Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 205 of 325
Found at i:66401567 original size:6 final size:6
Alignment explanation
Indices: 66401548--66401771 Score: 113
Period size: 6 Copynumber: 36.3 Consensus size: 6
66401538 TTGCGTTCAC
* * *
66401548 ATTCTG ATTTTG ATTCTG ATTCTG -TTACCTG ATACAG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * * *
66401596 ATCACCTA ATTTTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * * *
66401647 ATTCTG ATTTTG -TCACCTA ACTCTG ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
66401696 -TTACTTG ATACTG ATTCTG ATTCT- -TTCACCTA ATTTTG ATTTTG ATTCTG
1 ATT-C-TG ATTCTG ATTCTG ATTCTG ATT---CTG ATTCTG ATTCTG ATTCTG
* *
66401746 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
66401772 AATGTTTCTT
Statistics
Matches: 166, Mismatches: 30, Indels: 44
0.69 0.12 0.18
Matches are distributed among these distances:
4 2 0.01
5 10 0.06
6 132 0.80
7 15 0.09
8 5 0.03
9 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:66401579 original size:25 final size:24
Alignment explanation
Indices: 66401548--66401771 Score: 122
Period size: 25 Copynumber: 9.1 Consensus size: 24
66401538 TTGCGTTCAC
66401548 ATTCTGATTTTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTGATTCTG
***
66401572 -TTACCTGATACAGATTCTGATTCT-
1 ATT--CTGATTTTGATTCTGATTCTG
* *
66401596 ATCACCTAATTTTGATTCTGATTCTG
1 AT--TCTGATTTTGATTCTGATTCTG
* *
66401622 ATTCTGATTCTG-TTACCTGATACTG
1 ATTCTGATTTTGATT--CTGATTCTG
* * *
66401647 ATTCTGATTTTG-TCACCTAACTCTG
1 ATTCTGATTTTGAT--TCTGATTCTG
*
66401672 ATTCTGATTCTGATTCTGATTCTG
1 ATTCTGATTTTGATTCTGATTCTG
**
66401696 -TTACTTGATACTGATTCTGATTCT-
1 ATT-C-TGATTTTGATTCTGATTCTG
* *
66401720 -TTCACCTAATTTTGATTTTGATTCTG
1 ATT---CTGATTTTGATTCTGATTCTG
*
66401746 ATTCTCATTTTGATTCT-AGTTCTG
1 ATTCTGATTTTGATTCTGA-TTCTG
66401770 AT
1 AT
66401772 AATGTTTCTT
Statistics
Matches: 153, Mismatches: 29, Indels: 36
0.70 0.13 0.17
Matches are distributed among these distances:
23 7 0.05
24 36 0.24
25 104 0.68
26 4 0.03
27 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (24 bp):
ATTCTGATTTTGATTCTGATTCTG
Found at i:66401650 original size:62 final size:62
Alignment explanation
Indices: 66401548--66401750 Score: 325
Period size: 62 Copynumber: 3.3 Consensus size: 62
66401538 TTGCGTTCAC
* *
66401548 ATTCTGATTTTGATTCTGATTCTGTTACCTGATACAGATTCTGATTCTATCACCTAATTTTG
1 ATTCTGATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATCACCTAATTTTG
* * * *
66401610 ATTCTGATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTTTGTCACCTAACTCTG
1 ATTCTGATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATCACCTAATTTTG
* *
66401672 ATTCTGATTCTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTTTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATCACCTAATTTTG
*
66401734 ATTTTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
66401751 CATTTTGATT
Statistics
Matches: 129, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 129 1.00
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.48
Consensus pattern (62 bp):
ATTCTGATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTATCACCTAATTTTG
Found at i:66409581 original size:42 final size:41
Alignment explanation
Indices: 66409518--66409643 Score: 119
Period size: 42 Copynumber: 3.0 Consensus size: 41
66409508 GTAATCAAAT
* *
66409518 ATCAATGCCACTATCCCAAACAGGGTCTTACACAAAATCAA
1 ATCAATGCCAATGTCCCAAACAGGGTCTTACACAAAATCAA
* * * *
66409559 ATGCGATGCCGATGTCCCAAACATGGTCTTACATGAAAATCTCAA
1 AT-CAATGCCAATGTCCCAAACAGGGTCTTACA-CAAAA--TCAA
* * *
66409604 ATCAATGCCAATGTCCCAGA-TGTGGTCTTACACGAAATCA
1 ATCAATGCCAATGTCCCAAACAG-GGTCTTACACAAAATCA
66409644 CATATCAAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 10
0.74 0.14 0.11
Matches are distributed among these distances:
41 5 0.07
42 25 0.37
43 7 0.10
44 24 0.36
45 6 0.09
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (41 bp):
ATCAATGCCAATGTCCCAAACAGGGTCTTACACAAAATCAA
Found at i:66409630 original size:44 final size:45
Alignment explanation
Indices: 66409520--66409640 Score: 133
Period size: 44 Copynumber: 2.8 Consensus size: 45
66409510 AATCAAATAT
* * *
66409520 CAATGCCACTATCCCAAACAGGGTCTTACAC-AAAA--TCAAATG
1 CAATGCCAATGTCCCAAACATGGTCTTACACGAAAATCTCAAATG
* * *
66409562 CGATGCCGATGTCCCAAACATGGTCTTACATGAAAATCTCAAAT-
1 CAATGCCAATGTCCCAAACATGGTCTTACACGAAAATCTCAAATG
* **
66409606 CAATGCCAATGTCCCAGATGTGGTCTTACACGAAA
1 CAATGCCAATGTCCCAAACATGGTCTTACACGAAA
66409641 TCACATATCA
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 25 0.39
43 4 0.06
44 29 0.45
45 6 0.09
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (45 bp):
CAATGCCAATGTCCCAAACATGGTCTTACACGAAAATCTCAAATG
Found at i:66413312 original size:39 final size:39
Alignment explanation
Indices: 66413258--66413332 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
66413248 TTTAAGTCTC
66413258 CTTCACCGAAACTCCATAGTTTCAACTTCTCCAAGCAGA
1 CTTCACCGAAACTCCATAGTTTCAACTTCTCCAAGCAGA
* *
66413297 CTTCACTGAAACTCCATAGTTTCAACTTCTCTAAGC
1 CTTCACCGAAACTCCATAGTTTCAACTTCTCCAAGC
66413333 TTCGGTCTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.29
Consensus pattern (39 bp):
CTTCACCGAAACTCCATAGTTTCAACTTCTCCAAGCAGA
Found at i:66417473 original size:29 final size:29
Alignment explanation
Indices: 66417430--66417567 Score: 206
Period size: 29 Copynumber: 4.8 Consensus size: 29
66417420 CTTGGAATTA
**
66417430 ATTTGGGCCGGATGGGCCATATGAACGTG
1 ATTTGGGCCTAATGGGCCATATGAACGTG
66417459 ATTTGGGCCTAATGGGCCATATGAACGTG
1 ATTTGGGCCTAATGGGCCATATGAACGTG
66417488 ATTTGGGCCTAATGGGCCATATGAACGTG
1 ATTTGGGCCTAATGGGCCATATGAACGTG
* * *
66417517 ATTTGGGCCTAATAGGCCATATGAATGAG
1 ATTTGGGCCTAATGGGCCATATGAACGTG
* *
66417546 A-TTGGGCCTAGTGGGCAATATG
1 ATTTGGGCCTAATGGGCCATATG
66417568 CATGTATGTA
Statistics
Matches: 101, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 18 0.18
29 83 0.82
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.27
Consensus pattern (29 bp):
ATTTGGGCCTAATGGGCCATATGAACGTG
Found at i:66418262 original size:11 final size:11
Alignment explanation
Indices: 66418246--66418271 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
66418236 ATTGTATGTA
66418246 TGATATTATTG
1 TGATATTATTG
66418257 TGATATTATTG
1 TGATATTATTG
66418268 TGAT
1 TGAT
66418272 GTGGGCTTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (11 bp):
TGATATTATTG
Found at i:66422076 original size:29 final size:30
Alignment explanation
Indices: 66422044--66422106 Score: 92
Period size: 29 Copynumber: 2.1 Consensus size: 30
66422034 CACGGGCCGC
*
66422044 CACATGGTTGTGTGCCACACACG-CCACCT
1 CACATGGTCGTGTGCCACACACGACCACCT
* *
66422073 CACATGGTCGTGTGCCATACACGACCACTT
1 CACATGGTCGTGTGCCACACACGACCACCT
66422103 CACA
1 CACA
66422107 CGACCATGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 21 0.70
30 9 0.30
ACGTcount: A:0.24, C:0.37, G:0.19, T:0.21
Consensus pattern (30 bp):
CACATGGTCGTGTGCCACACACGACCACCT
Found at i:66423403 original size:43 final size:43
Alignment explanation
Indices: 66423356--66423443 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
66423346 TCTTAGTGAT
66423356 TTTTATTATTTATGCCTCATTACCTTAAGCACTGATGGTTGAA
1 TTTTATTATTTATGCCTCATTACCTTAAGCACTGATGGTTGAA
*
66423399 TTTTATTATTTATGTCTCATTACCTTAAGCACTGATGGTTGAA
1 TTTTATTATTTATGCCTCATTACCTTAAGCACTGATGGTTGAA
66423442 TT
1 TT
66423444 ACTTGATTAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.25, C:0.15, G:0.14, T:0.47
Consensus pattern (43 bp):
TTTTATTATTTATGCCTCATTACCTTAAGCACTGATGGTTGAA
Found at i:66424041 original size:24 final size:24
Alignment explanation
Indices: 66423988--66424047 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 24
66423978 TTTTTTTTGA
* *
66423988 AAAATCTTAAAAATTAAATAAATT
1 AAAATTTTAAAAAATAAATAAATT
*
66424012 -ATATTTTAAAAAATAAAGT-AATT
1 AAAATTTTAAAAAATAAA-TAAATT
66424035 AAAATTTATAAAA
1 AAAATTT-TAAAA
66424048 GGTTAATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
23 18 0.62
24 6 0.21
25 5 0.17
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (24 bp):
AAAATTTTAAAAAATAAATAAATT
Found at i:66427387 original size:163 final size:163
Alignment explanation
Indices: 66427117--66427432 Score: 490
Period size: 163 Copynumber: 1.9 Consensus size: 163
66427107 CAAAACCAAA
* * * * *
66427117 TCATTAGATGGATTTTATTGCTCCAAGAATTCAACATCGAGATTCGAGACAAGAAGGGATGCAGA
1 TCATTAGATGGAATTTACTACTCCAAGAATTCAACATCAAGATTCGAGACAAGAAAGGATGCAGA
*
66427182 AACTTAGTGGCTAACCACTTGAGTAGGTTAAAAACACCTTGTGATGACACTCCTATAAAGGATGA
66 AACTTAGTGGCTAACCACATGAGTAGGTTAAAAACACCTTGTGATGACACTCCTATAAAGGATGA
66427247 GTTTCCTGATGAGGGCCTATTTTTGACCAAGAC
131 GTTTCCTGATGAGGGCCTATTTTTGACCAAGAC
* * * *
66427280 TCATTAGATGGAATTTACTACTTCAAGAATTCAACATCAAGCTTCGAGATACGAAAGGATGC-GA
1 TCATTAGATGGAATTTACTACTCCAAGAATTCAACATCAAGATTCGAGACAAGAAAGGATGCAG-
* * *
66427344 AAACTTGGTGGTTGACCACATGAGTAGGTTAAAAACACCTTGTGATGACACTCCTATAAAGGATG
65 AAACTTAGTGGCTAACCACATGAGTAGGTTAAAAACACCTTGTGATGACACTCCTATAAAGGATG
*
66427409 AGTTTCCTGATGATGGCCTATTTT
130 AGTTTCCTGATGAGGGCCTATTTT
66427433 CAGCCAAAGT
Statistics
Matches: 138, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
162 1 0.01
163 137 0.99
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (163 bp):
TCATTAGATGGAATTTACTACTCCAAGAATTCAACATCAAGATTCGAGACAAGAAAGGATGCAGA
AACTTAGTGGCTAACCACATGAGTAGGTTAAAAACACCTTGTGATGACACTCCTATAAAGGATGA
GTTTCCTGATGAGGGCCTATTTTTGACCAAGAC
Found at i:66428823 original size:18 final size:19
Alignment explanation
Indices: 66428800--66428839 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
66428790 GGCAACCTAA
*
66428800 TTTTTATTTATT-TTTTAT
1 TTTTTATTTATTACTTTAT
66428818 TTTTTATTTATTACTTTAT
1 TTTTTATTTATTACTTTAT
66428837 TTT
1 TTT
66428840 ATTTTCATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTATTTATTACTTTAT
Found at i:66431568 original size:105 final size:104
Alignment explanation
Indices: 66431378--66431569 Score: 228
Period size: 105 Copynumber: 1.8 Consensus size: 104
66431368 AAAATTAAGA
* * *
66431378 GTGTGTTGGGCTGAGTAACCGTGGTAGGGTGCTAGGGTTGTCATTCCACTTCGCATCAAAAGGGC
1 GTGTGTTGGGCTGAGTAACCGAGGTAGGGTGCTAGGGTTGTCATCCCACTTCACATCAAAAGGGC
*
66431443 CAAAATGCTCTTAACCAAAAATAGTATAATAATAAAATAG
66 CAAAAT-CTCTTAACAAAAAATAGTATAATAATAAAATAG
* ** *
66431483 GTGTGTTGGGTTGAGTAATTGAGGT-GAGGTGCCT-GGGTTGTCATCCCTCTTCACATCAAAAGG
1 GTGTGTTGGGCTGAGTAACCGAGGTAG-GGTG-CTAGGGTTGTCATCCCACTTCACATCAAAAGG
* *
66431546 GTCAATACAT-TCTTAAGAAAAAAT
64 GCCAA-A-ATCTCTTAACAAAAAAT
66431570 GCAAAAAAAA
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
104 1 0.01
105 67 0.92
106 3 0.04
107 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (104 bp):
GTGTGTTGGGCTGAGTAACCGAGGTAGGGTGCTAGGGTTGTCATCCCACTTCACATCAAAAGGGC
CAAAATCTCTTAACAAAAAATAGTATAATAATAAAATAG
Found at i:66439152 original size:23 final size:23
Alignment explanation
Indices: 66439062--66439179 Score: 107
Period size: 23 Copynumber: 5.0 Consensus size: 23
66439052 GCGACTCACC
66439062 TCAGCTCGCAT-GAGCTTACTGCTAT
1 TCAGCTCG-ATAGAGCTTACTG-T-T
66439087 ATCAGCTCG-TAAGAGCTTACTGTT
1 -TCAGCTCGAT-AGAGCTTACTGTT
*
66439111 CTCAGCTC-ATATGAACTTACTGTT
1 -TCAGCTCGATA-GAGCTTACTGTT
* * *
66439135 TTAGCTCGTTAGAGCTTACCGTT
1 TCAGCTCGATAGAGCTTACTGTT
*
66439158 TCAGCTCAATAGAGCTTACTGT
1 TCAGCTCGATAGAGCTTACTGT
66439180 CCATCAGCTC
Statistics
Matches: 77, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
23 35 0.45
24 23 0.30
25 1 0.01
26 18 0.23
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.35
Consensus pattern (23 bp):
TCAGCTCGATAGAGCTTACTGTT
Found at i:66439152 original size:47 final size:46
Alignment explanation
Indices: 66439090--66439179 Score: 128
Period size: 47 Copynumber: 1.9 Consensus size: 46
66439080 CTGCTATATC
*
66439090 AGCTCGTAAGAGCTTACTGTTCTCAGCTC-ATATGAACTTACTGTTTT
1 AGCTCGTAAGAGCTTACCGTT-TCAGCTCAATA-GAACTTACTGTTTT
* *
66439137 AGCTCGTTAGAGCTTACCGTTTCAGCTCAATAGAGCTTACTGT
1 AGCTCGTAAGAGCTTACCGTTTCAGCTCAATAGAACTTACTGT
66439180 CCATCAGCTC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
46 17 0.44
47 22 0.56
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (46 bp):
AGCTCGTAAGAGCTTACCGTTTCAGCTCAATAGAACTTACTGTTTT
Found at i:66442874 original size:10 final size:10
Alignment explanation
Indices: 66442856--66442896 Score: 66
Period size: 10 Copynumber: 4.2 Consensus size: 10
66442846 GTAAAAGCCT
66442856 AAAATTTAAA
1 AAAATTTAAA
*
66442866 AAAAATTAAA
1 AAAATTTAAA
66442876 AAAATTT-AA
1 AAAATTTAAA
66442885 AAAATTTAAA
1 AAAATTTAAA
66442895 AA
1 AA
66442897 TATATAGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 9 0.32
10 19 0.68
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:66442931 original size:18 final size:18
Alignment explanation
Indices: 66442908--66442945 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
66442898 ATATAGTTTA
*
66442908 TATTCGATTTATTCAAAT
1 TATTCGAGTTATTCAAAT
*
66442926 TATTCGAGTTATTCGAAT
1 TATTCGAGTTATTCAAAT
66442944 TA
1 TA
66442946 GAAAATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.47
Consensus pattern (18 bp):
TATTCGAGTTATTCAAAT
Found at i:66453842 original size:5 final size:5
Alignment explanation
Indices: 66453832--66453872 Score: 50
Period size: 5 Copynumber: 8.6 Consensus size: 5
66453822 AATGGTTAAA
**
66453832 TTTCT TTTC- TTT-T TTTAA TTTCT TTTCT TTTCT TTTCT TTT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTT
66453873 GAAATGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
4 6 0.19
5 25 0.81
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTCT
Found at i:66454610 original size:21 final size:20
Alignment explanation
Indices: 66454568--66454640 Score: 62
Period size: 20 Copynumber: 3.7 Consensus size: 20
66454558 AATCATACTA
* * *
66454568 ATTTTTATATTTTTTGTGAT
1 ATTTTTATAATTTTGGTAAT
66454588 ATTTTTATAATTTTGGTTAAT
1 ATTTTTATAATTTTGG-TAAT
*
66454609 A-TTTTATAAATTT--TAATT
1 ATTTTTATAATTTTGGTAA-T
*
66454627 AATTTTATAATTTT
1 ATTTTTATAATTTT
66454641 TATGCTTTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
17 3 0.07
18 2 0.04
19 11 0.24
20 25 0.56
21 4 0.09
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.64
Consensus pattern (20 bp):
ATTTTTATAATTTTGGTAAT
Found at i:66455782 original size:27 final size:27
Alignment explanation
Indices: 66455728--66455798 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
66455718 GTGCCATCAG
* * *
66455728 GGCATTTCTTTCAAAGTTCACCACGAA
1 GGCATCTCTTTCATATTTCACCACGAA
* *
66455755 GG-ATACTCTTTCATATTTCTCCATGAA
1 GGCAT-CTCTTTCATATTTCACCACGAA
*
66455782 GGCATTTCTTTCATATT
1 GGCATCTCTTTCATATT
66455799 GTGCCAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
26 2 0.06
27 32 0.89
28 2 0.06
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.39
Consensus pattern (27 bp):
GGCATCTCTTTCATATTTCACCACGAA
Found at i:66455810 original size:27 final size:27
Alignment explanation
Indices: 66455762--66455873 Score: 98
Period size: 27 Copynumber: 4.1 Consensus size: 27
66455752 GAAGGATACT
* * ** * *
66455762 CTTTCATATTTCTCCATGAAGGCATTT
1 CTTTCATATTGCGCCAAAAAGGCGTTC
*
66455789 CTTTCATATTGTGCCAAAAAGGCGTTC
1 CTTTCATATTGCGCCAAAAAGGCGTTC
* * *
66455816 CTTTCGTATTGCGTCACAAAGGCGTTC
1 CTTTCATATTGCGCCAAAAAGGCGTTC
* * * *
66455843 CTTTCATATTGCACCACAAAGACATTC
1 CTTTCATATTGCGCCAAAAAGGCGTTC
66455870 CTTT
1 CTTT
66455874 AAGGTTCGTC
Statistics
Matches: 69, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (27 bp):
CTTTCATATTGCGCCAAAAAGGCGTTC
Found at i:66456864 original size:31 final size:31
Alignment explanation
Indices: 66456820--66456928 Score: 121
Period size: 31 Copynumber: 3.5 Consensus size: 31
66456810 TCAAAACTAG
* *
66456820 AATCAGAATCAGAATCAGAATTAGGTGAA-AA
1 AATCAAAATCAGAATCAGAATCAGGT-AACAA
* * *
66456851 AATTAAAATCAGAATCAGTATCAGGTAACAG
1 AATCAAAATCAGAATCAGAATCAGGTAACAA
* *
66456882 AATCAAAATCAGAATCAGTATCAGGTAACAG
1 AATCAAAATCAGAATCAGAATCAGGTAACAA
*
66456913 AATAAAAAATCAGAAT
1 AAT-CAAAATCAGAAT
66456929 GTAAATGCAA
Statistics
Matches: 69, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
30 2 0.03
31 56 0.81
32 11 0.16
ACGTcount: A:0.52, C:0.12, G:0.16, T:0.20
Consensus pattern (31 bp):
AATCAAAATCAGAATCAGAATCAGGTAACAA
Found at i:66457108 original size:27 final size:26
Alignment explanation
Indices: 66457065--66457166 Score: 123
Period size: 27 Copynumber: 3.8 Consensus size: 26
66457055 GCTCAGTTAT
* *
66457065 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
66457092 CAGATATTGTGGTAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
66457118 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
66457146 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
66457167 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:66457353 original size:22 final size:21
Alignment explanation
Indices: 66457325--66457389 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
66457315 GCAAATACGT
66457325 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
66457347 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
66457369 TTGACACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
66457390 AAGGCTTTAG
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:66457865 original size:27 final size:27
Alignment explanation
Indices: 66457834--66458035 Score: 91
Period size: 27 Copynumber: 7.2 Consensus size: 27
66457824 TACCCCACAA
* *
66457834 GGTATCTCAATAATTCCACCTTACATG
1 GGTATCTCAATAATTCCACCCTACAGG
* * * *
66457861 GGTATTTTAGTAATTCTACCCTACAGG
1 GGTATCTCAATAATTCCACCCTACAGG
* *
66457888 GGTATTTCGCTATTGCGATAATTCTACCCTACAGG
1 GGTA--T--C---T-CAATAATTCCACCCTACAGG
* ** * * *
66457923 GGTATTTCGGTAATTCTACCTTATAGG
1 GGTATCTCAATAATTCCACCCTACAGG
* * * * *
66457950 GGCATTTCAGTAATTCTACCCTATAGG
1 GGTATCTCAATAATTCCACCCTACAGG
* * *
66457977 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATCTCAATAATTCCACCCTACAGG
** *
66458004 GGTAT-TCTGGTAATTCTACCCTACAGG
1 GGTATCTC-AATAATTCCACCCTACAGG
66458031 GGTAT
1 GGTAT
66458036 TTCGATATTT
Statistics
Matches: 146, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
26 2 0.01
27 119 0.82
28 1 0.01
29 1 0.01
33 1 0.01
34 1 0.01
35 21 0.14
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTATCTCAATAATTCCACCCTACAGG
Found at i:66458036 original size:27 final size:27
Alignment explanation
Indices: 66457906--66458038 Score: 196
Period size: 27 Copynumber: 4.9 Consensus size: 27
66457896 GCTATTGCGA
*
66457906 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* * *
66457933 TAATTCTACCTTATAGGGGCATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
66457960 TAATTCTACCCTATAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
66457987 TAATTCTACCCTACAGGGGTA-TTCTGG
1 TAATTCTACCCTACAGGGGTATTTC-AG
66458014 TAATTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAGGGGTATTTC
66458039 GATATTTTAC
Statistics
Matches: 96, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
26 3 0.03
27 90 0.94
28 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:66458089 original size:27 final size:27
Alignment explanation
Indices: 66458000--66458207 Score: 192
Period size: 27 Copynumber: 7.8 Consensus size: 27
66457990 TTCTACCCTA
* * **
66458000 CAGGGGTATTCTGGTAATTCTAC-CCT
1 CAGGGGTATTTTGGTAATTTTACAAAT
* *
66458026 ACAGGGGTATTTCGAT-ATTTTACAAAT
1 -CAGGGGTATTTTGGTAATTTTACAAAT
** * *
66458053 C-GAGAATATTTTGATAATTTCACAAAT
1 CAG-GGGTATTTTGGTAATTTTACAAAT
* *
66458080 CAGGGGTATTTTGGTAAATTTACAAGT
1 CAGGGGTATTTTGGTAATTTTACAAAT
* *
66458107 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAT
*
66458134 CAGGGGTATTTTAGTAATTTTACAAA-
1 CAGGGGTATTTTGGTAATTTTACAAAT
**
66458160 CTAGGGGTATTTTGGTAATTTTACTGAT
1 C-AGGGGTATTTTGGTAATTTTACAAAT
*
66458188 C-GAGGTATTTTGGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
66458208 GTAAACTAAG
Statistics
Matches: 149, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.01
26 35 0.23
27 111 0.74
28 2 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAT
Found at i:66458125 original size:54 final size:54
Alignment explanation
Indices: 66458059--66458225 Score: 201
Period size: 54 Copynumber: 3.1 Consensus size: 54
66458049 AAATCGAGAA
* * **
66458059 TATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAAATTTACAAGTTAGGGG
1 TATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAAATTTACAAACTAGGGG
* * *
66458113 TATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACTAGGGG
1 TATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAAATTTACAAACTAGGGG
** * * ** *
66458167 TATTTTGGTAATTTTACTGATC-GAGGTATTTTGGTAATTTTGTAAACTAAGGG
1 TATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAAATTTACAAACTAGGGG
66458220 TATTTT
1 TATTTT
66458226 AATAAGTTTG
Statistics
Matches: 98, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 32 0.33
54 66 0.67
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (54 bp):
TATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAAATTTACAAACTAGGGG
Found at i:66458159 original size:81 final size:81
Alignment explanation
Indices: 66458059--66458230 Score: 208
Period size: 80 Copynumber: 2.1 Consensus size: 81
66458049 AAATCGAGAA
* *
66458059 TATTTT-GATAATTTCACAAA-TCAGGGGTATTTTGGTAAATTTACAAGTTAGGGGTATTTTGGT
1 TATTTTAGATAATTTCACAAACT-AGGGGTATTTTGGTAAATTTAC-AGATAGAGGTATTTTGGT
*
66458122 AATTTTACAAACCAGGGG
64 AATTTTACAAACCAAGGG
* * * *
66458140 TATTTTAG-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACTGATCGAGGTATTTTGGTAA
1 TATTTTAGATAATTTCACAAACTAGGGGTATTTTGGTAAATTTACAGATAGAGGTATTTTGGTAA
** *
66458204 TTTTGTAAACTAAGGG
66 TTTTACAAACCAAGGG
66458220 TATTTTA-ATAA
1 TATTTTAGATAA
66458231 GTTTGTAAAT
Statistics
Matches: 78, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
80 38 0.49
81 38 0.49
82 2 0.03
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (81 bp):
TATTTTAGATAATTTCACAAACTAGGGGTATTTTGGTAAATTTACAGATAGAGGTATTTTGGTAA
TTTTACAAACCAAGGG
Found at i:66458243 original size:53 final size:52
Alignment explanation
Indices: 66458059--66458245 Score: 133
Period size: 54 Copynumber: 3.5 Consensus size: 52
66458049 AAATCGAGAA
* * * * * ** *
66458059 TATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAAATTTACAAGTTAGGGG
1 TATTTTAATAATTTTAC-AATC-GAGGTATTTTAGTAATTTTACAAACTAAGGG
** * * *
66458113 TATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACTAGGGG
1 TATTTTAATAATTTTAC-AATC-GAGGTATTTTAGTAATTTTACAAACTAAGGG
** * * **
66458167 TATTTTGGTAATTTTACTGATCGAGGTATTTTGGTAATTTTGTAAACTAAGGG
1 TATTTTAATAATTTTAC-AATCGAGGTATTTTAGTAATTTTACAAACTAAGGG
66458220 TATTTTAATAAGTTTGTA-AATCGAGG
1 TATTTTAATAA-TTT-TACAATCGAGG
66458246 ATAAAACGGT
Statistics
Matches: 113, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
53 42 0.37
54 69 0.61
55 2 0.02
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.41
Consensus pattern (52 bp):
TATTTTAATAATTTTACAATCGAGGTATTTTAGTAATTTTACAAACTAAGGG
Found at i:66458560 original size:27 final size:27
Alignment explanation
Indices: 66458236--66458548 Score: 482
Period size: 27 Copynumber: 11.6 Consensus size: 27
66458226 AATAAGTTTG
* * *
66458236 TAAATCGAGGATAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
66458263 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
66458290 TAAATCGAGGGTAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
* *
66458317 TAAATCGAGGGTAAAATAATAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
66458344 TAAATCGAGGGTAAAACAGTAATTCTG
1 TAAATCGAGGGTAAAACAGTAATTCTA
66458371 TAAATCGAGGGTAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
* *
66458398 TAAATCGAGGGTAAAATAGTAATTCTG
1 TAAATCGAGGGTAAAACAGTAATTCTA
** *
66458425 TAAATCGAGGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
66458452 TAAATCGAGGATAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
66458479 TAAATCGAGGATAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
*
66458506 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACAGTAATTCTA
66458533 TAAATCGAGGGTAAAA
1 TAAATCGAGGGTAAAA
66458549 TGGTAATCCT
Statistics
Matches: 268, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 268 1.00
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.27
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACAGTAATTCTA
Found at i:66458593 original size:27 final size:26
Alignment explanation
Indices: 66458563--66458654 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 26
66458553 AATCCTATCT
66458563 TATTTCAGTAATTTTACAAATCGAGG
1 TATTTCAGTAATTTTACAAATCGAGG
** * *
66458589 ATATTTGGGTAATTTTATAAATCGGGGG
1 -TATTTCAGTAATTTTACAAATC-GAGG
* * *
66458617 TACTTT-GGTAATTTTACAAGTCCAAGG
1 TA-TTTCAGTAATTTTACAAAT-CGAGG
66458644 TATTTCAGTAA
1 TATTTCAGTAA
66458655 CTTGGTAAAC
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
26 3 0.06
27 42 0.81
28 7 0.13
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (26 bp):
TATTTCAGTAATTTTACAAATCGAGG
Found at i:66468449 original size:49 final size:49
Alignment explanation
Indices: 66468376--66468473 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
66468366 TTATGTATGA
*
66468376 AAAGTCATTGGTTATATACCTGTTATACACATGAAAAATAAGATTCACT
1 AAAGTCATTGGTTATATACATGTTATACACATGAAAAATAAGATTCACT
*
66468425 AAAGTCATTGGTTATATACATGTTATATACATGAAAAATAAGATTCACT
1 AAAGTCATTGGTTATATACATGTTATACACATGAAAAATAAGATTCACT
66468474 CTCAAAGTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (49 bp):
AAAGTCATTGGTTATATACATGTTATACACATGAAAAATAAGATTCACT
Found at i:66476514 original size:30 final size:30
Alignment explanation
Indices: 66476478--66476559 Score: 110
Period size: 30 Copynumber: 2.7 Consensus size: 30
66476468 CATGACACAT
* *
66476478 GGGCGTGTGGCCTACCCGTGTGTTTAACAC
1 GGGCGTGTGGCCTACCCGTGTGTCTAACAA
*
66476508 GGGCGTGTGACCTACCCGTGTGTCTAACAA
1 GGGCGTGTGGCCTACCCGTGTGTCTAACAA
* **
66476538 GGGTGTGTGGATTACCCGTGTG
1 GGGCGTGTGGCCTACCCGTGTG
66476560 GAAGTGCCTA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.15, C:0.23, G:0.35, T:0.27
Consensus pattern (30 bp):
GGGCGTGTGGCCTACCCGTGTGTCTAACAA
Found at i:66486769 original size:26 final size:26
Alignment explanation
Indices: 66486736--66486790 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
66486726 CCCTCTTTGA
66486736 TCAATAAAGTGCATTTTATATTGCTT
1 TCAATAAAGTGCATTTTATATTGCTT
66486762 TCAATAAAGTGCATTTTATATTGCTT
1 TCAATAAAGTGCATTTTATATTGCTT
66486788 TCA
1 TCA
66486791 TATTTTTAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (26 bp):
TCAATAAAGTGCATTTTATATTGCTT
Found at i:66490365 original size:27 final size:28
Alignment explanation
Indices: 66490335--66490391 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
66490325 TTTGTGTATT
*
66490335 TGTGAAA-GAGGGACTAAATTGTAAAAA
1 TGTGAAACGAGGGACTAAAGTGTAAAAA
* *
66490362 TGTGAAACTTAGGGGCTAAAGTGTAAAAA
1 TGTGAAAC-GAGGGACTAAAGTGTAAAAA
66490391 T
1 T
66490392 TCCCAAATAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.28
29 18 0.72
ACGTcount: A:0.44, C:0.05, G:0.26, T:0.25
Consensus pattern (28 bp):
TGTGAAACGAGGGACTAAAGTGTAAAAA
Found at i:66490825 original size:43 final size:42
Alignment explanation
Indices: 66490743--66490898 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 42
66490733 TGTGACTACA
* * *
66490743 TGTAAGACCATGTCTGGGACATTGGCATTGTATTTTGATTACG
1 TGTAAGACCATGTCTGGGATATTGGCATCGTA-TATGATTACG
* *
66490786 TGTAAGACCATGTCTGGGATATTGGCACCGTTATATGATTTCG
1 TGTAAGACCATGTCTGGGATATTGGCATCG-TATATGATTACG
* * * * * *
66490829 TGTAAGA-CACTGTTTAGGATAGTGGCATCGATATGTGATAACA
1 TGTAAGACCA-TGTCTGGGATATTGGCATCG-TATATGATTACG
*
66490872 TGTAAGACCATATCTGGGATA-TGGCAT
1 TGTAAGACCATGTCTGGGATATTGGCAT
66490899 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 8 0.09
43 81 0.87
44 4 0.04
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGATATTGGCATCGTATATGATTACG
Found at i:66491058 original size:22 final size:22
Alignment explanation
Indices: 66491033--66491077 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
66491023 AGTATTTGAA
66491033 AAGGGAAGTATTGGATGAACTC
1 AAGGGAAGTATTGGATGAACTC
*
66491055 AAGGGAAGTATTTGATGAACTC
1 AAGGGAAGTATTGGATGAACTC
66491077 A
1 A
66491078 CTTACGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.09, G:0.29, T:0.24
Consensus pattern (22 bp):
AAGGGAAGTATTGGATGAACTC
Found at i:66493127 original size:18 final size:18
Alignment explanation
Indices: 66493082--66493127 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
66493072 ATGCTAGAAC
66493082 TTATATG-TTTAATATTA
1 TTATATGATTTAATATTA
* *
66493099 -TAAATGTATTTAATTTTA
1 TTATATG-ATTTAATATTA
66493117 TTATATGATTT
1 TTATATGATTT
66493128 TTTTCTTGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
16 5 0.22
18 13 0.57
19 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.59
Consensus pattern (18 bp):
TTATATGATTTAATATTA
Found at i:66496552 original size:40 final size:40
Alignment explanation
Indices: 66496488--66496588 Score: 134
Period size: 40 Copynumber: 2.6 Consensus size: 40
66496478 ATACGGTACC
* *
66496488 ACTTGGTGTGTAGGGTTGGATGGGTCGATTTTATCCCCAT
1 ACTTGGTGTGTAGGGCTGGATGGGTCGATTTCATCCCCAT
*
66496528 ACTTGGTGTGTAGGGCTGGGTGGGTCGATTTCATCCCC--
1 ACTTGGTGTGTAGGGCTGGATGGGTCGATTTCATCCCCAT
* * *
66496566 ACATGGTGTGTTGGGTTGGATGG
1 ACTTGGTGTGTAGGGCTGGATGG
66496589 AGATGGTGTC
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
38 19 0.35
40 35 0.65
ACGTcount: A:0.13, C:0.15, G:0.38, T:0.35
Consensus pattern (40 bp):
ACTTGGTGTGTAGGGCTGGATGGGTCGATTTCATCCCCAT
Found at i:66505710 original size:46 final size:46
Alignment explanation
Indices: 66505660--66505831 Score: 208
Period size: 45 Copynumber: 3.7 Consensus size: 46
66505650 TGGTTGAGCA
*
66505660 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
66505706 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
66505753 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
66505799 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66505832 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
45 34 0.32
46 30 0.28
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:66506092 original size:19 final size:20
Alignment explanation
Indices: 66506055--66506092 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
66506045 ATAAGGTGGT
66506055 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
66506075 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
66506093 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:66513292 original size:46 final size:46
Alignment explanation
Indices: 66513242--66513414 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
66513232 TGGTTGAGCA
*
66513242 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
66513288 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
66513335 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
66513381 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
66513415 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:66513398 original size:93 final size:93
Alignment explanation
Indices: 66513239--66513409 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
66513229 GGATGGTTGA
* *
66513239 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
66513304 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
66513332 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
66513397 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
66513410 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66513676 original size:19 final size:20
Alignment explanation
Indices: 66513639--66513676 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
66513629 ATAAGGTGGT
66513639 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
66513659 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
66513677 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:66515215 original size:17 final size:17
Alignment explanation
Indices: 66515193--66515237 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
66515183 AATTGGGCCG
*
66515193 TGTGGGCCACATGGGTA
1 TGTGGGCCACATGGGCA
* *
66515210 TGTGGGACACATGGGCG
1 TGTGGGCCACATGGGCA
66515227 TGTGGGCCACA
1 TGTGGGCCACA
66515238 CTGGTGAACC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.18, C:0.20, G:0.42, T:0.20
Consensus pattern (17 bp):
TGTGGGCCACATGGGCA
Found at i:66515705 original size:40 final size:40
Alignment explanation
Indices: 66515661--66515739 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
66515651 ATATGGTACC
*
66515661 ACTTGGTGTATAGGGTTGGATGGGTCGATTAT-ATCCCCAT
1 ACTTGGTGTATAGGGCTGGATGGGTCGATT-TCATCCCCAT
* * *
66515701 ACTTGGTGTGTAGGGCTGGGTGGGTTGATTTCATCCCCA
1 ACTTGGTGTATAGGGCTGGATGGGTCGATTTCATCCCCA
66515740 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.03
40 33 0.97
ACGTcount: A:0.16, C:0.16, G:0.33, T:0.34
Consensus pattern (40 bp):
ACTTGGTGTATAGGGCTGGATGGGTCGATTTCATCCCCAT
Found at i:66516846 original size:37 final size:37
Alignment explanation
Indices: 66516805--66516953 Score: 244
Period size: 37 Copynumber: 4.0 Consensus size: 37
66516795 TGGTAATTTC
*
66516805 AAGACTTATGTCATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
66516842 AAGACTTATGTAATGTTTTTAATTATGTAATGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
* *
66516879 AATACTTATGTAATATTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
* *
66516916 AATACTTATGTAATGTTTTTAATTATGTATTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
66516953 A
1 A
66516954 TTCGGTTAAT
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.34, C:0.06, G:0.13, T:0.48
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:66516852 original size:20 final size:19
Alignment explanation
Indices: 66516827--66516930 Score: 81
Period size: 20 Copynumber: 5.5 Consensus size: 19
66516817 ATGTTTTTAA
*
66516827 TTATGTAGTGATTCAAAGAC
1 TTATGTAATGATTCAAA-AC
***
66516847 TTATGTAATG-TTTTTAA-
1 TTATGTAATGATTCAAAAC
66516864 TTATGTAATGATTCAAATAC
1 TTATGTAATGATTCAAA-AC
***
66516884 TTATGTAAT-ATTTTTAA-
1 TTATGTAATGATTCAAAAC
*
66516901 TTATGTAGTGATTCAAATAC
1 TTATGTAATGATTCAAA-AC
66516921 TTATGTAATG
1 TTATGTAATG
66516931 TTTTTAATTA
Statistics
Matches: 63, Mismatches: 15, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
17 18 0.29
18 9 0.14
19 9 0.14
20 27 0.43
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.46
Consensus pattern (19 bp):
TTATGTAATGATTCAAAAC
Found at i:66516869 original size:17 final size:17
Alignment explanation
Indices: 66516810--66516944 Score: 72
Period size: 17 Copynumber: 7.4 Consensus size: 17
66516800 ATTTCAAGAC
*
66516810 TTATGTCATGTTTTTAA
1 TTATGTAATGTTTTTAA
* ***
66516827 TTATGTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
66516846 CTTATGTAATGTTTTTAA
1 -TTATGTAATGTTTTTAA
** *
66516864 TTATGTAATGATTCAAATAC
1 TTATGTAATG-TT--TTTAA
*
66516884 TTATGTAATATTTTTAA
1 TTATGTAATGTTTTTAA
* ** *
66516901 TTATGTAGTGATTCAAATAC
1 TTATGTAATG-TT--TTTAA
66516921 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
66516938 TTATGTA
1 TTATGTA
66516945 TTGATTCAAT
Statistics
Matches: 84, Mismatches: 25, Indels: 18
0.66 0.20 0.14
Matches are distributed among these distances:
17 37 0.44
18 8 0.10
19 8 0.10
20 31 0.37
ACGTcount: A:0.33, C:0.05, G:0.13, T:0.50
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:66516972 original size:9 final size:9
Alignment explanation
Indices: 66516960--66517000 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
66516950 TCAATTCGGT
66516960 TAATTCAGG
1 TAATTCAGG
*
66516969 TAATTCAGT
1 TAATTCAGG
*
66516978 TAATTCGGG
1 TAATTCAGG
*
66516987 TAATTCAGT
1 TAATTCAGG
66516996 TAATT
1 TAATT
66517001 TTTAACCAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (9 bp):
TAATTCAGG
Found at i:66516979 original size:18 final size:18
Alignment explanation
Indices: 66516952--66517000 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
66516942 GTATTGATTC
*
66516952 AATTCGGTTAATTCAGGT
1 AATTCAGTTAATTCAGGT
*
66516970 AATTCAGTTAATTCGGGT
1 AATTCAGTTAATTCAGGT
66516988 AATTCAGTTAATT
1 AATTCAGTTAATT
66517001 TTTAACCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (18 bp):
AATTCAGTTAATTCAGGT
Found at i:66532008 original size:18 final size:18
Alignment explanation
Indices: 66531985--66532027 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
66531975 ATAAATAAAT
*
66531985 TAAAAGGTTTAAAGAAGA
1 TAAAAGGTTTAAAAAAGA
*
66532003 TGAAAGG-TTAAAAAAGA
1 TAAAAGGTTTAAAAAAGA
66532020 TAAAAGGT
1 TAAAAGGT
66532028 GGGAAGGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.56, C:0.00, G:0.23, T:0.21
Consensus pattern (18 bp):
TAAAAGGTTTAAAAAAGA
Found at i:66537446 original size:6 final size:6
Alignment explanation
Indices: 66537435--66537477 Score: 59
Period size: 6 Copynumber: 6.8 Consensus size: 6
66537425 TAAAGGAGAA
*
66537435 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAA GATAGAGT GAAGA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GA-AGA-T GAAGA
66537478 GATGGAGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
6 25 0.76
7 6 0.18
8 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.35, T:0.14
Consensus pattern (6 bp):
GAAGAT
Found at i:66537450 original size:15 final size:15
Alignment explanation
Indices: 66537402--66537467 Score: 59
Period size: 15 Copynumber: 4.6 Consensus size: 15
66537392 AGTGACATAC
* *
66537402 GAAGGAGATGAAGTT
1 GAAGAAGATGAAGAT
* *
66537417 GCAGAAGATAAAGGA-
1 GAAGAAGATGAA-GAT
66537432 GAAGAAGATGAAGAT
1 GAAGAAGATGAAGAT
66537447 ---GAAGATGAAGAT
1 GAAGAAGATGAAGAT
66537459 GAAGAAGAT
1 GAAGAAGAT
66537468 AGAGTGAAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
12 12 0.30
14 2 0.05
15 25 0.62
16 1 0.03
ACGTcount: A:0.50, C:0.02, G:0.35, T:0.14
Consensus pattern (15 bp):
GAAGAAGATGAAGAT
Found at i:66540594 original size:20 final size:20
Alignment explanation
Indices: 66540569--66540612 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
66540559 TAAATTTAAT
66540569 TTTAATATAATATTTGGTAA
1 TTTAATATAATATTTGGTAA
* * *
66540589 TTTAATTTAATTTTTGTTAA
1 TTTAATATAATATTTGGTAA
66540609 TTTA
1 TTTA
66540613 GTACTTAAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (20 bp):
TTTAATATAATATTTGGTAA
Found at i:66547700 original size:20 final size:20
Alignment explanation
Indices: 66547675--66547713 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
66547665 CTAAATGCAA
66547675 ATTTTAATTATTT-AAAAAAT
1 ATTTT-ATTATTTGAAAAAAT
*
66547695 ATTTTATTTTTTGAAAAAA
1 ATTTTATTATTTGAAAAAA
66547714 AATATTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (20 bp):
ATTTTATTATTTGAAAAAAT
Found at i:66549818 original size:60 final size:60
Alignment explanation
Indices: 66549695--66549855 Score: 157
Period size: 60 Copynumber: 2.6 Consensus size: 60
66549685 TAGGCCTAAA
* * *
66549695 CCCTATTCAGAAATCAGAGT-TAACTGAGCCTTAGCCCATATCAATATTAATCAGGGCCATAG
1 CCCTATT-ACAAATCAGAGTAT-ACTGGGCC-TAGCCCATATCAATATCAATCAGGGCCATAG
* * * **
66549757 CCC-CTTACAATATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAATCTGGGCTGTAG
1 CCCTATTACAA-ATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCAGGGCCATAG
* * *
66549817 CCCTATTACAAGTC-GAGATATATTGGGCCTTGCCCATAT
1 CCCTATTACAAATCAGAG-TATACTGGGCCTAGCCCATAT
66549856 TAACACAATT
Statistics
Matches: 83, Mismatches: 12, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
59 3 0.04
60 53 0.64
61 23 0.28
62 4 0.05
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (60 bp):
CCCTATTACAAATCAGAGTATACTGGGCCTAGCCCATATCAATATCAATCAGGGCCATAG
Found at i:66554066 original size:47 final size:47
Alignment explanation
Indices: 66553949--66554117 Score: 250
Period size: 47 Copynumber: 3.6 Consensus size: 47
66553939 CCCTTCGGGA
* * * * * *
66553949 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66553996 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66554042 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66554089 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
66554118 TATTCAAATA
Statistics
Matches: 111, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
46 39 0.35
47 53 0.48
49 19 0.17
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66558612 original size:40 final size:40
Alignment explanation
Indices: 66558404--66558705 Score: 287
Period size: 40 Copynumber: 7.6 Consensus size: 40
66558394 CCAGCATGAT
* * * *
66558404 TGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
66558444 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
66558484 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
66558524 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
66558564 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
66558605 TGC-CTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATA-TA-TCA-CTAGCACGAA
* *
66558644 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
66558684 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
66558706 CATCATTCGA
Statistics
Matches: 225, Mismatches: 27, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
38 3 0.01
39 31 0.14
40 169 0.75
41 22 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:66559054 original size:29 final size:29
Alignment explanation
Indices: 66559020--66559093 Score: 98
Period size: 29 Copynumber: 2.6 Consensus size: 29
66559010 TAATCAACCA
*
66559020 CGCACACTTAGTGCCATGTACTTT-AA-AC
1 CGCACACTTAGTGCCATGCA-TTTCAAGAC
*
66559048 TCGCACACTTAGTGCCATGCATTTCAAGGC
1 -CGCACACTTAGTGCCATGCATTTCAAGAC
66559078 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
66559094 ATCTCACAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 3 0.07
29 37 0.90
30 1 0.02
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGAC
Found at i:66559125 original size:43 final size:43
Alignment explanation
Indices: 66559077--66559220 Score: 279
Period size: 43 Copynumber: 3.3 Consensus size: 43
66559067 CATTTCAAGG
*
66559077 CCGCACACTTAGTGCCAATCTCACAACCATGAACACTTATTGC
1 CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGC
66559120 CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGC
1 CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGC
66559163 CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGC
1 CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGC
66559206 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
66559221 TGAAAACCAA
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.28, C:0.35, G:0.14, T:0.23
Consensus pattern (43 bp):
CCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGC
Found at i:66560721 original size:47 final size:47
Alignment explanation
Indices: 66560643--66560812 Score: 250
Period size: 47 Copynumber: 3.6 Consensus size: 47
66560633 CCCTTCGGGA
* * * * * *
66560643 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66560690 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66560737 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66560784 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
66560813 TATTCAAATA
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 92 0.83
49 19 0.17
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66567530 original size:42 final size:42
Alignment explanation
Indices: 66567481--66567572 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
66567471 TTTGAGACTG
*
66567481 TGTAAGACCATATCTGGGATATGGTGTCAATATGAGACTTCA
1 TGTAAGACCATATCTGGGATATGGTATCAATATGAGACTTCA
* * *
66567523 TGTAAGACCATATCTGGGATATGGTATCGATATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGTATCAATATGAGACTTCA
66567565 TGTAAGAC
1 TGTAAGAC
66567573 TACGAGATCC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGTATCAATATGAGACTTCA
Found at i:66570701 original size:17 final size:17
Alignment explanation
Indices: 66570679--66570713 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
66570669 AATTTCGGTT
66570679 ATGATGAACAAAGATGG
1 ATGATGAACAAAGATGG
66570696 ATGATGAACAAAGATGG
1 ATGATGAACAAAGATGG
66570713 A
1 A
66570714 CAAAACTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.06, G:0.29, T:0.17
Consensus pattern (17 bp):
ATGATGAACAAAGATGG
Found at i:66570843 original size:26 final size:26
Alignment explanation
Indices: 66570804--66570885 Score: 119
Period size: 26 Copynumber: 3.2 Consensus size: 26
66570794 TGAAATGCCC
*
66570804 ATCATGGAACATTTACCTAAAGCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
66570830 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
66570856 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
66570882 ATCA
1 ATCA
66570886 ATTTGTACCA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.38, C:0.22, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:66573701 original size:52 final size:51
Alignment explanation
Indices: 66573591--66573699 Score: 146
Period size: 52 Copynumber: 2.1 Consensus size: 51
66573581 ATTTTTAGGT
* *
66573591 CATTTTCATTTTGGAGAAAACCACATTCATTTTCAAATGATTCCACTTCTC
1 CATTTTCATTTTGAAGAAAACCACAATCATTTTCAAATGATTCCACTTCTC
* * * *
66573642 TATTTTCATTTTTGAAGAAAACCATAATCATTTTCAAATGTTTCCTATTTCTC
1 CATTTTCA-TTTTGAAGAAAACCACAATCATTTTCAAATGATTCC-ACTTCTC
66573695 CATTT
1 CATTT
66573700 CACCATTTCT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
51 7 0.14
52 32 0.65
53 10 0.20
ACGTcount: A:0.29, C:0.20, G:0.06, T:0.44
Consensus pattern (51 bp):
CATTTTCATTTTGAAGAAAACCACAATCATTTTCAAATGATTCCACTTCTC
Found at i:66583048 original size:26 final size:26
Alignment explanation
Indices: 66583012--66583158 Score: 177
Period size: 26 Copynumber: 5.7 Consensus size: 26
66583002 AATCAAATCA
*
66583012 AATATAAAAAACAATTTAAAATAAAT
1 AATATATAAAACAATTTAAAATAAAT
*
66583038 AATATATAAAACAATTTGAAATAAAT
1 AATATATAAAACAATTTAAAATAAAT
* * * **
66583064 AACATATAAGACAATTTAAAGTAACC
1 AATATATAAAACAATTTAAAATAAAT
* *
66583090 AGTATATAAAACGATTTAAAATAAAT
1 AATATATAAAACAATTTAAAATAAAT
* *
66583116 AGTATATAAAACAGTTTAAAATAAAT
1 AATATATAAAACAATTTAAAATAAAT
* *
66583142 AATATAAAAAATAATTT
1 AATATATAAAACAATTT
66583159 GAAGCTACAA
Statistics
Matches: 100, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 100 1.00
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (26 bp):
AATATATAAAACAATTTAAAATAAAT
Found at i:66583158 original size:78 final size:78
Alignment explanation
Indices: 66583014--66583158 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 78
66583004 TCAAATCAAA
* * *
66583014 TATAAAAAACAATTTAAAATAAATAATATATAAAACAATTTGAAATAAATAACATATAAGACAAT
1 TATAAAAAACAATTTAAAATAAATAATATATAAAACAATTTAAAATAAATAACATAAAAAACAAT
66583079 TTAAAGTAACCAG
66 TTAAAGTAACCAG
* * * * * *
66583092 TATATAAAACGATTTAAAATAAATAGTATATAAAACAGTTTAAAATAAATAATATAAAAAATAAT
1 TATAAAAAACAATTTAAAATAAATAATATATAAAACAATTTAAAATAAATAACATAAAAAACAAT
66583157 TT
66 TT
66583159 GAAGCTACAA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
78 58 1.00
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.30
Consensus pattern (78 bp):
TATAAAAAACAATTTAAAATAAATAATATATAAAACAATTTAAAATAAATAACATAAAAAACAAT
TTAAAGTAACCAG
Found at i:66585412 original size:48 final size:47
Alignment explanation
Indices: 66585320--66585435 Score: 126
Period size: 48 Copynumber: 2.4 Consensus size: 47
66585310 ATCAGTGTCG
* * *
66585320 ATGCCATGTCCCAGACATGGTTTATATGGGACTTCACATTGATGCCA
1 ATGCCATATCCCAGACATGGTTTACATGGGACTTCACACTGATGCCA
* * * *
66585367 ATGCCATATCCTAGATATGGTATTACATGGGA-TCTCATACTGATGCCG
1 ATGCCATATCCCAGACATGGT-TTACATGGGACT-TCACACTGATGCCA
* *
66585415 ATGCCATGTCCCAAACATGGT
1 ATGCCATATCCCAGACATGGT
66585436 CTTATACAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
47 19 0.34
48 37 0.66
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (47 bp):
ATGCCATATCCCAGACATGGTTTACATGGGACTTCACACTGATGCCA
Found at i:66589813 original size:131 final size:132
Alignment explanation
Indices: 66589590--66590050 Score: 355
Period size: 131 Copynumber: 3.5 Consensus size: 132
66589580 AATGGGAGAT
* * * * *
66589590 TGCAACCCAACACGATAGGGAACTACTCCCCAAATTGCCAAACATCGAGTATTTCCTTTGTTTTA
1 TGCAACCCAGCACGATAGGGAACGACTTCCCAAATTGCCAAACATCGAGTATTACCTTCGTTTTA
* * * * *
66589655 AA-GAGTCTTTAGAAAACGTGAGT-AAATTCCGAAGGAATCTTCGATTGTTTTGAA-CAAATGAA
66 AAGGA-TTTTTAGAAGACGTGAGTGAAATTCCGAAGGAATATTCGATTATTTT-AAGCAAACGAA
66589717 AAAG
129 AAAG
* * * *
66589721 TGCAACCCAGCACGATAGGGCACGA-TTCTCAAATTGTCAAACACCGAGTATTACCTTCGTTTTA
1 TGCAACCCAGCACGATAGGGAACGACTTCCCAAATTGCCAAACATCGAGTATTACCTTCGTTTTA
* ** * * *
66589785 AAGGATTTTTAGAAGACATGAGTGAAATTTTGAAGGGATATTTGATTATTTTAAGCAAACGAGAA
66 AAGGATTTTTAGAAGACGTGAGTGAAATTCCGAAGGAATATTCGATTATTTTAAGCAAACGAAAA
*
66589850 AT
131 AG
* * * * * * *
66589852 TGCAACCCAGCACGTTA-GGATACGATTTCGCAAATTGCCAAATATTGCA-CATCACCTTCG-TT
1 TGCAACCCAGCACGATAGGGA-ACGACTTCCCAAATTGCCAAACATCG-AGTATTACCTTCGTTT
* * * ** * ** * * * *
66589914 TAAGGGATTTTTAAAAGACGTGGGTGAAATTCTAAAGGGACCTTCGATTACTTTGAGCAAGCGAG
64 TAAAGGATTTTTAGAAGACGTGAGTGAAATTCCGAAGGAATATTCGATTATTTTAAGCAAACGAA
*
66589979 AAAT
129 AAAG
* ** * ** * **
66589983 TGCAACCCAACAC-ATTAGGGCCCGA-TTCCACGAATTGCCAAGTATCGAATATCGCCTTCGTTT
1 TGCAACCCAGCACGA-TAGGGAACGACTTCC-CAAATTGCCAAACATCGAGTATTACCTTCGTTT
66590046 TAAAG
64 TAAAG
66590051 AATTCTTAAT
Statistics
Matches: 266, Mismatches: 53, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
130 58 0.22
131 174 0.65
132 33 0.12
133 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (132 bp):
TGCAACCCAGCACGATAGGGAACGACTTCCCAAATTGCCAAACATCGAGTATTACCTTCGTTTTA
AAGGATTTTTAGAAGACGTGAGTGAAATTCCGAAGGAATATTCGATTATTTTAAGCAAACGAAAA
AG
Found at i:66592569 original size:19 final size:20
Alignment explanation
Indices: 66592545--66592591 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
66592535 CATTTTGGGG
* *
66592545 TTGGGTCTAGGTTTAGTTA-
1 TTGGGTCTAGATTTAGCTAT
66592564 TTGGGTCTAGATTTAGCTAT
1 TTGGGTCTAGATTTAGCTAT
66592584 TTGGGTCT
1 TTGGGTCT
66592592 TGGGTTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.15, C:0.09, G:0.30, T:0.47
Consensus pattern (20 bp):
TTGGGTCTAGATTTAGCTAT
Found at i:66596885 original size:48 final size:48
Alignment explanation
Indices: 66596737--66596905 Score: 146
Period size: 48 Copynumber: 3.5 Consensus size: 48
66596727 CCACATTTCA
* * *
66596737 ATGCCATATCCTAGATATGGTCTTATAT-GAAGTCTCATATTAATGTCG
1 ATGCCATATCCTAGATATGGTCTTATATGGGA-TCTCATACTGATGTCG
* * * * * * *
66596785 ATGCCATGTCCCAGACATGGTCTCATATGGGAAATCACAT-C-GATGCCA
1 ATGCCATATCCTAGATATGGTCTTATATGGG--ATCTCATACTGATGTCG
* * *
66596833 ATGCCATATCCTAGATATGGTATTACATGGGATCTTATACTGATGTCG
1 ATGCCATATCCTAGATATGGTCTTATATGGGATCTCATACTGATGTCG
* * *
66596881 ATGCCATATCCCAAACATGGTCTTA
1 ATGCCATATCCTAGATATGGTCTTA
66596906 GTCTTATCGA
Statistics
Matches: 92, Mismatches: 24, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
46 5 0.05
47 1 0.01
48 79 0.86
49 1 0.01
50 5 0.05
51 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (48 bp):
ATGCCATATCCTAGATATGGTCTTATATGGGATCTCATACTGATGTCG
Found at i:66598209 original size:18 final size:18
Alignment explanation
Indices: 66598186--66598225 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
66598176 CTTAAAACTT
66598186 TATCGAGAGGAATATTTA
1 TATCGAGAGGAATATTTA
*
66598204 TATCGAGAGGAATATTTC
1 TATCGAGAGGAATATTTA
66598222 TATC
1 TATC
66598226 TCAGATTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.35
Consensus pattern (18 bp):
TATCGAGAGGAATATTTA
Found at i:66603399 original size:28 final size:26
Alignment explanation
Indices: 66603350--66603401 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
66603340 ATAAATTTAG
66603350 ATTTTTTTTAGGATTTACAAAATATA
1 ATTTTTTTTAGGATTTACAAAATATA
* *
66603376 ATTTTTTGTTATGACTTTATAAAATA
1 ATTTTTT-TTAGGA-TTTACAAAATA
66603402 CACAAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.32
27 5 0.23
28 10 0.45
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.52
Consensus pattern (26 bp):
ATTTTTTTTAGGATTTACAAAATATA
Found at i:66608601 original size:27 final size:27
Alignment explanation
Indices: 66608563--66608662 Score: 155
Period size: 27 Copynumber: 3.7 Consensus size: 27
66608553 ACAAATAATC
* *
66608563 GTGGCAGGGCCACCAGAACAGATATAT
1 GTGGCAGAGCCACCAGAACAGATATTT
*
66608590 GTGGCAGAGCCACCAGATCAGATATTT
1 GTGGCAGAGCCACCAGAACAGATATTT
*
66608617 GTGGCAGAGCCACCAGATCAGATATTT
1 GTGGCAGAGCCACCAGAACAGATATTT
*
66608644 GTGGCATAGCCACCAGAAC
1 GTGGCAGAGCCACCAGAAC
66608663 GCTTCCTCCA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.18
Consensus pattern (27 bp):
GTGGCAGAGCCACCAGAACAGATATTT
Found at i:66610311 original size:26 final size:26
Alignment explanation
Indices: 66610273--66610356 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
66610263 CATGAAATTC
* * *
66610273 TTATCATGAAACATTTACCGAACCCA
1 TTATCATGGAACATTTACCTAACCTA
66610299 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
66610325 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
66610351 TTATCA
1 TTATCA
66610357 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:66614358 original size:46 final size:46
Alignment explanation
Indices: 66614291--66614383 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
66614281 GCAAACAGAT
66614291 AGAATATAGTGAAATGAAGTATAGTGTTCTGTAAGTGTCATAGGTC
1 AGAATATAGTGAAATGAAGTATAGTGTTCTGTAAGTGTCATAGGTC
*
66614337 AGAATATAGTGAACTGAAGTATAGTGTTCTGTAAGTGTCATAGGTC
1 AGAATATAGTGAAATGAAGTATAGTGTTCTGTAAGTGTCATAGGTC
66614383 A
1 A
66614384 ATTGTAAAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (46 bp):
AGAATATAGTGAAATGAAGTATAGTGTTCTGTAAGTGTCATAGGTC
Found at i:66616049 original size:25 final size:25
Alignment explanation
Indices: 66615944--66616051 Score: 83
Period size: 25 Copynumber: 4.3 Consensus size: 25
66615934 CTTGGTAATC
* *
66615944 AAATGTCATTC-TGATTCTAAAAATG
1 AAATGTCA-TCATGATTTTGAAAATG
* * * * *
66615969 ATATGTTATAATGATTTTGATAATA
1 AAATGTCATCATGATTTTGAAAATG
* * ** *
66615994 AAATGTCATTATGATCTTGGTAATC
1 AAATGTCATCATGATTTTGAAAATG
66616019 AAATGTCATCATGATTTTGAAAATG
1 AAATGTCATCATGATTTTGAAAATG
*
66616044 ATATGTCA
1 AAATGTCA
66616052 AATTGGTTAT
Statistics
Matches: 63, Mismatches: 19, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
24 1 0.02
25 62 0.98
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (25 bp):
AAATGTCATCATGATTTTGAAAATG
Found at i:66619087 original size:65 final size:65
Alignment explanation
Indices: 66619005--66619137 Score: 248
Period size: 65 Copynumber: 2.0 Consensus size: 65
66618995 GTTTAAGGAT
*
66619005 CATTTGATGTTGAAATTCATGTTTTCTGGGCTATTTTAGAGTGGTTTCGTGACCACATGGGTGGC
1 CATTTGATGTCGAAATTCATGTTTTCTGGGCTATTTTAGAGTGGTTTCGTGACCACATGGGTGGC
*
66619070 CATTTGATGTCGAAATTCATGTTTTCTGGGCTGTTTTAGAGTGGTTTCGTGACCACATGGGTGGC
1 CATTTGATGTCGAAATTCATGTTTTCTGGGCTATTTTAGAGTGGTTTCGTGACCACATGGGTGGC
66619135 CAT
1 CAT
66619138 ACAGGCGTGT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.18, C:0.15, G:0.28, T:0.39
Consensus pattern (65 bp):
CATTTGATGTCGAAATTCATGTTTTCTGGGCTATTTTAGAGTGGTTTCGTGACCACATGGGTGGC
Found at i:66621112 original size:428 final size:428
Alignment explanation
Indices: 66620315--66621116 Score: 1329
Period size: 428 Copynumber: 1.9 Consensus size: 428
66620305 GCCATAACTT
* **
66620315 AAAGTATTTCTAGTCACAAAATACCGAGATAACTCGTTGATAGTGTGAGGCGATCTCCAATGTCC
1 AAAGTATTTCTAGTCACAAAATACCGAGATAACTCATTGATAGTGTGAGGCGATCTCCAACATCC
* * *
66620380 TTATGATTTTTCGAGTTGTCTTTGTGATACTATAAAAAAGAGAGAAAAGAAAAGGAGTAAGCATA
66 TTATGATTTTCCGAGTTGGCTTTGCGATACTATAAAAAAGAGAGAAAAGAAAAGGAGTAAGCATA
* * *
66620445 AAGCTTAGTAAGTTTGCATGTAAATAAATAACAACATTCTAAATGAATTATCAAGATAACCTGAA
131 AAGCTTAGAAAGTTTCCATGTAAATAAATAACAACATTCTAAATGAATTATCAAGATAACCTAAA
*
66620510 CCTTTCAAACATGGACTTGTCTTACCTTCCCTTTGGTACACTCTTTGAATTTTCCGTTGAACCAT
196 CCTTTCAAACATGGACTTATCTTACCTTCCCTTTGGTACACTCTTTGAATTTTCCGTTGAACCAT
* * *
66620575 TTGGAATACGAAGGATATATGGGTACCTTTCCTTTTTAAACTTACCATTTCCATGTCTTGACATG
261 TTGGAATACGAAGGATACACGGGTACCTTTCCTTTTTAAACTTACCATTGCCATGTCTTGACATG
***
66620640 GTCTTATGTGGTATCCTTGCCTTATGAACTCACCATTGCCATGCCTTGGCGTGGTCTTACATGGG
326 GTCTTACAAGGTATCCTTGCCTTATGAACTCACCATTGCCATGCCTTGGCGTGGTCTTACATGGG
66620705 ATCTTTGCTTTATAGTAGTTTATCAATTCCATGGACAA
391 ATCTTTGCTTTATAGTAGTTTATCAATTCCATGGACAA
***
66620743 AAAGTATTTCTAGTCACAAAATACCGAGATAACTCATTGATAGTGTGAGGCGATCTTTGACATCC
1 AAAGTATTTCTAGTCACAAAATACCGAGATAACTCATTGATAGTGTGAGGCGATCTCCAACATCC
* * * *
66620808 TTACT-ATTTTCCGAGTTGGCTTTGCGATACTGTGAAAAAGAGAGAAAAGAAAGGGGGTAAGCAT
66 TTA-TGATTTTCCGAGTTGGCTTTGCGATACTATAAAAAAGAGAGAAAAGAAAAGGAGTAAGCAT
*
66620872 AAAGCTTAGAAAGTTTCCATGTAAATAAATAACAATATTCTAAATGAATTATCAAGATAACCTAA
130 AAAGCTTAGAAAGTTTCCATGTAAATAAATAACAACATTCTAAATGAATTATCAAGATAACCTAA
*
66620937 ACCTTTCGAACATGGACTTATCTTACCTTCCCTTTGGTACACTCTTTGAATTTTCCGTTGAACCA
195 ACCTTTCAAACATGGACTTATCTTACCTTCCCTTTGGTACACTCTTTGAATTTTCCGTTGAACCA
*
66621002 TTAT-GAATACTAAGGATACACGGGTACCTTTCCTTTTTAAACTTACCATTGCCATGTCTTGACA
260 TT-TGGAATACGAAGGATACACGGGTACCTTTCCTTTTTAAACTTACCATTGCCATGTCTTGACA
*
66621066 TGGTCTTACAAGGTATCCTTGCCTTATGAACTTACCATTGCCATGCCTTGG
324 TGGTCTTACAAGGTATCCTTGCCTTATGAACTCACCATTGCCATGCCTTGG
66621117 TGAAACACCC
Statistics
Matches: 345, Mismatches: 27, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
428 343 0.99
429 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (428 bp):
AAAGTATTTCTAGTCACAAAATACCGAGATAACTCATTGATAGTGTGAGGCGATCTCCAACATCC
TTATGATTTTCCGAGTTGGCTTTGCGATACTATAAAAAAGAGAGAAAAGAAAAGGAGTAAGCATA
AAGCTTAGAAAGTTTCCATGTAAATAAATAACAACATTCTAAATGAATTATCAAGATAACCTAAA
CCTTTCAAACATGGACTTATCTTACCTTCCCTTTGGTACACTCTTTGAATTTTCCGTTGAACCAT
TTGGAATACGAAGGATACACGGGTACCTTTCCTTTTTAAACTTACCATTGCCATGTCTTGACATG
GTCTTACAAGGTATCCTTGCCTTATGAACTCACCATTGCCATGCCTTGGCGTGGTCTTACATGGG
ATCTTTGCTTTATAGTAGTTTATCAATTCCATGGACAA
Found at i:66624541 original size:21 final size:21
Alignment explanation
Indices: 66624517--66624562 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
66624507 CCACACGAGT
*
66624517 GTGTGAGGACTTCACAAGGGC
1 GTGTGAGGACTCCACAAGGGC
* * *
66624538 GTGTGTGGCCTCCACATGGGC
1 GTGTGAGGACTCCACAAGGGC
66624559 GTGT
1 GTGT
66624563 AGACCCCCAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.15, C:0.22, G:0.39, T:0.24
Consensus pattern (21 bp):
GTGTGAGGACTCCACAAGGGC
Found at i:66626940 original size:46 final size:45
Alignment explanation
Indices: 66626861--66627003 Score: 191
Period size: 46 Copynumber: 3.2 Consensus size: 45
66626851 GCCTTAACAA
*
66626861 GTGACCAAACACTATTATCGATTCGTGTAGGTTCAACCCTAATAG
1 GTGACCAAGCACTATTATCGATTCGTGTAGGTTCAACCCTAATAG
*
66626906 GTGACCAAGCACTATTACTCGATTTGTGTAGGTTCAACCCTAA-AGG
1 GTGACCAAGCACTATTA-TCGATTCGTGTAGGTTCAACCCTAATA-G
* * *
66626952 GTGACCAGGCACTATTGTCTGATTCGTGTAGGTT-AACCCTAATGG
1 GTGACCAAGCACTATTATC-GATTCGTGTAGGTTCAACCCTAATAG
*
66626997 GTAACCA
1 GTGACCA
66627004 GGAACTATGA
Statistics
Matches: 87, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
45 34 0.39
46 53 0.61
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (45 bp):
GTGACCAAGCACTATTATCGATTCGTGTAGGTTCAACCCTAATAG
Found at i:66629451 original size:27 final size:28
Alignment explanation
Indices: 66629407--66629463 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
66629397 TTGTGTCATG
* *
66629407 TGAATTTGAATGGCAAATTATTGTTACA
1 TGAATTTGAATGGCAAATTACTATTACA
**
66629435 TGAA-TTGAATGTTAAATTACTATTACA
1 TGAATTTGAATGGCAAATTACTATTACA
66629462 TG
1 TG
66629464 GGTTGTATGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.40
Consensus pattern (28 bp):
TGAATTTGAATGGCAAATTACTATTACA
Found at i:66629789 original size:49 final size:49
Alignment explanation
Indices: 66629717--66629942 Score: 242
Period size: 49 Copynumber: 4.8 Consensus size: 49
66629707 TGAGGTCACG
* *
66629717 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
* * * *
66629766 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCTGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT-GGTCGCA
*
66629817 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAG---A----T-G--
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
* * *
66629856 -GT-TAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
**
66629903 TGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA
66629943 CATTGTCTAC
Statistics
Matches: 147, Mismatches: 16, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
37 30 0.20
38 2 0.01
40 1 0.01
42 1 0.01
44 1 0.01
45 1 0.01
48 3 0.02
49 68 0.46
50 2 0.01
51 38 0.26
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCGCA
Found at i:66629794 original size:26 final size:26
Alignment explanation
Indices: 66629765--66629848 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
66629755 AATTGGTCGC
66629765 ATGTGTAGTACTAAGTGCAGGCTACT
1 ATGTGTAGTACTAAGTGCAGGCTACT
* * * *
66629791 ATGTGTACCTGA-TAACTTC--GATCAC-
1 ATGTGTA-GT-ACTAAGTGCAGGCT-ACT
*
66629816 GTGTGTAGTACTAAGTGCAGGCTACT
1 ATGTGTAGTACTAAGTGCAGGCTACT
66629842 ATGTGTA
1 ATGTGTA
66629849 TCAGATGGTT
Statistics
Matches: 41, Mismatches: 10, Indels: 14
0.63 0.15 0.22
Matches are distributed among these distances:
23 1 0.02
24 6 0.15
25 10 0.24
26 17 0.41
27 6 0.15
28 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
ATGTGTAGTACTAAGTGCAGGCTACT
Found at i:66629879 original size:88 final size:86
Alignment explanation
Indices: 66629770--66629930 Score: 250
Period size: 88 Copynumber: 1.8 Consensus size: 86
66629760 GTCGCATGTG
* * *
66629770 TAGTACTAAGTGCAGGCTACTATGTGTACCTGATAACTTCGATCACGTGTGTAGTACTAAGTGCA
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GATCACATGTGTAGTACTAAGTGCA
66629835 GGCTACTATGTGTATCAGATGGT
64 GGCTACTATGTGTATCAGATGGT
* * *
66629858 TAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCATGTGTAGTACTAAGTGCAGG
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGATCACATGTGTAGTACTAAGTGCAGG
66629923 CTACTATG
66 CTACTATG
66629931 CATACCAGAT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
86 32 0.48
87 2 0.03
88 33 0.49
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (86 bp):
TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGATCACATGTGTAGTACTAAGTGCAGG
CTACTATGTGTATCAGATGGT
Found at i:66629940 original size:86 final size:88
Alignment explanation
Indices: 66629770--66629940 Score: 247
Period size: 86 Copynumber: 2.0 Consensus size: 88
66629760 GTCGCATGTG
* * *
66629770 TAGTACTAAGTGCAGGCTACTATGTGTACCTGATAACTTCGATCACGTGTGTAGTACTAAGTGCA
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAACTTCGATCACATGTGTAGTACTAAGTGCA
** *
66629835 GGCTACTATGTGTATCAGATGGT
66 GGCTACTATGCATACCAGATGGT
* * *
66629858 TAGTACTAAGTGCAGGCTACTACGTGTATCGGATAA-TT-GGTCGCATGTGTAGTACTAAGTGCA
1 TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAACTTCGATCACATGTGTAGTACTAAGTGCA
66629921 GGCTACTATGCATACCAGAT
66 GGCTACTATGCATACCAGAT
66629941 AACATTGTCT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
86 39 0.53
87 2 0.03
88 33 0.45
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (88 bp):
TAGTACTAAGTGCAGGCTACTACGTGTACCGGATAACTTCGATCACATGTGTAGTACTAAGTGCA
GGCTACTATGCATACCAGATGGT
Found at i:66633494 original size:64 final size:64
Alignment explanation
Indices: 66633328--66633500 Score: 170
Period size: 68 Copynumber: 2.6 Consensus size: 64
66633318 TGGATGATAC
* * * *
66633328 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATCATGTGTACAAGAGAGCTACA
1 AGATA-TATGTAGCTAGGTCACATGTGT-GTACTAAGTGCACACCATGTGTACAAGAGACCTAC-
66633393 AG
63 AG
* * * * *
66633395 ACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGACCTA
1 AGA-TAT-ATGTAGCTAGGTCACATGTGTG-TACTAAGTGCACACCATGT-GTACAAGAGACCTA
66633459 C-G
62 CAG
*
66633461 GGATATATGTAGCTAGGTCACATGTGTAGTACTAAGTGCA
1 AGATATATGTAGCTAGGTCACATGTGT-GTACTAAGTGCA
66633501 GGCTACTACG
Statistics
Matches: 86, Mismatches: 15, Indels: 13
0.75 0.13 0.11
Matches are distributed among these distances:
64 28 0.33
65 4 0.05
66 2 0.02
67 4 0.05
68 47 0.55
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCACATGTGTGTACTAAGTGCACACCATGTGTACAAGAGACCTACAG
Found at i:66640398 original size:116 final size:117
Alignment explanation
Indices: 66640256--66640485 Score: 417
Period size: 116 Copynumber: 2.0 Consensus size: 117
66640246 AGAATAAGAG
*
66640256 TAAGAATTCCTAACAAGTTTTTGTACAATAGGTTCTGGATTTTAAGGTTTGAATGCCTTTGATTT
1 TAAGAATTCCTAACAAGTTTTTGTACAATAGGTTCTGGATTTTAAGGTTTGAATGCCTTCGATTT
66640321 AACCAACATATGGTTGTCACGCTTAATTGCAAGGACAATAGAGGTTCTGGTA
66 AACCAACATATGGTTGTCACGCTTAATTGCAAGGACAATAGAGGTTCTGGTA
*
66640373 TAAGAATTCCTAA-AAGTTTTTGTACAATGGGTTCTGGATTTTAAGGTTTGAATGCCTTCGATTT
1 TAAGAATTCCTAACAAGTTTTTGTACAATAGGTTCTGGATTTTAAGGTTTGAATGCCTTCGATTT
* *
66640437 AACCAATATATGGTTGTCACGCTTAGTTGCAAGGACAATAGAGGTTCTG
66 AACCAACATATGGTTGTCACGCTTAATTGCAAGGACAATAGAGGTTCTG
66640486 ACATTTGGAA
Statistics
Matches: 109, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
116 96 0.88
117 13 0.12
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.36
Consensus pattern (117 bp):
TAAGAATTCCTAACAAGTTTTTGTACAATAGGTTCTGGATTTTAAGGTTTGAATGCCTTCGATTT
AACCAACATATGGTTGTCACGCTTAATTGCAAGGACAATAGAGGTTCTGGTA
Found at i:66641237 original size:68 final size:68
Alignment explanation
Indices: 66641114--66641241 Score: 159
Period size: 68 Copynumber: 1.9 Consensus size: 68
66641104 TGATGTCCAC
* *
66641114 CAAGAGAGTAAACATGACATTATATAGTGTAAGACCATAGCTAGCCTATGGAAACATATGAAATT
1 CAAGAGAGTAAACATGACATCATATAGTGTAAGACCATAGCTAGCCTATGAAAACATATGAAATT
66641179 TGT
66 TGT
* * * * * **
66641182 CAAGATAGTAAATATGGCATCATATCA-TGTAAGACCATAGTTGGGTTATGAAAACATATG
1 CAAGAGAGTAAACATGACATCATAT-AGTGTAAGACCATAGCTAGCCTATGAAAACATATG
66641242 GAGTCTACCA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
68 49 0.98
69 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (68 bp):
CAAGAGAGTAAACATGACATCATATAGTGTAAGACCATAGCTAGCCTATGAAAACATATGAAATT
TGT
Found at i:66645543 original size:13 final size:14
Alignment explanation
Indices: 66645526--66645558 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
66645516 TTTCCCTTAC
66645526 CATTTGTTTTTTTT
1 CATTTGTTTTTTTT
*
66645540 -ATTTCTTTTTTTT
1 CATTTGTTTTTTTT
66645553 CATTTG
1 CATTTG
66645559 AGGGTAACCA
Statistics
Matches: 16, Mismatches: 2, Indels: 2
0.80 0.10 0.10
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.76
Consensus pattern (14 bp):
CATTTGTTTTTTTT
Found at i:66649891 original size:43 final size:43
Alignment explanation
Indices: 66649830--66649932 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
66649820 TGCATTTCAA
66649830 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
66649873 GCCCGCACACTTAGTGCCAATCTCACAATCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
66649916 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
66649933 TGAAAACCAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:66651835 original size:37 final size:37
Alignment explanation
Indices: 66651785--66651863 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
66651775 TTATTACGAA
* * *
66651785 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
66651822 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
66651859 GTCTT
1 GTCTT
66651864 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:66652132 original size:47 final size:47
Alignment explanation
Indices: 66651982--66652501 Score: 871
Period size: 47 Copynumber: 11.1 Consensus size: 47
66651972 CCCTTCGGGA
* * * * * * * *
66651982 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
66652029 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
66652075 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
66652122 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
66652169 CTTATCACATATATACACTTTCAAATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
66652216 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
66652263 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
66652310 CTTATCACATATATACACTTTCACATTCATCACATCGGCGATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
66652357 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
66652404 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
66652451 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
66652498 CTTA
1 CTTA
66652502 CTATCATTTC
Statistics
Matches: 450, Mismatches: 22, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
46 40 0.09
47 410 0.91
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:66656125 original size:19 final size:18
Alignment explanation
Indices: 66656076--66656119 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
66656066 AGTATAAGGG
66656076 CAAAATGGTATTTTTTCC
1 CAAAATGGTATTTTTTCC
66656094 CAAAATGGTATTTTTTCC
1 CAAAATGGTATTTTTTCC
66656112 CAAAATGG
1 CAAAATGG
66656120 GAATTTGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (18 bp):
CAAAATGGTATTTTTTCC
Found at i:66669105 original size:40 final size:40
Alignment explanation
Indices: 66669041--66669135 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 40
66669031 CTATCTCGGT
66669041 ATCGCACACTTAGTGCCTCATATAGCCAAAGCTA-TTCCA
1 ATCGCACACTTAGTGCCTCATATAGCCAAAGCTATTTCCA
** **
66669080 ATTCGCACACTTAGTG-CT-ATTTATAGCTGAAGCTATTTTGA
1 A-TCGCACACTTAGTGCCTCA--TATAGCCAAAGCTATTTCCA
66669121 ATCGCACACTTAGTG
1 ATCGCACACTTAGTG
66669136 TTGAACATGG
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
38 1 0.02
39 3 0.06
40 40 0.83
41 4 0.08
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCTCATATAGCCAAAGCTATTTCCA
Found at i:66679634 original size:80 final size:81
Alignment explanation
Indices: 66679528--66679692 Score: 269
Period size: 80 Copynumber: 2.0 Consensus size: 81
66679518 GGTTGTTTAA
* * *
66679528 ATGTTTAACTAATACAAAGAAGTATTACATGGTTGAATCGTAGTACG-AAAGACAACCTGTATTA
1 ATGTTAAACTAATACAAAGAAGTATTACATGGTTGAATCGTAGTACGAAAAGACAAACTATATTA
66679592 GTAGACTAACCTAAAC
66 GTAGACTAACCTAAAC
* *
66679608 ATGTTAAACTAATACCAAGCAGTATTACATGGTTGAATCGTAGTACGAAAAGACAAACTATATTA
1 ATGTTAAACTAATACAAAGAAGTATTACATGGTTGAATCGTAGTACGAAAAGACAAACTATATTA
*
66679673 GTAGACTAACCTAGAC
66 GTAGACTAACCTAAAC
66679689 ATGT
1 ATGT
66679693 CCTTAGTCTA
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 44 0.56
81 34 0.44
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.27
Consensus pattern (81 bp):
ATGTTAAACTAATACAAAGAAGTATTACATGGTTGAATCGTAGTACGAAAAGACAAACTATATTA
GTAGACTAACCTAAAC
Found at i:66682449 original size:30 final size:30
Alignment explanation
Indices: 66682408--66682479 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
66682398 TGTTGCCAAC
66682408 ATCGGCAGTCATCGGCTTCTATTGGACACA
1 ATCGGCAGTCATCGGCTTCTATTGGACACA
* *
66682438 ATCGGCTGTCATCGTCTTCTATTGGACACA
1 ATCGGCAGTCATCGGCTTCTATTGGACACA
**
66682468 ATCAACAGTCAT
1 ATCGGCAGTCAT
66682480 AGAATTCTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.29
Consensus pattern (30 bp):
ATCGGCAGTCATCGGCTTCTATTGGACACA
Found at i:66684470 original size:14 final size:15
Alignment explanation
Indices: 66684451--66684487 Score: 67
Period size: 14 Copynumber: 2.5 Consensus size: 15
66684441 GCACATACAA
66684451 GGTTCGCACATA-TG
1 GGTTCGCACATATTG
66684465 GGTTCGCACATATTG
1 GGTTCGCACATATTG
66684480 GGTTCGCA
1 GGTTCGCA
66684488 TACTAAACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.30
Consensus pattern (15 bp):
GGTTCGCACATATTG
Found at i:66684704 original size:28 final size:28
Alignment explanation
Indices: 66684673--66684727 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
66684663 TTTGCATGTA
*
66684673 AGGGCTTCGAATATGGGGGTTCACATAT
1 AGGGCTTCGAATATAGGGGTTCACATAT
* * *
66684701 AGGGGTTTGCATATAGGGGTTCACATA
1 AGGGCTTCGAATATAGGGGTTCACATA
66684728 CAAGAGGGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.25, C:0.13, G:0.33, T:0.29
Consensus pattern (28 bp):
AGGGCTTCGAATATAGGGGTTCACATAT
Found at i:66684705 original size:14 final size:14
Alignment explanation
Indices: 66684683--66684727 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
66684673 AGGGCTTCGA
*
66684683 ATATGGGGGTTCAC
1 ATATAGGGGTTCAC
**
66684697 ATATAGGGGTTTGC
1 ATATAGGGGTTCAC
66684711 ATATAGGGGTTCAC
1 ATATAGGGGTTCAC
66684725 ATA
1 ATA
66684728 CAAGAGGGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.27, C:0.11, G:0.31, T:0.31
Consensus pattern (14 bp):
ATATAGGGGTTCAC
Found at i:66684709 original size:43 final size:44
Alignment explanation
Indices: 66684615--66684728 Score: 142
Period size: 43 Copynumber: 2.6 Consensus size: 44
66684605 CGCGTGCAAT
*
66684615 GGGGTTTGCATGTAAGGGTTCAAATACGAGGGTGTTCACAGATT
1 GGGGTTTGCATGTAAGGGTTCAAATACGAGGGTGTTCACAGATA
* * *
66684659 GGGGTTTGCATGTAAGGGCTTCGAATATG-GGG-GTTCACATATA
1 GGGGTTTGCATGTAAGGG-TTCAAATACGAGGGTGTTCACAGATA
* * *
66684702 GGGGTTTGCATATAGGGGTTCACATAC
1 GGGGTTTGCATGTAAGGGTTCAAATAC
66684729 AAGAGGGTTC
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
42 6 0.10
43 25 0.42
44 21 0.35
45 8 0.13
ACGTcount: A:0.24, C:0.12, G:0.34, T:0.30
Consensus pattern (44 bp):
GGGGTTTGCATGTAAGGGTTCAAATACGAGGGTGTTCACAGATA
Found at i:66684821 original size:15 final size:15
Alignment explanation
Indices: 66684769--66684824 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
66684759 CAAGGGTTTC
66684769 ACATGGGGGTTCACCT
1 ACAT-GGGGTTCACCT
**
66684785 ACATGGTGGTTTCATAT
1 ACATGG-GG-TTCACCT
*
66684802 ACATGGGGCTCACCT
1 ACATGGGGTTCACCT
66684817 ACATGGGG
1 ACATGGGG
66684825 GTGTTCGTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
15 14 0.42
16 8 0.24
17 11 0.33
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.27
Consensus pattern (15 bp):
ACATGGGGTTCACCT
Found at i:66688531 original size:26 final size:26
Alignment explanation
Indices: 66688482--66688534 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
66688472 ACGTACAGGG
*
66688482 GACACACGGCTAGGCAACACACCCAT
1 GACACACGGCTAGACAACACACCCAT
*
66688508 GACACACGGCCTAGAC-ACATACCCAT
1 GACACACGG-CTAGACAACACACCCAT
66688534 G
1 G
66688535 TGTTTACCTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.34, C:0.38, G:0.19, T:0.09
Consensus pattern (26 bp):
GACACACGGCTAGACAACACACCCAT
Found at i:66689482 original size:29 final size:29
Alignment explanation
Indices: 66689440--66689497 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
66689430 TCGTCTCAAT
66689440 GCCAATGCCATGTCCTAGATATGGTCTTA
1 GCCAATGCCATGTCCTAGATATGGTCTTA
66689469 GCCAATGCCATGTCCTAGATATGGTCTTA
1 GCCAATGCCATGTCCTAGATATGGTCTTA
66689498 CACTGACTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (29 bp):
GCCAATGCCATGTCCTAGATATGGTCTTA
Found at i:66691009 original size:15 final size:15
Alignment explanation
Indices: 66690989--66691151 Score: 110
Period size: 15 Copynumber: 11.3 Consensus size: 15
66690979 CACGGTTTCA
66690989 CACATATAGGGTTTG
1 CACATATAGGGTTTG
*
66691004 CACATAT-GGGTTCG
1 CACATATAGGGTTTG
* *
66691018 TACCT-T-GGGTTTCG
1 CACATATAGGGTTT-G
**
66691032 CACACGTAGGGTTTG
1 CACATATAGGGTTTG
* *
66691047 CACATACAGGGTTCG
1 CACATATAGGGTTTG
*
66691062 CACATAT-GGGTTCG
1 CACATATAGGGTTTG
* *
66691076 TAC-T-TAGGGCTTG
1 CACATATAGGGTTTG
66691089 CACATAT-GGGTTTG
1 CACATATAGGGTTTG
*
66691103 CAC--CTAGGGTTTTG
1 CACATATAGGG-TTTG
* * * *
66691117 AACATGTACGGTTCG
1 CACATATAGGGTTTG
66691132 CACATATAGGGTTTG
1 CACATATAGGGTTTG
66691147 CACAT
1 CACAT
66691152 CTGGGCTTGT
Statistics
Matches: 112, Mismatches: 26, Indels: 20
0.71 0.16 0.13
Matches are distributed among these distances:
12 2 0.02
13 17 0.15
14 37 0.33
15 46 0.41
16 10 0.09
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (15 bp):
CACATATAGGGTTTG
Found at i:66691099 original size:85 final size:85
Alignment explanation
Indices: 66690995--66691156 Score: 216
Period size: 85 Copynumber: 1.9 Consensus size: 85
66690985 TTCACACATA
* * * * * *
66690995 TAGGGTTTGCACATATGGGTTCGTACCTTGGGTTTCGCACACGTAGGGTTTGCACATACAGGGTT
1 TAGGGCTTGCACATATGGGTTCGCACCTAGGGTTTCGAACACGTACGGTTCGCACATACAGGGTT
66691060 CGCACATATGGGTTCGTACT
66 CGCACATATGGGTTCGTACT
* * * *
66691080 TAGGGCTTGCACATATGGGTTTGCACCTAGGGTTTTGAACATGTACGGTTCGCACATATAGGGTT
1 TAGGGCTTGCACATATGGGTTCGCACCTAGGGTTTCGAACACGTACGGTTCGCACATACAGGGTT
* *
66691145 TGCACATCTGGG
66 CGCACATATGGG
66691157 CTTGTACCTA
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
85 65 1.00
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (85 bp):
TAGGGCTTGCACATATGGGTTCGCACCTAGGGTTTCGAACACGTACGGTTCGCACATACAGGGTT
CGCACATATGGGTTCGTACT
Found at i:66691178 original size:85 final size:85
Alignment explanation
Indices: 66691004--66691185 Score: 206
Period size: 85 Copynumber: 2.2 Consensus size: 85
66690994 ATAGGGTTTG
* * * * *
66691004 CACATATGGGTTCGTACCTTGGGTTTCGCACACGTAGGGTTTGCACATACAGGGTTCGCACATAT
1 CACATATGGGTTCGCACCTAGGGTTTCGAACACGTACGGTTCGCACATACAGGGTTCGCACATAT
* * **
66691069 GGGTTCGTACTTAGGGCTTG
66 GGGTTCGTACCTACGGCTCA
* * * * * *
66691089 CACATATGGGTTTGCACCTAGGGTTTTGAACATGTACGGTTCGCACATATAGGGTTTGCACATCT
1 CACATATGGGTTCGCACCTAGGGTTTCGAACACGTACGGTTCGCACATACAGGGTTCGCACATAT
66691154 GGGCTT-GTACCTACGGCTCA
66 GGG-TTCGTACCTACGGCTCA
66691174 CACATA-GGGTTC
1 CACATATGGGTTC
66691186 CACATAGTAA
Statistics
Matches: 80, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
84 5 0.06
85 73 0.91
86 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.30
Consensus pattern (85 bp):
CACATATGGGTTCGCACCTAGGGTTTCGAACACGTACGGTTCGCACATACAGGGTTCGCACATAT
GGGTTCGTACCTACGGCTCA
Found at i:66691367 original size:18 final size:17
Alignment explanation
Indices: 66691333--66691380 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
66691323 GGTTCCCATG
*
66691333 ATATATGAGGCTTGCATA
1 ATATAT-AGGGTTGCATA
*
66691351 ATATATAGGGTTAGCATG
1 ATATATAGGGTT-GCATA
*
66691369 ATAAATAGGGTT
1 ATATATAGGGTT
66691381 CACATACTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 5 0.19
18 21 0.81
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.33
Consensus pattern (17 bp):
ATATATAGGGTTGCATA
Found at i:66691534 original size:80 final size:80
Alignment explanation
Indices: 66691437--66691601 Score: 208
Period size: 80 Copynumber: 2.1 Consensus size: 80
66691427 AATCATGAGG
* * * **
66691437 GTTCGCATATGTGTATATACATGCTACGGTTCG-CTTATCCACTTACAACA-GGATTCGCATGTA
1 GTTCGCATATATATATATACAAGCTACAATTCGTC-TATCCACTTACAACAGGGATTC-CATGTA
*
66691500 TATCAATGTATGTTGGA
64 TATCAATGTATGTAGGA
* * *
66691517 GTTCGCATATATATATATATAAGCTACAATTTGTCTATCCACTTACAACAGGGTTTCCATGTATA
1 GTTCGCATATATATATATACAAGCTACAATTCGTCTATCCACTTACAACAGGGATTCCATGTATA
*
66691582 TCAATGTATGTAGGG
66 TCAATGTATGTAGGA
66691597 GTTCG
1 GTTCG
66691602 AATAGCATGG
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 67 0.92
81 6 0.08
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (80 bp):
GTTCGCATATATATATATACAAGCTACAATTCGTCTATCCACTTACAACAGGGATTCCATGTATA
TCAATGTATGTAGGA
Found at i:66694618 original size:11 final size:11
Alignment explanation
Indices: 66694604--66694655 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
66694594 TCTTTCAATA
66694604 TTCTCTCAAAT
1 TTCTCTCAAAT
66694615 TTCTCTCAAA-
1 TTCTCTCAAAT
66694625 -TCTCTCAAAT
1 TTCTCTCAAAT
*
66694635 TTCTCTTAAAT
1 TTCTCTCAAAT
*
66694646 TCCTCTCAAA
1 TTCTCTCAAA
66694656 ACTCTCGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 9 0.25
11 27 0.75
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:66694630 original size:20 final size:21
Alignment explanation
Indices: 66694598--66694655 Score: 82
Period size: 20 Copynumber: 2.7 Consensus size: 21
66694588 CTTCAATCTT
66694598 TCAATATTCTCTCAAATTTCTC
1 TCAA-ATTCTCTCAAATTTCTC
66694620 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTTCTC
*
66694640 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
66694656 ACTCTCGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 19 0.58
21 2 0.06
22 12 0.36
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTTCTC
Found at i:66694711 original size:16 final size:15
Alignment explanation
Indices: 66694682--66694712 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
66694672 TCAAAAAAGC
*
66694682 TCTAATTTTATTTTT
1 TCTAAATTTATTTTT
66694697 TCTAAATTTATTTTT
1 TCTAAATTTATTTTT
66694712 T
1 T
66694713 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTAAATTTATTTTT
Found at i:66695787 original size:7 final size:7
Alignment explanation
Indices: 66695775--66695808 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
66695765 TAGTGGATTC
66695775 GTATTTA
1 GTATTTA
66695782 GTATTTA
1 GTATTTA
66695789 GTATTTA
1 GTATTTA
66695796 GTATTTA
1 GTATTTA
66695803 GTATTT
1 GTATTT
66695809 TTTATTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (7 bp):
GTATTTA
Found at i:66697056 original size:116 final size:116
Alignment explanation
Indices: 66696851--66697584 Score: 1315
Period size: 116 Copynumber: 6.3 Consensus size: 116
66696841 TATTTGTACA
*
66696851 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAAGGTTGTTTTAAATAAAGTAA
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGAT-AAAAGGTTGTTTTAAATAAAGTAA
66696916 TTGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
65 TTGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66696968 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
66697033 TATAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66697084 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* * *
66697149 TGTAACTTAGTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGT
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66697200 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
* *
66697265 TGTAATTTACTTTTATATTTTTAATAAAATAGAAATTATTTTAAATAAGGT
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
66697316 AACATTTTGAGTATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
66697381 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
* *
66697432 AACATTTTGAATATTTTTATATTATTTCATGTGATAATATATAAAAGGTTGTTTTAAATAAAGTA
1 AACATTTTGAATATTTTTATATTATTTCATGT-A-ATTAGATAAAAGGTTGTTTTAAATAAAGTA
* * *
66697497 ATTATAATTTACTTTTATATTTTTAATAAAATGAAAATTATTTTAAATAAAGC
64 ATTGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
66697550 AATATTTTGAATATTTTTATATTATTTCATGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAAT
66697585 AAAATATAAA
Statistics
Matches: 595, Mismatches: 20, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
116 445 0.75
117 41 0.07
118 109 0.18
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:66700833 original size:126 final size:126
Alignment explanation
Indices: 66700600--66701012 Score: 614
Period size: 126 Copynumber: 3.3 Consensus size: 126
66700590 GCCTAAGTTA
* * * * * *
66700600 TTTCAGAAACCACTGTAGCAAAAGAGTGTCCATGTGGGAGCTTCTTTCAATACTGTTGTTGAAAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* **
66700665 TGCATCCTGCTTAAAGCGTTTTTGACACTATTTATGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * * *
66700726 TTCCAGAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTC-TTCTAGTAATTTTGCCGAAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTC-AGTACTTTTGCTGAAA
*
66700790 ATGCATCCTGCTTGAAGCATTTTT-ACCACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
65 ATGCATCCTGCTTGAAGCGTTTTTGA-CACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * *
66700852 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
* *
66700917 TGCATCCTACTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAATTTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
*
66700978 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
1 TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGT
66701013 AGAAGCTTTT
Statistics
Matches: 259, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
125 4 0.02
126 251 0.97
127 4 0.02
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (126 bp):
TTTCAGAGACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
Found at i:66701237 original size:96 final size:98
Alignment explanation
Indices: 66701063--66701295 Score: 273
Period size: 96 Copynumber: 2.4 Consensus size: 98
66701053 CCTAAACGCC
* * * * *
66701063 AAACCCTAATTTATTTGATTTTTTTCTTAAATACCCTAAAACCCTAAAATCCTAATCTAATTTTT
1 AAACCCTAATTTATTTAATTTTTTCCTTAAAAACCATAAAACACTAAAATCCTAATCTAATTTTT
* * * **
66701128 TTTAATTTATAATTAATTTACTCAAGTAAC-CTT
66 TTAAAATTATAATTAATTTAATCAACAAACAC-T
*
66701161 AAACCTTAATTTATTTAATTTTTTCCTTAAAAACCAT-AAACACT-AAA-CCATAATCTAA-TTT
1 AAACCCTAATTTATTTAATTTTTTCCTTAAAAACCATAAAACACTAAAATCC-TAATCTAATTTT
*
66701222 TTTAAAATTAGTAATTAATTTAATTAACAAACACT
65 TTTAAAATTA-TAATTAATTTAATCAACAAACACT
*
66701257 AAACCCTAATTTATTTAA-TTTTTCCTT-AAAACCCTAAAA
1 AAACCCTAATTTATTTAATTTTTTCCTTAAAAACCATAAAA
66701296 TTTAAAAACC
Statistics
Matches: 117, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
94 7 0.06
95 25 0.21
96 46 0.39
97 7 0.06
98 32 0.27
ACGTcount: A:0.40, C:0.17, G:0.01, T:0.42
Consensus pattern (98 bp):
AAACCCTAATTTATTTAATTTTTTCCTTAAAAACCATAAAACACTAAAATCCTAATCTAATTTTT
TTAAAATTATAATTAATTTAATCAACAAACACT
Found at i:66701655 original size:22 final size:21
Alignment explanation
Indices: 66701611--66701658 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 21
66701601 TTTTGAAAAT
66701611 ATTTTAAATTATTATGTTTAA
1 ATTTTAAATTATTATGTTTAA
66701632 ATTTTAAATTAAATTAT-TTTAA
1 ATTTTAAATT--ATTATGTTTAA
66701654 ATTTT
1 ATTTT
66701659 TTTATGTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 10 0.40
22 10 0.40
23 5 0.20
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTTTAAATTATTATGTTTAA
Done.