTTAATTAGT
1 TTAGTTAATTAGT
64109019 TTAGTTAATTAGT
1 TTAGTTAATTAGT
64109032 TTA
1 TTA
64109035 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:64111747 original size:14 final size:14
Alignment explanation
Indices: 64111728--64111754 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
64111718 ATATTTAACT
64111728 TGTTCTTAATTATG
1 TGTTCTTAATTATG
64111742 TGTTCTTAATTAT
1 TGTTCTTAATTAT
64111755 TGTCTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.11, T:0.59
Consensus pattern (14 bp):
TGTTCTTAATTATG
Found at i:64121436 original size:68 final size:67
Alignment explanation
Indices: 64121364--64121510 Score: 165
Period size: 67 Copynumber: 2.2 Consensus size: 67
64121354 CATCATGTGT
* * * *
64121364 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
64121426 ATGTAG
62 ATGTAG
** * *
64121432 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
64121497 AG
66 AG
64121499 ACAAGAGAGCTA
1 ACAAGAGAGCTA
64121511 TGAGATAAAC
Statistics
Matches: 68, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 24 0.35
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:64121469 original size:64 final size:64
Alignment explanation
Indices: 64121388--64121571 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
64121378 AGACATTATG
* *
64121388 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * * *
64121452 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTATGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
64121517 AA
63 AA
* * * *
64121519 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
64121572 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 16 0.16
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:64125626 original size:14 final size:14
Alignment explanation
Indices: 64125607--64125638 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
64125597 CTATTTTTAT
*
64125607 GGATTTGATGAATC
1 GGATTTGATAAATC
64125621 GGATTTGATAAATC
1 GGATTTGATAAATC
64125635 GGAT
1 GGAT
64125639 CTTTAGACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.34
Consensus pattern (14 bp):
GGATTTGATAAATC
Found at i:64133592 original size:49 final size:47
Alignment explanation
Indices: 64133538--64133663 Score: 157
Period size: 48 Copynumber: 2.6 Consensus size: 47
64133528 ATGAGATTTC
* *
64133538 GTGTAAGACCATGTCTGGGACATGGCATCGACATTTGA-GATG-TGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCG----GTGATAATGATGTGCCT
*
64133587 GTGTAAGACCATGTCTGGGACATTGCATCGGTGATAATGTATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATAATG-ATGTGCCT
*
64133635 GTGTAAGAACATGTCTGGGACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
64133664 ATCGATGATA
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
45 3 0.04
46 3 0.04
48 34 0.49
49 29 0.42
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGTGATAATGATGTGCCT
Found at i:64138594 original size:40 final size:40
Alignment explanation
Indices: 64138549--64138700 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 40
64138539 ATAACCACAA
* * *
64138549 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
64138589 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
64138629 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
64138669 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
64138701 CATTCAAATG
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 97 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:64146743 original size:40 final size:40
Alignment explanation
Indices: 64146698--64146889 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
64146688 ATAACCACAA
* * *
64146698 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
64146738 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
64146778 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
64146818 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
64146858 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
64146890 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:64146782 original size:80 final size:80
Alignment explanation
Indices: 64146669--64146888 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
64146659 ACCCAAGTTT
* * * * * * * * *
64146669 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
64146732 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
64146748 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
64146812 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
64146828 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
64146889 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:64151886 original size:48 final size:49
Alignment explanation
Indices: 64151781--64151895 Score: 128
Period size: 48 Copynumber: 2.4 Consensus size: 49
64151771 ATTCTGTGTG
* * * * *
64151781 AGACCATGTCTAGGACATGGCTTCGACATCTGAGATGTGTGCTTGTGTA
1 AGACCATGTCTGGGACATGGCATCGACATATGAGATGTGTGATTATGTA
* *
64151830 AGACCATGTCTGGGACATGGCATCGGCA-ATGATATGTG-GATTCATGTA
1 AGACCATGTCTGGGACATGGCATCGACATATGAGATGTGTGATT-ATGTA
64151878 AGACCATGT-TGGGGACAT
1 AGACCATGTCT-GGGACAT
64151896 AGAATTGGTA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
47 4 0.07
48 28 0.49
49 25 0.44
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (49 bp):
AGACCATGTCTGGGACATGGCATCGACATATGAGATGTGTGATTATGTA
Found at i:64153284 original size:19 final size:19
Alignment explanation
Indices: 64153260--64153299 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
64153250 CATAGCCATG
64153260 AAGTAATTGTATGATAAGT
1 AAGTAATTGTATGATAAGT
64153279 AAGTAATTGTATGATAAGT
1 AAGTAATTGTATGATAAGT
64153298 AA
1 AA
64153300 ATAAGACGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.20, T:0.35
Consensus pattern (19 bp):
AAGTAATTGTATGATAAGT
Found at i:64163899 original size:46 final size:45
Alignment explanation
Indices: 64163817--64164011 Score: 169
Period size: 46 Copynumber: 4.2 Consensus size: 45
64163807 CCTAGGCACG
* * * * *
64163817 GTCTTATACTGGCTCATATCTT-AAGTCGATGCCATGTCCTAGACAT
1 GTCTTACACTGGCTTA-ATCTTGTAGCCGATG-CATGTCCCAGACAT
* *
64163863 ATCTTACACTGACTATAATCTTGTAGCCGATGCATGTCCCAGACAT
1 GTCTTACACTGGCT-TAATCTTGTAGCCGATGCATGTCCCAGACAT
* * *
64163909 GTCTTACACTGGCTTACGTCTCG-AGGCCGTTGCATGTCCCAGACAT
1 GTCTTACACTGGCTTA-ATCTTGTA-GCCGATGCATGTCCCAGACAT
* ** * * *
64163955 GGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCTCAGACAT
1 -GTCTTACACTGGCT-TAATCTTGTAGCCGATGCATGTCCCAGACAT
64164002 GTCTTACACT
1 GTCTTACACT
64164012 AGCTCACACA
Statistics
Matches: 121, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
45 3 0.02
46 75 0.62
47 42 0.35
48 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (45 bp):
GTCTTACACTGGCTTAATCTTGTAGCCGATGCATGTCCCAGACAT
Found at i:64167136 original size:29 final size:29
Alignment explanation
Indices: 64167083--64167238 Score: 185
Period size: 29 Copynumber: 5.4 Consensus size: 29
64167073 ATTGCCCACT
*
64167083 AGGCCCAATCTCA--TTTATATGGCCCATC
1 AGGCCCAAT-TCACGTTCATATGGCCCATC
*
64167111 CGGCCCAATTCACGTTCATATGGCCCATC
1 AGGCCCAATTCACGTTCATATGGCCCATC
*
64167140 AGACCCAATTCACGTTCATATGGCCCATC
1 AGGCCCAATTCACGTTCATATGGCCCATC
* * *
64167169 AGGCCCAATTCACATTCATATGACCCATT
1 AGGCCCAATTCACGTTCATATGGCCCATC
*
64167198 AGGCCCAATCTCA--TTTATATGGCCCATC
1 AGGCCCAAT-TCACGTTCATATGGCCCATC
* *
64167226 TGGCCCAAATCAC
1 AGGCCCAATTCAC
64167239 ATTATATTCA
Statistics
Matches: 111, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
27 6 0.05
28 27 0.24
29 75 0.68
30 3 0.03
ACGTcount: A:0.26, C:0.34, G:0.14, T:0.26
Consensus pattern (29 bp):
AGGCCCAATTCACGTTCATATGGCCCATC
Found at i:64167167 original size:58 final size:57
Alignment explanation
Indices: 64167086--64167245 Score: 207
Period size: 58 Copynumber: 2.8 Consensus size: 57
64167076 GCCCACTAGG
* * * *
64167086 CCCAATCTCATTTATATGGCCCATCCGGCCCAATTCACGTTCATATGGCCCATCAGA
1 CCCAATCTCATTCATATGGCCCATCAGGCCCAATTCACATTCATATGACCCATCAGA
* *
64167143 CCCAAT-TCACGTTCATATGGCCCATCAGGCCCAATTCACATTCATATGACCCATTAGG
1 CCCAATCTCA--TTCATATGGCCCATCAGGCCCAATTCACATTCATATGACCCATCAGA
* * *
64167201 CCCAATCTCATTTATATGGCCCATCTGGCCCAAATCACATT-ATAT
1 CCCAATCTCATTCATATGGCCCATCAGGCCCAATTCACATTCATAT
64167246 TCATGCCTAC
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
56 7 0.08
57 34 0.37
58 47 0.52
59 3 0.03
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.28
Consensus pattern (57 bp):
CCCAATCTCATTCATATGGCCCATCAGGCCCAATTCACATTCATATGACCCATCAGA
Found at i:64168152 original size:17 final size:19
Alignment explanation
Indices: 64168130--64168172 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
64168120 ATGGAAATAT
64168130 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
64168147 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
64168166 AATCTTA
1 AATCTTA
64168173 GAAGATATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.26
18 1 0.04
19 16 0.70
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:64168183 original size:22 final size:19
Alignment explanation
Indices: 64168138--64168174 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
64168128 ATAATCTTCA
64168138 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
64168157 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
64168175 AGATATGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:64168200 original size:22 final size:22
Alignment explanation
Indices: 64168138--64168183 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 22
64168128 ATAATCTTCA
64168138 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
64168157 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
64168179 ATGAT
1 ATGAT
64168184 TTTGTAATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.62
22 9 0.38
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Done.