Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 202 of 325
Found at i:65564200 original size:19 final size:20
Alignment explanation
Indices: 65564176--65564213 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
65564166 ATTTATCAAA
65564176 ATAAATA-TTATATTAATTG
1 ATAAATATTTATATTAATTG
65564195 ATAAATATTTATATTAATT
1 ATAAATATTTATATTAATT
65564214 TAATATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATAAATATTTATATTAATTG
Found at i:65564532 original size:15 final size:15
Alignment explanation
Indices: 65564512--65564541 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
65564502 AGACTACTCG
65564512 GTTTTGGAAAATTTT
1 GTTTTGGAAAATTTT
65564527 GTTTTGGAAAATTTT
1 GTTTTGGAAAATTTT
65564542 TAAAGCTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (15 bp):
GTTTTGGAAAATTTT
Found at i:65577282 original size:25 final size:25
Alignment explanation
Indices: 65577250--65577301 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
65577240 GTTTATCTTG
* *
65577250 TAAGTAAATATTATATT-ATTTTAA
1 TAAGTAAATATTAGATTAAATTTAA
*
65577274 TAAGATAAATGTTAGATTAAATTTAA
1 TAAG-TAAATATTAGATTAAATTTAA
65577300 TA
1 TA
65577302 TTAAAGTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 4 0.17
25 11 0.48
26 8 0.35
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (25 bp):
TAAGTAAATATTAGATTAAATTTAA
Found at i:65579074 original size:28 final size:28
Alignment explanation
Indices: 65579042--65579137 Score: 97
Period size: 28 Copynumber: 3.4 Consensus size: 28
65579032 AAAGTCCAAG
* *
65579042 TGCAAGCCAAAGGGACGGATAGTCTAAA
1 TGCAAGCCAAAGGGACGGACAATCTAAA
* * *
65579070 TGCAAGCCAATGTGG-TGGACAATCTAAG
1 TGCAAGCCAAAG-GGACGGACAATCTAAA
* *
65579098 TGCAAGCCAAA-GTAGCAGACAATCTAAA
1 TGCAAGCCAAAGGGA-CGGACAATCTAAA
65579126 TGCAAGCCAAAG
1 TGCAAGCCAAAG
65579138 TGGGTATAAG
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.02
28 51 0.94
29 2 0.04
ACGTcount: A:0.40, C:0.20, G:0.25, T:0.16
Consensus pattern (28 bp):
TGCAAGCCAAAGGGACGGACAATCTAAA
Found at i:65579138 original size:28 final size:28
Alignment explanation
Indices: 65579064--65579138 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
65579054 GGACGGATAG
* * **
65579064 TCTAAATGCAAGCCAATGTGGTGGACAA
1 TCTAAATGCAAGCCAAAGTAGCAGACAA
*
65579092 TCTAAGTGCAAGCCAAAGTAGCAGACAA
1 TCTAAATGCAAGCCAAAGTAGCAGACAA
65579120 TCTAAATGCAAGCCAAAGT
1 TCTAAATGCAAGCCAAAGT
65579139 GGGTATAAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.19
Consensus pattern (28 bp):
TCTAAATGCAAGCCAAAGTAGCAGACAA
Found at i:65579192 original size:17 final size:17
Alignment explanation
Indices: 65579170--65579202 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
65579160 ACAATCTAAA
65579170 TGCAAGCCAAAAGTGGG
1 TGCAAGCCAAAAGTGGG
65579187 TGCAAGCCAAAAGTGG
1 TGCAAGCCAAAAGTGG
65579203 CGAACAGTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.18, G:0.33, T:0.12
Consensus pattern (17 bp):
TGCAAGCCAAAAGTGGG
Found at i:65579230 original size:46 final size:45
Alignment explanation
Indices: 65579097--65579231 Score: 159
Period size: 46 Copynumber: 3.0 Consensus size: 45
65579087 GACAATCTAA
*
65579097 GTGCAAGCC-AAAGTAGCAGACAATCTAAATGCAAGCC-AAAGTGG
1 GTGCAAGCCAAAAGTGGCA-ACAATCTAAATGCAAGCCAAAAGTGG
** * *
65579141 GTATAAGCCAAAA-CGACAAACAATCTAAATGCAAGCCAAAAGTGG
1 GTGCAAGCCAAAAGTGGC-AACAATCTAAATGCAAGCCAAAAGTGG
* *
65579186 GTGCAAGCCAAAAGTGGCGAACAGTCCAAATGCAAGCCAAAAGTGG
1 GTGCAAGCCAAAAGTGGC-AACAATCTAAATGCAAGCCAAAAGTGG
65579232 TGACAGACTA
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
44 26 0.35
45 22 0.29
46 27 0.36
ACGTcount: A:0.43, C:0.21, G:0.24, T:0.13
Consensus pattern (45 bp):
GTGCAAGCCAAAAGTGGCAACAATCTAAATGCAAGCCAAAAGTGG
Found at i:65579248 original size:28 final size:29
Alignment explanation
Indices: 65579186--65579254 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 29
65579176 CCAAAAGTGG
*
65579186 GTGCAAGCCAAAAGTGGCGAACAGTCCAA
1 GTGCAAGCCAAAAGTGGCGAACAGACCAA
* * *
65579215 ATGCAAGCCAAAAGTGGTG-ACAGACTAA
1 GTGCAAGCCAAAAGTGGCGAACAGACCAA
65579243 GTGCAAGCCAAA
1 GTGCAAGCCAAA
65579255 CTGGCAGACT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
28 18 0.51
29 17 0.49
ACGTcount: A:0.41, C:0.22, G:0.26, T:0.12
Consensus pattern (29 bp):
GTGCAAGCCAAAAGTGGCGAACAGACCAA
Found at i:65579331 original size:146 final size:144
Alignment explanation
Indices: 65579041--65579399 Score: 416
Period size: 146 Copynumber: 2.5 Consensus size: 144
65579031 GAAAGTCCAA
* *
65579041 GTGCAAGCCAAAG-GGACGGATAGTCTAAATGCAAGCCAATGTGGTGGACA-ATCTAAGTGCAAG
1 GTGCAAGCCAAAGTGG-CGGATAGTCCAAATGCAAGCCAAAGTGGT-GACAGA-CTAAGTGCAAG
* * *
65579104 CCAAAGTAGCAGACAATCTAAATGCAAGCCAAAGTGGGTATAAGCCAAAACGACAAACAATCTAA
63 CCAAACTAGCAGACAATCTAAATGCAAGCCAAAGTGGGTACAAGCCAAAACGACAAACAATCAAA
65579169 ATGCAAGCCAAAAGTGG
128 ATGCAAGCCAAAAGTGG
* *
65579186 GTGCAAGCCAAAAGTGGCGAACAGTCCAAATGCAAGCCAAAAGTGGTGACAGACTAAGTGCAAGC
1 GTGCAAGCC-AAAGTGGCGGATAGTCCAAATGCAAGCC-AAAGTGGTGACAGACTAAGTGCAAGC
* * * * * ** **** *
65579251 CAAACTGGCAGACTATCTAAGTGCAAGCCAAAGTTGGTGCAAGCCAAAGTGACGGGTAGTCAAAA
64 CAAACTAGCAGACAATCTAAATGCAAGCCAAAGTGGGTACAAGCCAAAACGACAAACAATCAAAA
65579316 TGCAAGCCAAAAGTGG
129 TGCAAGCCAAAAGTGG
* * * * * * *
65579332 GTGTAAGCCAAAGTGGTGGATAGTCCAAGTTCAAGCCAAAGTGGCAGACAGTCCAAGTGCAAGCC
1 GTGCAAGCCAAAGTGGCGGATAGTCCAAATGCAAGCCAAAGTGG-TGACAGACTAAGTGCAAGCC
65579397 AAA
65 AAA
65579400 ATGATGGACA
Statistics
Matches: 181, Mismatches: 28, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
144 7 0.04
145 52 0.29
146 112 0.62
147 10 0.06
ACGTcount: A:0.39, C:0.20, G:0.26, T:0.15
Consensus pattern (144 bp):
GTGCAAGCCAAAGTGGCGGATAGTCCAAATGCAAGCCAAAGTGGTGACAGACTAAGTGCAAGCCA
AACTAGCAGACAATCTAAATGCAAGCCAAAGTGGGTACAAGCCAAAACGACAAACAATCAAAATG
CAAGCCAAAAGTGG
Found at i:65579356 original size:45 final size:44
Alignment explanation
Indices: 65579272--65579375 Score: 127
Period size: 45 Copynumber: 2.3 Consensus size: 44
65579262 ACTATCTAAG
* *
65579272 TGCAAGCCAAAGTTGGTGCAAGCCAAAGTGACGGGTAGTCAAAA
1 TGCAAGCCAAAGTGGGTGCAAGCCAAAGTGACGGATAGTCAAAA
* ** * *
65579316 TGCAAGCCAAAAGTGGGTGTAAGCCAAAGTGGTGGATAGTCCAAG
1 TGCAAGCC-AAAGTGGGTGCAAGCCAAAGTGACGGATAGTCAAAA
*
65579361 TTCAAGCCAAAGTGG
1 TGCAAGCCAAAGTGG
65579376 CAGACAGTCC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 15 0.29
45 36 0.71
ACGTcount: A:0.35, C:0.17, G:0.31, T:0.17
Consensus pattern (44 bp):
TGCAAGCCAAAGTGGGTGCAAGCCAAAGTGACGGATAGTCAAAA
Found at i:65579368 original size:28 final size:28
Alignment explanation
Indices: 65579336--65579418 Score: 112
Period size: 28 Copynumber: 3.0 Consensus size: 28
65579326 AAGTGGGTGT
* *
65579336 AAGCCAAAGTGGTGGATAGTCCAAGTTC
1 AAGCCAAAGTGGTGGACAGTCCAAGTGC
**
65579364 AAGCCAAAGTGGCAGACAGTCCAAGTGC
1 AAGCCAAAGTGGTGGACAGTCCAAGTGC
* *
65579392 AAGCCAAAATGATGGACAGTCCAAGTG
1 AAGCCAAAGTGGTGGACAGTCCAAGTG
65579419 TAAGACACTC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.36, C:0.20, G:0.28, T:0.16
Consensus pattern (28 bp):
AAGCCAAAGTGGTGGACAGTCCAAGTGC
Found at i:65580447 original size:19 final size:19
Alignment explanation
Indices: 65580402--65580446 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
65580392 TGTAAAATTC
*
65580402 TATA-TTTTAAATTTATTA
1 TATATTTTTAAATATATTA
65580420 TATATTTTTAAATAT-TTA
1 TATATTTTTAAATATATTA
*
65580438 TGTATTTTT
1 TATATTTTT
65580447 TTAGAATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TATATTTTTAAATATATTA
Found at i:65588232 original size:40 final size:40
Alignment explanation
Indices: 65588172--65588311 Score: 165
Period size: 41 Copynumber: 3.4 Consensus size: 40
65588162 GTAAAAATTA
* * *
65588172 TAAAACACGGAGCAATAGCGGCGTTTTATTAAAAACGCCGC
1 TAAAA-ACAGAGCATTAGCGGCGTTTTACTAAAAACGCCGC
* * *
65588213 TAAAAACAGAGGATTAGCGGCGTTTTACCAAAAAATGCCGC
1 TAAAAACAGAGCATTAGCGGCGTTTTA-CTAAAAACGCCGC
* *
65588254 TAAAAACAGAGCAATAGCGGCGCTTTTAGT-AAAACGCCGC
1 TAAAAACAGAGCATTAGCGGCG-TTTTACTAAAAACGCCGC
65588294 TAAAAACCAGAGCATTAG
1 TAAAAA-CAGAGCATTAG
65588312 AAACTAAAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
40 34 0.40
41 45 0.54
42 5 0.06
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (40 bp):
TAAAAACAGAGCATTAGCGGCGTTTTACTAAAAACGCCGC
Found at i:65589526 original size:14 final size:14
Alignment explanation
Indices: 65589507--65589536 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
65589497 CTAATTTTTC
*
65589507 CCCCAAATCGAAAT
1 CCCCAAATCAAAAT
65589521 CCCCAAATCAAAAT
1 CCCCAAATCAAAAT
65589535 CC
1 CC
65589537 TTCCACCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.40, G:0.03, T:0.13
Consensus pattern (14 bp):
CCCCAAATCAAAAT
Found at i:65589623 original size:14 final size:14
Alignment explanation
Indices: 65589604--65589650 Score: 85
Period size: 14 Copynumber: 3.4 Consensus size: 14
65589594 ATTTCTTGCT
65589604 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
65589618 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
*
65589632 TCTCTAAATCTCTA
1 TCTCTAAATCTCCA
65589646 TCTCT
1 TCTCT
65589651 TTGATTTTCG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.40
Consensus pattern (14 bp):
TCTCTAAATCTCCA
Found at i:65593939 original size:43 final size:43
Alignment explanation
Indices: 65593892--65593990 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 43
65593882 ATATTTTTTT
* * * *
65593892 AAGGTTATATTCTTTAGTGGCGTTTGTGGGAAAAA-CGCCGCTA
1 AAGGTCATAGTCTTTAGCGGCGTTTGT-GAAAAAAGCGCCGCTA
* *
65593935 AAGGTCCTGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTA
1 AAGGTCATAGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTA
*
65593978 AAGGTCATGGTCT
1 AAGGTCATAGTCT
65593991 AAACGCCGCA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 6 0.12
43 42 0.88
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
AAGGTCATAGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTA
Found at i:65595322 original size:12 final size:12
Alignment explanation
Indices: 65595305--65595414 Score: 51
Period size: 12 Copynumber: 8.0 Consensus size: 12
65595295 GACTGTTCGC
65595305 CACTTTGGATTG
1 CACTTTGGATTG
65595317 CACTTTGGATTG
1 CACTTTGGATTG
65595329 TCTATCATTTTGGATTG
1 -C-A-C--TTTGGATTG
65595346 CAC-TTGGACTACCTG
1 CACTTTGGA-T---TG
* *
65595361 TCATTTTGGCTTG
1 -CACTTTGGATTG
65595374 CACTTTGGACTGTCCG
1 CACTTTGGA-T-T--G
*
65595390 CCACTTTGGCTTG
1 -CACTTTGGATTG
65595403 CACTTTGGATTG
1 CACTTTGGATTG
65595415 TCTGTCACTT
Statistics
Matches: 76, Mismatches: 6, Indels: 32
0.67 0.05 0.28
Matches are distributed among these distances:
11 5 0.07
12 31 0.41
13 5 0.07
14 3 0.04
15 5 0.07
16 6 0.08
17 21 0.28
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.41
Consensus pattern (12 bp):
CACTTTGGATTG
Found at i:65595340 original size:29 final size:29
Alignment explanation
Indices: 65595223--65595427 Score: 213
Period size: 28 Copynumber: 7.2 Consensus size: 29
65595213 CAATTTGCCT
* *
65595223 TTTTGGCTTGCA-TTTGGACTGTTTATCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
* *
65595251 TTTTGGCTTGCA-TTTGGACTGTTTATCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
*
65595279 TTTTGGCTTGCA-TTTGGACTGT-TCGCCA
1 TTTTGGCTTGCACTTTGGACTGTCT-GTCA
* * * *
65595307 CTTTGGATTGCACTTTGGATTGTCTATCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
* **
65595336 TTTTGGATTGCAC-TTGGACTACCTGTCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
* *
65595364 TTTTGGCTTGCACTTTGGACTGTCCGCCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
* *
65595393 CTTTGGCTTGCACTTTGGATTGTCTGTCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
65595422 CTTTTG
1 -TTTTG
65595428 CATGATTGGC
Statistics
Matches: 150, Mismatches: 22, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
27 1 0.01
28 85 0.57
29 59 0.39
30 5 0.03
ACGTcount: A:0.13, C:0.20, G:0.22, T:0.45
Consensus pattern (29 bp):
TTTTGGCTTGCACTTTGGACTGTCTGTCA
Found at i:65595369 original size:57 final size:57
Alignment explanation
Indices: 65595248--65595387 Score: 176
Period size: 57 Copynumber: 2.5 Consensus size: 57
65595238 GGACTGTTTA
* * * **
65595248 TCATTTTGGCTTGCA-TTTGGACTGTTTATCATTTTGGCTTGCATTTGGACTGTTCG
1 TCATTTTGGCTTGCACTTTGGACTGTCTATCATTTTGGATTGCACTTGGACTCCTCG
* * * *
65595304 CCACTTTGGATTGCACTTTGGATTGTCTATCATTTTGGATTGCACTTGGACTACCT-G
1 TCATTTTGGCTTGCACTTTGGACTGTCTATCATTTTGGATTGCACTTGGACT-CCTCG
65595361 TCATTTTGGCTTGCACTTTGGACTGTC
1 TCATTTTGGCTTGCACTTTGGACTGTC
65595388 CGCCACTTTG
Statistics
Matches: 69, Mismatches: 13, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
56 12 0.17
57 56 0.81
58 1 0.01
ACGTcount: A:0.14, C:0.19, G:0.22, T:0.44
Consensus pattern (57 bp):
TCATTTTGGCTTGCACTTTGGACTGTCTATCATTTTGGATTGCACTTGGACTCCTCG
Found at i:65602805 original size:19 final size:20
Alignment explanation
Indices: 65602774--65602811 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
65602764 CTTAGGCTTT
65602774 ATATATCATCCATCACACAC
1 ATATATCATCCATCACACAC
*
65602794 ATATAT-ATCCATTACACA
1 ATATATCATCCATCACACA
65602812 TTCTTTTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (20 bp):
ATATATCATCCATCACACAC
Found at i:65606229 original size:7 final size:7
Alignment explanation
Indices: 65606217--65606244 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
65606207 AAAGAAAAAG
65606217 AACAAAC
1 AACAAAC
65606224 AACAAAC
1 AACAAAC
65606231 AACAAAC
1 AACAAAC
65606238 AACAAAC
1 AACAAAC
65606245 GAAACAGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (7 bp):
AACAAAC
Found at i:65607202 original size:41 final size:39
Alignment explanation
Indices: 65607146--65607277 Score: 142
Period size: 40 Copynumber: 3.4 Consensus size: 39
65607136 GAATTCGAGT
*
65607146 CGATGAGACACTGGGTGTCAATTTACTACTTTAGATTAATT
1 CGATGAGACACTGGGTGTCAATTTA-TACTTTAGATT-ATC
* ** * *
65607187 CGATGAGACACTGGGTGCCAA-TT-TACTTCGGTTTAGC
1 CGATGAGACACTGGGTGTCAATTTATACTTTAGATTATC
* *
65607224 CGATGAGACACTGGGTGTCAATTTATTACTTCAAATTATC
1 CGATGAGACACTGGGTGTCAATTTA-TACTTTAGATTATC
*
65607264 CGATGAGGCACTGG
1 CGATGAGACACTGG
65607278 ATGCCAAATT
Statistics
Matches: 76, Mismatches: 12, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
37 21 0.28
38 10 0.13
40 25 0.33
41 20 0.26
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAATTTATACTTTAGATTATC
Found at i:65609678 original size:89 final size:89
Alignment explanation
Indices: 65609529--65609693 Score: 285
Period size: 89 Copynumber: 1.9 Consensus size: 89
65609519 TTAAAAACTA
* * * *
65609529 GTGGTGGAGGAGGTGTAAAGTTGGTTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGT
1 GTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGT
65609594 TTTTTCTTTTAGGAAACAGAATTG
66 TTTTTCTTTTAGGAAACAGAATTG
*
65609618 GTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAACAATAAGGAAACATATGT
1 GTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGT
65609683 TTTTTCTTTTA
66 TTTTTCTTTTA
65609694 AAAAACAAGG
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 71 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (89 bp):
GTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGT
TTTTTCTTTTAGGAAACAGAATTG
Found at i:65610472 original size:529 final size:532
Alignment explanation
Indices: 65609470--65610534 Score: 2091
Period size: 529 Copynumber: 2.0 Consensus size: 532
65609460 AGTCATAAGC
65609470 TTGTAGGTATGTATTCATTTTGACTACCCAAATATGGTAATTTTCACTGTTAAAAACTAGTGGTG
1 TTGTAGGTATGTATTCATTTTGACTACCCAAATATGGTAATTTTCACTGTTAAAAACTAGTGGTG
65609535 GAGGAGGTGTAAAGTTGGTTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGTTTTTTC
66 GAGGAGGTGTAAAGTTGGTTGAAGACATTTTTAC-AAAAAACAACAAGGAAACATATGTTTTTTC
65609600 TTTTAGGAAACAGAATTGGTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAA
130 TTTTAGGAAACAGAATTGGTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAA
65609665 CAATAAGGAAACATATGTTTTTTCTTTTAAAAAACAAGGGCCCTCAAAGATTACTGACTCTAGAT
195 CAATAAGGAAACATATGTTTTTTCTTTTAAAAAACAAGGGCCCTCAAAGATTACTGACTCTAGAT
65609730 ACTAATTGTTGGGTTTTTTTTATAGAAGAAAAAAAAGAAAACAAGGAATAAATTTGACAATCAAA
260 ACTAATTGTTGGGTTTTTTTTATAGAAGAAAAAAAAGAAAACAAGGAATAAATTTGACAATCAAA
65609795 TCTGGCTTGCTATATCATTGTTGGTCTACACTTTTTGCTTACAAAGTACAACTTTAAATAAGAAA
325 TCTGGCTTGCTATATCATTGTTGGTCTACACTTTTTGCTTACAAAGTACAACTTTAAATAAGAAA
65609860 ATTTTACCAATCGCAAGTTGACAAGTTGGCAAGTCTAAATACATGAATTCACTCGTTGGTTGATT
390 ATTTTACCAATCGCAAGTTGACAAGTTGGCAAGTCTAAATACATGAATTCACTCGTTGGTTGATT
*
65609925 TTTGTCTTTTCAGCACCGTTTACATTAACTTATCAAAATAAAGATAAATAAAATAATTTGACAAC
455 TTTGTCTTTTCAGCACCGTTTACATTAACTTATCAAAATAAAGATAAATAAAATAATCTGACAAC
65609990 TTTTCCTAACAAG
520 TTTTCCTAACAAG
65610003 TTGTAGGTATGTATTCATTTTGACTACCCAAATATGGTAATTTTCACTGTTAAAAACTAGTGGTG
1 TTGTAGGTATGTATTCATTTTGACTACCCAAATATGGTAATTTTCACTGTTAAAAACTAGTGGTG
65610068 GAGGAGGTGTAAAGTTGGTTGAAGACATTTTTAC-AAAAA-AACAAGGAAACATATGTTTTTTCT
66 GAGGAGGTGTAAAGTTGGTTGAAGACATTTTTACAAAAAACAACAAGGAAACATATGTTTTTTCT
65610131 TTTAGGAAACAGAATTGGTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAA-
131 TTTAGGAAACAGAATTGGTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAAC
65610195 AATAAGGAAACATATGTTTTTTCTTTTAAAAAACAAGGGCCCTCAAAGATTACTGACTCTAGATA
196 AATAAGGAAACATATGTTTTTTCTTTTAAAAAACAAGGGCCCTCAAAGATTACTGACTCTAGATA
65610260 CTAATTGTTGGGTTTTTTTTATAGAAGAAAAAAAAGAAAACAAGGAATAAATTTGACAATCAAAT
261 CTAATTGTTGGGTTTTTTTTATAGAAGAAAAAAAAGAAAACAAGGAATAAATTTGACAATCAAAT
65610325 CTGGCTTGCTATATCATTGTTGGTCTACACTTTTTGCTTACAAAGTACAACTTTAAATAAGAAAA
326 CTGGCTTGCTATATCATTGTTGGTCTACACTTTTTGCTTACAAAGTACAACTTTAAATAAGAAAA
65610390 TTTTACCAATCGCAAGTTGACAAGTTGGCAAGTCTAAATACATGAATTCACTCGTTGGTTGATTT
391 TTTTACCAATCGCAAGTTGACAAGTTGGCAAGTCTAAATACATGAATTCACTCGTTGGTTGATTT
65610455 TTGTCTTTTCAGCACCGTTTACATTAACTTATCAAAATAAAGATAAATAAAATAATCTGACAACT
456 TTGTCTTTTCAGCACCGTTTACATTAACTTATCAAAATAAAGATAAATAAAATAATCTGACAACT
65610520 TTTCCTAACAAG
521 TTTCCTAACAAG
65610532 TTG
1 TTG
65610535 GCAAATTGTT
Statistics
Matches: 531, Mismatches: 1, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
529 339 0.64
530 88 0.17
531 5 0.01
533 99 0.19
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (532 bp):
TTGTAGGTATGTATTCATTTTGACTACCCAAATATGGTAATTTTCACTGTTAAAAACTAGTGGTG
GAGGAGGTGTAAAGTTGGTTGAAGACATTTTTACAAAAAACAACAAGGAAACATATGTTTTTTCT
TTTAGGAAACAGAATTGGTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAAC
AATAAGGAAACATATGTTTTTTCTTTTAAAAAACAAGGGCCCTCAAAGATTACTGACTCTAGATA
CTAATTGTTGGGTTTTTTTTATAGAAGAAAAAAAAGAAAACAAGGAATAAATTTGACAATCAAAT
CTGGCTTGCTATATCATTGTTGGTCTACACTTTTTGCTTACAAAGTACAACTTTAAATAAGAAAA
TTTTACCAATCGCAAGTTGACAAGTTGGCAAGTCTAAATACATGAATTCACTCGTTGGTTGATTT
TTGTCTTTTCAGCACCGTTTACATTAACTTATCAAAATAAAGATAAATAAAATAATCTGACAACT
TTTCCTAACAAG
Found at i:65610768 original size:29 final size:29
Alignment explanation
Indices: 65610717--65610792 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
65610707 AGTTTGCCTT
*
65610717 TTTAGCTTGCA-TTTGAACTGTTCGTCAC
1 TTTAGCTTGCACTTTGGACTGTTCGTCAC
65610745 TTTAGCTTGCACTTTGGACTGTTCGTCAC
1 TTTAGCTTGCACTTTGGACTGTTCGTCAC
* *
65610774 TTTGGCTTGTACTTTGGAC
1 TTTAGCTTGCACTTTGGAC
65610793 AACTTTCAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 11 0.25
29 33 0.75
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (29 bp):
TTTAGCTTGCACTTTGGACTGTTCGTCAC
Found at i:65611183 original size:8 final size:8
Alignment explanation
Indices: 65611170--65611198 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
65611160 TGCCTAATCT
65611170 CATACATG
1 CATACATG
65611178 CATACATG
1 CATACATG
65611186 CATACATG
1 CATACATG
65611194 CATAC
1 CATAC
65611199 GCAAACAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.24
Consensus pattern (8 bp):
CATACATG
Found at i:65614911 original size:14 final size:14
Alignment explanation
Indices: 65614892--65614919 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
65614882 ATTATTCTCA
65614892 ATTTATAATTTAAT
1 ATTTATAATTTAAT
65614906 ATTTATAATTTAAT
1 ATTTATAATTTAAT
65614920 TTATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTTATAATTTAAT
Found at i:65615525 original size:4 final size:4
Alignment explanation
Indices: 65615508--65615545 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
65615498 TTCTAACCTA
*
65615508 ATCT ATCT ACCT ATCT ATCT ATCT ATCT ATCT ATCT AT
1 ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT ATCT AT
65615546 ATATATATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.47
Consensus pattern (4 bp):
ATCT
Found at i:65615525 original size:12 final size:12
Alignment explanation
Indices: 65615503--65615545 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
65615493 CACATTTCTA
65615503 ACCTAATCTATCT
1 ACCT-ATCTATCT
65615516 ACCTATCTATCT
1 ACCTATCTATCT
*
65615528 ATCTATCTATCT
1 ACCTATCTATCT
*
65615540 ATCTAT
1 ACCTAT
65615546 ATATATATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 25 0.86
13 4 0.14
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (12 bp):
ACCTATCTATCT
Found at i:65618007 original size:35 final size:35
Alignment explanation
Indices: 65617962--65618064 Score: 125
Period size: 35 Copynumber: 2.9 Consensus size: 35
65617952 TACTCTTTGT
*
65617962 TTGGCGTGTTTCGGTTGGATTAGCTCTTTTGAGCA
1 TTGGCGTGTTTCGGTTGGATTAACTCTTTTGAGCA
* * *
65617997 TTGGTGTGTTTCAGTTGGATTAACTCTTTTGAGTA
1 TTGGCGTGTTTCGGTTGGATTAACTCTTTTGAGCA
* * ** *
65618032 TTGGCATGTTTCGGGTGGACAAACTCTTGTGAG
1 TTGGCGTGTTTCGGTTGGATTAACTCTTTTGAG
65618065 TACTTGGGTG
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 57 1.00
ACGTcount: A:0.16, C:0.13, G:0.30, T:0.42
Consensus pattern (35 bp):
TTGGCGTGTTTCGGTTGGATTAACTCTTTTGAGCA
Found at i:65618744 original size:15 final size:14
Alignment explanation
Indices: 65618724--65618756 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
65618714 TATTTAAGCT
65618724 AAAGTAAGTAAATGG
1 AAAGTAAGTAAAT-G
65618739 AAAGTAAGTAAATG
1 AAAGTAAGTAAATG
65618753 AAAG
1 AAAG
65618757 GTTTCAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.58, C:0.00, G:0.24, T:0.18
Consensus pattern (14 bp):
AAAGTAAGTAAATG
Found at i:65619042 original size:17 final size:16
Alignment explanation
Indices: 65619020--65619053 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
65619010 CTTCACAATT
65619020 ATTGGAAGCTCGATCAG
1 ATTGGAAGCTCG-TCAG
*
65619037 ATTGGAAGTTCGTCAG
1 ATTGGAAGCTCGTCAG
65619053 A
1 A
65619054 GATCTATCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (16 bp):
ATTGGAAGCTCGTCAG
Found at i:65621015 original size:48 final size:48
Alignment explanation
Indices: 65620745--65621013 Score: 324
Period size: 48 Copynumber: 5.6 Consensus size: 48
65620735 GGTAAATTGT
* * * * * *
65620745 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
* * * * * * *
65620793 CGATGCCATGTCCCAGACATGGTGTTACACTAGCTCTCGTCTCATTGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
* *
65620841 CGATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCATGAT-GTGGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGTGGC
* *
65620889 CGATGTCATATCCCAGACATGGTCTTACACTGGCTCTCATATCGTGTC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
* * * *
65620937 CGATGTCATGTCCTAGAGATGGTCTTACATTAGCTCTCATATCGTGGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
*
65620985 CGATGTCATGTCCTAGACATGGTCTTACA
1 CGATGTCATGTCCCAGACATGGTCTTACA
65621014 TTGACGCACA
Statistics
Matches: 191, Mismatches: 28, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
47 2 0.01
48 188 0.98
49 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (48 bp):
CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
Found at i:65621384 original size:30 final size:31
Alignment explanation
Indices: 65621345--65621402 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
65621335 ATAATTTATA
65621345 TTTTGACAAAATGATCATTTTACCCCTAGAC
1 TTTTGACAAAATGATCATTTTACCCCTAGAC
* *
65621376 TTTT-ACAAAATTATTATTTTACCCCTA
1 TTTTGACAAAATGATCATTTTACCCCTA
65621403 AGCTCGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.41
Consensus pattern (31 bp):
TTTTGACAAAATGATCATTTTACCCCTAGAC
Found at i:65625230 original size:26 final size:26
Alignment explanation
Indices: 65625195--65625245 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
65625185 AATGTGAAAG
*
65625195 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
65625221 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
65625246 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:65625379 original size:104 final size:103
Alignment explanation
Indices: 65625117--65625382 Score: 451
Period size: 103 Copynumber: 2.6 Consensus size: 103
65625107 TTGTATATAA
** * *
65625117 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
65625182 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
65625220 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
65625285 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
**
65625324 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCA
65625383 ATAACGGCTA
Statistics
Matches: 152, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
103 92 0.61
104 60 0.39
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:65633617 original size:607 final size:608
Alignment explanation
Indices: 65631457--65637346 Score: 10289
Period size: 607 Copynumber: 9.7 Consensus size: 608
65631447 TGTCCTTACA
65631457 AACCGAAACGCGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGT
1 AACCG-AAC-CGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGT
65631522 ACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGA
64 ACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGA
* *
65631587 TCCCAAATTAGTCTAACATTATCTTCTAGTCTCGGAAACCAACTAAGGACCCAAAACTCGTCGCT
129 TCCCAAATTAGTCTAACATTATCTTC-AGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCT
*
65631652 CACCCAACTCAGTCTAATATAACAGAGTATGACACTTATAACCATATAGAGCCTCGTAAGGTGCC
193 CACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCC
*
65631717 ATCTAGATG-TAGATTGGAAACTGCTATTGTA-GCGAACTCAACTAACGGTAAAAAATCCTCCCA
258 ATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCA
* *
65631780 ACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTGTATAAATCACCCTCTCAA
323 ACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAA
*
65631845 ATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCTAGAGCCTTGTGA
388 ATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGA
* * *
65631910 AGTTTCTTCTAGAACC--GAAGTGAAGAGAGGATCCTTATCAGAGATTATAGAAATTGGAACACC
453 AGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCC
65631973 ATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAG-CCATCTGAA
518 ATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAA
*
65632037 CAGGAAT-AAATGAG-GGACATGGTC
583 CAGGAATAAAATGAGCGGACTTGGTC
* * * *
65632061 AACCGAACCGTAGAACCTTTTTCCACGGAGATACCTTAGGAAATACAAAGTTCTCCACAGAGTAC
1 AACCGAACCGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
* *
65632126 TTGATATCTCTGATTTTCAGATTTACATAAGACTTCTATCTATCAGAAGACGCCTTCAAACGATC
66 TTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATC
* *
65632191 CCAAATTAGTCTAACATTATCCTCAGTCTCGGAAACCAACTCAGGACCCAAAACCTGTCGCTCAC
131 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
*
65632256 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACC-CAT--AGCC-C--AAGGTGCCATC
196 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
65632315 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
261 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
65632380 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCATAGTATATGAATCACCCTCTCAAAT
326 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTC-TAGTATATGAATCACCCTCTCAAAT
*
65632445 TGACCATCGGTCTGAGGATGGAACACAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTG-AG
390 TGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAG
*
65632509 -TTCTTCTAGAACCATGAAGTGAAGAGAGGATCCATATCAGAGA-TATTGAAATTGGAACCCCAT
455 TTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCAT
* *
65632572 GCAGTCTTACAATCTGAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCAGAACA
520 GCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACA
*
65632637 GGAAT-AAATGA-CGGCCTTGGTC
585 GGAATAAAATGAGCGGACTTGGTC
* * *
65632659 AACCGAACTGTAGAACCTTTTTCCACGGAGATACCTTCAGAAATACAAAGTCCCCCAAAGAGTAC
1 AACCGAACCGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
* * *
65632724 TCGATATCTCTGATATTT-AGACTTGCATAAGACTTTTATCTATCAGAAGACGCCTTCAGACGAT
66 TTGATATCTCTGAT-TTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGAT
*
65632788 CCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCTGTCGCTCA
130 CCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCA
* *
65632853 CCCAACTCAGTCTAATATAACAGAGTATGAC-CTTATGACCATATAGGGTCTCGTAAGGTGCCAT
195 CCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCAT
*
65632917 CTAGATGCTAGATTGGAAACTATTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAAC
260 CTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAAC
*
65632982 TACCTCAAAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAAT
325 TACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAAT
* *
65633047 TTACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGTA-CCAGAGCCTTGTGAAG
390 TGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAG
* * *
65633111 TTTCTTCTAG-AGCGTGAAGTGAAGAGAGGATCAATATCAGAGATTATTGAAATTGGAACTCCAT
455 TTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCAT
* * * *
65633175 GTAGTCTTACAATCTCAAGAAATGTAGAGCTTCACTAACTTTTGCGGAGAGTAATCCATCTGAAA
520 GCAGTCTTACAATCTC-AGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAAC
*
65633240 AGGAATAAAATGAGCGAACTTGGTC
584 AGGAATAAAATGAGCGGACTTGGTC
* *
65633265 AAACGAACCGTAAGAACCTTTTTCCACGGA-TTACCTTAAG-AATACAAAGTCCCCCATAGAGTA
1 AACCGAACCGT-AGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTA
* *
65633328 CTTGATATCTTCTCATTTTCAGATTTGCATAAGAATTCTATCTATCAAGAA-ACGCCTTCAGACG
65 CTTGATATC-TCTGATTTTCAGATTTGCATAAGACTTCTATCTATC-AGAAGACGCCTTCAGACG
* *
65633392 ATCCCAAATTAGTCTAACATTATCCTCAGTCTCGGAAACCAACTCAGGACCCAAAACCTGTCGCT
128 ATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCT
*
65633457 CACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAAAGCCTCGTAAGGTGCC
193 CACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCC
*
65633522 ATCTAGATGCTAGATTGGAAACTGCTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCA
258 ATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCA
65633587 ACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAA
323 ACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAA
*
65633652 ATTGACCATCGGTCTGAGGATGGAACACAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGA
388 ATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGA
*
65633717 AGTTTCTTCTAGAACCATGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCC
453 AGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCC
*
65633782 ATGCAGTCTTACAATCTGAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAA
518 ATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAA
65633847 CAGGAATAAAATGAGCGGACTTGGTC
583 CAGGAATAAAATGAGCGGACTTGGTC
*
65633873 AACCGAACTGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCA-AGAGTAC
1 AACCGAACCGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
*
65633937 TTGATATCTCTGATTTTCAGATTTGCATAAGACTTTTATCTATCAGAAGACGCCTTCAGACGATC
66 TTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATC
65634002 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
131 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
65634067 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
196 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
*
65634132 TAGATGCTAGATTGGAAAC---TATTTTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
261 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
65634194 ACCTCA-AAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
326 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
65634258 GACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGT
391 GACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGT
*
65634323 TTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACTCCATG
456 TTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATG
*
65634388 CAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAAAAG
521 CAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAG
*
65634453 GAATAAAATGAGCAGACTTGGTC
586 GAATAAAATGAGCGGACTTGGTC
*
65634476 AACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
1 AACCGAACCGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
65634541 TTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATC
66 TTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATC
65634606 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
131 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
65634671 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
196 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
65634736 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
261 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
65634801 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
326 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
65634866 GACCATCGGTCTGAGGATGGAACGCAGTACTGAAGT-CAATCTCGAACCCAGAGCCTTGTGAAGT
391 GACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGT
65634930 TTCTTCTAGAA-CGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATG
456 TTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATG
65634994 CAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAG
521 CAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAG
65635059 GAATAAAATGAGCGGACTTGGTC
586 GAATAAAATGAGCGGACTTGGTC
* *
65635082 AACCGAACTGTAGAACCTTTTTCCACGTAGA-ACCTTTTTCCACGGAGTTACCTTAATACAAAGT
1 AACCGAACCGTAGAACCTTTTTCCACGGAGATACC---TT--A---AG--A----AATACAAAGT
65635146 CCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGAC
52 CCCCCATAGAGTACTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGAC
65635211 GCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCA-GACCCAA
117 GCCTTCAGACGATCCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAA
65635275 AACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCT
182 AACCCGTCGCTCACCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCT
65635340 CGTAAGGTGCCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAA
247 CGTAAGGTGCCATCTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAA
65635405 AAATCCTCCCAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAAT
312 AAATCCTCCCAACTACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAAT
*
65635470 CACCCTCTCAAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTTCAATCTCGAACCCA
377 CACCCTCTCAAATTGACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCA
65635535 GAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAA
442 GAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAA
65635600 ATTGGAACCCCATGCAGTCTTACAATCTC-GAAAATGTAGAGCTTCACTAACTTTTGCAGAGAGT
507 ATTGGAACCCCATGCAGTCTTACAATCTCAG-AAATGTAGAGCTTCACTAACTTTTGCAGAGAGT
65635664 AGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTC
571 AGTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTC
65635702 AACCGAACCGTAGAACCTTTTTCCACGGAG-TACCTTAAGAAATACAAAGT-CCCCA-AGAGTAC
1 AACCGAACCGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
* *
65635764 TTGATATCTCTGATTTTAAGATTTGCATAAGACTTCTATATATCAGAAGACGCCTTCAGACGATC
66 TTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATC
* *
65635829 CAAAATTAGTCTAACATTATC-TCAGTCTCGAAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
131 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
65635893 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
196 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
65635958 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
261 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
65636023 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
326 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
65636088 GACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGAACCCA
391 GACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCT------------C--GAACCCA
65636153 GAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAA
442 GAGCCTTGTGAAGTTTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAA
65636218 ATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTA
507 ATTGGAACCCCATGCAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTA
*
65636283 GTCCATCTGAAAAGGAATAAAATGAG-GGACTTGGTC
572 GTCCATCTGAACAGGAATAAAATGAGCGGACTTGGTC
*
65636319 AACCGAACCGTAGAACCTTTTTCCACGGAGTTACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
1 AACCGAACCGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
65636384 TTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATC
66 TTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATC
65636449 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
131 CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
65636514 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
196 CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
65636579 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
261 TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
*
65636644 ACCTCAGAAATAAATCACATAGCACCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
326 ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
65636709 GACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGT
391 GACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGT
* **
65636774 TTCTTCTAGAACC-TAAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAATTCCATG
456 TTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATG
* * * * *
65636838 CAGTCTTACAATATTAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCTATTTGAAAAG
521 CAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAG
*
65636903 GATTAAAATGAGCGGACTTGGTC
586 GAATAAAATGAGCGGACTTGGTC
*
65636926 AACCGAACCGTAGAACCTTTTTCCACGGAGATATCTTAAGAAATACAAAG-CCACCCATAGAGTA
1 AACCGAACCGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCC-CCCATAGAGTA
*
65636990 CTTGATATCTCTGATTTTCAGATTTGCATAAGACATCTATCTATCAGAAGACGCCTTCAGACGAT
65 CTTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGAT
* * *
65637055 CCCATATTAGTCTAACATTAGCTTCAGTCTCGGAAACGAACTCAGGACCCAAAACCCGTCGCTCA
130 CCCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCA
*
65637120 CCCAACTCAGTCTAATATAATAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCAT
195 CCCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCAT
* * *
65637185 CTAGATTCTAGATTGGGAACTGTTATTGTAAGCGAACTCAACTAACGGTAAAAAATCCTCCCAAC
260 CTAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAAC
*
65637250 TACCTCAGAAATAAATCACATAGCTCCAAATCATATACTCTAGTATATGAATCACCCTCTCAAAT
325 TACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAAT
*
65637315 TGACCATCGGTCTGATGATGGAACGCAGTACT
390 TGACCATCGGTCTGAGGATGGAACGCAGTACT
65637347 TGTAGCAGCC
Statistics
Matches: 5065, Mismatches: 146, Indels: 147
0.95 0.03 0.03
Matches are distributed among these distances:
595 17 0.00
596 34 0.01
597 156 0.03
598 354 0.07
599 3 0.00
600 4 0.00
601 91 0.02
602 241 0.05
603 503 0.10
604 671 0.13
605 47 0.01
606 466 0.09
607 973 0.19
608 224 0.04
609 81 0.02
610 2 0.00
612 2 0.00
613 2 0.00
615 2 0.00
616 1 0.00
617 42 0.01
618 432 0.09
619 178 0.04
620 260 0.05
621 279 0.06
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (608 bp):
AACCGAACCGTAGAACCTTTTTCCACGGAGATACCTTAAGAAATACAAAGTCCCCCATAGAGTAC
TTGATATCTCTGATTTTCAGATTTGCATAAGACTTCTATCTATCAGAAGACGCCTTCAGACGATC
CCAAATTAGTCTAACATTATCTTCAGTCTCGGAAACCAACTCAGGACCCAAAACCCGTCGCTCAC
CCAACTCAGTCTAATATAACAGAGTATGACACTTATGACCATATAGAGCCTCGTAAGGTGCCATC
TAGATGCTAGATTGGAAACTGTTATTGTAGGCGAACTCAACTAACGGTAAAAAATCCTCCCAACT
ACCTCAGAAATAAATCACATAGCTCCAAATCATATCCTCTAGTATATGAATCACCCTCTCAAATT
GACCATCGGTCTGAGGATGGAACGCAGTACTGAAGTCCAATCTCGAACCCAGAGCCTTGTGAAGT
TTCTTCTAGAACCGTGAAGTGAAGAGAGGATCCATATCAGAGATTATTGAAATTGGAACCCCATG
CAGTCTTACAATCTCAGAAATGTAGAGCTTCACTAACTTTTGCAGAGAGTAGTCCATCTGAACAG
GAATAAAATGAGCGGACTTGGTC
Found at i:65635113 original size:17 final size:17
Alignment explanation
Indices: 65635091--65635125 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
65635081 CAACCGAACT
65635091 GTAGAACCTTTTTCCAC
1 GTAGAACCTTTTTCCAC
65635108 GTAGAACCTTTTTCCAC
1 GTAGAACCTTTTTCCAC
65635125 G
1 G
65635126 GAGTTACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (17 bp):
GTAGAACCTTTTTCCAC
Found at i:65636151 original size:14 final size:14
Alignment explanation
Indices: 65636132--65636160 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
65636122 GTCCAATCTC
65636132 GAACCCAGAGCCTT
1 GAACCCAGAGCCTT
65636146 GAACCCAGAGCCTT
1 GAACCCAGAGCCTT
65636160 G
1 G
65636161 TGAAGTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.34, G:0.24, T:0.14
Consensus pattern (14 bp):
GAACCCAGAGCCTT
Found at i:65638692 original size:103 final size:105
Alignment explanation
Indices: 65638552--65638818 Score: 423
Period size: 103 Copynumber: 2.6 Consensus size: 105
65638542 TGTATATAAA
** * * *
65638552 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
65638617 TGAAATG-TGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
65638656 AGGGGTTGCT-AGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCG-TGATCCACCATATCT
65638719 TTGAAATGTTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * *
65638760 AGGGGTTGCTAAGTGATGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCA
65638819 ATAACGGTTA
Statistics
Matches: 150, Mismatches: 9, Indels: 7
0.90 0.05 0.04
Matches are distributed among these distances:
103 54 0.36
104 53 0.35
105 43 0.29
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:65644746 original size:96 final size:97
Alignment explanation
Indices: 65644581--65644865 Score: 296
Period size: 96 Copynumber: 3.0 Consensus size: 97
65644571 GGGTGAATTG
* * * *
65644581 CCGATGCCATGT-TCCAAACATGGTCTTACACTGGCT-TACATG-TCGAGGTCAATGCCATGTTC
1 CCGATGCCATGTCT-CAAACATGGTCTTACACTGGCTCT-CATGATCGTGGCCGATGCCATGTCC
* * * * * * * ***
65644643 TAGACATGGTGTTACACTAGCTCTCATCTTATTG
64 CAAACATGGTCTTACACTAGCCCACATATCAACA
* * *
65644677 TCGATGTCATGTCTCAGACATGGTCTTACACTGGCTCTCATGAT-GTGGCCGATGCCATGTCCCA
1 CCGATGCCATGTCTCAAACATGGTCTTACACTGGCTCTCATGATCGTGGCCGATGCCATGTCCCA
65644741 AACATGGTCTTACACTAGCCCACATATCAACA
66 AACATGGTCTTACACTAGCCCACATATCAACA
* * *
65644773 CCGATGCCATGTCTCAAACATGGTCTTACGCTGGCTCTTAT-ATCTTGGCCGATGCCATGTCCCA
1 CCGATGCCATGTCTCAAACATGGTCTTACACTGGCTCTCATGATCGTGGCCGATGCCATGTCCCA
*
65644837 GAA-ATGGTCTTACACT-GACACACATATCA
66 -AACATGGTCTTACACTAG-CCCACATATCA
65644866 CCCAAATATC
Statistics
Matches: 159, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
95 3 0.02
96 151 0.95
97 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (97 bp):
CCGATGCCATGTCTCAAACATGGTCTTACACTGGCTCTCATGATCGTGGCCGATGCCATGTCCCA
AACATGGTCTTACACTAGCCCACATATCAACA
Found at i:65644844 original size:144 final size:144
Alignment explanation
Indices: 65644580--65644853 Score: 327
Period size: 144 Copynumber: 1.9 Consensus size: 144
65644570 AGGGTGAATT
* * ** * * ***
65644580 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTTACATGTCGAGGTCAATGCCATGTTCTA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAACACCAATGCCATGTTCTA
* * * * * * * *
65644645 GACATGGTGTTACACTAGCTCTCATCTTATTGTCGATGTCATGTCTCAGACATGGTCTTACACTG
66 AACATGGTCTTACACTAGCTCTCATATTATGGCCGATGCCATGTCCCAGAAATGGTCTTACACTG
65644710 GCTCTCATGATGTG
131 GCTCTCATGATGTG
*
65644724 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAACACCGATGCCATG-TCTC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAACACCAATGCCATGTTCT-
* * *
65644788 AAACATGGTCTTACGCTGGCTCTTATATCT-TGGCCGATGCCATGTCCCAGAAATGGTCTTACAC
65 AAACATGGTCTTACACTAGCTCTCATAT-TATGGCCGATGCCATGTCCCAGAAATGGTCTTACAC
65644852 TG
129 TG
65644854 ACACACATAT
Statistics
Matches: 107, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
143 3 0.03
144 103 0.96
145 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (144 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAACACCAATGCCATGTTCTA
AACATGGTCTTACACTAGCTCTCATATTATGGCCGATGCCATGTCCCAGAAATGGTCTTACACTG
GCTCTCATGATGTG
Found at i:65644864 original size:48 final size:48
Alignment explanation
Indices: 65644580--65644865 Score: 204
Period size: 48 Copynumber: 6.0 Consensus size: 48
65644570 AGGGTGAATT
* * * *
65644580 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTTACATGTCGA-G
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCACATATC-ATG
* * * * * * * * * *
65644628 GTCAATGCCATGTTCTAGACATGGTGTTACACT-AGCTCTCATCTTATT
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGA-CTCACATATCATG
* * * * * * *
65644676 GTCGATGTCATGTCTCAGACATGGTCTTACACTGGCTCTCATGAT-GTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCACAT-ATCATG
* **
65644724 GCCGATGCCATGTCCCAAACATGGTCTTACACT-AGCCCACATATCAAC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGA-CTCACATATCATG
* * * * ** *
65644772 ACCGATGCCATGTCTCAAACATGGTCTTACGCTGGCTCTTATATCTTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCACATATCATG
*
65644820 GCCGATGCCATGTCCCAGAA-ATGGTCTTACACTGACACACATATCA
1 GCCGATGCCATGTCCCA-AACATGGTCTTACACTGACTCACATATCA
65644866 CCCAAATATC
Statistics
Matches: 181, Mismatches: 49, Indels: 16
0.74 0.20 0.07
Matches are distributed among these distances:
47 3 0.02
48 175 0.97
49 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTGACTCACATATCATG
Found at i:65652749 original size:24 final size:23
Alignment explanation
Indices: 65652691--65652749 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
65652681 GACCTGATGG
*
65652691 ACAGTAAGCTCTATTGAGCTGAA
1 ACAGTAAGCTCTAATGAGCTGAA
* *
65652714 ACGGTAACCTCTAATGAGCTGAAA
1 ACAGTAAGCTCTAATGAGCTG-AA
*
65652738 ATAGTAAGCTCT
1 ACAGTAAGCTCT
65652750 TACGAGTTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
23 18 0.62
24 11 0.38
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (23 bp):
ACAGTAAGCTCTAATGAGCTGAA
Found at i:65655964 original size:39 final size:38
Alignment explanation
Indices: 65655904--65655997 Score: 118
Period size: 39 Copynumber: 2.4 Consensus size: 38
65655894 CGGTACCTTA
* * *
65655904 TGGTGTATAGGGTTGGATGGGTTGA-TTTATCTCCATACT
1 TGGTGTGTAGGGCTGGATGGGTTGATTTTATC-CC-TACG
*
65655943 TGGTGTGTAGGGCTGGGTGGGTTGATTTTATCCCTACG
1 TGGTGTGTAGGGCTGGATGGGTTGATTTTATCCCTACG
*
65655981 TGGTGTGTAGGGGTGGA
1 TGGTGTGTAGGGCTGGA
65655998 CGGAGATGGT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 18 0.38
39 24 0.50
40 6 0.12
ACGTcount: A:0.14, C:0.10, G:0.39, T:0.37
Consensus pattern (38 bp):
TGGTGTGTAGGGCTGGATGGGTTGATTTTATCCCTACG
Found at i:65666225 original size:17 final size:18
Alignment explanation
Indices: 65666195--65666240 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
65666185 ATTTAAATTG
65666195 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
65666213 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
65666229 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
65666241 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:65672701 original size:28 final size:29
Alignment explanation
Indices: 65672648--65672705 Score: 93
Period size: 28 Copynumber: 2.0 Consensus size: 29
65672638 TACAGGGGTT
65672648 TTCACACGGCCTGGCACACGTCCGTGTCC
1 TTCACACGGCCTGGCACACGTCCGTGTCC
65672677 TTCACACGGCCAT-G-ACACGTCCGTGTCC
1 TTCACACGGCC-TGGCACACGTCCGTGTCC
65672705 T
1 T
65672706 AACCCGTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 15 0.54
29 12 0.43
30 1 0.04
ACGTcount: A:0.16, C:0.40, G:0.22, T:0.22
Consensus pattern (29 bp):
TTCACACGGCCTGGCACACGTCCGTGTCC
Found at i:65673446 original size:44 final size:44
Alignment explanation
Indices: 65673383--65673473 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
65673373 TGAGAGGAAG
65673383 TAAGCATAAAGCTTAGTAAGTTGCACATAAATAAATATTCAACA
1 TAAGCATAAAGCTTAGTAAGTTGCACATAAATAAATATTCAACA
65673427 TAAGCATAAAGCTTAGTAAGTTGCACATAAATAAATATTCAACA
1 TAAGCATAAAGCTTAGTAAGTTGCACATAAATAAATATTCAACA
65673471 TAA
1 TAA
65673474 CTTTACCATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.27
Consensus pattern (44 bp):
TAAGCATAAAGCTTAGTAAGTTGCACATAAATAAATATTCAACA
Found at i:65681506 original size:50 final size:50
Alignment explanation
Indices: 65681431--65681564 Score: 223
Period size: 50 Copynumber: 2.7 Consensus size: 50
65681421 ATGGGGTGAG
* * * *
65681431 GTGCCGATGCCATGTCCCATACATGGTCTTACACAAGCTCTTGCATATCT
1 GTGCCGATGTCGTGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCT
*
65681481 GTGCCGATGTCGTGTCCCAGACATGGTCTTATACAAGCTCTAGCATATCT
1 GTGCCGATGTCGTGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCT
65681531 GTGCCGATGTCGTGTCCCAGACATGGTCTTACAC
1 GTGCCGATGTCGTGTCCCAGACATGGTCTTACAC
65681565 TGACACATCT
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 78 1.00
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (50 bp):
GTGCCGATGTCGTGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCT
Found at i:65681618 original size:46 final size:47
Alignment explanation
Indices: 65681533--65681703 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 47
65681523 GCATATCTGT
* *
65681533 GCCGATGTCGTGTCCCAGACATGGTCTTACACTG--ACACATCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACACATCTCA-A
*
65681579 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACACATCTC-AA
* * *
65681625 GCCAATG-CATGTCCCAGACAT-GTCTTACACT-AGCACTCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACACATCTCAA
65681670 TGCCGATGCCATGTCCCA-ACATGGTCTTACACTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTG
65681704 GCTTTCATAA
Statistics
Matches: 110, Mismatches: 7, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
44 11 0.10
45 15 0.14
46 64 0.58
47 20 0.18
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACACATCTCAA
Found at i:65681726 original size:93 final size:92
Alignment explanation
Indices: 65681543--65681756 Score: 240
Period size: 93 Copynumber: 2.3 Consensus size: 92
65681533 GCCGATGTCG
65681543 TGTCCCAGACATGGTCTTACACT-G-ACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTA
1 TGTCCCAGACAT-GTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTA
*
65681606 CACTGACACACATCTCGAGGCCAATGCA
65 CACTGACACACATATCGAGGCCAATGCA
* *
65681634 TGTCCCAGACATGTCTTACACTAGCACTCGTCTCA-ATGCCGATGCCATGTCCCA-ACATGGTCT
1 TGTCCCAGACATGTCTTACACTAGCACACATCTCATA-GCCGATG-CATGTCCCAGACAT-GTCT
* *** * **
65681697 TACACTGGCTTTCATAAT-GTGGCTGATGCA
63 TACACTGACACACAT-ATCGAGGCCAATGCA
* *
65681727 TGTCCTAGACATGTCTTACACTAGCTCACA
1 TGTCCCAGACATGTCTTACACTAGCACACA
65681757 AAATTGACCC
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
90 10 0.10
91 14 0.14
92 19 0.18
93 59 0.57
94 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (92 bp):
TGTCCCAGACATGTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTAC
ACTGACACACATATCGAGGCCAATGCA
Found at i:65682188 original size:192 final size:192
Alignment explanation
Indices: 65681861--65682246 Score: 691
Period size: 192 Copynumber: 2.0 Consensus size: 192
65681851 TTCCCCAATC
* * *
65681861 AAGCAATTTATGCTATAATAATTTCAATAAAATTTAAATACATATATTATTAATGTAGTTTTACT
1 AAGCAATTTATGCTATAAAAATTTCAATAAAATTTAAATACATATATTATTAATATAGTTGTACT
65681926 ATTTACATACAACTTACCTCAGATTACAAAATGTGGCGACTAGTCGATTTAGTCGATTTGCTTGG
66 ATTTACATACAACTTACCTCAGATTACAAAATGTGGCGACTAGTCGATTTAGTCGATTTGCTTGG
*
65681991 CTTTCCCCCGGTCTAGTTCGGATTCAGTATTTCTTGATCTATAATAACAAGTGAACTTATTT
131 CTTTCCCCCGGTCTAGTTCGGATTCAGTATTTCTTGATCTATAATAACAAATGAACTTATTT
*
65682053 AAGCAATTTATGCTATAAAAATTTCAATAAAATTTAAGTACATATATTATTAATATAGTTGTACT
1 AAGCAATTTATGCTATAAAAATTTCAATAAAATTTAAATACATATATTATTAATATAGTTGTACT
*
65682118 ATTTACATACAACTTACCTCGGATTACAAAATGTGGCGACTAGTCGATTTAGTCGATTTGCTTGG
66 ATTTACATACAACTTACCTCAGATTACAAAATGTGGCGACTAGTCGATTTAGTCGATTTGCTTGG
* **
65682183 CTTTCCCTCGGTCTAGTTCGGATTTGGTATTTCTTGATCTATAATAACAAATGAACTTATTT
131 CTTTCCCCCGGTCTAGTTCGGATTCAGTATTTCTTGATCTATAATAACAAATGAACTTATTT
65682245 AA
1 AA
65682247 TCACTAAATA
Statistics
Matches: 185, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
192 185 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (192 bp):
AAGCAATTTATGCTATAAAAATTTCAATAAAATTTAAATACATATATTATTAATATAGTTGTACT
ATTTACATACAACTTACCTCAGATTACAAAATGTGGCGACTAGTCGATTTAGTCGATTTGCTTGG
CTTTCCCCCGGTCTAGTTCGGATTCAGTATTTCTTGATCTATAATAACAAATGAACTTATTT
Found at i:65685260 original size:58 final size:59
Alignment explanation
Indices: 65685164--65685285 Score: 237
Period size: 58 Copynumber: 2.1 Consensus size: 59
65685154 TATGATATTG
65685164 CTTTCGATATTCTTCTTCAATACGAAGATGATTTGCTAAAGCCTTAAGAGACATTTCCT
1 CTTTCGATATTCTTCTTCAATACGAAGATGATTTGCTAAAGCCTTAAGAGACATTTCCT
65685223 CTTTC-ATATTCTTCTTCAATACGAAGATGATTTGCTAAAGCCTTAAGAGACATTTCCT
1 CTTTCGATATTCTTCTTCAATACGAAGATGATTTGCTAAAGCCTTAAGAGACATTTCCT
65685281 CTTTC
1 CTTTC
65685286 TTATGTTTTA
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 58 0.92
59 5 0.08
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.39
Consensus pattern (59 bp):
CTTTCGATATTCTTCTTCAATACGAAGATGATTTGCTAAAGCCTTAAGAGACATTTCCT
Found at i:65698521 original size:26 final size:26
Alignment explanation
Indices: 65698492--65698601 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
65698482 TGTTAAAAAT
65698492 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
65698518 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
65698544 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
65698570 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
65698596 TGATAA
1 TGATAA
65698602 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:65709930 original size:14 final size:14
Alignment explanation
Indices: 65709911--65709938 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
65709901 ACCAGGTAAG
65709911 TTCGGATAACTTAA
1 TTCGGATAACTTAA
65709925 TTCGGATAACTTAA
1 TTCGGATAACTTAA
65709939 AGTAAACCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
TTCGGATAACTTAA
Found at i:65710672 original size:38 final size:38
Alignment explanation
Indices: 65710630--65710702 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
65710620 TTACTCGGTA
65710630 AGTTTACTTTCCGGTTATTCGAGCTTACTAAGCATTCG
1 AGTTTACTTTCCGGTTATTCGAGCTTACTAAGCATTCG
*
65710668 AGTTTACTTTCCGGTTATTCGAGCTTACTAGGCAT
1 AGTTTACTTTCCGGTTATTCGAGCTTACTAAGCAT
65710703 GAAAAATGCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.40
Consensus pattern (38 bp):
AGTTTACTTTCCGGTTATTCGAGCTTACTAAGCATTCG
Found at i:65713328 original size:173 final size:175
Alignment explanation
Indices: 65712983--65713331 Score: 603
Period size: 175 Copynumber: 2.0 Consensus size: 175
65712973 ATCCTCTTTG
* * * * *
65712983 CCCTTGTTGGTCATATATTCCAACAATTAAGTTTCCATGCACATATGCTTTCCACAGCATGTATT
1 CCCTTGTTAGTCATAAATTCCAACAATCAAGTTTCCATGCACATATGCTTTCCACAACATATATT
65713048 CATTTAACATGTACAAATCATCTCTTTATATTACAAGTATAATTTCATAATAGTTCATCTCGAGT
66 CATTTAACATGTACAAATCATCTCTTTATATTACAAGTATAATTTCATAATAGTTCATCTCGAGT
*
65713113 TCAGATTATTTCATGTCAGAACTTTACTCATATCATTCGAAATAT
131 TCAGATTATTTCATGTCAAAACTTTACTCATATCATTCGAAATAT
*
65713158 CCCTTGTTAGTCATAAATTCCAACAATCAAGTTTCCATGCATATATGCTTTCCACAACATATATT
1 CCCTTGTTAGTCATAAATTCCAACAATCAAGTTTCCATGCACATATGCTTTCCACAACATATATT
*
65713223 CATTTAACATGTATAAATCATCTC-TT-TATTACAAGTATAATTTCATAATAGTTCATCTCGAGT
66 CATTTAACATGTACAAATCATCTCTTTATATTACAAGTATAATTTCATAATAGTTCATCTCGAGT
*
65713286 TCAGATTATTTCATGTCAAAACTTTACTCGTATCATTCGAAATAT
131 TCAGATTATTTCATGTCAAAACTTTACTCATATCATTCGAAATAT
65713331 C
1 C
65713332 AAGGTCACAC
Statistics
Matches: 165, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
173 81 0.49
174 2 0.01
175 82 0.50
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (175 bp):
CCCTTGTTAGTCATAAATTCCAACAATCAAGTTTCCATGCACATATGCTTTCCACAACATATATT
CATTTAACATGTACAAATCATCTCTTTATATTACAAGTATAATTTCATAATAGTTCATCTCGAGT
TCAGATTATTTCATGTCAAAACTTTACTCATATCATTCGAAATAT
Found at i:65713780 original size:61 final size:61
Alignment explanation
Indices: 65713704--65713907 Score: 256
Period size: 61 Copynumber: 3.4 Consensus size: 61
65713694 TATATACAAC
* *
65713704 AGGATTACCAGTCCAGGCTAAATCATGTCTTCAATATATATATACTCAATAAAGCTTAGTT
1 AGGATTACCAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAAAGCTTAGTT
* * *
65713765 AGGATTACTAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAGAGCTTGGTT
1 AGGATTACCAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAAAGCTTAGTT
* * * * * *
65713826 AGGATTACCAGTCCAAGTTAAATCCTGTCTCCACTCTATATATA-T---T-GAGCTTAGTC
1 AGGATTACCAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAAAGCTTAGTT
* *
65713882 AGGATTATCAATCCAGGCTAAATCCT
1 AGGATTACCAGTCCAGGCTAAATCCT
65713908 TTTTATGACA
Statistics
Matches: 127, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
56 30 0.24
57 1 0.01
60 1 0.01
61 95 0.75
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (61 bp):
AGGATTACCAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAAAGCTTAGTT
Found at i:65715327 original size:23 final size:23
Alignment explanation
Indices: 65715297--65715347 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
65715287 TTTACATAAA
65715297 CATCAAGTAAGAATAGGTGAGCT
1 CATCAAGTAAGAATAGGTGAGCT
65715320 CATCAAGTAAGAATAGGTGAGCT
1 CATCAAGTAAGAATAGGTGAGCT
65715343 CATCA
1 CATCA
65715348 TGCAATACTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.22
Consensus pattern (23 bp):
CATCAAGTAAGAATAGGTGAGCT
Found at i:65725215 original size:21 final size:21
Alignment explanation
Indices: 65725191--65725242 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
65725181 CAAAAGTATT
* *
65725191 AAATTGATTGCTAAAGGTGTC
1 AAATAGATAGCTAAAGGTGTC
65725212 AAATAGATAGCTAAAGGTGTC
1 AAATAGATAGCTAAAGGTGTC
65725233 AAATAGATAG
1 AAATAGATAG
65725243 AGAATAAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (21 bp):
AAATAGATAGCTAAAGGTGTC
Found at i:65731951 original size:8 final size:9
Alignment explanation
Indices: 65731923--65731952 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
65731913 GATTAATTTA
65731923 CAAAGTTAT
1 CAAAGTTAT
65731932 CAAAGTTAT
1 CAAAGTTAT
65731941 CAAAG-TAT
1 CAAAGTTAT
65731949 CAAA
1 CAAA
65731953 ATTTTTCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (9 bp):
CAAAGTTAT
Found at i:65735037 original size:20 final size:20
Alignment explanation
Indices: 65735014--65735074 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
65735004 CAGTTTATCT
65735014 ACATTACTGGTGACTTGTCC
1 ACATTACTGGTGACTTGTCC
* * * * *
65735034 ACATTTCTAGT-ATTTTATCT
1 ACATTACTGGTGA-CTTGTCC
*
65735054 ACATTACTGGTGGCTTGTCC
1 ACATTACTGGTGACTTGTCC
65735074 A
1 A
65735075 TAAATTGGTT
Statistics
Matches: 28, Mismatches: 11, Indels: 4
0.65 0.26 0.09
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.41
Consensus pattern (20 bp):
ACATTACTGGTGACTTGTCC
Found at i:65736912 original size:13 final size:13
Alignment explanation
Indices: 65736894--65736923 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
65736884 TAAATTCATG
65736894 CAACATGCCAACC
1 CAACATGCCAACC
65736907 CAACATGCCAACC
1 CAACATGCCAACC
65736920 CAAC
1 CAAC
65736924 TCACCTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.47, G:0.07, T:0.07
Consensus pattern (13 bp):
CAACATGCCAACC
Found at i:65746361 original size:39 final size:39
Alignment explanation
Indices: 65746299--65746399 Score: 139
Period size: 39 Copynumber: 2.6 Consensus size: 39
65746289 ATCGTGATTT
* * * *
65746299 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* * *
65746338 GAAGCTCGAAGGCTAACTAAAGCACACAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
65746377 GAAGCCCGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
65746400 TCATCAGAGC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.38, C:0.22, G:0.26, T:0.15
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:65748970 original size:275 final size:275
Alignment explanation
Indices: 65748479--65749028 Score: 1082
Period size: 275 Copynumber: 2.0 Consensus size: 275
65748469 TGGTTGTTTG
65748479 GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
1 GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
* *
65748544 TAGGAGTAGCATCCGCCAACTAATATTTGTAACGAATTTGTGTAATGGGATTTGAAATATGGTGT
66 TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATAGGATTTGAAATATGGTGT
65748609 GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
131 GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
65748674 AGTTATCAACCAACCAAGAATTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
196 AGTTATCAACCAACCAAGAATTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
65748739 AGTCGAAGAATTCTA
261 AGTCGAAGAATTCTA
65748754 GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
1 GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
65748819 TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATAGGATTTGAAATATGGTGT
66 TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATAGGATTTGAAATATGGTGT
65748884 GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
131 GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
65748949 AGTTATCAACCAACCAAGAATTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
196 AGTTATCAACCAACCAAGAATTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
65749014 AGTCGAAGAATTCTA
261 AGTCGAAGAATTCTA
65749029 CAACACCGTT
Statistics
Matches: 273, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
275 273 1.00
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (275 bp):
GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATAGGATTTGAAATATGGTGT
GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
AGTTATCAACCAACCAAGAATTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
AGTCGAAGAATTCTA
Found at i:65751715 original size:30 final size:30
Alignment explanation
Indices: 65751657--65751715 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
65751647 ATTTTCGAGC
* **
65751657 CTAGGGGTAAAACAGTCATTTTGTCAAAGT
1 CTAGGGGCAAAACAGTCATTTTACCAAAGT
**
65751687 CTAGGGGCAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAACAGTCATTTTACCAAAG
65751716 AAGTGAATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (30 bp):
CTAGGGGCAAAACAGTCATTTTACCAAAGT
Found at i:65752162 original size:47 final size:46
Alignment explanation
Indices: 65752052--65752318 Score: 171
Period size: 47 Copynumber: 5.7 Consensus size: 46
65752042 GTTATTGTGA
* *
65752052 GCTAGTGTAAGACATGTCTGGAACATGCATCGGCCA-C-ATTA-TGAGA-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATCGA-GACT-A-AT
* * * * *
65752098 GCCAGTTTAAGGCCATGTCTGGGACATGGCATCCGCATCGAGACAAAT
1 GCTAGTGTAA-GACATGTCTGGGACAT-GCATCGGCATCGAGACTAAT
*
65752146 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCA-CGAGACGTAA-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATCGAGAC-TAAT
* *
65752192 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-TACGAGA-TGAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGACTAAT
* *
65752237 AG-TCAGTGTAAGACTATGTCTGGGACATGGCATCGAC-TTGAGA-T-AT
1 -GCT-AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCATCGAGACTAAT
* *
65752283 GAACCAGTGTAAGGCCATGTCTGGGACATGGCATCG
1 G--CTAGTGTAA-GACATGTCTGGGACAT-GCATCG
65752319 ACACCTTACC
Statistics
Matches: 181, Mismatches: 21, Indels: 37
0.76 0.09 0.15
Matches are distributed among these distances:
44 2 0.01
45 2 0.01
46 69 0.38
47 80 0.44
48 27 0.15
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACTAAT
Found at i:65752199 original size:46 final size:46
Alignment explanation
Indices: 65752050--65752271 Score: 218
Period size: 46 Copynumber: 4.7 Consensus size: 46
65752040 GGGTTATTGT
* * * *
65752050 GAGCTAGTGTAAGACATGTCTGGAACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GACGA
* * *
65752096 GAGCCAGTTTAAGGCCATGTCTGGGACATGGCATCCG-CATCGAGAC-A
1 GAGCCAGTGTAA-GACATGTCTGGGACAT-GCATCGGCCA-CGAGACGA
* * *
65752143 AATGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACGAGACGTA
1 GA-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACG-A
* *
65752191 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGA
* *
65752236 TAGTCAGTGTAAGACTATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCG
65752272 ACTTGAGATA
Statistics
Matches: 147, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
45 1 0.01
46 74 0.50
47 48 0.33
48 23 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGA
Found at i:65752271 original size:94 final size:94
Alignment explanation
Indices: 65752052--65752317 Score: 257
Period size: 94 Copynumber: 2.8 Consensus size: 94
65752042 GTTATTGTGA
* * * * *
65752052 GCTAGTGTAAGACATGTCTGGAACATGCATCGGCCACATTATGAGAGCCAGTTTAAGGCCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAGCCAGTGTAAGGACATGTC
65752117 TGGGACATGGCATCCGCATCGAGACAAAT
66 TGGGACATGGCATCCGCATCGAGACAAAT
*
65752146 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCACGA-GACGTA-AGCCAGTGTAA-GACATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGACG-AGAGCCAGTGTAAGGACATG
* **
65752208 TCTGGGACAT-GCATCGGC-TACGAGA-TGAT
64 TCTGGGACATGGCATCCGCAT-CGAGACAAAT
* *
65752237 AG-TCAGTGTAAGACTATGTCTGGGACATGGCATC-G--ACTTGA-GATATGAACCAGTGTAAGG
1 -GCT-AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCACATGACG--A-GAGCCAGTGTAAGG
*
65752297 CCATGTCTGGGACATGGCATC
59 ACATGTCTGGGACATGGCATC
65752318 GACACCTTAC
Statistics
Matches: 146, Mismatches: 13, Indels: 25
0.79 0.07 0.14
Matches are distributed among these distances:
90 1 0.01
91 10 0.07
92 23 0.16
93 38 0.26
94 67 0.46
95 7 0.05
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGACGAGAGCCAGTGTAAGGACATGTC
TGGGACATGGCATCCGCATCGAGACAAAT
Found at i:65752310 original size:140 final size:140
Alignment explanation
Indices: 65752055--65752318 Score: 322
Period size: 140 Copynumber: 1.9 Consensus size: 140
65752045 ATTGTGAGCT
* * *
65752055 AGTGTAAGACATGTCTGGAACATGCATCGGCCACATTATGAGAGCCAGTTTAAGGCCATGTCTGG
1 AGTGTAAGACATGTCTGGAACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
*
65752120 GACATGGCATCCGCATCGAGACAAATGCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCACG
66 GACATGGCATCCGCATCGAGACAAA-GCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCACG
65752184 AGACGTAAGCC
130 AGACGTAAGCC
* * * * *
65752195 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACTATGTCTG
1 AGTGTAAGACATGTCTGGAACATGCATCGGCCAC-ATGATGAGAGCCAGTGTAAGACCATGTCTG
* * * *
65752259 GGACATGGCAT-CG-ACTTGAGATATGAA-CCAGTGTAAGGCCATGTCTGGGACATGGCATCG
65 GGACATGGCATCCGCA-TCGAGACA--AAGCCAGTGTAA-GACATGTCTAGGACATGGCATCG
65752319 ACACCTTACC
Statistics
Matches: 105, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
138 1 0.01
139 16 0.15
140 79 0.75
141 9 0.09
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGAACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCCGCATCGAGACAAAGCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCACGA
GACGTAAGCC
Found at i:65752319 original size:47 final size:48
Alignment explanation
Indices: 65752099--65752320 Score: 178
Period size: 47 Copynumber: 4.7 Consensus size: 48
65752089 ATTATGAGAG
* *
65752099 CCAGTTTAAGGCCATGTCTGGGACATGGCATCCG-C-ATCGAGA-CA-AA
1 CCAGTGTAAGGCCATGTCTGGGACATGGCAT-CGACTA-CGAGATGATAA
* * * * * *
65752145 TGCTAGTGTAA-GACATGTCTAGGACAT-GCATCGGCCACGAGACG-TAA
1 --CCAGTGTAAGGCCATGTCTGGGACATGGCATCGACTACGAGATGATAA
* * *
65752192 GCCAGTGTAA-GACATGTCTGGGACAT-GCATCGGCTACGAGATGATAG
1 -CCAGTGTAAGGCCATGTCTGGGACATGGCATCGACTACGAGATGATAA
* * * *
65752239 TCAGTGTAAGACTATGTCTGGGACATGGCATCGACT-TGAGAT-ATGAA
1 CCAGTGTAAGGCCATGTCTGGGACATGGCATCGACTACGAGATGAT-AA
65752286 CCAGTGTAAGGCCATGTCTGGGACATGGCATCGAC
1 CCAGTGTAAGGCCATGTCTGGGACATGGCATCGAC
65752321 ACCTTACCTC
Statistics
Matches: 146, Mismatches: 20, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
45 2 0.01
46 59 0.40
47 70 0.48
48 15 0.10
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (48 bp):
CCAGTGTAAGGCCATGTCTGGGACATGGCATCGACTACGAGATGATAA
Found at i:65753537 original size:21 final size:21
Alignment explanation
Indices: 65753480--65753531 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
65753470 AAATGGTCAC
65753480 ACGGGCGTGTTGCCCTTCCAT
1 ACGGGCGTGTTGCCCTTCCAT
65753501 ACGGGCGTGTTGCCCTTCCAT
1 ACGGGCGTGTTGCCCTTCCAT
65753522 ACGGGCGTGT
1 ACGGGCGTGT
65753532 ACCCCTGTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.10, C:0.31, G:0.33, T:0.27
Consensus pattern (21 bp):
ACGGGCGTGTTGCCCTTCCAT
Found at i:65757816 original size:47 final size:45
Alignment explanation
Indices: 65757747--65757921 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 45
65757737 GTTATTGTGA
*
65757747 GCTAGTGTAAGACATGTCTGGGACATGGCATCCACTTCGAGACGAGT
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACTTCGAGACGA-T
* * *
65757794 GCTAGTGTAAGACATGTCTGGGACATGCATAGACCTCGAGACGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTTCGAGACG-AT
* * * * * *
65757840 GCCAGTATAAGACATGTTTGGGACATGCATCGGCTACGAGATGAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACTTCGAGACGAT
*
65757885 AGTTAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 -GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC
65757922 ACTTTACCCC
Statistics
Matches: 106, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
45 1 0.01
46 58 0.55
47 40 0.38
48 7 0.07
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACTTCGAGACGAT
Found at i:65758844 original size:30 final size:30
Alignment explanation
Indices: 65758798--65758854 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
65758788 ATCCCGAGCC
65758798 TAGGAGCAAAAATGTAAATATGCAAAAGTT
1 TAGGAGCAAAAATGTAAATATGCAAAAGTT
* * * *
65758828 TAGGGGCAAAATTGTAATTTTGCAAAA
1 TAGGAGCAAAAATGTAAATATGCAAAA
65758855 ATTTGAGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.46, C:0.07, G:0.21, T:0.26
Consensus pattern (30 bp):
TAGGAGCAAAAATGTAAATATGCAAAAGTT
Found at i:65759326 original size:46 final size:46
Alignment explanation
Indices: 65759276--65759451 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
65759266 TGGTTGAGCA
65759276 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
65759322 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
65759367 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
65759415 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65759452 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:65759432 original size:93 final size:93
Alignment explanation
Indices: 65759273--65759444 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
65759263 GGATGGTTGA
* * *
65759273 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
65759338 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
65759366 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
65759431 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
65759445 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:65763662 original size:38 final size:39
Alignment explanation
Indices: 65763593--65763687 Score: 147
Period size: 38 Copynumber: 2.5 Consensus size: 39
65763583 ACAAATGATT
* *
65763593 TTAAAATTATTAAAATAAGTTTTTTAAAATATAAAATTA
1 TTAAAATTATTATATTAAGTTTTTTAAAATATAAAATTA
* *
65763632 TTAAAATGATTATATTAA-TTTTTTGAAATATAAAATTA
1 TTAAAATTATTATATTAAGTTTTTTAAAATATAAAATTA
65763670 TTAAAATTATTATATTAA
1 TTAAAATTATTATATTAA
65763688 ATTCTATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 36 0.71
39 15 0.29
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (39 bp):
TTAAAATTATTATATTAAGTTTTTTAAAATATAAAATTA
Found at i:65764089 original size:15 final size:15
Alignment explanation
Indices: 65764056--65764089 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
65764046 GTCATAGATG
*
65764056 CTCTTCAAGCCTCAT
1 CTCTTCAAGCCTCAC
*
65764071 CTCTTCAAGCTTCAC
1 CTCTTCAAGCCTCAC
65764086 CTCT
1 CTCT
65764090 AAAACCTCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (15 bp):
CTCTTCAAGCCTCAC
Found at i:65764646 original size:14 final size:15
Alignment explanation
Indices: 65764622--65764663 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
65764612 AAACGTTAAA
65764622 AATATATTTTAATAT
1 AATATATTTTAATAT
65764637 AATA-ATTTTAATAAT
1 AATATATTTTAAT-AT
**
65764652 TTTATATTTTAA
1 AATATATTTTAA
65764664 AAAATAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 8 0.35
15 8 0.35
16 7 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATATATTTTAATAT
Found at i:65764676 original size:29 final size:30
Alignment explanation
Indices: 65764624--65764686 Score: 101
Period size: 29 Copynumber: 2.1 Consensus size: 30
65764614 ACGTTAAAAA
*
65764624 TATATTTTAATATAATAATTTTAATAATTT
1 TATATTTTAATAAAATAATTTTAATAATTT
*
65764654 TATATTTTAA-AAAATAGTTTTAATAATTT
1 TATATTTTAATAAAATAATTTTAATAATTT
65764683 TATA
1 TATA
65764687 ATCATTTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 21 0.68
30 10 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (30 bp):
TATATTTTAATAAAATAATTTTAATAATTT
Found at i:65767901 original size:43 final size:43
Alignment explanation
Indices: 65767839--65768079 Score: 169
Period size: 43 Copynumber: 5.6 Consensus size: 43
65767829 TAAGTGACTT
* * *
65767839 TTCGGTTTATCCGACGATGCATTGTGTGTGCCAGTGTACTTAC
1 TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATACTTAC
** * ** * *
65767882 TTCGGTTTATCTGATGATGCGTTGTGTGTGATAGTATAGTTGC
1 TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATACTTAC
* * * * *
65767925 TTCAGCTTATCCAATGATACATTGTGTGTGCCGGTAAACTTAC
1 TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATACTTAC
* * * * * *
65767968 TTCGATTTATCTAATGATGCATTGTGGGTGTTC-GTATAGTTTC
1 TTCGGTTTATCCAATGATGCATTGTGTGTG-CCAGTATACTTAC
* * * * * ** * * *
65768011 TTTGGTATATTCGATTATGCACCGTGTGTGCCAATATAGTTGC
1 TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATACTTAC
* *
65768054 TTCGGTATATCTAATGATGCATTGTG
1 TTCGGTTTATCCAATGATGCATTGTG
65768080 AGTGTAACAC
Statistics
Matches: 146, Mismatches: 50, Indels: 4
0.73 0.25 0.02
Matches are distributed among these distances:
42 1 0.01
43 144 0.99
44 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.24, T:0.41
Consensus pattern (43 bp):
TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATACTTAC
Found at i:65768708 original size:13 final size:13
Alignment explanation
Indices: 65768690--65768714 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65768680 ATGTCCATTT
65768690 CAGATACAGATAA
1 CAGATACAGATAA
65768703 CAGATACAGATA
1 CAGATACAGATA
65768715 TGCAGATCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (13 bp):
CAGATACAGATAA
Found at i:65771032 original size:79 final size:81
Alignment explanation
Indices: 65770896--65771080 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
65770886 TTGAATGATG
*
65770896 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
65770960 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
65770975 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
65771037 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
65771055 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65771081 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:65771094 original size:40 final size:40
Alignment explanation
Indices: 65770897--65771080 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
65770887 TGAATGATGT
* * * *
65770897 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
65770937 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
65770977 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
65771015 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
65771056 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
65771081 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:65771102 original size:79 final size:79
Alignment explanation
Indices: 65770897--65771113 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
65770887 TGAATGATGT
** * * * **
65770897 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
65770960 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
65770977 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
65771042 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
65771056 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
65771114 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:65778893 original size:79 final size:81
Alignment explanation
Indices: 65778757--65778941 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
65778747 TTGAATGATG
*
65778757 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
65778821 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
65778836 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
65778898 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
65778916 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
65778942 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:65778955 original size:40 final size:40
Alignment explanation
Indices: 65778758--65778941 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
65778748 TGAATGATGT
* * * *
65778758 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
65778798 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
65778838 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
65778876 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
65778917 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
65778942 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:65778963 original size:79 final size:79
Alignment explanation
Indices: 65778758--65778974 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
65778748 TGAATGATGT
** * * * **
65778758 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
65778821 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
65778838 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
65778903 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
65778917 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
65778975 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:65784860 original size:2 final size:2
Alignment explanation
Indices: 65784855--65784879 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
65784845 TATCTATATA
65784855 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
65784880 AAGTGATGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:65785354 original size:29 final size:29
Alignment explanation
Indices: 65785321--65785388 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
65785311 TCGGCCTGGT
*
65785321 ACACGATCGTAT-GCCTTACACAGCTTAAG
1 ACACGACCGTATGGCC-TACACAGCTTAAG
* *
65785350 ACACGACCGTGTGGCCTACACGGCTTAAG
1 ACACGACCGTATGGCCTACACAGCTTAAG
65785379 ACACGACCGT
1 ACACGACCGT
65785389 GAGGCCAGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
29 32 0.91
30 3 0.09
ACGTcount: A:0.28, C:0.31, G:0.22, T:0.19
Consensus pattern (29 bp):
ACACGACCGTATGGCCTACACAGCTTAAG
Found at i:65785389 original size:29 final size:29
Alignment explanation
Indices: 65785337--65785394 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
65785327 TCGTATGCCT
*
65785337 TACACAGCTTAAGACACGACCGTGTGGCC
1 TACACAGCTTAAGACACGACCGTGAGGCC
*
65785366 TACACGGCTTAAGACACGACCGTGAGGCC
1 TACACAGCTTAAGACACGACCGTGAGGCC
65785395 AGTAGTTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.28, C:0.31, G:0.26, T:0.16
Consensus pattern (29 bp):
TACACAGCTTAAGACACGACCGTGAGGCC
Found at i:65789709 original size:95 final size:95
Alignment explanation
Indices: 65789546--65789735 Score: 371
Period size: 95 Copynumber: 2.0 Consensus size: 95
65789536 TTGAGTATCG
*
65789546 GTTACGTATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
1 GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
65789611 TTTTACCATAGTCAAATTAGATGTTACCAT
66 TTTTACCATAGTCAAATTAGATGTTACCAT
65789641 GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
1 GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
65789706 TTTTACCATAGTCAAATTAGATGTTACCAT
66 TTTTACCATAGTCAAATTAGATGTTACCAT
65789736 ATTAATTTGA
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 94 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (95 bp):
GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
TTTTACCATAGTCAAATTAGATGTTACCAT
Found at i:65798857 original size:21 final size:21
Alignment explanation
Indices: 65798816--65798862 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
65798806 TCTCCTCACA
65798816 TTTTTTTCTTTCTTTTGTCTC
1 TTTTTTTCTTTCTTTTGTCTC
65798837 TTTTTATTCTCTTC-TTT-TCTC
1 TTTTT-TTCT-TTCTTTTGTCTC
65798858 TTTTT
1 TTTTT
65798863 CTCTCTATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 14 0.58
22 7 0.29
23 3 0.12
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTTTTTCTTTCTTTTGTCTC
Found at i:65798873 original size:22 final size:21
Alignment explanation
Indices: 65798816--65798874 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
65798806 TCTCCTCACA
65798816 TTTTT-TTCT-TTCTTTTGTCTC
1 TTTTTATTCTATTC-TTT-TCTC
*
65798837 TTTTTATTCTCTTCTTTTCTC
1 TTTTTATTCTATTCTTTTCTC
*
65798858 TTTTTCTCTCTATTCTT
1 TTTTTAT-TCTATTCTT
65798875 GGAAATACTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
21 15 0.45
22 15 0.45
23 3 0.09
ACGTcount: A:0.03, C:0.22, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTTTATTCTATTCTTTTCTC
Found at i:65801907 original size:18 final size:18
Alignment explanation
Indices: 65801884--65801933 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 18
65801874 ATTATCTATC
*
65801884 TTTTCAATTTCTATT-TTG
1 TTTTCAATTT-TATTATTA
65801902 TTTTC-ATTTTATTATTA
1 TTTTCAATTTTATTATTA
*
65801919 TTTT-AAATTTATTAT
1 TTTTCAATTTTATTAT
65801934 AACCAGAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 4 0.14
17 19 0.68
18 5 0.18
ACGTcount: A:0.24, C:0.06, G:0.02, T:0.68
Consensus pattern (18 bp):
TTTTCAATTTTATTATTA
Found at i:65803807 original size:25 final size:25
Alignment explanation
Indices: 65803773--65803820 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
65803763 AGTAGGTACG
*
65803773 TGATGTGTAACAGTTTACCACCACA
1 TGATGTGTAACAATTTACCACCACA
*
65803798 TGATGTGTAACAATTTGCCACCA
1 TGATGTGTAACAATTTACCACCA
65803821 GGTATATGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
TGATGTGTAACAATTTACCACCACA
Found at i:65819504 original size:6 final size:6
Alignment explanation
Indices: 65819471--65819521 Score: 59
Period size: 6 Copynumber: 8.2 Consensus size: 6
65819461 ATCTAATCAT
*
65819471 TTTTTA TTTATT- TATTTTA TAATTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTT-TTA T-TTTTA T-TTTTA TTTTTA TTTTTA TTTTTA TTTTTA
65819521 T
1 T
65819522 AAGATAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
6 29 0.73
7 11 0.28
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:65819519 original size:13 final size:13
Alignment explanation
Indices: 65819471--65819519 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
65819461 ATCTAATCAT
65819471 TTTTTATTTATTTA
1 TTTTTATTT-TTTA
**
65819485 -TTTTATAATTTA
1 TTTTTATTTTTTA
65819497 TTTTTA-TTTTTA
1 TTTTTATTTTTTA
65819509 TTTTTATTTTT
1 TTTTTATTTTT
65819520 ATAAGATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
12 14 0.48
13 15 0.52
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:65819709 original size:21 final size:21
Alignment explanation
Indices: 65819685--65819728 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
65819675 ACTAAATTAT
*
65819685 CATAATTAAAAAATCCTAATC
1 CATAATTAAAAAAACCTAATC
65819706 CATAATTAAAAAAACCTAATC
1 CATAATTAAAAAAACCTAATC
65819727 CA
1 CA
65819729 ACCAAACTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.25
Consensus pattern (21 bp):
CATAATTAAAAAAACCTAATC
Found at i:65823331 original size:74 final size:74
Alignment explanation
Indices: 65823228--65823391 Score: 195
Period size: 74 Copynumber: 2.2 Consensus size: 74
65823218 AAATAATACA
* * * * * *
65823228 AAAAAACCCTAAAATTAATAACTT-AAATGGTAAAAAAGTCACTACATAAATACAAACTTAAATA
1 AAAAACCCCTAAAATT-ATAAATTGGAATGGCAAAAAAATCACTACATAAACACAAACTTAAATA
65823292 TTTAAATTGC
65 TTTAAATTGC
* * * * * * *
65823302 AAAAACTCTTAAAATTATAAATTGGAATGGCAAAAAAATTATTACATAAACACAAAGTTGACTAT
1 AAAAACCCCTAAAATTATAAATTGGAATGGCAAAAAAATCACTACATAAACACAAACTTAAATAT
65823367 TTAAATTGC
66 TTAAATTGC
65823376 AAAAACCCCTAAAATT
1 AAAAACCCCTAAAATT
65823392 GATGGTTTGA
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
73 6 0.08
74 68 0.92
ACGTcount: A:0.52, C:0.13, G:0.07, T:0.27
Consensus pattern (74 bp):
AAAAACCCCTAAAATTATAAATTGGAATGGCAAAAAAATCACTACATAAACACAAACTTAAATAT
TTAAATTGC
Found at i:65823599 original size:33 final size:33
Alignment explanation
Indices: 65823570--65823641 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
65823560 TAGAGTATTG
*
65823570 CGGTGGATACAGGCCGAAAGGAGTGGAGTACTA
1 CGGTGGATACAAGCCGAAAGGAGTGGAGTACTA
*
65823603 CGGTGGATATAAGCCGAAAGGAGTGGAGTACTA
1 CGGTGGATACAAGCCGAAAGGAGTGGAGTACTA
*
65823636 AGGTGG
1 CGGTGG
65823642 TAGTGGGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.31, C:0.12, G:0.40, T:0.17
Consensus pattern (33 bp):
CGGTGGATACAAGCCGAAAGGAGTGGAGTACTA
Found at i:65825779 original size:44 final size:43
Alignment explanation
Indices: 65825726--65825877 Score: 112
Period size: 44 Copynumber: 3.4 Consensus size: 43
65825716 AACCTAATCA
65825726 TAAATTACTAACAAAATAACTGTAAAATTATTTTTTTAAAATTT
1 TAAATTACTAACAAAATAACT-TAAAATTATTTTTTTAAAATTT
* * * * * * **
65825770 TATATTACTAA-AAAATCAC-AAAACACTAATAATTTATAATCTAATCC
1 TAAATTACTAACAAAATAACTTAAA-A-TTAT-TTTTTTAA---AATTT
65825817 TAAATTACTAACAAAATAACTATAAAATTATTTTTTTTAAAA-TT
1 TAAATTACTAACAAAATAACT-TAAAATTA-TTTTTTTAAAATTT
* *
65825861 TACATTACTAAAAAAAT
1 TAAATTACTAACAAAAT
65825878 CACAAAACAT
Statistics
Matches: 80, Mismatches: 18, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
41 3 0.04
42 1 0.01
43 10 0.12
44 31 0.39
45 2 0.03
47 13 0.16
48 15 0.19
49 2 0.03
50 3 0.04
ACGTcount: A:0.51, C:0.11, G:0.01, T:0.38
Consensus pattern (43 bp):
TAAATTACTAACAAAATAACTTAAAATTATTTTTTTAAAATTT
Found at i:65825814 original size:91 final size:90
Alignment explanation
Indices: 65825709--65826076 Score: 430
Period size: 91 Copynumber: 4.0 Consensus size: 90
65825699 AAACGGTAAC
* *
65825709 AATTTATAACCTAATCATAAATTACTAACAAAATAACTGTAAAATTATTTTTTTAAAATTTTATA
1 AATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTAAAA--TTACA
65825774 TTACT-AAAAAATCACAAAACACTAAT
64 TTACTAAAAAAATCACAAAACACTAAT
* *
65825800 AATTTATAATCTAATCCTAAATTACTAACAAAATAACTATAAAATTATTTTTTTTAAAATTTACA
1 AATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTA-TTTTTTTAAAA-TTACA
65825865 TTACTAAAAAAATCACAAAACATTAAACTAAATACT
64 TTACTAAAAAAATCACAAAAC-----ACT--A-A-T
* *
65825901 AACAATTTATAACCTAATCATAAATTACTAACAAAATAACCATAAAATTATTATTTTTTAAATTA
1 ---AATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATT-TTTTTAAAATTA
* *
65825966 CATTACTAAAAAAATTACAAAACACTAAC
62 CATTACTAAAAAAATCACAAAACACTAAT
*
65825995 AATTTATAACCTAAAT-ATAAATTACTAACAAAATAACTAT---A--ATTTTTTT-AAATTATAT
1 AATTTATAACCT-AATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTAAAATTACAT
65826053 TACT-AAAAAATCACAAAACACTAA
65 TACTAAAAAAATCACAAAACACTAA
65826077 ACTAAACACT
Statistics
Matches: 248, Mismatches: 13, Indels: 40
0.82 0.04 0.13
Matches are distributed among these distances:
83 19 0.08
84 12 0.05
85 5 0.02
86 3 0.01
88 1 0.00
91 89 0.36
92 29 0.12
95 1 0.00
96 1 0.00
97 3 0.01
98 3 0.01
99 1 0.00
100 1 0.00
101 1 0.00
103 27 0.11
104 52 0.21
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (90 bp):
AATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTAAAATTACATT
ACTAAAAAAATCACAAAACACTAAT
Found at i:65825964 original size:104 final size:99
Alignment explanation
Indices: 65825790--65825993 Score: 273
Period size: 104 Copynumber: 2.0 Consensus size: 99
65825780 AAAAATCACA
* * *
65825790 AAACACTAATAATTTATAATCTAATCCTAAATTACTAACAAAATAACTATAAAATTATTTTTTTT
1 AAACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAAC-ATAAAA-TATTTTTTTT
*
65825855 AAAATTTACATTACTAAAAAAATCACAAAACATTAAACT
64 -AAA-TTACATTACT-AAAAAATCACAAAACACTAAACT
*
65825894 AAATACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACCATAAAATTATTATTTTT
1 AAACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAA-CATAAAA-TATT-TTTTT
*
65825959 TAAATTACATTACTAAAAAAATTACAAAACACTAA
63 TAAATTACATTACT-AAAAAATCACAAAACACTAA
65825994 CAATTTATAA
Statistics
Matches: 92, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
103 29 0.32
104 56 0.61
105 7 0.08
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (99 bp):
AAACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACATAAAATATTTTTTTTAA
ATTACATTACTAAAAAATCACAAAACACTAAACT
Found at i:65825992 original size:195 final size:187
Alignment explanation
Indices: 65825661--65826125 Score: 641
Period size: 195 Copynumber: 2.4 Consensus size: 187
65825651 TACATTATAA
* * **
65825661 AAAATTTACATTAATAACAAATCACAAAACAATAAACTAAACGGTAACAATTTATAACCTAATCA
1 AAAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCA
** *
65825726 TAAATTACTAACAAAATAACTGTAAAATTATTTTTTTAAAATTTTATATTACTAAAAAATCACAA
66 TAAATTACTAACAAAATAACCATAAAATTATTTTTTTAAAA-TTTACATTACTAAAAAATCACAA
* * *
65825791 AACACTAATAATTTATAATCT-AATCCTAAATTACTAACAAAATAACTATAAAATTATTTTTTTT
130 AACACTAACAATTTATAACCTAAAT-ATAAATTACTAACAAAATAACTAT---A--A-TTTTTTT
* *
65825855 AAAATTTACATTACTAAAAAAATCACAAAACATTAAACTAAATACTAACAATTTATAACCTAATC
1 AAAATTTACATTACT-AAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATC
* *
65825920 ATAAATTACTAACAAAATAACCATAAAATTATTATTTTTTAAA-TTACATTACTAAAAAAATTAC
65 ATAAATTACTAACAAAATAACCATAAAATTATT-TTTTTAAAATTTACATTACT-AAAAAATCAC
65825984 AAAACACTAACAATTTATAACCTAAATATAAATTACTAACAAAATAACTATAATTTTTTT
128 AAAACACTAACAATTTATAACCTAAATATAAATTACTAACAAAATAACTATAATTTTTTT
* * * *
65826044 -AAA-TTATATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTGTAACCTAATTA
1 AAAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCA
65826107 TAAATTACTAACAAAATAA
66 TAAATTACTAACAAAATAA
65826126 TTAAAAAAAT
Statistics
Matches: 248, Mismatches: 19, Indels: 16
0.88 0.07 0.06
Matches are distributed among these distances:
186 65 0.26
187 9 0.04
188 3 0.01
189 7 0.03
190 1 0.00
192 1 0.00
194 23 0.09
195 128 0.52
196 11 0.04
ACGTcount: A:0.53, C:0.14, G:0.01, T:0.32
Consensus pattern (187 bp):
AAAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCA
TAAATTACTAACAAAATAACCATAAAATTATTTTTTTAAAATTTACATTACTAAAAAATCACAAA
ACACTAACAATTTATAACCTAAATATAAATTACTAACAAAATAACTATAATTTTTTT
Found at i:65826101 original size:95 final size:93
Alignment explanation
Indices: 65825860--65826218 Score: 320
Period size: 91 Copynumber: 3.9 Consensus size: 93
65825850 TTTTTAAAAT
* * *
65825860 TTACATTACTAAAAAAATCACAAAACATTAAACTAAATACTAACAATTTATAACCT-AATCATAA
1 TTACATTAAT-AAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAAAT-ATAA
** * * *
65825924 ATTACTAACAAAATAACCATAAAATTATTA
64 ATTACTAACAAAATAATTAAAAAAATAATA
** ** * * * * * *
65825954 TT-TTTTAA-ATTACATTACTAAAAAAAT-TACAAAACACTAACAATTTATAACCTAAATATAAA
1 TTACATTAATAAAAAATCAC-AAAACACTAAACTAAACACTAACAATTTATAACCTAAATATAAA
*****
65826016 TTACTAACAAAATAACTATAATTTTTTTAA-A
65 TTACTAACAAAATAA-T-TAA-AAAAATAATA
* * * *
65826047 TTATATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTGTAACCTAATTATAAAT
1 TTACATTAATAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAAATATAAAT
*
65826112 TACTAACAAAATAATTAAAAAAATAATT
66 TACTAACAAAATAATTAAAAAAATAATA
* * *
65826140 TTACATTAATAAAAAATTACAAAACACTAAACTAAACAC-AACAATTTATAACAT-AATCCTAAA
1 TTACATTAATAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAAAT-ATAAA
65826203 TTACTAA-AAAATAATT
65 TTACTAACAAAATAATT
65826219 TTAAAATAAT
Statistics
Matches: 210, Mismatches: 45, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
91 60 0.29
92 36 0.17
93 46 0.22
94 16 0.08
95 52 0.25
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (93 bp):
TTACATTAATAAAAAATCACAAAACACTAAACTAAACACTAACAATTTATAACCTAAATATAAAT
TACTAACAAAATAATTAAAAAAATAATA
Found at i:65831274 original size:5 final size:5
Alignment explanation
Indices: 65831261--65831314 Score: 76
Period size: 5 Copynumber: 11.0 Consensus size: 5
65831251 TTATTTTATT
*
65831261 TAATAA TAATA TAATA TAATA TAATA TAATA T-A-A TAATA TAATA TAAAA
1 TAAT-A TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
65831310 TAATA
1 TAATA
65831315 ATCTAATAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
3 2 0.05
4 2 0.05
5 36 0.82
6 4 0.09
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
TAATA
Found at i:65831286 original size:18 final size:18
Alignment explanation
Indices: 65831261--65831322 Score: 79
Period size: 18 Copynumber: 3.3 Consensus size: 18
65831251 TTATTTTATT
65831261 TAATAATAATATAATATAATA
1 TAAT-ATAATAT-A-ATAATA
65831282 TAATATAATATAATAATA
1 TAATATAATATAATAATA
* *
65831300 TAATATAAAATAATAATC
1 TAATATAATATAATAATA
65831318 TAATA
1 TAATA
65831323 ATATATTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
18 27 0.69
19 1 0.03
20 7 0.18
21 4 0.10
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATATAATATAATAATA
Found at i:65831290 original size:23 final size:23
Alignment explanation
Indices: 65831262--65831322 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
65831252 TATTTTATTT
65831262 AATAATAATATAATATAATATAA
1 AATAATAATATAATATAATATAA
*
65831285 TATAAT-ATAATAATATAATATAA
1 AATAATAAT-ATAATATAATATAA
*
65831308 AATAATAATCTAATA
1 AATAATAATATAATA
65831323 ATATATTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 2 0.06
23 29 0.88
24 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
AATAATAATATAATATAATATAA
Found at i:65831328 original size:23 final size:23
Alignment explanation
Indices: 65831262--65831328 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 23
65831252 TATTTTATTT
*
65831262 AATAATAATATAAT-ATA-ATAT
1 AATAATAATATAATAATATATAA
65831283 AAT-ATAATATAATAATATAATATAA
1 AATAATAATATAAT-A-AT-ATATAA
*
65831308 AATAATAATCTAATAATATAT
1 AATAATAATATAATAATATAT
65831329 TTTAACACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
20 10 0.26
21 3 0.08
23 6 0.16
24 3 0.08
25 7 0.18
26 9 0.24
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.37
Consensus pattern (23 bp):
AATAATAATATAATAATATATAA
Found at i:65832303 original size:17 final size:17
Alignment explanation
Indices: 65832266--65832303 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
65832256 ACAACTTCTA
*
65832266 TTAAATTATAATTATTT
1 TTAAATTATAATTATTC
65832283 TTAAATGTATAATTA-TC
1 TTAAAT-TATAATTATTC
65832300 TTAA
1 TTAA
65832304 CTTCTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (17 bp):
TTAAATTATAATTATTC
Found at i:65834564 original size:29 final size:29
Alignment explanation
Indices: 65834527--65834585 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
65834517 TGGCCCAAAA
65834527 GAATGTTAATATTTAACAAAATTACATGT
1 GAATGTTAATATTTAACAAAATTACATGT
65834556 GAATGTTAATATTTAACAAAATTACATGT
1 GAATGTTAATATTTAACAAAATTACATGT
65834585 G
1 G
65834586 CAACTATGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (29 bp):
GAATGTTAATATTTAACAAAATTACATGT
Found at i:65839746 original size:35 final size:35
Alignment explanation
Indices: 65839697--65839947 Score: 251
Period size: 35 Copynumber: 7.2 Consensus size: 35
65839687 AGTGCCACGA
* * *
65839697 TTCATAACTCAGTATGGTTAATACCATACCTACAT
1 TTCATAGCTCAGTATGGATAATACCATACCTACGT
* * *
65839732 TTCATAGCTTAGTATGGACAATACCATACCTATGT
1 TTCATAGCTCAGTATGGATAATACCATACCTACGT
* * **
65839767 TTCACAACTTGGTATGGGA-AATACCATACCTACGT
1 TTCATAGCTCAGTAT-GGATAATACCATACCTACGT
*
65839802 ATT-ATAGCTCGGTATGGATAATACCATACCTACGT
1 -TTCATAGCTCAGTATGGATAATACCATACCTACGT
*
65839837 TTCATAGCTCAGTATGGACAATACCATACCTACGT
1 TTCATAGCTCAGTATGGATAATACCATACCTACGT
* * *
65839872 TTCACAACT-TGCTATGGGA-AATACCATACCTACGT
1 TTCATAGCTCAG-TAT-GGATAATACCATACCTACGT
* * *
65839907 ATT-ATAGCTCGGCATGGATAATACCATACCTATGT
1 -TTCATAGCTCAGTATGGATAATACCATACCTACGT
*
65839942 GTCATA
1 TTCATA
65839948 ACTTTGCCAT
Statistics
Matches: 182, Mismatches: 24, Indels: 20
0.81 0.11 0.09
Matches are distributed among these distances:
34 10 0.05
35 161 0.88
36 11 0.06
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (35 bp):
TTCATAGCTCAGTATGGATAATACCATACCTACGT
Found at i:65839890 original size:105 final size:105
Alignment explanation
Indices: 65839708--65839947 Score: 408
Period size: 105 Copynumber: 2.3 Consensus size: 105
65839698 TCATAACTCA
* * * *
65839708 GTATGGTTAATACCATACCTACATTTCATAGCTTAGTATGGACAATACCATACCTATGTTTCACA
1 GTATGGATAATACCATACCTACGTTTCATAGCTCAGTATGGACAATACCATACCTACGTTTCACA
*
65839773 ACTTGGTATGGGAAATACCATACCTACGTATTATAGCTCG
66 ACTTGCTATGGGAAATACCATACCTACGTATTATAGCTCG
65839813 GTATGGATAATACCATACCTACGTTTCATAGCTCAGTATGGACAATACCATACCTACGTTTCACA
1 GTATGGATAATACCATACCTACGTTTCATAGCTCAGTATGGACAATACCATACCTACGTTTCACA
65839878 ACTTGCTATGGGAAATACCATACCTACGTATTATAGCTCG
66 ACTTGCTATGGGAAATACCATACCTACGTATTATAGCTCG
* * *
65839918 GCATGGATAATACCATACCTATGTGTCATA
1 GTATGGATAATACCATACCTACGTTTCATA
65839948 ACTTTGCCAT
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
105 127 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (105 bp):
GTATGGATAATACCATACCTACGTTTCATAGCTCAGTATGGACAATACCATACCTACGTTTCACA
ACTTGCTATGGGAAATACCATACCTACGTATTATAGCTCG
Found at i:65841904 original size:23 final size:23
Alignment explanation
Indices: 65841878--65841946 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
65841868 TAACCTTTCA
65841878 AATAAATAACCCACTTCGATTAG
1 AATAAATAACCCACTTCGATTAG
* * ** *
65841901 AATAACTGAGTC-CTT---TCA-
1 AATAAATAACCCACTTCGATTAG
65841919 AATAAATAACCCACTTCGATTAG
1 AATAAATAACCCACTTCGATTAG
65841942 AATAA
1 AATAA
65841947 CTGAGTCGAT
Statistics
Matches: 31, Mismatches: 10, Indels: 10
0.61 0.20 0.20
Matches are distributed among these distances:
18 8 0.26
19 5 0.16
22 5 0.16
23 13 0.42
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (23 bp):
AATAAATAACCCACTTCGATTAG
Found at i:65841906 original size:19 final size:19
Alignment explanation
Indices: 65841882--65841947 Score: 53
Period size: 19 Copynumber: 3.3 Consensus size: 19
65841872 CTTTCAAATA
65841882 AATAACCCACTTCGATTAG
1 AATAACCCACTTCGATTAG
** * *
65841901 AATAACTGAGTCCTTTCAAATA-
1 AATAACCCA---C-TTCGATTAG
65841923 AATAACCCACTTCGATTAG
1 AATAACCCACTTCGATTAG
65841942 AATAAC
1 AATAAC
65841948 TGAGTCGATT
Statistics
Matches: 34, Mismatches: 8, Indels: 10
0.65 0.15 0.19
Matches are distributed among these distances:
18 6 0.18
19 14 0.41
22 8 0.24
23 6 0.18
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (19 bp):
AATAACCCACTTCGATTAG
Found at i:65841917 original size:41 final size:41
Alignment explanation
Indices: 65841871--65841953 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
65841861 ACTCAATTAA
65841871 CCTTTCAAATAAATAACCCACTTCGATTAGAATAACTGAGT
1 CCTTTCAAATAAATAACCCACTTCGATTAGAATAACTGAGT
65841912 CCTTTCAAATAAATAACCCACTTCGATTAGAATAACTGAGT
1 CCTTTCAAATAAATAACCCACTTCGATTAGAATAACTGAGT
65841953 C
1 C
65841954 GATTTTATCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (41 bp):
CCTTTCAAATAAATAACCCACTTCGATTAGAATAACTGAGT
Found at i:65842993 original size:13 final size:13
Alignment explanation
Indices: 65842975--65843000 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
65842965 GATAAAAGAA
65842975 CATATAGAATACC
1 CATATAGAATACC
65842988 CATATAGAATACC
1 CATATAGAATACC
65843001 TAGAAGAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (13 bp):
CATATAGAATACC
Found at i:65844990 original size:35 final size:35
Alignment explanation
Indices: 65844951--65845215 Score: 268
Period size: 35 Copynumber: 7.6 Consensus size: 35
65844941 ATATGGTTAG
**
65844951 TACCATACCTAAATTTCATAGCTCAGTATGGACAA
1 TACCATACCTACGTTTCATAGCTCAGTATGGACAA
* * * *
65844986 TACCATACCTACATTTCACAACTCGGTATGGGA-AA
1 TACCATACCTACGTTTCATAGCTCAGTAT-GGACAA
* * *
65845021 TACCATACCTACGTATT-ATAGTTCGGTATGGATAA
1 TACCATACCTACGT-TTCATAGCTCAGTATGGACAA
* *
65845056 TATCATACCTACGTTTCATAGCTCAGTATGAACAA
1 TACCATACCTACGTTTCATAGCTCAGTATGGACAA
* * * *
65845091 TACCATACCTACATTTCACAACTCGGTATGGGA-AA
1 TACCATACCTACGTTTCATAGCTCAGTAT-GGACAA
* *
65845126 TACCATACCTACGTATT-ATAGCTCAATATGGATAA
1 TACCATACCTACGT-TTCATAGCTCAGTATGGACAA
* * *
65845161 TATCATACCTACGTGTCATAGCTCAATATGGACAA
1 TACCATACCTACGTTTCATAGCTCAGTATGGACAA
* *
65845196 TACTATACCTACGTGTCATA
1 TACCATACCTACGTTTCATA
65845216 ACTTTGCCAT
Statistics
Matches: 193, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
34 9 0.05
35 175 0.91
36 9 0.05
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (35 bp):
TACCATACCTACGTTTCATAGCTCAGTATGGACAA
Found at i:65845236 original size:105 final size:105
Alignment explanation
Indices: 65844937--65845207 Score: 434
Period size: 105 Copynumber: 2.6 Consensus size: 105
65844927 CGATTCACAA
* * * **
65844937 CTCAATATGGTTAGTACCATACCTAAATTTCATAGCTCAGTATGGACAATACCATACCTACATTT
1 CTCAATATGGATAATATCATACCTACGTTTCATAGCTCAGTATGGACAATACCATACCTACATTT
65845002 CACAACTCGGTATGGGAAATACCATACCTACGTATTATAG
66 CACAACTCGGTATGGGAAATACCATACCTACGTATTATAG
* ** *
65845042 TTCGGTATGGATAATATCATACCTACGTTTCATAGCTCAGTATGAACAATACCATACCTACATTT
1 CTCAATATGGATAATATCATACCTACGTTTCATAGCTCAGTATGGACAATACCATACCTACATTT
65845107 CACAACTCGGTATGGGAAATACCATACCTACGTATTATAG
66 CACAACTCGGTATGGGAAATACCATACCTACGTATTATAG
* * *
65845147 CTCAATATGGATAATATCATACCTACGTGTCATAGCTCAATATGGACAATACTATACCTAC
1 CTCAATATGGATAATATCATACCTACGTTTCATAGCTCAGTATGGACAATACCATACCTAC
65845208 GTGTCATAAC
Statistics
Matches: 150, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
105 150 1.00
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (105 bp):
CTCAATATGGATAATATCATACCTACGTTTCATAGCTCAGTATGGACAATACCATACCTACATTT
CACAACTCGGTATGGGAAATACCATACCTACGTATTATAG
Done.