Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 199 of 325
Found at i:64526017 original size:79 final size:80
Alignment explanation
Indices: 64525855--64526032 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
64525845 AGATACAAGT
* * * *
64525855 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
64525920 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
64525935 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
64525999 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
64526014 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
64526033 TATGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:64533809 original size:40 final size:40
Alignment explanation
Indices: 64533674--64533897 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
64533664 TTGAATGCTG
* * *
64533674 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
* *
64533714 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
64533753 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * * *
64533793 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
64533833 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
64533872 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64533898 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 21, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 65 0.41
40 81 0.52
41 10 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:64533810 original size:79 final size:79
Alignment explanation
Indices: 64533727--64533897 Score: 227
Period size: 79 Copynumber: 2.2 Consensus size: 79
64533717 GGACTAAGAT
* *
64533727 CCGAAGGCATTTGTGCGAGATA-CAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTA
* *
64533791 AATCCGGGTTAAGTC
65 AAACCGGGCTAAGTC
* * * * * *
64533806 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
64533871 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
64533885 CCGAAGGCATTTG
1 CCGAAGGCATTTG
64533898 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 58 0.73
80 21 0.27
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:64533915 original size:79 final size:80
Alignment explanation
Indices: 64533753--64533930 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
64533743 GAGATACAAT
* * * *
64533753 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
64533818 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
64533833 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
64533897 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
64533912 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
64533931 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:64542969 original size:46 final size:46
Alignment explanation
Indices: 64542919--64543091 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
64542909 TGGTTGAGCA
*
64542919 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
64542965 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
64543012 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
64543058 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
64543092 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:64543075 original size:93 final size:93
Alignment explanation
Indices: 64542916--64543086 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
64542906 GGATGGTTGA
* *
64542916 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
64542981 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
64543009 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
64543074 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
64543087 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64550526 original size:46 final size:46
Alignment explanation
Indices: 64550476--64550648 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
64550466 TGGTTGAGCA
*
64550476 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
64550522 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
64550569 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
64550615 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
64550649 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:64550632 original size:93 final size:93
Alignment explanation
Indices: 64550473--64550643 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
64550463 GGATGGTTGA
* *
64550473 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
64550538 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
64550566 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
64550631 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
64550644 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:64550909 original size:19 final size:20
Alignment explanation
Indices: 64550872--64550909 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64550862 ATAAGGTGGT
64550872 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
64550892 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
64550910 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:64557143 original size:26 final size:26
Alignment explanation
Indices: 64557108--64557158 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
64557098 AATGTGAAAG
*
64557108 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
64557134 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
64557159 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:64557292 original size:104 final size:103
Alignment explanation
Indices: 64557030--64557295 Score: 460
Period size: 103 Copynumber: 2.6 Consensus size: 103
64557020 TTGTATATAA
** * *
64557030 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
64557095 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
64557133 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
64557198 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
*
64557237 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCA
64557296 ATAACGGTTA
Statistics
Matches: 153, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
103 92 0.60
104 61 0.40
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:64559332 original size:22 final size:22
Alignment explanation
Indices: 64559307--64559348 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
64559297 AAATTAGAAT
* *
64559307 ATAAAAATTAAACTAAAAATAA
1 ATAAAAATAAAAATAAAAATAA
64559329 ATAAAAATAAAAATAAAAAT
1 ATAAAAATAAAAATAAAAAT
64559349 GGCTAAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (22 bp):
ATAAAAATAAAAATAAAAATAA
Found at i:64559367 original size:6 final size:6
Alignment explanation
Indices: 64559307--64559348 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
64559297 AAATTAGAAT
* *
64559307 ATAAAA ATTAAA CTAAAA AT--AA ATAAAA ATAAAA ATAAAA AT
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA AT
64559349 GGCTAAATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
4 4 0.13
6 26 0.87
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (6 bp):
ATAAAA
Found at i:64561863 original size:19 final size:20
Alignment explanation
Indices: 64561839--64561876 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64561829 GGTACCACCA
64561839 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
64561858 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
64561877 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:64562172 original size:46 final size:45
Alignment explanation
Indices: 64562105--64562272 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 45
64562095 TGCCCCTAAG
*
64562105 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCATCCATAAA
* * * * **
64562151 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATTTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGCATCCA-TAAA
* ** *
64562198 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGCATCCATAAA
64562244 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
64562273 ATGCTCAACC
Statistics
Matches: 98, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 61 0.62
47 34 0.35
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGCATCCATAAA
Found at i:64562265 original size:93 final size:93
Alignment explanation
Indices: 64562106--64562276 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
64562096 GCCCCTAAGT
** *
64562106 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
64562171 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
64562199 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
64562264 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64562277 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:64564266 original size:25 final size:25
Alignment explanation
Indices: 64564238--64564285 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
64564228 CAAGTTATTG
64564238 TACAAT-TTTAAAAAAAGTATATTTA
1 TACAATGTTT-AAAAAAGTATATTTA
64564263 TACAATGTTTAAAAAAGTATATT
1 TACAATGTTTAAAAAAGTATATT
64564286 ATAATGACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (25 bp):
TACAATGTTTAAAAAAGTATATTTA
Found at i:64564287 original size:24 final size:24
Alignment explanation
Indices: 64564229--64564288 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 24
64564219 AATCATAATC
*
64564229 AAGT-TATTGTACAATTTTAAAAA
1 AAGTATATTATACAATTTTAAAAA
64564252 AAGTATATTTATACAATGTTT-AAAA
1 AAGTATA-TTATACAAT-TTTAAAAA
64564277 AAGTATATTATA
1 AAGTATATTATA
64564289 ATGACCTCTG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
23 4 0.12
24 7 0.21
25 19 0.58
26 3 0.09
ACGTcount: A:0.48, C:0.03, G:0.08, T:0.40
Consensus pattern (24 bp):
AAGTATATTATACAATTTTAAAAA
Found at i:64564316 original size:12 final size:12
Alignment explanation
Indices: 64564299--64564324 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64564289 ATGACCTCTG
64564299 ATATAATTAATT
1 ATATAATTAATT
64564311 ATATAATTAATT
1 ATATAATTAATT
64564323 AT
1 AT
64564325 TTTGAAGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
ATATAATTAATT
Found at i:64564638 original size:28 final size:28
Alignment explanation
Indices: 64564598--64564658 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
64564588 TCATAATTTT
*
64564598 ATCTCATCATCAATTAAGATGATCTTTC
1 ATCTAATCATCAATTAAGATGATCTTTC
64564626 ATCTAATCATCAATTAAGATGATCTTTC
1 ATCTAATCATCAATTAAGATGATCTTTC
64564654 ATCTA
1 ATCTA
64564659 TCTTTGATGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (28 bp):
ATCTAATCATCAATTAAGATGATCTTTC
Found at i:64578069 original size:48 final size:48
Alignment explanation
Indices: 64577950--64578184 Score: 258
Period size: 48 Copynumber: 4.9 Consensus size: 48
64577940 GGTAAGATGT
* * * *
64577950 CGATGCCATGTCCCAGACATGGTCTTACACAAGCTCTCATAT-ATTGATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCA---ATGC
* ** * *
64578000 TGATGCCATGTTCCAAACATGGTCTTACTTTAGCTCACATATCGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAATGC
* * * *
64578048 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA-CAAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATC-AATGC
* * *
64578096 CGATGCCATGTTCCAAACATGGTCTTATACTAGCTCTCATATAAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAATGC
* *
64578144 CGGTGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA
64578185 CCCCTAGTAT
Statistics
Matches: 157, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
47 1 0.01
48 121 0.77
50 35 0.22
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAATGC
Found at i:64578151 original size:96 final size:97
Alignment explanation
Indices: 64577950--64578185 Score: 305
Period size: 96 Copynumber: 2.4 Consensus size: 97
64577940 GGTAAGATGT
* * * *
64577950 CGATGCCATGTCCCAGACATGGTCTTACACAAGCTCTCATATATTGATGCTGATGCCATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATACA-TAATGCCGATGCCATGTTCCA
* **
64578015 AACATGGTCTTACTTTAGCTCACATATCGAGGC
65 AACATGGTCTTACTCTAGCTCACATATAAAGGC
*
64578048 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATACA-AATGCCGATGCCATGTTCCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATACATAATGCCGATGCCATGTTCCAA
* *
64578112 ACATGGTCTTA-TACTAGCTCTCATATAAATGC
66 ACATGGTCTTACT-CTAGCTCACATATAAAGGC
* * * * *
64578144 CGGTGCCATGTTCCAAACATGGTCTTACACTGGCTCACATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAC
64578186 CCCTAGTATC
Statistics
Matches: 121, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
95 1 0.01
96 80 0.66
98 40 0.33
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (97 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATACATAATGCCGATGCCATGTTCCAA
ACATGGTCTTACTCTAGCTCACATATAAAGGC
Found at i:64586341 original size:26 final size:26
Alignment explanation
Indices: 64586312--64586367 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
64586302 ATTATGAATG
64586312 TTTGATTAATAAATAAATGATGAGTA
1 TTTGATTAATAAATAAATGATGAGTA
*
64586338 TTTGATTAATAAATAAATGGTGAGTA
1 TTTGATTAATAAATAAATGATGAGTA
64586364 TTTG
1 TTTG
64586368 GCACTCAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (26 bp):
TTTGATTAATAAATAAATGATGAGTA
Found at i:64586761 original size:15 final size:15
Alignment explanation
Indices: 64586731--64586759 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
64586721 ACTATTAGTA
64586731 ATTTTTTAAATATTT
1 ATTTTTTAAATATTT
64586746 ATTTTTT-AATATTT
1 ATTTTTTAAATATTT
64586760 TACCATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
ATTTTTTAAATATTT
Found at i:64588239 original size:11 final size:11
Alignment explanation
Indices: 64588225--64588263 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
64588215 TCATAAAAAA
64588225 ATAAAGAAATT
1 ATAAAGAAATT
64588236 ATAAA-AAATAT
1 ATAAAGAAAT-T
*
64588247 ATAAAAAAATT
1 ATAAAGAAATT
64588258 ATAAAG
1 ATAAAG
64588264 TACAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
10 4 0.16
11 17 0.68
12 4 0.16
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (11 bp):
ATAAAGAAATT
Found at i:64588288 original size:17 final size:16
Alignment explanation
Indices: 64588251--64588297 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
64588241 AAATATATAA
*
64588251 AAAAATTATAAAGTAC
1 AAAAATTATAAAATAC
*
64588267 AAAAATTATAAAATAT
1 AAAAATTATAAAATAC
*
64588283 AGAAAATTGTAAAAT
1 A-AAAATTATAAAAT
64588298 TTATTAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 15 0.56
17 12 0.44
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (16 bp):
AAAAATTATAAAATAC
Found at i:64588336 original size:35 final size:37
Alignment explanation
Indices: 64588292--64588369 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 37
64588282 TAGAAAATTG
* *
64588292 TAAAATTTATT-AAAATTGA-AAAAAAATATA-AAATA
1 TAAATTTTATTAAAAATT-ACAAAAAAATAAATAAATA
*
64588327 TAAATTTTATTAAAAATTACAAAAATATAAATAAATA
1 TAAATTTTATTAAAAATTACAAAAAAATAAATAAATA
64588364 TAAATT
1 TAAATT
64588370 ATAAAAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 11 0.30
36 15 0.41
37 11 0.30
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (37 bp):
TAAATTTTATTAAAAATTACAAAAAAATAAATAAATA
Found at i:64588378 original size:16 final size:17
Alignment explanation
Indices: 64588352--64588383 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
64588342 ATTACAAAAA
64588352 TATAAATAAATATAAAT
1 TATAAATAAATATAAAT
64588369 TATAAA-AAATATAAA
1 TATAAATAAATATAAA
64588384 AAAATTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
TATAAATAAATATAAAT
Found at i:64588383 original size:9 final size:9
Alignment explanation
Indices: 64588211--64588413 Score: 73
Period size: 10 Copynumber: 22.2 Consensus size: 9
64588201 ATTTTAAAGT
64588211 AAAATCATAA
1 AAAAT-ATAA
64588221 AAAA-ATAA
1 AAAATATAA
64588229 AGAAATTATAA
1 A-AAA-TATAA
64588240 AAAATATATA
1 AAAATATA-A
* *
64588250 AAAAAATTAT
1 AAAATA-TAA
* *
64588260 AAAGTA-CA
1 AAAATATAA
*
64588268 AAAAT-TAT
1 AAAATATAA
*
64588276 AAAATATAG
1 AAAATATAA
**
64588285 AAAAT-TGT
1 AAAATATAA
* *
64588293 AAAATTTATT
1 AAAATATA-A
64588303 AAAAT-TGAA
1 AAAATAT-AA
* *
64588312 AAAAAATAT
1 AAAATATAA
64588321 AAAATATAA
1 AAAATATAA
*** *
64588330 ATTTTATTA
1 AAAATATAA
64588339 AAAAT-TACA
1 AAAATATA-A
64588348 AAAATATAA
1 AAAATATAA
64588357 ATAAATAT--
1 A-AAATATAA
*
64588365 AAATTATAA
1 AAAATATAA
64588374 AAAATATAAA
1 AAAATAT-AA
*
64588384 AAAATTGTAA
1 AAAA-TATAA
64588394 AAAAGTATAA
1 AAAA-TATAA
64588404 AAAAT-TAA
1 AAAATATAA
64588412 AA
1 AA
64588414 TTATTAAAAA
Statistics
Matches: 144, Mismatches: 31, Indels: 38
0.68 0.15 0.18
Matches are distributed among these distances:
7 5 0.03
8 27 0.19
9 50 0.35
10 53 0.37
11 9 0.06
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (9 bp):
AAAATATAA
Found at i:64588395 original size:10 final size:10
Alignment explanation
Indices: 64588365--64588513 Score: 75
Period size: 10 Copynumber: 15.3 Consensus size: 10
64588355 AAATAAATAT
64588365 AAATTATAAA
1 AAATTATAAA
64588375 AAA-TATAAAA
1 AAATTAT-AAA
*
64588385 AAATTGTAAA
1 AAATTATAAA
*
64588395 AAAGTATAAA
1 AAATTATAAA
64588405 AAA-T-T--A
1 AAATTATAAA
*
64588411 AAATTATTAA
1 AAATTATAAA
*
64588421 AAATTTTAATA
1 AAATTATAA-A
64588432 AAATTA-ACAA
1 AAATTATA-AA
64588442 AATATTATAAA
1 AA-ATTATAAA
* *
64588453 AAA-AACATAA
1 AAATTATA-AA
**
64588463 AAAGCAT-AA
1 AAATTATAAA
*
64588472 AAATTAAAAA
1 AAATTATAAA
64588482 AAATTA-AAA
1 AAATTATAAA
*
64588491 ATATT-TGAAA
1 AAATTAT-AAA
*
64588501 AAGTTATAAA
1 AAATTATAAA
64588511 AAA
1 AAA
64588514 ACTATTTTTT
Statistics
Matches: 106, Mismatches: 17, Indels: 32
0.68 0.11 0.21
Matches are distributed among these distances:
6 4 0.04
7 1 0.01
8 2 0.02
9 19 0.18
10 60 0.57
11 19 0.18
12 1 0.01
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (10 bp):
AAATTATAAA
Found at i:64588404 original size:37 final size:35
Alignment explanation
Indices: 64588303--64588388 Score: 95
Period size: 36 Copynumber: 2.4 Consensus size: 35
64588293 AAAATTTATT
* *
64588303 AAAATTGAAAAAAA-ATATA-AAATATAAATTTTATTA
1 AAAATT-AAAAAAATATAAATAAATATAAA--TTATAA
*
64588339 AAAATTACAAAAATATAAATAAATATAAATTATAA
1 AAAATTAAAAAAATATAAATAAATATAAATTATAA
64588374 AAAATATAAAAAAAT
1 AAAAT-TAAAAAAAT
64588389 TGTAAAAAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
35 16 0.37
36 18 0.42
37 9 0.21
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.29
Consensus pattern (35 bp):
AAAATTAAAAAAATATAAATAAATATAAATTATAA
Found at i:64588454 original size:47 final size:46
Alignment explanation
Indices: 64588312--64588455 Score: 122
Period size: 46 Copynumber: 3.1 Consensus size: 46
64588302 TAAAATTGAA
* *
64588312 AAAAAATATAAA--ATATAAATTTTATTAAAAATT-ACAAAA-ATAT
1 AAAAAATATAAATTATAAAAATTTTAAT-AAAATTAACAAAATATAT
* * * *
64588355 AAATAAATATAAATTATAAAAAATATAAAAAAATTGTAA-AAAA-GTAT
1 AAA-AAATATAAATTATAAAAATTTTAATAAAA-T-TAACAAAATATAT
64588402 AAAAAAT-TAAAATTATTAAAAATTTTAATAAAATTAACAAAATATTAT
1 AAAAAATAT-AAATTA-TAAAAATTTTAATAAAATTAACAAAATA-TAT
64588450 AAAAAA
1 AAAAAA
64588456 AACATAAAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
43 3 0.04
44 9 0.11
45 8 0.10
46 25 0.31
47 25 0.31
48 10 0.12
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.31
Consensus pattern (46 bp):
AAAAAATATAAATTATAAAAATTTTAATAAAATTAACAAAATATAT
Found at i:64588784 original size:20 final size:21
Alignment explanation
Indices: 64588751--64588789 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
64588741 AATTATAGAC
*
64588751 ATTTTTTTATATTTTATATAT
1 ATTTTTGTATATTTTATATAT
64588772 ATTTTTGTA-ATTTTATAT
1 ATTTTTGTATATTTTATAT
64588790 TTTTTGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (21 bp):
ATTTTTGTATATTTTATATAT
Found at i:64588894 original size:20 final size:21
Alignment explanation
Indices: 64588847--64588896 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
64588837 TATTTGCACT
* *
64588847 TTTCTATATATATTTATAATA
1 TTTCTAAATAAATTTATAATA
*
64588868 TTT-TAAATAAATTTCTAA-A
1 TTTCTAAATAAATTTATAATA
64588887 TTTCTAAATA
1 TTTCTAAATA
64588897 TTTTCATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 4 0.16
20 18 0.72
21 3 0.12
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTCTAAATAAATTTATAATA
Found at i:64589010 original size:24 final size:22
Alignment explanation
Indices: 64588940--64589012 Score: 65
Period size: 24 Copynumber: 3.1 Consensus size: 22
64588930 CATTTTTAAA
* *
64588940 AATTTTTATTATTTTATTTTATT
1 AATTTATATTTTTTTATTTTA-T
* *
64588963 AATATATATTTTTTCATTTCTTAT
1 AATTTATATTTTTTTA-TT-TTAT
64588987 AATTTATATTTTTTTATCATTTAT
1 AATTTATATTTTTTTAT--TTTAT
64589011 AA
1 AA
64589013 GAATTTTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
23 13 0.32
24 23 0.57
25 4 0.10
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (22 bp):
AATTTATATTTTTTTATTTTAT
Found at i:64589017 original size:27 final size:26
Alignment explanation
Indices: 64588965--64589022 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
64588955 ATTTTATTAA
* * *
64588965 TATATATTTTTTCATTTCTTATAATT
1 TATATATTTTTTCATTTATAAGAATT
*
64588991 TATATTTTTTTATCATTTATAAGAATT
1 TATATATTTTT-TCATTTATAAGAATT
64589018 T-TATA
1 TATATA
64589023 ATTTCCTATA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.62
Consensus pattern (26 bp):
TATATATTTTTTCATTTATAAGAATT
Found at i:64589058 original size:38 final size:38
Alignment explanation
Indices: 64588991--64589064 Score: 98
Period size: 38 Copynumber: 1.9 Consensus size: 38
64588981 TCTTATAATT
*
64588991 TATATTTTTTTATCATTTATAAGAATTTTATAATTTCC
1 TATATTTTTTTATCATTTATAAAAATTTTATAATTTCC
*
64589029 TATATTTTTTTAT-TTTTA-AAAATATTTTTATAATTT
1 TATATTTTTTTATCATTTATAAAA-A-TTTTATAATTT
64589065 TTATGATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 3 0.09
37 5 0.16
38 24 0.75
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (38 bp):
TATATTTTTTTATCATTTATAAAAATTTTATAATTTCC
Found at i:64589100 original size:8 final size:9
Alignment explanation
Indices: 64588896--64589109 Score: 59
Period size: 9 Copynumber: 23.6 Consensus size: 9
64588886 ATTTCTAAAT
*
64588896 ATTTTCATA
1 ATTTTTATA
64588905 ATTTTT-T-
1 ATTTTTATA
64588912 ATTTTTCATA
1 ATTTTT-ATA
* * *
64588922 GTTTATATC
1 ATTTTTATA
*
64588931 ATTTTTAAAA
1 ATTTTT-ATA
*
64588941 ATTTTTATT
1 ATTTTTATA
* *
64588950 ATTTTATTTT
1 ATTTT-TATA
**
64588960 ATTAATATA
1 ATTTTTATA
*
64588969 TATTTTT-TC
1 -ATTTTTATA
64588978 ATTTCTTATA
1 ATTT-TTATA
*
64588988 ATTTATAT-
1 ATTTTTATA
* *
64588996 TTTTTTATC
1 ATTTTTATA
*
64589005 ATTTATA-A
1 ATTTTTATA
*
64589013 GAATTTTATA
1 -ATTTTTATA
*
64589023 ATTTCCTAT-
1 ATTT-TTATA
*
64589032 ATTTTT-TT
1 ATTTTTATA
*
64589040 ATTTTTAAAAA
1 ATTTTT--ATA
64589051 TATTTTTATA
1 -ATTTTTATA
*
64589061 ATTTTTATG
1 ATTTTTATA
*
64589070 ATATTCTATA
1 AT-TTTTATA
* *
64589080 AATTTTATG
1 ATTTTTATA
64589089 ATTTTTAT-
1 ATTTTTATA
64589097 ATTTTTAT-
1 ATTTTTATA
64589105 ATTTT
1 ATTTT
64589110 AATTAAAATT
Statistics
Matches: 147, Mismatches: 40, Indels: 37
0.66 0.18 0.17
Matches are distributed among these distances:
7 7 0.05
8 31 0.21
9 65 0.44
10 38 0.26
12 6 0.04
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (9 bp):
ATTTTTATA
Found at i:64590616 original size:50 final size:50
Alignment explanation
Indices: 64590557--64590701 Score: 161
Period size: 50 Copynumber: 2.9 Consensus size: 50
64590547 TATGGCGTTG
*
64590557 ATATGAGATCTCATGTAAGACCATGTCTGGGACATGGCATTGACATCGAC
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCGAC
* * *
64590607 ATATGAGATCCCATGTAAGATCATGTTTGGGACATGGCATTGGCATC-A-
1 ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCGAC
* * * * * * *
64590655 AGT-GGTGATCCCATATAAGACCATATCTGGGATATGGCGTTGGCATC
1 A-TATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATC
64590702 ATATTATGTG
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
48 37 0.45
49 2 0.02
50 43 0.52
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
ATATGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGACATCGAC
Found at i:64590686 original size:48 final size:48
Alignment explanation
Indices: 64590469--64590702 Score: 194
Period size: 48 Copynumber: 5.0 Consensus size: 48
64590459 ATTTGGGTTG
* * * **
64590469 ATGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGGT
1 ATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCAAT
* * ** *
64590517 ATGTGTTATCATGTAAGACCATATCTGGGATATGGCGTT-G-----AT
1 ATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCAAT
* * * *
64590559 ATGAGATCTCATGTAAGACCATGTCTGGGACATGGCATTGACATCGACAT
1 ATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC-A-AT
* * * *
64590609 ATGAGATCCCATGTAAGATCATGTTTGGGACATGGCATTGGCATCAAGT
1 ATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCAA-T
* * * *
64590658 -GGTGATCCCATATAAGACCATATCTGGGATATGGCGTTGGCATCA
1 ATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCA
64590703 TATTATGTGA
Statistics
Matches: 149, Mismatches: 28, Indels: 18
0.76 0.14 0.09
Matches are distributed among these distances:
42 34 0.23
47 1 0.01
48 69 0.46
49 2 0.01
50 43 0.29
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (48 bp):
ATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCAAT
Found at i:64593544 original size:47 final size:47
Alignment explanation
Indices: 64593481--64593951 Score: 665
Period size: 47 Copynumber: 9.7 Consensus size: 47
64593471 ATGATAGTAT
64593481 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
64593528 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
64593575 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* ** * * *
64593622 TGTATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTA-A--TG-----GCC-GAT-G-TGATG-A----ATGTGAAAGTGTATATATGTGATAA
*
64593685 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
64593732 -GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
64593778 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
64593825 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
64593872 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
64593919 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
64593952 CCCGAAGGGC
Statistics
Matches: 392, Mismatches: 14, Indels: 35
0.89 0.03 0.08
Matches are distributed among these distances:
46 45 0.11
47 288 0.73
48 5 0.01
50 2 0.01
52 4 0.01
53 1 0.00
54 2 0.01
55 6 0.02
56 2 0.01
57 1 0.00
58 4 0.01
60 2 0.01
62 1 0.00
63 29 0.07
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:64593616 original size:16 final size:16
Alignment explanation
Indices: 64593597--64593639 Score: 70
Period size: 16 Copynumber: 2.7 Consensus size: 16
64593587 GATGTGATGA
64593597 ATGTGA-AAGTGTATAT
1 ATGTGATAA-TGTATAT
64593613 ATGTGATAATGTATAT
1 ATGTGATAATGTATAT
64593629 ATGTGATAATG
1 ATGTGATAATG
64593640 CCTAATGGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 24 0.92
17 2 0.08
ACGTcount: A:0.37, C:0.00, G:0.23, T:0.40
Consensus pattern (16 bp):
ATGTGATAATGTATAT
Found at i:64593628 original size:63 final size:63
Alignment explanation
Indices: 64593550--64593686 Score: 258
Period size: 63 Copynumber: 2.2 Consensus size: 63
64593540 GATGTGATGA
64593550 ATGTGA-AAGTGTATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAA-TGTATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
64593613 ATGTGATAATGTATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATAATGTATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
64593676 ATGTGATAATG
1 ATGTGATAATG
64593687 CCTAATGGCC
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
63 71 0.97
64 2 0.03
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (63 bp):
ATGTGATAATGTATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:64593675 original size:157 final size:156
Alignment explanation
Indices: 64593482--64593777 Score: 565
Period size: 157 Copynumber: 1.9 Consensus size: 156
64593472 TGATAGTATG
64593482 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
64593547 TGAATGTGAAAGTGTATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
66 TGAATGTGAAAGTGTATATATGTGATAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
64593612 TATGTGATAATGTATATATGTGATAAT
130 TATGTGATAATGTATATATGTGATAAT
*
64593639 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAATGCCTAATGGCCGATGTGA
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
*
64593704 TGAATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGT
66 TGAATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
64593769 ATGTGATAA
131 ATGTGATAA
64593778 GGCCTAATGG
Statistics
Matches: 137, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
156 45 0.33
157 92 0.67
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (156 bp):
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
TGAATGTGAAAGTGTATATATGTGATAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAATGTATATATGTGATAAT
Found at i:64593679 original size:25 final size:25
Alignment explanation
Indices: 64593651--64593729 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
64593641 CTAATGGCCG
64593651 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
*** ****
64593676 ATGTGAT-AATGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
64593698 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
64593723 ATGTGAT
1 ATGTGAT
64593730 AAGCCTAATG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.34
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:64593686 original size:110 final size:111
Alignment explanation
Indices: 64593503--64593732 Score: 437
Period size: 110 Copynumber: 2.1 Consensus size: 111
64593493 GATGTGATGA
64593503 ATGTGA-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGATAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
64593567 TGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 TGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
64593613 ATGTGATAA-TGTATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 ATGTGATAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
64593677 TGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 TGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
64593723 ATGTGATAAG
1 ATGTGATAAG
64593733 CCTAATGGCC
Statistics
Matches: 117, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
110 115 0.98
111 2 0.02
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (111 bp):
ATGTGATAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAATGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:64593819 original size:25 final size:25
Alignment explanation
Indices: 64593791--64593869 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
64593781 CTAATGGCCG
64593791 ATGTGATGAATGTGAAAGTGTATGT
1 ATGTGATGAATGTGAAAGTGTATGT
* *** ***
64593816 ATGTGAT-AAGGCCTAA-TGGCCG-
1 ATGTGATGAATGTGAAAGTGTATGT
64593838 ATGTGATGAATGTGAAAGTGTATGT
1 ATGTGATGAATGTGAAAGTGTATGT
64593863 ATGTGAT
1 ATGTGAT
64593870 AGGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.30, C:0.05, G:0.32, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATGT
Found at i:64594125 original size:37 final size:37
Alignment explanation
Indices: 64594069--64594147 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
64594059 CCGAGCTCTA
* * *
64594069 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
64594106 AAGACCTGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
64594143 AAGAC
1 AAGAC
64594148 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:64595583 original size:44 final size:43
Alignment explanation
Indices: 64595513--64595597 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 43
64595503 GTTACACCAC
* *
64595513 ATCTGGGACGTTGGCATTGAATTGTGATTTACGTGTAAGACCCT
1 ATCTGGGACGTTGGCATCGAATTGTGA-TTACATGTAAGACCCT
64595557 ATCTGGGACAG-TGGCATCG-ATATGTGATTACATGTAAGACC
1 ATCTGGGAC-GTTGGCATCGAAT-TGTGATTACATGTAAGACC
64595598 ACGTCTGGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
43 15 0.41
44 21 0.57
45 1 0.03
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (43 bp):
ATCTGGGACGTTGGCATCGAATTGTGATTACATGTAAGACCCT
Found at i:64595607 original size:43 final size:44
Alignment explanation
Indices: 64595508--64595613 Score: 121
Period size: 43 Copynumber: 2.4 Consensus size: 44
64595498 GGGGTGTTAC
* *
64595508 ACCACATCTGGGACGTTGGCATTGAATTGTGATTTACGTGTAAG
1 ACCACATCTGGGACGTTGGCATCGAATTGTGATTTACATGTAAG
64595552 ACC-CTATCTGGGACAG-TGGCATCG-ATATGTGA-TTACATGTAAG
1 ACCAC-ATCTGGGAC-GTTGGCATCGAAT-TGTGATTTACATGTAAG
* *
64595595 ACCACGTCTGGGATGTTGG
1 ACCACATCTGGGACGTTGG
64595614 TGTTGTACGA
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
42 1 0.02
43 26 0.49
44 25 0.47
45 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (44 bp):
ACCACATCTGGGACGTTGGCATCGAATTGTGATTTACATGTAAG
Found at i:64598044 original size:32 final size:30
Alignment explanation
Indices: 64597970--64598051 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 30
64597960 GTATACAATT
* *
64597970 GTAACATAAATATTTAATTACTTTTTATTTAA
1 GTAA-ATAGATATTT-ATTACTTATTATTTAA
64598002 GTAAATAGATATTTATTACTTATTATTATTAA
1 GTAAATAGATATTTATTACTTATTA-T-TTAA
64598034 GTTAAA-AGATATTTATTA
1 G-TAAATAGATATTTATTA
64598052 ATTAAATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
30 10 0.22
31 10 0.22
32 21 0.47
33 4 0.09
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (30 bp):
GTAAATAGATATTTATTACTTATTATTTAA
Found at i:64599508 original size:21 final size:21
Alignment explanation
Indices: 64599484--64599536 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
64599474 TAGACAGCTC
64599484 GTGTGTCGTATCAAGCACCTT
1 GTGTGTCGTATCAAGCACCTT
* * *
64599505 GTGTGTCGTTTCAGGCACTTT
1 GTGTGTCGTATCAAGCACCTT
*
64599526 ATGTGTCGTAT
1 GTGTGTCGTAT
64599537 ACTACTTCTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.15, C:0.19, G:0.26, T:0.40
Consensus pattern (21 bp):
GTGTGTCGTATCAAGCACCTT
Found at i:64612094 original size:11 final size:11
Alignment explanation
Indices: 64612078--64612114 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
64612068 TTTAAAACTA
64612078 ATTTTTATTTT
1 ATTTTTATTTT
*
64612089 ATTTTTCTTTT
1 ATTTTTATTTT
*
64612100 ATTTTAATTTT
1 ATTTTTATTTT
64612111 ATTT
1 ATTT
64612115 CATCCTTAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:64622401 original size:27 final size:27
Alignment explanation
Indices: 64622370--64622547 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
64622360 TAAATTGTAC
64622370 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
64622397 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64622423 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
64622451 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
64622479 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64622506 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
64622533 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
64622548 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:64622484 original size:82 final size:81
Alignment explanation
Indices: 64622371--64622526 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
64622361 AAATTGTACA
* *
64622371 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
64622435 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
64622452 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
64622517 TGCGAGTTGA
65 TGCGAATTGA
64622527 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:64622538 original size:82 final size:81
Alignment explanation
Indices: 64622367--64622547 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
64622357 GATTAAATTG
* *
64622367 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
64622432 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
64622448 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
64622512 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
64622530 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
64622548 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:64630552 original size:27 final size:27
Alignment explanation
Indices: 64630521--64630690 Score: 170
Period size: 27 Copynumber: 6.4 Consensus size: 27
64630511 TAAATTGTAC
64630521 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* **
64630548 TGCACTAAGTGTGCGAAATGA--ATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64630572 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
64630600 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
64630628 AGCACTAA--GTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
64630653 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
64630680 AGCACTGAGTG
1 AGCACTAAGTG
64630691 CGGACTCAAT
Statistics
Matches: 120, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
25 39 0.32
26 6 0.05
27 60 0.50
28 15 0.12
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:64630685 original size:80 final size:78
Alignment explanation
Indices: 64630518--64630673 Score: 190
Period size: 80 Copynumber: 2.0 Consensus size: 78
64630508 GATTAAATTG
* *
64630518 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATGATGCACTAAGT
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAG-GTGCGAAATGAACGATGCACTAAGT
64630583 GTGCGAATTGACCA
65 GTGCGAATTGACCA
* * **
64630597 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAA-GTGCGATTTGATTACG-TAGCACTA
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGGTGCGAAATGA--ACGAT-GCACTA
*
64630660 AGTGTGCGAGTTGA
62 AGTGTGCGAATTGA
64630674 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
78 9 0.14
79 18 0.27
80 39 0.59
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (78 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGGTGCGAAATGAACGATGCACTAAGTG
TGCGAATTGACCA
Found at i:64642328 original size:28 final size:27
Alignment explanation
Indices: 64642235--64642375 Score: 180
Period size: 27 Copynumber: 5.2 Consensus size: 27
64642225 AGGAAGCGTC
* *
64642235 CTGGTGGATATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
64642262 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
*
64642289 CTGGTGGCTCTGCCACGATCATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
*
64642317 CTGGTGGCTCTGCCACGATCATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
*
64642345 CTGGTGACTCTGCCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATCTGTAT
64642371 CTGGT
1 CTGGT
64642376 AGCCATGCTG
Statistics
Matches: 105, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
26 8 0.08
27 51 0.49
28 46 0.44
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:64650160 original size:27 final size:27
Alignment explanation
Indices: 64650104--64650169 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
64650094 ACAAAGCGTC
*
64650104 CTGGTGGCTATGCCACAATTATATGAT
1 CTGGTGGCTCTGCCACAATTATATGAT
* * *
64650131 CTGGTGGCTCTGCCA-TATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATATGAT
64650158 CTGGTGGCTCTG
1 CTGGTGGCTCTG
64650170 GCACGATCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 2 0.06
27 32 0.94
ACGTcount: A:0.17, C:0.21, G:0.26, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATATGAT
Found at i:64651879 original size:47 final size:46
Alignment explanation
Indices: 64651785--64651902 Score: 119
Period size: 47 Copynumber: 2.5 Consensus size: 46
64651775 CATATCAACA
** *
64651785 CCATATCCCAGATATGGTCTTACATGAAATACATACCAATACAGATG
1 CCATATCCCAGATATGG-CTTACATGGCACACATACCAATACAGATG
* * * *
64651832 CCATATCCCAGATATGGCTTACACTGGCACACGTATCAATGCCGATG
1 CCATATCCCAGATATGGCTTACA-TGGCACACATACCAATACAGATG
* * * *
64651879 CTATGTCCCAGACATGTCTTACAT
1 CCATATCCCAGATATGGCTTACAT
64651903 TGGCTCTCAT
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
46 7 0.12
47 52 0.88
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (46 bp):
CCATATCCCAGATATGGCTTACATGGCACACATACCAATACAGATG
Found at i:64657843 original size:14 final size:14
Alignment explanation
Indices: 64657822--64657855 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
64657812 AAAATTAAAT
64657822 CACA-AAAATTTCA
1 CACATAAAATTTCA
64657835 CACATAAAATTTCA
1 CACATAAAATTTCA
64657849 CACATAA
1 CACATAA
64657856 TAAACACAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.53, C:0.24, G:0.00, T:0.24
Consensus pattern (14 bp):
CACATAAAATTTCA
Found at i:64661479 original size:39 final size:39
Alignment explanation
Indices: 64661321--64661471 Score: 257
Period size: 39 Copynumber: 3.9 Consensus size: 39
64661311 TTCAAGACAG
* *
64661321 TGGAAATGTATCCGCGCTAAAGTCCCGCAGGCTTCATGA
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATGC
* *
64661360 TGGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCATGT
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATGC
64661399 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATGC
*
64661438 TGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTT
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTT
64661472 TGTGCTGGTA
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 106 1.00
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATGC
Found at i:64663745 original size:28 final size:28
Alignment explanation
Indices: 64663713--64663813 Score: 121
Period size: 28 Copynumber: 3.6 Consensus size: 28
64663703 GTGAACATAG
64663713 GCACTGTGTGTGCGAGTTCTGTAACTGA
1 GCACTGTGTGTGCGAGTTCTGTAACTGA
* * ***
64663741 GCACTGTGTGTGCGAGATCAGTTGTTGA
1 GCACTGTGTGTGCGAGTTCTGTAACTGA
* **
64663769 GGCACTGTGTGTGTGAGTTCTGTAACCAA
1 -GCACTGTGTGTGCGAGTTCTGTAACTGA
64663798 GCACTGTGTGTGCGAG
1 GCACTGTGTGTGCGAG
64663814 ATCGATTGTT
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
28 38 0.66
29 20 0.34
ACGTcount: A:0.18, C:0.17, G:0.35, T:0.31
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCTGTAACTGA
Found at i:64663780 original size:57 final size:57
Alignment explanation
Indices: 64663711--64663840 Score: 190
Period size: 57 Copynumber: 2.2 Consensus size: 57
64663701 AAGTGAACAT
**
64663711 AGGCACTGTGTGTGCGAGTTCTGTAACTGAGCACTGTGTGTGCGAGATC-AGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCTGTAACCAAGCACTGTGTGTGCGAGATCGA-TTGTTG
*
64663768 AGGCACTGTGTGTGTGAGTTCTGTAACCAAGCACTGTGTGTGCGAGATCGATTGTTG
1 AGGCACTGTGTGTGCGAGTTCTGTAACCAAGCACTGTGTGTGCGAGATCGATTGTTG
*
64663825 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
64663841 AAATGAGATC
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
57 58 0.88
58 1 0.02
59 7 0.11
ACGTcount: A:0.18, C:0.15, G:0.35, T:0.31
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCTGTAACCAAGCACTGTGTGTGCGAGATCGATTGTTG
Found at i:64666904 original size:39 final size:39
Alignment explanation
Indices: 64666700--64666922 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
64666690 TTGAATGCTG
* * * * * *
64666700 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
64666740 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
64666780 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
*
64666820 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
64666860 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
64666899 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
64666923 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 22, Indels: 15
0.81 0.12 0.08
Matches are distributed among these distances:
39 38 0.25
40 106 0.69
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:64666942 original size:79 final size:80
Alignment explanation
Indices: 64666780--64666957 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
64666770 AGATACAAGT
* * * *
64666780 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
64666845 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
64666860 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
64666924 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
* *
64666939 TCC-GGTTAAATGCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
64666958 TATGTGATTT
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
78 15 0.18
79 48 0.59
80 19 0.23
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:64675784 original size:46 final size:46
Alignment explanation
Indices: 64675734--64675906 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
64675724 TGGTTGAGCA
*
64675734 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
64675780 TCCGAGCTTGTTGAGTTGAGTCCGAG-T---TTGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A--CG
* * *
64675827 TCCGAACTCGTTGAGTTGGGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* ** *
64675873 CCCGTGCTCGTTGAGTTGAGTCAGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
64675907 GGGGCGGGTT
Statistics
Matches: 99, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 2 0.02
46 53 0.54
47 23 0.23
48 2 0.02
50 5 0.05
51 4 0.04
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:64675890 original size:93 final size:93
Alignment explanation
Indices: 64675731--64675900 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
64675721 GGATGGTTGA
* * *
64675731 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
*
64675796 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCAGAGTTTGTGAGATGTAACTAG
* * * *
64675824 GCATCCGAACTCGTTGAGTTGGGTCCGAGTTCATTTATGGATGCGAACGCCCGTGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
64675889 TGAGTCAGAGTT
66 TGAGTCAGAGTT
64675901 CACTTAGGGG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
TGAGTCAGAGTTTGTGAGATGTAACTAG
Found at i:64692081 original size:5 final size:5
Alignment explanation
Indices: 64692071--64692099 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
64692061 GTATGATACT
64692071 ATGAC ATGAC ATGAC ATGAC ATGAC ATGA
1 ATGAC ATGAC ATGAC ATGAC ATGAC ATGA
64692100 TGCATATGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (5 bp):
ATGAC
Found at i:64694782 original size:39 final size:40
Alignment explanation
Indices: 64694689--64694911 Score: 242
Period size: 40 Copynumber: 5.6 Consensus size: 40
64694679 CGGATGATAA
* * *
64694689 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TGGCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGCT-ACTATA-T
64694729 CCGGGCTAAGTCCCGAAGGCATTCT-T-CGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATT-TGTGCGAGCTACTATAT
* *
64694768 CCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * * *
64694808 CCGGGCGAAGTCTCGAAGGCATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
* * * *
64694847 CCGGGCTAAGTCCCGAAGGAATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
*
64694887 CCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
64694912 AGCTAGTGGC
Statistics
Matches: 160, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 64 0.40
40 92 0.57
41 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
Found at i:64694825 original size:79 final size:79
Alignment explanation
Indices: 64694728--64694911 Score: 237
Period size: 79 Copynumber: 2.3 Consensus size: 79
64694718 AGTGGCTAAT
**
64694728 TCCGGGCTAAGTCCCGAAGGCATTCT-T-CGAGCTACTATATCCGGGCTAAGTCCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATT-TGTGCGAGCTACTATA-CCGGGCTAAGTCCCGAAGGAATT
* *
64694791 TGTGCGAGCTATTATA
64 TGTGCAAGCTACTATA
* * * *
64694807 TCCGGGCGAAGTCTCGAAGGCATTTGTGCGAGTTATTATACCGGGCTAAGTCCCGAAGGAATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATACCGGGCTAAGTCCCGAAGGAATTTG
*
64694872 TGCAAGTTACTATA
66 TGCAAGCTACTATA
* *
64694886 ACCAGGCTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
64694912 AGCTAGTGGC
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
78 1 0.01
79 79 0.88
80 10 0.11
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATACCGGGCTAAGTCCCGAAGGAATTTG
TGCAAGCTACTATA
Found at i:64694933 original size:79 final size:78
Alignment explanation
Indices: 64694732--64694934 Score: 216
Period size: 79 Copynumber: 2.6 Consensus size: 78
64694722 GCTAATTCCG
**
64694732 GGCTAAGTCCCGAAGGCATTCTTCGAGCTA--CTATATCCGGGCTAAGTCCCGAAGGCGTTTGTG
1 GGCTAAGTCCCGAAGGCA-T-TT-GAGCTAGTCTATATCCGGGCTAAGTCCCGAAGGAATTTGTG
* * * *
64694795 CGAGCTATTATATCCG
63 CAAGCTACTATAACCA
* * * *
64694811 GGCGAAGTCTCGAAGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGAATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGAGCTAGTCTA-TAT-CCGGGCTAAGTCCCGAAGGAATTTGTGC
*
64694875 AAGTTACTATAACCA
64 AAGCTACTATAACCA
64694890 GGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 GGCTAAGTCCCGAAGGCATTTGAGCTAGT--CTATATCCGGGCTAA
64694935 ACTCCGAAGG
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
76 4 0.04
77 4 0.04
78 4 0.04
79 83 0.81
80 2 0.02
81 3 0.03
82 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
GGCTAAGTCCCGAAGGCATTTGAGCTAGTCTATATCCGGGCTAAGTCCCGAAGGAATTTGTGCAA
GCTACTATAACCA
Found at i:64706573 original size:11 final size:11
Alignment explanation
Indices: 64706557--64706585 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
64706547 CAAAAAAATT
64706557 TATTTTTCTTA
1 TATTTTTCTTA
64706568 TATTTTTCTTA
1 TATTTTTCTTA
64706579 TATTTTT
1 TATTTTT
64706586 GTGGTCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (11 bp):
TATTTTTCTTA
Found at i:64714536 original size:50 final size:49
Alignment explanation
Indices: 64714384--64714607 Score: 199
Period size: 50 Copynumber: 4.6 Consensus size: 49
64714374 TCAGAGCTAG
*
64714384 TGTAAGACCATGTCTAGGACATGGCATCGGC-CTCAA--TATGCGAGCCAA
1 TGTAAGACCATGTCT-GGACATGGCATCGGCAC-CAATGTATGAGAGCCAA
** * * * * *
64714432 TGTAAGATGATGTTTGGAACATGGCAT---TAGCATTGTTATGTGAGCCAA
1 TGTAAGACCATGTCTGG-ACATGGCATCGGCACCAATG-TATGAGAGCCAA
* * *
64714480 AGTAAGATCATGTCTGGAACATGGCATCGTCACCAATGTATGAGAGCCAA
1 TGTAAGACCATGTCTGG-ACATGGCATCGGCACCAATGTATGAGAGCCAA
* * * *
64714530 TGTAAGAGCATGTCTGGGACATGGTATTGGCACCAATGTATGAGAGCCAG
1 TGTAAGACCATGTCT-GGACATGGCATCGGCACCAATGTATGAGAGCCAA
*
64714580 TGTAAAACCATGTCTGTGACATGGCATC
1 TGTAAGACCATGTCTG-GACATGGCATC
64714608 AGCATTTTAC
Statistics
Matches: 142, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
45 2 0.01
47 2 0.01
48 56 0.39
49 1 0.01
50 74 0.52
51 7 0.05
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGACATGGCATCGGCACCAATGTATGAGAGCCAA
Found at i:64720786 original size:48 final size:47
Alignment explanation
Indices: 64720722--64720986 Score: 217
Period size: 48 Copynumber: 5.4 Consensus size: 47
64720712 GGTTATGTGT
*
64720722 GAGCCAGTGTAAGACCATGCTTGGAGCATGGCATCGGCACTGTTATGA
1 GAGCCAGTGTAAGACCATGCTTGGA-CATGGCATCGGCACTATTATGA
* * * * * *
64720770 GAGCTAATGTAAGACCATGTCTGGGACATGGCATCGAC-CTCAATATGC
1 GAGCCAGTGTAAGACCATG-CTTGGACATGGCATCGGCACT-ATTATGA
* * * * * * *
64720818 GAGCCAATGTAAGACAATGTTTGGAACATAGCATCAGCATTATTATGT
1 GAGCCAGTGTAAGACCATGCTTGG-ACATGGCATCGGCACTATTATGA
* ** *
64720866 GAGCCAGTGTAAGACCATGTTTAGGACATAACATCGGCACCGATGTATGA
1 GAGCCAGTGTAAGACCATGCTT-GGACATGGCATCGGCA-CTAT-TATGA
* * * * * *
64720916 GAGCTAGTGTAAAACCATGTCTAGAACATGGCATTGGCACCAATATATGA
1 GAGCCAGTGTAAGACCATG-CTTGGACATGGCATCGGCA-CTAT-TATGA
64720966 GAGCCAGTGTAAGACCATGCT
1 GAGCCAGTGTAAGACCATGCT
64720987 CAAGACATGG
Statistics
Matches: 173, Mismatches: 36, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
47 5 0.03
48 96 0.55
49 12 0.07
50 59 0.34
51 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGCTTGGACATGGCATCGGCACTATTATGA
Found at i:64723154 original size:18 final size:18
Alignment explanation
Indices: 64723131--64723233 Score: 64
Period size: 18 Copynumber: 5.4 Consensus size: 18
64723121 CAGCTCTGAT
64723131 GAGCTTCAGTTAGCCTTC
1 GAGCTTCAGTTAGCCTTC
* *
64723149 GAGCTTCTGTTTAGCACTTGT
1 GAGCTTCAG-TTAGC-CTT-C
*
64723170 GTGCTAT-AGTTAGCCTTC
1 GAGCT-TCAGTTAGCCTTC
* * *
64723188 GGGCTTCCGTTTAGCACTTGT
1 GAGCTTCAG-TTAGC-CTT-C
*
64723209 GTGCTTCAGTTAGCCTTC
1 GAGCTTCAGTTAGCCTTC
*
64723227 GGGCTTC
1 GAGCTTC
64723234 TGTTTAGCAC
Statistics
Matches: 65, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
17 1 0.02
18 19 0.29
19 16 0.25
20 16 0.25
21 12 0.18
22 1 0.02
ACGTcount: A:0.13, C:0.24, G:0.25, T:0.38
Consensus pattern (18 bp):
GAGCTTCAGTTAGCCTTC
Found at i:64723194 original size:39 final size:39
Alignment explanation
Indices: 64723133--64723244 Score: 190
Period size: 39 Copynumber: 2.9 Consensus size: 39
64723123 GCTCTGATGA
*
64723133 GCTTCAGTTAGCCTTCGAGCTTCTGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTGTGT
*
64723172 GCTAT-AGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCT-TCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTGTGT
64723211 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACT
1 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACT
64723245 CTAGACTTCA
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 66 0.97
40 1 0.01
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTGTGT
Found at i:64725862 original size:26 final size:26
Alignment explanation
Indices: 64725826--64725905 Score: 72
Period size: 26 Copynumber: 3.0 Consensus size: 26
64725816 CAAGCACACC
*
64725826 AATAATACAGCAAAGCTACCAGTAAT
1 AATAATGCAGCAAAGCTACCAGTAAT
* * *
64725852 AATAATGCAGCATAGCTGCCAGAAACT
1 AATAATGCAGCAAAGCTACCAGTAA-T
** *
64725879 -ATAAATGTGGCAAAGCCACCAGTAAT
1 AAT-AATGCAGCAAAGCTACCAGTAAT
64725905 A
1 A
64725906 GTGAATGTGA
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
26 24 0.59
27 17 0.41
ACGTcount: A:0.45, C:0.20, G:0.16, T:0.19
Consensus pattern (26 bp):
AATAATGCAGCAAAGCTACCAGTAAT
Found at i:64726103 original size:27 final size:27
Alignment explanation
Indices: 64726070--64726241 Score: 209
Period size: 27 Copynumber: 6.4 Consensus size: 27
64726060 GGGCATAATC
*
64726070 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
64726097 GTTATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
64726124 GTCATTATACCCTACAAGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
64726151 GTCATTTTACTCTACAAGGGTATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
64726178 GTCAATTTACCCTAAAGGAGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
64726205 GTTATTTTACCCTACAGAGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
64726232 GTCATTTTAC
1 GTCATTTTAC
64726242 AAACCGGGGC
Statistics
Matches: 119, Mismatches: 26, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 119 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:64726268 original size:27 final size:26
Alignment explanation
Indices: 64726238--64726492 Score: 142
Period size: 27 Copynumber: 9.5 Consensus size: 26
64726228 TACGGTCATT
*
64726238 TTACAAACCGGGGCTATTTCACTAATC
1 TTACAAACCGGGG-TATTTCAGTAATC
* * *
64726265 TTACAAATCAGGGTATTTCAGTAATT
1 TTACAAACCGGGGTATTTCAGTAATC
* * *
64726291 TTACAAGCTAGGGGTATTTCTGTAATC
1 TTACAAAC-CGGGGTATTTCAGTAATC
* * *
64726318 TTACAAACTAGGGGTACTTT-GGTAATT
1 TTACAAAC-CGGGGTA-TTTCAGTAATC
** *
64726345 TTACAAATTGGGGGTATTTC-GTTAATT
1 TTACAAA-CCGGGGTATTTCAG-TAATC
** *
64726372 TTACAAATTGGGGGTATTTCGGTAAT-
1 TTACAAA-CCGGGGTATTTCAGTAATC
* *
64726398 TCTGCAAACCGAGGGTATTT-TGATAATC
1 T-TACAAACCG-GGGTATTTCAG-TAATC
*
64726426 TTACAAACCAGGGGTATTTCGGTAATC
1 TTACAAACC-GGGGTATTTCAGTAATC
** * * *
64726453 TTA-AAATTGAGAGTATTTCGGTAATT
1 TTACAAACCG-GGGTATTTCAGTAATC
*
64726479 TTACAAACCAGGGT
1 TTACAAACCGGGGT
64726493 CTTAACATCC
Statistics
Matches: 185, Mismatches: 29, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
25 1 0.01
26 47 0.25
27 130 0.70
28 7 0.04
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.36
Consensus pattern (26 bp):
TTACAAACCGGGGTATTTCAGTAATC
Found at i:64726359 original size:54 final size:54
Alignment explanation
Indices: 64726223--64726491 Score: 235
Period size: 54 Copynumber: 5.0 Consensus size: 54
64726213 ACCCTACAGA
* * * * **
64726223 GGTATTACGGTCATTTTACAAACCGGGGCTATTTCACTAATCTTACAAA-TCA-G
1 GGTATTTCGGTAATTTTACAAACTGGGGGTATTTCTGTAATCTTACAAACT-AGG
* * *
64726276 GGTATTTCAGTAATTTTACAAGCTAGGGGTATTTCTGTAATCTTACAAACTAGG
1 GGTATTTCGGTAATTTTACAAACTGGGGGTATTTCTGTAATCTTACAAACTAGG
* * * *
64726330 GGTACTTT-GGTAATTTTACAAATTGGGGGTATTTC-GTTAATTTTACAAATTGGG
1 GGTA-TTTCGGTAATTTTACAAACTGGGGGTATTTCTG-TAATCTTACAAACTAGG
* * * * *
64726384 GGTATTTCGGTAATTCTGCAAACCGAGGGTATTT-TGATAATCTTACAAACCAGG
1 GGTATTTCGGTAATTTTACAAACTGGGGGTATTTCTG-TAATCTTACAAACTAGG
* * * * * * *
64726438 GGTATTTCGGTAATCTTA-AAATTGAGAGTATTTCGGTAATTTTACAAACCAGG
1 GGTATTTCGGTAATTTTACAAACTGGGGGTATTTCTGTAATCTTACAAACTAGG
64726491 G
1 G
64726492 TCTTAACATC
Statistics
Matches: 175, Mismatches: 34, Indels: 14
0.78 0.15 0.06
Matches are distributed among these distances:
53 74 0.42
54 98 0.56
55 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTACAAACTGGGGGTATTTCTGTAATCTTACAAACTAGG
Found at i:64726386 original size:81 final size:78
Alignment explanation
Indices: 64726223--64726491 Score: 229
Period size: 81 Copynumber: 3.3 Consensus size: 78
64726213 ACCCTACAGA
* * * * *
64726223 GGTATTACGGTCATTTTACAAACCGGGGCTA-TTTCACTAATCTTACAAATCA-GGGTATTTCAG
1 GGTATTTCGGT-AATTTACAAACAGGGG-TACTTTGA-TAATCTTACAAACCAGGGGTATTTC-G
** *
64726286 TAATTTTACAAGCTAGG
62 TAATTTTACAAATTGGG
* * * ***
64726303 GGTATTTCTGTAATCTTACAAACTAGGGGTACTTTGGTAATTTTACAAATTGGGGGTATTTCGTT
1 GGTATTTCGGTAAT-TTACAAAC-AGGGGTACTTTGATAATCTTACAAACCAGGGGTATTTCG-T
64726368 AATTTTACAAATTGGG
63 AATTTTACAAATTGGG
* * *
64726384 GGTATTTCGGTAATTCTGCAAACCGAGGGTATTTTGATAATCTTACAAACCAGGGGTATTTCGGT
1 GGTATTTCGGTAATT-TACAAACAG-GGGTACTTTGATAATCTTACAAACCAGGGGTATTTC-GT
* *
64726449 AATCTTA-AAATTGAG
63 AATTTTACAAATTGGG
*
64726464 AGTATTTCGGTAATTTTACAAACCAGGG
1 GGTATTTCGGTAA-TTTACAAA-CAGGG
64726492 TCTTAACATC
Statistics
Matches: 153, Mismatches: 26, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
79 2 0.01
80 60 0.39
81 90 0.59
82 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (78 bp):
GGTATTTCGGTAATTTACAAACAGGGGTACTTTGATAATCTTACAAACCAGGGGTATTTCGTAAT
TTTACAAATTGGG
Found at i:64727683 original size:12 final size:13
Alignment explanation
Indices: 64727665--64727694 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
64727655 AATCGGTCCT
64727665 TAGAAAAAGAAAA
1 TAGAAAAAGAAAA
64727678 -AGAAAAAGAAAA
1 TAGAAAAAGAAAA
64727690 TAGAA
1 TAGAA
64727695 TACTTGAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.07
Consensus pattern (13 bp):
TAGAAAAAGAAAA
Found at i:64730157 original size:28 final size:28
Alignment explanation
Indices: 64730117--64730225 Score: 116
Period size: 28 Copynumber: 3.9 Consensus size: 28
64730107 CATGACTGTA
64730117 AATGTGATTTGGGCCTAGT-GGCCATATG
1 AATGTGA-TTGGGCCTAGTGGGCCATATG
* * *
64730145 AATGTGATTTGGGCCTAATGGGCCACATA
1 AATGTGA-TTGGGCCTAGTGGGCCATATG
*
64730174 AATGTGAATGGG-CT-GATGGGCCATATG
1 AATGTGATTGGGCCTAG-TGGGCCATATG
* *
64730201 AAAGAGATTGGGCCTAGTGGGCCAT
1 AATGTGATTGGGCCTAGTGGGCCAT
64730226 TTATAGGTAT
Statistics
Matches: 67, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
27 20 0.30
28 32 0.48
29 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.27
Consensus pattern (28 bp):
AATGTGATTGGGCCTAGTGGGCCATATG
Found at i:64730212 original size:27 final size:27
Alignment explanation
Indices: 64730136--64730225 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
64730126 TGGGCCTAGT
*
64730136 GGCCATATGAATGTGATTTGGGCCTAATG
1 GGCCATATGAAAGTGA-TTGGG-CTAATG
* * *
64730165 GGCCACAT-AAATGTGAATGGGCTGATG
1 GGCCATATGAAA-GTGATTGGGCTAATG
* *
64730192 GGCCATATGAAAGAGATTGGGCCTAGTG
1 GGCCATATGAAAGTGATTGGG-CTAATG
64730220 GGCCAT
1 GGCCAT
64730226 TTATAGGTAT
Statistics
Matches: 49, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
27 19 0.39
28 19 0.39
29 11 0.22
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (27 bp):
GGCCATATGAAAGTGATTGGGCTAATG
Found at i:64737562 original size:39 final size:39
Alignment explanation
Indices: 64737473--64737688 Score: 308
Period size: 39 Copynumber: 5.5 Consensus size: 39
64737463 ATAAAGCATG
* *
64737473 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
64737513 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
64737552 CGGGACTTAGCCCGGGTATAACACCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
64737591 TGGGACTTAGCTCGGTTATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
64737630 TGGGACTTAGCCCGGATATAACACTAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
64737669 CGGGAATTAGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
64737689 TATCTCACAC
Statistics
Matches: 161, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 21 0.13
39 134 0.83
40 6 0.04
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.21
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:64745732 original size:28 final size:28
Alignment explanation
Indices: 64745700--64745755 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
64745690 TCAGAGTATA
64745700 AGTGGGCCAAAGCCCAATACAGTAACAG
1 AGTGGGCCAAAGCCCAATACAGTAACAG
* * *
64745728 AGTGGGCCTAAGCCCATTGCAGTAACAG
1 AGTGGGCCAAAGCCCAATACAGTAACAG
64745756 TATCAGTAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.34, C:0.25, G:0.27, T:0.14
Consensus pattern (28 bp):
AGTGGGCCAAAGCCCAATACAGTAACAG
Found at i:64745974 original size:27 final size:27
Alignment explanation
Indices: 64745919--64745978 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
64745909 AGTATAGCTG
* *
64745919 CCAGAAATAGTAAATGTGGCAAAGCCA
1 CCAGTAATAGTAAATGTGACAAAGCCA
* * *
64745946 CCAGTAATAGTGAATGTGACATAGTCA
1 CCAGTAATAGTAAATGTGACAAAGCCA
64745973 CCAGTA
1 CCAGTA
64745979 CAATACTTCC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.20
Consensus pattern (27 bp):
CCAGTAATAGTAAATGTGACAAAGCCA
Found at i:64746143 original size:27 final size:27
Alignment explanation
Indices: 64746119--64746296 Score: 239
Period size: 27 Copynumber: 6.6 Consensus size: 27
64746109 GGGCATTATC
*
64746119 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
64746146 GTTATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
64746173 GTCATTATACCCTACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
64746200 GTTATTTTACCCTACAAGGGTATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
64746227 GTCATTTTACCCTAAAGGGTTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
64746254 GTCATTTTACACTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
64746281 GTCATTTTATCCTACA
1 GTCATTTTACCCTACA
64746297 AGATTATTAC
Statistics
Matches: 127, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:64746331 original size:54 final size:54
Alignment explanation
Indices: 64746161--64746315 Score: 134
Period size: 54 Copynumber: 2.9 Consensus size: 54
64746151 TTTACCCTAT
* * * ** ** * *
64746161 AGGGGCATTACGGTCATTATACCCTACAGGGGTATTAC-AGTTATTTTACCCTAC
1 AGGGGTATTACGGTCATTTTACCCTAAAGGATTATTACGA-CCATTTTACACAAC
* * * ** *
64746215 AAGGGTATTATGGTCATTTTACCCTAAAGGGTTATTACGGTCATTTTACACTAC
1 AGGGGTATTACGGTCATTTTACCCTAAAGGATTATTACGACCATTTTACACAAC
*
64746269 AGGGGTATTACGGTCATTTTATCCTACAA-GATTATTACGACCATTTT
1 AGGGGTATTACGGTCATTTTACCCTA-AAGGATTATTACGACCATTTT
64746316 GCAAACCGGG
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
54 82 0.98
55 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (54 bp):
AGGGGTATTACGGTCATTTTACCCTAAAGGATTATTACGACCATTTTACACAAC
Found at i:64746353 original size:27 final size:27
Alignment explanation
Indices: 64746323--64746779 Score: 304
Period size: 27 Copynumber: 17.0 Consensus size: 27
64746313 TTTGCAAACC
* * *
64746323 GGGGGTATTTCAACAATCTTATAAATA
1 GGGGGTATTTCGATAATCTTACAAATA
* * *
64746350 GGGGGTATTTCGGTAATTTTACAAATT
1 GGGGGTATTTCGATAATCTTACAAATA
* *
64746377 GGGGGTATTTTGATAATCTTACAAATC
1 GGGGGTATTTCGATAATCTTACAAATA
* * *
64746404 GGGGGTATTTCAATAATTTTACAAATC
1 GGGGGTATTTCGATAATCTTACAAATA
* * * *
64746431 GAGGTTATTTCGATAATTTTACAAACA
1 GGGGGTATTTCGATAATCTTACAAATA
* *
64746458 GGGGGTATGTCGATAATCTTAGAAACT-
1 GGGGGTATTTCGATAATCTTACAAA-TA
* * *
64746485 GGGGGTATTT-TAGTAATTTTACAAACCA
1 GGGGGTATTTCGA-TAATCTTACAAA-TA
** * *
64746513 -AAGGTATTTCGTTAATTTTACAAACTA
1 GGGGGTATTTCGATAATCTTACAAA-TA
* * * **
64746540 -AGGGTATTTCGATAATTTTATAAACC
1 GGGGGTATTTCGATAATCTTACAAATA
* * **
64746566 GGGGGTATTTCAAAAATCTTACAGACCA
1 GGGGGTATTTCGATAATCTTACA-AATA
* * **
64746594 -GGGGTATTTCAATAATGTTACAAACC
1 GGGGGTATTTCGATAATCTTACAAATA
* *
64746620 GGGGGTATTTCAATAATGTTACAAACT-
1 GGGGGTATTTCGATAATCTTACAAA-TA
* *
64746647 GGGGGTATTTCGATAATGTTACAAATC
1 GGGGGTATTTCGATAATCTTACAAATA
* *
64746674 GGGGGTATTTCGATAATTTTACGAACTA
1 GGGGGTATTTCGATAATCTTAC-AAATA
* *
64746702 -GAGGTATTTCGATAATTTTACAAAT-
1 GGGGGTATTTCGATAATCTTACAAATA
* * * *
64746727 CGGGGTATTACGGTAATCTTTCAAACT-
1 GGGGGTATTTCGATAATCTTACAAA-TA
* *
64746754 CGGGGTATTTC-AGTAATTTTACAAAT
1 GGGGGTATTTCGA-TAATCTTACAAAT
64746780 TGAGGTCTTA
Statistics
Matches: 351, Mismatches: 66, Indels: 27
0.79 0.15 0.06
Matches are distributed among these distances:
26 27 0.08
27 319 0.91
28 5 0.01
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.35
Consensus pattern (27 bp):
GGGGGTATTTCGATAATCTTACAAATA
Found at i:64746381 original size:54 final size:54
Alignment explanation
Indices: 64746311--64746778 Score: 442
Period size: 54 Copynumber: 8.7 Consensus size: 54
64746301 TATTACGACC
* * * * * * ** *
64746311 ATTTTGCAAACCGGGGGTATTTCAACAATCTTATAAATAGGGGGTATTTCGGTA
1 ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAACCGGGGGTATTTCGATA
* * * * *
64746365 ATTTTACAAATTGGGGGTATTTTGATAATCTTACAAATCGGGGGTATTTCAATA
1 ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAACCGGGGGTATTTCGATA
* * * *
64746419 ATTTTACAAA-TCGAGGTTATTTCGATAATTTTACAAACAGGGGGTATGTCGATA
1 ATTTTACAAACT-GGGGGTATTTCGATAATTTTACAAACCGGGGGTATTTCGATA
* * * *** *
64746473 ATCTTAGAAACTGGGGGTATTT-TAGTAATTTTACAAACCAAAGGTATTTCGTTA
1 ATTTTACAAACTGGGGGTATTTCGA-TAATTTTACAAACCGGGGGTATTTCGATA
** * * *
64746527 ATTTTACAAACTAAGGGTATTTCGATAATTTTATAAACCGGGGGTATTTCAAAA
1 ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAACCGGGGGTATTTCGATA
* * ** * * *
64746581 ATCTTACAGACCAGGGGTATTTCAATAATGTTACAAACCGGGGGTATTTCAATA
1 ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAACCGGGGGTATTTCGATA
* * *
64746635 ATGTTACAAACTGGGGGTATTTCGATAATGTTACAAATCGGGGGTATTTCGATA
1 ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAACCGGGGGTATTTCGATA
* * * * * *
64746689 ATTTTACGAACTAGAGGTATTTCGATAATTTTACAAATC-GGGGTATTACGGTA
1 ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAACCGGGGGTATTTCGATA
*
64746742 ATCTTT-CAAACTCGGGGTATTTC-AGTAATTTTACAAA
1 AT-TTTACAAACTGGGGGTATTTCGA-TAATTTTACAAA
64746779 TTGAGGTCTT
Statistics
Matches: 342, Mismatches: 66, Indels: 13
0.81 0.16 0.03
Matches are distributed among these distances:
52 1 0.00
53 42 0.12
54 297 0.87
55 2 0.01
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.35
Consensus pattern (54 bp):
ATTTTACAAACTGGGGGTATTTCGATAATTTTACAAACCGGGGGTATTTCGATA
Found at i:64746407 original size:81 final size:80
Alignment explanation
Indices: 64746317--64746778 Score: 412
Period size: 81 Copynumber: 5.7 Consensus size: 80
64746307 GACCATTTTG
* * * *
64746317 CAAACCGGGGGTATTTCAACAATCTTATAAATAGGGGGTATTTCGGTAATTTTACAAATTGGGGG
1 CAAA-CGGGGGTATTTCAATAATCTTACAAATAGGGGGTATTTCGATAATTTTACAAACTGGGGG
*
64746382 TATTTTGATAATCTTA
65 TATTTCGATAATCTTA
* * * * *
64746398 CAAATCGGGGGTATTTCAATAATTTTACAAATCGAGGTTATTTCGATAATTTTACAAACAGGGGG
1 CAAA-CGGGGGTATTTCAATAATCTTACAAATAGGGGGTATTTCGATAATTTTACAAACTGGGGG
*
64746463 TATGTCGATAATCTTA
65 TATTTCGATAATCTTA
* * * * * ** * **
64746479 GAAACTGGGGGTATTTTAGTAATTTTACAAACCA-AAGGTATTTCGTTAATTTTACAAACTAAGG
1 CAAAC-GGGGGTATTTCAATAATCTTACAAA-TAGGGGGTATTTCGATAATTTTACAAACTGGGG
*
64746543 GTATTTCGATAATTTTA
64 GTATTTCGATAATCTTA
* * ** * * *
64746560 TAAACCGGGGGTATTTCAAAAATCTTACAGACCA-GGGGTATTTCAATAATGTTACAAACCGGGG
1 CAAA-CGGGGGTATTTCAATAATCTTACA-AATAGGGGGTATTTCGATAATTTTACAAACTGGGG
* *
64746624 GTATTTCAATAATGTTA
64 GTATTTCGATAATCTTA
* * * * * *
64746641 CAAACTGGGGGTATTTCGATAATGTTACAAATCGGGGGTATTTCGATAATTTTACGAACTAGAGG
1 CAAAC-GGGGGTATTTCAATAATCTTACAAATAGGGGGTATTTCGATAATTTTACAAACTGGGGG
*
64746706 TATTTCGATAATTTTA
65 TATTTCGATAATCTTA
* ** * *
64746722 CAAATC-GGGGTATTACGGTAATCTTTCAAACT-CGGGGTATTTC-AGTAATTTTACAAA
1 CAAA-CGGGGGTATTTCAATAATCTTACAAA-TAGGGGGTATTTCGA-TAATTTTACAAA
64746779 TTGAGGTCTT
Statistics
Matches: 310, Mismatches: 62, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
79 1 0.00
80 44 0.14
81 262 0.85
82 3 0.01
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (80 bp):
CAAACGGGGGTATTTCAATAATCTTACAAATAGGGGGTATTTCGATAATTTTACAAACTGGGGGT
ATTTCGATAATCTTA
Found at i:64747027 original size:18 final size:20
Alignment explanation
Indices: 64746998--64747035 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
64746988 CATGCAGGAC
64746998 CACAAGCCCACTT-GGCCCA
1 CACAAGCCCACTTCGGCCCA
64747017 CACAA-CCCACTTCGGCCCA
1 CACAAGCCCACTTCGGCCCA
64747036 ACGAGGCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.26, C:0.50, G:0.13, T:0.11
Consensus pattern (20 bp):
CACAAGCCCACTTCGGCCCA
Found at i:64751939 original size:88 final size:88
Alignment explanation
Indices: 64751834--64752020 Score: 338
Period size: 88 Copynumber: 2.1 Consensus size: 88
64751824 ATATGTGGGA
* * *
64751834 AGCTCACAAAAACTGTGCTAACATGTGGTCGAAACCATTCCTTTTCCTTTTCTTTTACATTGATG
1 AGCTCACACAAACTGTGCTAACATGTGGTCGAAACCATTCCTTTTCATTTTCTTTTACATCGATG
64751899 CTCACTCGAGCTACAAATGGGTC
66 CTCACTCGAGCTACAAATGGGTC
*
64751922 AGCTCACACAAAGTGTGCTAACATGTGGTCGAAACCATTCCTTTTCATTTTCTTTTACATCGATG
1 AGCTCACACAAACTGTGCTAACATGTGGTCGAAACCATTCCTTTTCATTTTCTTTTACATCGATG
64751987 CTCACTCGAGCTACAAATGGGTC
66 CTCACTCGAGCTACAAATGGGTC
64752010 AGCTCACACAA
1 AGCTCACACAA
64752021 GTTGACGGTC
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 95 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (88 bp):
AGCTCACACAAACTGTGCTAACATGTGGTCGAAACCATTCCTTTTCATTTTCTTTTACATCGATG
CTCACTCGAGCTACAAATGGGTC
Found at i:64752470 original size:16 final size:17
Alignment explanation
Indices: 64752438--64752470 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
64752428 AATTCAATCA
64752438 AAAATTCATACTTTTGC
1 AAAATTCATACTTTTGC
*
64752455 AAAATT-ATAGTTTTGC
1 AAAATTCATACTTTTGC
64752471 CCCTATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.42
Consensus pattern (17 bp):
AAAATTCATACTTTTGC
Found at i:64760940 original size:17 final size:18
Alignment explanation
Indices: 64760920--64760955 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
64760910 TAATCTTGTT
64760920 TTAATAAATTAATA-GCA
1 TTAATAAATTAATATGCA
*
64760937 TTAATAATTTAATATGCA
1 TTAATAAATTAATATGCA
64760955 T
1 T
64760956 ATAGTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (18 bp):
TTAATAAATTAATATGCA
Found at i:64768078 original size:19 final size:19
Alignment explanation
Indices: 64768050--64768093 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
64768040 CTCATTCACA
*
64768050 TCTCTTCTCTTACAATTCT
1 TCTCTCCTCTTACAATTCT
* * *
64768069 TCTCTCCTCTTTCACTTTT
1 TCTCTCCTCTTACAATTCT
64768088 TCTCTC
1 TCTCTC
64768094 ATTTTCCTAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.09, C:0.36, G:0.00, T:0.55
Consensus pattern (19 bp):
TCTCTCCTCTTACAATTCT
Found at i:64772585 original size:29 final size:30
Alignment explanation
Indices: 64772538--64772605 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
64772528 TGGCCCAAGA
* *
64772538 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
64772568 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
64772598 GCAAATAT
1 GTAAATAT
64772606 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:64775079 original size:46 final size:46
Alignment explanation
Indices: 64775027--64775346 Score: 507
Period size: 46 Copynumber: 7.0 Consensus size: 46
64775017 AGTGTGCTCT
*
64775027 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
64775073 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
64775119 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATGCCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
64775165 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCAAGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
64775211 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
64775257 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
64775303 ATGACA-GAAAATGAGTAATACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
64775347 TCATGTCAAA
Statistics
Matches: 259, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 1 0.00
46 258 1.00
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:64776804 original size:29 final size:29
Alignment explanation
Indices: 64776685--64776801 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
64776675 TGGCCCATCT
*
64776685 CATTCATATGGCCCATTAGGCCCAATTCA
1 CATTCATATGGCCCATTAGGCCCAAATCA
* *
64776714 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATTAGGCCCAAATCA
* * **
64776743 TATTCATATTGCATATTAGGCCCAAATCA
1 CATTCATATGGCCCATTAGGCCCAAATCA
* * *
64776772 CCTTTATATGGCCCGTTAGGCCCAAATCA
1 CATTCATATGGCCCATTAGGCCCAAATCA
64776801 C
1 C
64776802 CTTATATTCA
Statistics
Matches: 74, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (29 bp):
CATTCATATGGCCCATTAGGCCCAAATCA
Found at i:64777052 original size:16 final size:16
Alignment explanation
Indices: 64777028--64777067 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
64777018 ACTTTTGGCT
*
64777028 TTTTTGGCATTTT-GAC
1 TTTTCGGCATTTTAG-C
64777044 TTTTCGGCATTTTAGC
1 TTTTCGGCATTTTAGC
64777060 TTTTCGGC
1 TTTTCGGC
64777068 TTCTTCCGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.10, C:0.17, G:0.20, T:0.53
Consensus pattern (16 bp):
TTTTCGGCATTTTAGC
Found at i:64780005 original size:17 final size:18
Alignment explanation
Indices: 64779983--64780016 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64779973 TACATTGAAG
64779983 TGTTTT-AATGAAAACCA
1 TGTTTTCAATGAAAACCA
*
64780000 TGTTTTCATTGAAAACC
1 TGTTTTCAATGAAAACC
64780017 CTTCTTAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
TGTTTTCAATGAAAACCA
Found at i:64781108 original size:29 final size:29
Alignment explanation
Indices: 64781074--64781160 Score: 111
Period size: 29 Copynumber: 3.0 Consensus size: 29
64781064 GGCCCATCTT
*
64781074 ATTCATATAGCCCATCAGGCTCAATTCAC
1 ATTCATATAGCCCATCAGGCCCAATTCAC
* *
64781103 ATTCATATGGCCCATCAGGCCCAATTCAT
1 ATTCATATAGCCCATCAGGCCCAATTCAC
* * * *
64781132 ATTCATATGGCCTATTAGGCCCAAATCAC
1 ATTCATATAGCCCATCAGGCCCAATTCAC
64781161 CTTTATATGT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (29 bp):
ATTCATATAGCCCATCAGGCCCAATTCAC
Found at i:64781168 original size:29 final size:29
Alignment explanation
Indices: 64781078--64781196 Score: 105
Period size: 29 Copynumber: 4.1 Consensus size: 29
64781068 CATCTTATTC
* * * * * *
64781078 ATATAGCCCATCAGGCTCAATTCACATTC
1 ATATGGCCCATTAGGCCCAAATCACCTTT
* * ** *
64781107 ATATGGCCCATCAGGCCCAATTCATATTC
1 ATATGGCCCATTAGGCCCAAATCACCTTT
*
64781136 ATATGGCCTATTAGGCCCAAATCACCTTT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
* *
64781165 ATATGTCCCGTTAGGCCCAAATCACC-TT
1 ATATGGCCCATTAGGCCCAAATCACCTTT
64781193 ATAT
1 ATAT
64781197 TCATGCTCAT
Statistics
Matches: 78, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 6 0.08
29 72 0.92
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACCTTT
Found at i:64781169 original size:58 final size:58
Alignment explanation
Indices: 64781073--64781184 Score: 134
Period size: 58 Copynumber: 1.9 Consensus size: 58
64781063 TGGCCCATCT
* *
64781073 TATTCATATAGCCCATCAGGCTCAATTCACATTCATATGGCCCATCAGGCCCAATTCA
1 TATTCATATAGCCCATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATTCA
* * * * * * * *
64781131 TATTCATATGGCCTATTAGGCCCAAATCACCTTTATATGTCCCGTTAGGCCCAA
1 TATTCATATAGCCCATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAA
64781185 ATCACCTTAT
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 44 1.00
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (58 bp):
TATTCATATAGCCCATCAGGCCCAAATCACATTCATATGGCCCATCAGGCCCAATTCA
Found at i:64782590 original size:31 final size:31
Alignment explanation
Indices: 64782552--64782620 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
64782542 GGCCAAGTTG
* *
64782552 GGCGTGTGGACCCATACGGGCAGTCCAAACA
1 GGCGTGTGGACCCACACGAGCAGTCCAAACA
* * *
64782583 GGCGTGTGGGCCCACACGAGCAGTCCACACG
1 GGCGTGTGGACCCACACGAGCAGTCCAAACA
64782614 GGCGTGT
1 GGCGTGT
64782621 TGGTATTTGG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.20, C:0.30, G:0.36, T:0.13
Consensus pattern (31 bp):
GGCGTGTGGACCCACACGAGCAGTCCAAACA
Found at i:64785410 original size:73 final size:73
Alignment explanation
Indices: 64785325--64785475 Score: 239
Period size: 73 Copynumber: 2.1 Consensus size: 73
64785315 ATATAAAGAT
** * * *
64785325 AATAATTAGTGAATATTTATTATTTTTCTGTTCAAATATGTCTCTTACTCCTCTTATTAGCATTC
1 AATAATTAGTGAATATTTATTATTTTTCAATTCAAATATGCCTCCTACTCATCTTATTAGCATTC
64785390 TTACTGAG
66 TTACTGAG
* *
64785398 AATAATTAGTGAATCTTTATTGTTTTTCAATTCAAATATGCCTCCTACTCATCTTATTAGCATTC
1 AATAATTAGTGAATATTTATTATTTTTCAATTCAAATATGCCTCCTACTCATCTTATTAGCATTC
64785463 TTACTGAG
66 TTACTGAG
64785471 AATAA
1 AATAA
64785476 ATTTAACGAG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.45
Consensus pattern (73 bp):
AATAATTAGTGAATATTTATTATTTTTCAATTCAAATATGCCTCCTACTCATCTTATTAGCATTC
TTACTGAG
Found at i:64786952 original size:36 final size:36
Alignment explanation
Indices: 64786905--64786978 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
64786895 TTAAGATTAT
*
64786905 TACGTGACTTTCATCGATGATTATTCTTGATAATAA
1 TACGTGACTTTCATCAATGATTATTCTTGATAATAA
*
64786941 TACGTGACTTTCATCAATGATTATTCTTGATAGTAA
1 TACGTGACTTTCATCAATGATTATTCTTGATAATAA
64786977 TA
1 TA
64786979 TGTTTATCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.42
Consensus pattern (36 bp):
TACGTGACTTTCATCAATGATTATTCTTGATAATAA
Found at i:64791034 original size:19 final size:20
Alignment explanation
Indices: 64791010--64791069 Score: 77
Period size: 19 Copynumber: 3.0 Consensus size: 20
64791000 TTTGAACATA
64791010 AATTCATGCAAATTCTATG-
1 AATTCATGCAAATTCTATGT
*
64791029 AATTCATGCAAATTCTAAGT
1 AATTCATGCAAATTCTATGT
* *
64791049 AATTTATGTCAAATTTTATGT
1 AATTCATG-CAAATTCTATGT
64791070 TTTTATTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 18 0.51
20 7 0.20
21 10 0.29
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.42
Consensus pattern (20 bp):
AATTCATGCAAATTCTATGT
Found at i:64805506 original size:27 final size:27
Alignment explanation
Indices: 64805476--64805653 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
64805466 ATATTGAGTC
* * *
64805476 CGCAAACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
64805503 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
64805530 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
64805558 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
64805585 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
64805612 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
64805639 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
64805654 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:64805622 original size:82 final size:81
Alignment explanation
Indices: 64805497--64805652 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
64805487 TGCTATATAA
* *
64805497 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
64805562 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
64805579 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
64805643 CACTTAGTGC
65 CACTTAGTGC
64805653 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:64816253 original size:27 final size:27
Alignment explanation
Indices: 64816222--64816273 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
64816212 CCAATGAACC
*
64816222 GGGGAATCAGCACTTAGCAACCCCTCG
1 GGGGAATCAGCACATAGCAACCCCTCG
64816249 GGGGAATCAGCACATAGCAACCCCT
1 GGGGAATCAGCACATAGCAACCCCT
64816274 TTCACATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.33, G:0.25, T:0.13
Consensus pattern (27 bp):
GGGGAATCAGCACATAGCAACCCCTCG
Found at i:64816328 original size:103 final size:104
Alignment explanation
Indices: 64816084--64816349 Score: 446
Period size: 104 Copynumber: 2.6 Consensus size: 104
64816074 TAACCGTTAT
* **
64816084 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
64816149 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
64816188 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
64816252 GAATCAGCACATAGCAA-CCCCTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
64816291 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
64816350 TTATATACAA
Statistics
Matches: 152, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
103 75 0.49
104 77 0.51
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.18
Consensus pattern (104 bp):
TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:64816709 original size:29 final size:29
Alignment explanation
Indices: 64816676--64816739 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
64816666 TAATCCACCA
64816676 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
64816705 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
64816735 CCCAA
1 CCCAA
64816740 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:64816713 original size:30 final size:30
Alignment explanation
Indices: 64816683--64816739 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
64816673 CCACCCAACT
64816683 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
64816712 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
64816740 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:64821389 original size:31 final size:29
Alignment explanation
Indices: 64821341--64821409 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 29
64821331 GATATTTTGA
*
64821341 TATTTTA-TAATTATTTAATTAGATAAATAT
1 TATTTTATTAATTATTTAATAAGAT--ATAT
64821371 TATTTTATTAA-TACTTTAATAAGATATAT
1 TATTTTATTAATTA-TTTAATAAGATATAT
64821400 TATTATTATT
1 TATT-TTATT
64821410 TTATTAGTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 8 0.23
30 14 0.40
31 13 0.37
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (29 bp):
TATTTTATTAATTATTTAATAAGATATAT
Found at i:64823605 original size:46 final size:47
Alignment explanation
Indices: 64823538--64823755 Score: 289
Period size: 46 Copynumber: 4.7 Consensus size: 47
64823528 TGGCAACCTG
* *
64823538 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGATATG-AAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA
* * *
64823584 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA
*
64823630 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA
****
64823677 AAAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA
* * * *
64823723 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
64823756 TCACGTCAAA
Statistics
Matches: 155, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 117 0.75
47 38 0.25
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (47 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA
Found at i:64823735 original size:93 final size:92
Alignment explanation
Indices: 64823541--64823755 Score: 288
Period size: 93 Copynumber: 2.3 Consensus size: 92
64823531 CAACCTGTGT
* * ****
64823541 GTAAGACCATGGTTGAAAGATACCATGGCAACTTGATATGAAATGTGTAAGACCATGGTTGAAAG
1 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAAAATAAGACCATGGTTGAAAG
* * * *
64823606 ATACCATGGCAACCTGATATGAGATGT
66 ATACCATGGCAACATGACATGAAATGA
64823633 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAAAAATAAGACCATGGTTGAAA
1 GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG-AAAAAAATAAGACCATGGTTGAAA
64823698 GATACCATGGCAACATGACA-GAAAATGA
65 GATACCATGGCAACATGACATG-AAATGA
* * *
64823726 GTAAGACCATAGTTGAAAGACACTATGGCA
1 GTAAGACCATGGTTGAAAGATACCATGGCA
64823756 TCACGTCAAA
Statistics
Matches: 108, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
92 39 0.36
93 69 0.64
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (92 bp):
GTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAAAATAAGACCATGGTTGAAAG
ATACCATGGCAACATGACATGAAATGA
Done.