Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 211 of 325
Found at i:68569148 original size:48 final size:48
Alignment explanation
Indices: 68569093--68569422 Score: 348
Period size: 48 Copynumber: 6.9 Consensus size: 48
68569083 GTGAATTACC
*
68569093 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCT
* * * * *
68569141 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-ATCGAGGCT
* * *
68569189 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-ATCGAGGCT
* * * *
68569237 GATGCCATGTTCCAAACATGCTCTTACACTAG-TGCACATATCAATG-T
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCT-CACATATCGAGGCT
* * * * * *
68569284 CGATGCCATGTCCCAAATATGGTCTTACACTGGCTCTCACAAC-ATCGCT
1 -GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGA-GGCT
* *
68569333 GATGCCATGTTCCAAACATGGTCTTACACTAGCT-ATCATATCGTGGCT
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCA-CATATCGAGGCT
* * *
68569381 AATGCCATGTTCCAAACATGGTCTTAAACTGGCACACATATC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATC
68569423 ACCCAAATGT
Statistics
Matches: 235, Mismatches: 37, Indels: 20
0.80 0.13 0.07
Matches are distributed among these distances:
47 4 0.02
48 227 0.97
49 4 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.28
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCT
Found at i:68569262 original size:96 final size:96
Alignment explanation
Indices: 68569093--68569413 Score: 393
Period size: 96 Copynumber: 3.3 Consensus size: 96
68569083 GTGAATTACC
* * * * *
68569093 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT-GTCGAGGCTGATGCCATGTCCCAGA
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCCATGTTCCAAA
68569157 CATGGTCTTACACTAGCTCTCATAATGTGGCT
65 CATGGTCTTACACTAGCTCTCATAATGTGGCT
*
68569189 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTTCCAAAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTTCCAAAC
* *
68569254 ATGCTCTTACACTAG-TGCACATATCAATGT--C-
66 ATGGTCTTACACTAGCT-CTC--AT-AATGTGGCT
* * * ** *
68569285 GATGCCATGTCCCAAATATGGTCTTACACTGGCTCTCACAACATCGCTGATGCCATGTTCCAAAC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTTCCAAAC
*
68569350 ATGGTCTTACACTAGCTATCAT-ATCGTGGCT
66 ATGGTCTTACACTAGCTCTCATAAT-GTGGCT
* *
68569381 AATGCCATGTTCCAAACATGGTCTTAAACTGGC
1 GATGCCATGTTCCAAACATGGTCTTACACTGGC
68569414 ACACATATCA
Statistics
Matches: 193, Mismatches: 22, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
92 2 0.01
93 2 0.01
94 2 0.01
95 2 0.01
96 175 0.91
97 3 0.02
98 2 0.01
99 5 0.03
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (96 bp):
GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCCATGTTCCAAAC
ATGGTCTTACACTAGCTCTCATAATGTGGCT
Found at i:68569351 original size:144 final size:144
Alignment explanation
Indices: 68569091--68569423 Score: 447
Period size: 144 Copynumber: 2.3 Consensus size: 144
68569081 GGGTGAATTA
* * * *
68569091 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCAG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCTGATGCCATGTCCCAA
* ** * *
68569156 ACATGGTCTTACACTAGCTCTCATAATGTGGCTGATGCCATGTTCCAAACATGGTCTTACACTGG
66 ACATGGTCTTACACTAGCTCTCACAACATCGCTGATGCCATGTTCCAAACATGGTCTTACACTAG
*
68569221 CTCTCATAAT-GTGG
131 CTATCAT-ATCGTGG
* *
68569235 CCGATGCCATGTTCCAAACATGCTCTTACACTAG-TGCACATATCAATG-TCGATGCCATGTCCC
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCT-CACATATCAAGGCT-GATGCCATGTCCC
* *
68569298 AAATATGGTCTTACACTGGCTCTCACAACATCGCTGATGCCATGTTCCAAACATGGTCTTACACT
64 AAACATGGTCTTACACTAGCTCTCACAACATCGCTGATGCCATGTTCCAAACATGGTCTTACACT
68569363 AGCTATCATATCGTGG
129 AGCTATCATATCGTGG
** * * *
68569379 CTAATGCCATGTTCCAAACATGGTCTTAAACTGGCACACATATCA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCA
68569424 CCCAAATGTC
Statistics
Matches: 165, Mismatches: 20, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
143 4 0.02
144 161 0.98
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (144 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCAAGGCTGATGCCATGTCCCAA
ACATGGTCTTACACTAGCTCTCACAACATCGCTGATGCCATGTTCCAAACATGGTCTTACACTAG
CTATCATATCGTGG
Found at i:68572265 original size:20 final size:18
Alignment explanation
Indices: 68572235--68572278 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
68572225 TTTGTAACGT
*
68572235 TTGTAAAATAAGTTGTAAA
1 TTGTGAAATAAGTTG-AAA
*
68572254 TGTGTGAAATAATTTGAAA
1 T-TGTGAAATAAGTTGAAA
68572273 TTGTGA
1 TTGTGA
68572279 GTTACTATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 5 0.23
19 5 0.23
20 12 0.55
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (18 bp):
TTGTGAAATAAGTTGAAA
Found at i:68572968 original size:46 final size:46
Alignment explanation
Indices: 68572912--68573078 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 46
68572902 TATGTGTGCT
68572912 AGTGTAAGACATGTCTGGGACATGCATCGACCACATATTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATATTGAGAGCC
* * * * * *
68572958 AGAGTAAGACATGTTTGGGACATGCATCGGCCTCGAAATAT-ACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATAT-TGA-GAGCC
* * ** *
68573006 AGTGTAAGACATGTCTGGG-CATGTATC-AGCAC-TGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAT-A-TTGAGAGCC
68573051 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
68573079 AGTCTCGAGA
Statistics
Matches: 96, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
45 23 0.24
46 40 0.42
47 11 0.11
48 22 0.23
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACATATTGAGAGCC
Found at i:68573017 original size:48 final size:47
Alignment explanation
Indices: 68572912--68573225 Score: 194
Period size: 49 Copynumber: 6.6 Consensus size: 47
68572902 TATGTGTGCT
* * *
68572912 AGTGTAAGACATGTCTGGGACATGCATC-GAC-C-ACATATTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATA-T-AAAGCC
* * * *
68572958 AGAGTAAGACATGTTTGGGACATGCATCGGCCTCGAAATATACAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATA-AAGCC
* ** * *
68573006 AGTGTAAGACATGTCTGGG-CATGTATCAGCACT-GAGA-CGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-CTCGAGATATAAAGCC
* *
68573051 AGTGTAAGACATGTCTGGGACATGCATCAGTCTCGAGATATACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATA-AAGCC
* * * * * *
68573099 AGTGTAAGACCTATCTGGGACATGGCA-CCGACACT-GATAGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCAG-C-CTCGAGATAT-AAAGCC
* * ** * * * * *
68573148 AATGTAAAATTTGTTTGGGACACGATATCAGCCTCAAGATATAAAAGTC
1 AGTGTAAGACATGTCTGGGACATG-CATCAGCCTCGAGATAT-AAAGCC
*
68573197 AGTGTAAGACCTGTCTGGGACATGGCATC
1 AGTGTAAGACATGTCTGGGACAT-GCATC
68573226 GATTTTGATG
Statistics
Matches: 202, Mismatches: 49, Indels: 31
0.72 0.17 0.11
Matches are distributed among these distances:
45 24 0.12
46 40 0.20
47 16 0.08
48 55 0.27
49 61 0.30
50 6 0.03
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATAAAGCC
Found at i:68573072 original size:93 final size:94
Alignment explanation
Indices: 68572912--68573227 Score: 284
Period size: 93 Copynumber: 3.3 Consensus size: 94
68572902 TATGTGTGCT
** *
68572912 AGTGTAAGACATGTCTGGGACATGCATCGACCACATATTGAGAGCCAGAGTAAGACATGTTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACATAACGAGAGCCAGAGTAAGACATGTCTGGG
*
68572977 ACATGCATCGGCCTCGAAATATACAAGCC
66 ACATGCATCAGCCTCGAAATATACAAGCC
* * * *
68573006 AGTGTAAGACATGTCTGGG-CATGTATC-AGCAC-TGAGACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAT-A-ACGAGAGCCAGAGTAAGACATGTCTG
* * *
68573068 GGACATGCATCAGTCTCGAGATATACAAGCT
64 GGACATGCATCAGCCTCGAAATATACAAGCC
* * * * * **
68573099 AGTGTAAGACCTATCTGGGACATGGCACCGA-CACTGATAGATGAGAGCCA-ATGTAAAATTTGT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACCAC--ATA-ACGAGAGCCAGA-GTAAGACATGT
* * * * *
68573162 TTGGGACACGATATCAGCCTC-AAGATATAAAAGTC
61 CTGGGACATG-CATCAGCCTCGAA-ATATACAAGCC
*
68573197 AGTGTAAGACCTGTCTGGGACATGGCATCGA
1 AGTGTAAGACATGTCTGGGACAT-GCATCGA
68573228 TTTTGATGTG
Statistics
Matches: 180, Mismatches: 31, Indels: 18
0.79 0.14 0.08
Matches are distributed among these distances:
91 1 0.01
92 5 0.03
93 72 0.40
94 22 0.12
95 6 0.03
96 1 0.01
97 27 0.15
98 46 0.26
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACATAACGAGAGCCAGAGTAAGACATGTCTGGG
ACATGCATCAGCCTCGAAATATACAAGCC
Found at i:68591274 original size:48 final size:48
Alignment explanation
Indices: 68591201--68591580 Score: 365
Period size: 48 Copynumber: 7.9 Consensus size: 48
68591191 TTTAAAATAA
* *
68591201 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
* * * * * * *
68591249 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTC-ATTG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGA-GG
* * * * *
68591297 CCGATGCCATGTCCCAGAGATGGTCTTACACTAGCTCTCATAAT-GTGG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCGAGG
* *
68591345 CCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATCGAGG
* * * * * * *
68591393 CTGATGCCATGTTCCAAACATTGTCTTACACTAGCGCACATATCAATG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
** * * * *
68591441 CCGATGCCATG-TCCTAGGCATGGGCTTACACTGGCTCTCACAAC-ATCG
1 CCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCTCATATCGA-GG
* * *
68591489 CCGATGTCATGTTCTAAACATGGTCTTACACTGGCTCTCATATCGTGG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
* * *
68591537 TCGATGCCATGTTCCAAACATGGTCTTACACTGGCACACATATC
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATC
68591581 ACCCAAATGT
Statistics
Matches: 271, Mismatches: 53, Indels: 16
0.80 0.16 0.05
Matches are distributed among these distances:
47 7 0.03
48 261 0.96
49 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGAGG
Found at i:68591469 original size:144 final size:144
Alignment explanation
Indices: 68591201--68591581 Score: 500
Period size: 144 Copynumber: 2.6 Consensus size: 144
68591191 TTTAAAATAA
* * * * * *
68591201 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCCAG
1 CCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTTCCAA
* * * * * *
68591266 ACATGGTCTTACACTAGCTCTCGTCTCATTGCCGATGCCATGTCCCAGAGATGGTCTTACACTAG
66 ACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGAGATGGGCTTACACTAG
* ** *
68591331 CTCTCATAATGTGG
131 CTCTCACAACATCG
68591345 CCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATGCCATGTTCCA
1 CCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCTCAT-ATCGTGGCTGATGCCATGTTCCA
* * *
68591409 AACATTGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCTAG-GCATGGGCTTACACT
65 AACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGAG-ATGGGCTTACACT
*
68591473 GGCTCTCACAACATCG
129 AGCTCTCACAACATCG
*
68591489 CCGATGTCATG-TTCTAAACATGGTCTTACACTGGCTCTCATATCGTGG-TCGATGCCATGTTCC
1 CCGATGCCATGTTTC-AAACATGGTCTTACACTGGCTCTCATATCGTGGCT-GATGCCATGTTCC
*
68591552 AAACATGGTCTTACACTGGCACACATATCA
64 AAACATGGTCTTACACTAGCACACATATCA
68591582 CCCAAATGTC
Statistics
Matches: 209, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
143 7 0.03
144 201 0.96
145 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (144 bp):
CCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCTCATATCGTGGCTGATGCCATGTTCCAA
ACATGGTCTTACACTAGCACACATATCAATGCCGATGCCATGTCCCAGAGATGGGCTTACACTAG
CTCTCACAACATCG
Found at i:68594349 original size:18 final size:17
Alignment explanation
Indices: 68594309--68594350 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
68594299 ATCATTTCAT
68594309 TTCTTTATCTTTCTTTC
1 TTCTTTATCTTTCTTTC
*
68594326 TCTCTTTATCTTTGTATTC
1 T-TCTTTATCTTTCT-TTC
68594345 TTCTTT
1 TTCTTT
68594351 TAGTTTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 17 0.77
19 4 0.18
ACGTcount: A:0.07, C:0.21, G:0.02, T:0.69
Consensus pattern (17 bp):
TTCTTTATCTTTCTTTC
Found at i:68597975 original size:273 final size:273
Alignment explanation
Indices: 68597488--68598033 Score: 1044
Period size: 273 Copynumber: 2.0 Consensus size: 273
68597478 GAATGAGTTT
68597488 CGAATTCCTTGGAACACACAAACGACTTCTAAACCTCAAACAGTCATCATCATCAATCTGAACTC
1 CGAATTCCTTGGAACACACAAACGACTTCTAAACCTCAAACAGTCATCATCATCAATCTGAACTC
68597553 CGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTCATCATCGACTTCTGAGCTTC
66 CGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTCATCATCGACTTCTGAGCTTC
68597618 ACGAATTTGGTGAGTCATAATGGTTTAGCTTTTAATTCAGCTACTAACACATTGTCTGGTAGAAC
131 ACGAATTTGGTGAGTCATAATGGTTTAGCTTTTAATTCAGCTACTAACACATTGTCTGGTAGAAC
68597683 AGACAAATGCACATTCATCGCTCGTAAAGCAAACAATGACTTCCGGCTTAAGGCGTCCGCAACCA
196 AGACAAATGCACATTCATCGCTCGTAAAGCAAACAATGACTTCCGGCTTAAGGCGTCCGCAACCA
68597748 -GTTAGCCTTTCC
261 CGTTAGCCTTTCC
68597760 CGAATTCCTT-GAACACACAAACGACTT-TAAACCTCAAACAGTCATCATCATCAATCTGAAACT
1 CGAATTCCTTGGAACACACAAACGACTTCTAAACCTCAAACAGTCATCATCATCAATCTG-AACT
68597823 CCGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTCATCATCGACTTTCTGAGCT
65 CCGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTCATCATCGAC-TTCTGAGCT
68597888 TCACGAATTTGGTGAGTCAATAATGGTTTAGCTTTTAATTCAGCTACTAACACATTGTCTGGTAG
129 TCACGAATTTGGTGAGTC-ATAATGGTTTAGCTTTTAATTCAGCTACTAACACATTGTCTGGTAG
68597953 AACAGACAAATGCACATTCATCGCTCGTAAAGCAAACAATGACTTCCGGCTTAAGGCGTCCGCAA
193 AACAGACAAATGCACATTCATCGCTCGTAAAGCAAACAATGACTTCCGGCTTAAGGCGTCCGCAA
68598018 CCACGTTAGCCTTTCC
258 CCACGTTAGCCTTTCC
68598034 GGGTGGTAAT
Statistics
Matches: 270, Mismatches: 0, Indels: 6
0.98 0.00 0.02
Matches are distributed among these distances:
270 31 0.11
271 76 0.28
272 37 0.14
273 114 0.42
274 12 0.04
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (273 bp):
CGAATTCCTTGGAACACACAAACGACTTCTAAACCTCAAACAGTCATCATCATCAATCTGAACTC
CGATTCCTTGTTCGGAACACACTCAGCTCGTTTTGCAACCAATTCATCATCGACTTCTGAGCTTC
ACGAATTTGGTGAGTCATAATGGTTTAGCTTTTAATTCAGCTACTAACACATTGTCTGGTAGAAC
AGACAAATGCACATTCATCGCTCGTAAAGCAAACAATGACTTCCGGCTTAAGGCGTCCGCAACCA
CGTTAGCCTTTCC
Found at i:68602801 original size:40 final size:40
Alignment explanation
Indices: 68602625--68602847 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
68602615 TCCTCGTTCA
* * * * *
68602625 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
68602664 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
68602704 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
68602744 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
68602784 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
68602824 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
68602848 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:68610685 original size:40 final size:40
Alignment explanation
Indices: 68610509--68610731 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
68610499 TCCTCGTTCA
* * * * *
68610509 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
68610548 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
68610588 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
68610628 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
68610668 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
68610708 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
68610732 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:68629431 original size:27 final size:26
Alignment explanation
Indices: 68629396--68629446 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
68629386 AGCATGCATA
* *
68629396 AAACATATCTTTAAAATCATAGTTTAT
1 AAACATATCTTGAAAA-CAGAGTTTAT
68629423 AAACATATCTTGAAAACAGAGTTT
1 AAACATATCTTGAAAACAGAGTTT
68629447 CAGAACTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.35
Consensus pattern (26 bp):
AAACATATCTTGAAAACAGAGTTTAT
Found at i:68630909 original size:19 final size:17
Alignment explanation
Indices: 68630868--68630911 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 17
68630858 ATTCTTGTCA
68630868 AAAAATAATTAAATATT
1 AAAAATAATTAAATATT
68630885 ATAAAATAATTAAATTATGT
1 A-AAAATAATTAAA-TAT-T
68630905 AAAAATA
1 AAAAATA
68630912 TGAACATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 1 0.04
18 12 0.50
19 9 0.38
20 2 0.08
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
AAAAATAATTAAATATT
Found at i:68635455 original size:50 final size:47
Alignment explanation
Indices: 68635329--68635455 Score: 150
Period size: 47 Copynumber: 2.6 Consensus size: 47
68635319 GTATAGTGTC
**
68635329 GATGCCATGTCCCAGACATGGTCTTACACTGGCTAATCCATCAAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAACTAATCCATCAAGTT
* * *
68635376 GATACCATGTCCCAGACATGGTCTTACACTAACT-CTCACAT-ATCCGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAACTAATC-CATCA--AGT--T
68635426 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
68635456 GACACATTTT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
46 3 0.04
47 34 0.49
48 2 0.03
50 30 0.43
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAACTAATCCATCAAGTT
Found at i:68638592 original size:32 final size:32
Alignment explanation
Indices: 68638551--68638618 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
68638541 AGTCAGCAAG
68638551 ACTTGGTCCAAATTAGAAATTTTTCAATTTCT
1 ACTTGGTCCAAATTAGAAATTTTTCAATTTCT
68638583 ACTTGGTCCAAATTAGAAATTTTTCAATTTCT
1 ACTTGGTCCAAATTAGAAATTTTTCAATTTCT
68638615 ACTT
1 ACTT
68638619 TAAACTTCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.31, C:0.16, G:0.09, T:0.44
Consensus pattern (32 bp):
ACTTGGTCCAAATTAGAAATTTTTCAATTTCT
Found at i:68645845 original size:47 final size:47
Alignment explanation
Indices: 68645776--68645944 Score: 311
Period size: 47 Copynumber: 3.6 Consensus size: 47
68645766 GGTATAGTGC
*
68645776 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGT
68645823 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGT
68645870 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGT
* *
68645917 CAATGCCATGTCCCAGACATGGTCTTAC
1 CGATGCCATGTCCCAAACATGGTCTTAC
68645945 GCTAACACAT
Statistics
Matches: 119, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 119 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCAAGT
Found at i:68646112 original size:47 final size:48
Alignment explanation
Indices: 68645771--68646131 Score: 305
Period size: 47 Copynumber: 7.8 Consensus size: 48
68645761 CACAGGGTAT
68645771 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCA
1 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CATCA
*
68645820 AGT--CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCA
1 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CATCA
*
68645867 AGT--CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATCCATCA
1 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CATCA
* * ** * ** **
68645914 AGT--CAATGCCATGTCCCAGACATGGTCTTACGCTAACACATTTTTT
1 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCA
* *
68645960 A--GCCGA--CACATGCCCCAGACAT-GTCTTACACTAGCTC-TCAT-A
1 AGTGCCGATGC-CATGTCCCAGACATGGTCTTACACTGGCTCATCATCA
** *
68646002 ATGTGGCCGATG-CATGTCCCAGACAT-GTCTTACACAAGCTCTTGTC-TCA
1 A-GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC--ATCATCA
** *
68646051 A-TGCTAATGCCATGTCCCAGACATGATCTTACACTGGCTC-TCAT-A
1 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCA
*
68646096 ATGTGGCCGATG-CATGTCCTAGACAT-GTCTTACACT
1 A-GT-GCCGATGCCATGTCCCAGACATGGTCTTACACT
68646132 AGCACACAAA
Statistics
Matches: 263, Mismatches: 30, Indels: 41
0.79 0.09 0.12
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 13 0.05
45 17 0.06
46 51 0.19
47 154 0.59
48 18 0.07
49 7 0.03
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCA
Found at i:68649155 original size:48 final size:48
Alignment explanation
Indices: 68649073--68649235 Score: 188
Period size: 48 Copynumber: 3.4 Consensus size: 48
68649063 ATACTAGGGT
*
68649073 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGA
* * * **
68649121 TATGAGAGCTAGTGTAAGACCATTTCTTGG-ACATGGCATC-AGCCTCAA
1 TATGAGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGA-CATTGA
* *
68649169 TATGTA-AGCCAGTGTAAGACCATGTTTGGAACATGGCAACGGCATTGA
1 TATG-AGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGA
* *
68649217 TAGGAGAGCTAGTGTAAGA
1 TATGAGAGCCAGTGTAAGA
68649236 AGAAGTTTGA
Statistics
Matches: 94, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
47 6 0.06
48 83 0.88
49 5 0.05
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.26
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGA
Found at i:68650280 original size:35 final size:34
Alignment explanation
Indices: 68650199--68650287 Score: 88
Period size: 35 Copynumber: 2.6 Consensus size: 34
68650189 TACTAGCTTG
* * * *
68650199 TTGGAGCGACATCGTGAAAACGGTATTCAGGCTC
1 TTGGAGCGACACCATGAAAACGATATGCAGGCTC
* * *
68650233 TTCAGAGTGACACCATGTAAACGATATGCAGGCTC
1 TT-GGAGCGACACCATGAAAACGATATGCAGGCTC
*
68650268 TATGGAGCGACACCACGAAA
1 T-TGGAGCGACACCATGAAA
68650288 GGGGCTTACT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
34 2 0.05
35 39 0.93
36 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.20
Consensus pattern (34 bp):
TTGGAGCGACACCATGAAAACGATATGCAGGCTC
Found at i:68651695 original size:18 final size:18
Alignment explanation
Indices: 68651668--68651706 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
68651658 TGCTTCTAAG
*
68651668 AAGCGCTTTTGGGACAAA
1 AAGCGCTTTTGAGACAAA
* *
68651686 AAGCGGTTTTGAGAGAAA
1 AAGCGCTTTTGAGACAAA
68651704 AAG
1 AAG
68651707 TGTTTTTCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.31, T:0.21
Consensus pattern (18 bp):
AAGCGCTTTTGAGACAAA
Found at i:68655318 original size:42 final size:42
Alignment explanation
Indices: 68655259--68655340 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
68655249 TTTTGGTACA
*
68655259 AAAATTTTACCGATTGTGTGTTTAATTAGGGAAAGGACTACG
1 AAAATTTTACCAATTGTGTGTTTAATTAGGGAAAGGACTACG
68655301 AAAATTTTACCAATTGTGTGTTTAATTAGGGAAAGGACTA
1 AAAATTTTACCAATTGTGTGTTTAATTAGGGAAAGGACTA
68655341 AATTACATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (42 bp):
AAAATTTTACCAATTGTGTGTTTAATTAGGGAAAGGACTACG
Found at i:68658657 original size:20 final size:21
Alignment explanation
Indices: 68658632--68658671 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
68658622 AATAATTCAA
*
68658632 AAAACACA-TTAAATTGGTTT
1 AAAACAAAGTTAAATTGGTTT
*
68658652 AAAACAAAGTTAATTTGGTT
1 AAAACAAAGTTAAATTGGTT
68658672 GCACTAGGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.35
Consensus pattern (21 bp):
AAAACAAAGTTAAATTGGTTT
Found at i:68664250 original size:24 final size:24
Alignment explanation
Indices: 68664223--68664268 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
68664213 AGAAGACTAT
*
68664223 ATATAAAAATATAATAAATAAACA
1 ATATAAAAATAAAATAAATAAACA
*
68664247 ATATTAAAATAAAATAAATAAA
1 ATATAAAAATAAAATAAATAAA
68664269 TATAAATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (24 bp):
ATATAAAAATAAAATAAATAAACA
Found at i:68664256 original size:15 final size:15
Alignment explanation
Indices: 68664225--68664276 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
68664215 AAGACTATAT
68664225 ATAAAAATATAATAA
1 ATAAAAATATAATAA
*
68664240 ATAAACAATATTA-AA
1 ATAAA-AATATAATAA
68664255 AT-AAAATA-AATAA
1 ATAAAAATATAATAA
*
68664268 ATATAAATA
1 ATAAAAATA
68664277 CATATTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
12 1 0.03
13 8 0.26
14 7 0.23
15 9 0.29
16 6 0.19
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (15 bp):
ATAAAAATATAATAA
Found at i:68672593 original size:15 final size:15
Alignment explanation
Indices: 68672573--68672608 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
68672563 TTGGGTTGGC
68672573 TTTTAATTCATTTTA
1 TTTTAATTCATTTTA
* *
68672588 TTTTAATTTATTTTT
1 TTTTAATTCATTTTA
68672603 TTTTAA
1 TTTTAA
68672609 ATTCCAACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTAATTCATTTTA
Found at i:68672689 original size:22 final size:22
Alignment explanation
Indices: 68672664--68672706 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
68672654 TTGCTTCCCA
68672664 TTTTCTTCTTTCTTTCACTTTTT
1 TTTTCTT-TTTCTTTCACTTTTT
*
68672687 TTTTCTTTTTCTTTCTCTTT
1 TTTTCTTTTTCTTTCACTTT
68672707 CATTTGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTCTTTTTCTTTCACTTTTT
Found at i:68680521 original size:43 final size:43
Alignment explanation
Indices: 68680431--68680521 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
68680421 TTTCGAGATG
** * * *
68680431 TGATTACATGTAAGACCATGTCTGGGACATTGGTATTGTATTG
1 TGATTACATGTAAGACCATGTCTAAGACATTGGCATCGTATTA
68680474 TGATTACATGTAAGACCATGTCTAAGACATTGGCATCGT-TATA
1 TGATTACATGTAAGACCATGTCTAAGACATTGGCATCGTAT-TA
68680517 TGATT
1 TGATT
68680522 TCGTATAAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
42 1 0.02
43 41 0.98
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (43 bp):
TGATTACATGTAAGACCATGTCTAAGACATTGGCATCGTATTA
Found at i:68688287 original size:40 final size:43
Alignment explanation
Indices: 68688192--68688288 Score: 110
Period size: 40 Copynumber: 2.3 Consensus size: 43
68688182 GTAACGATCC
* * *
68688192 CGCACACTTAGTGCCATCTCAAATAATCGAAGCTATCTCGATAT
1 CGCACACTTAGTGCCA-CTCAAATAACCGAAGCTATCTCCAAAT
* * *
68688236 CGCACAATTAGTG-C-CTCATATAGCCGAAGCTAT-TCCAAAT
1 CGCACACTTAGTGCCACTCAAATAACCGAAGCTATCTCCAAAT
68688276 CGCACACTTAGTG
1 CGCACACTTAGTG
68688289 TCGAACATTG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
40 17 0.37
41 16 0.35
43 1 0.02
44 12 0.26
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (43 bp):
CGCACACTTAGTGCCACTCAAATAACCGAAGCTATCTCCAAAT
Found at i:68695094 original size:23 final size:22
Alignment explanation
Indices: 68695051--68695108 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
68695041 AAAAGGTATC
* *
68695051 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
68695072 TACTAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
68695095 TTCATATCATATCT
1 TACAAATCATATCT
68695109 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:68695103 original size:22 final size:23
Alignment explanation
Indices: 68695064--68695108 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
68695054 AAATTAAATC
68695064 TCTAAGATTACTAAATCATATCT
1 TCTAAGATTACTAAATCATATCT
* *
68695087 TCTAAGATTTC-ATATCATATCT
1 TCTAAGATTACTAAATCATATCT
68695109 AAGATTGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.36, C:0.18, G:0.04, T:0.42
Consensus pattern (23 bp):
TCTAAGATTACTAAATCATATCT
Found at i:68695126 original size:18 final size:18
Alignment explanation
Indices: 68695087--68695189 Score: 136
Period size: 18 Copynumber: 5.7 Consensus size: 18
68695077 AATCATATCT
*
68695087 TCTAAGATTTCATATCATA
1 TCTAAGATTGCA-ATCATA
*
68695106 TCTAAGATTGCAATGATA
1 TCTAAGATTGCAATCATA
*
68695124 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
68695141 TCTAAGATTGCATATCATA
1 TCTAAGATTGCA-ATCATA
* *
68695160 TCAAATATTGCAATCATA
1 TCTAAGATTGCAATCATA
68695178 TCTAAGATTGCA
1 TCTAAGATTGCA
68695190 TATTGAAGAT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
17 15 0.21
18 31 0.42
19 27 0.37
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:68695185 original size:37 final size:36
Alignment explanation
Indices: 68695100--68695192 Score: 134
Period size: 37 Copynumber: 2.6 Consensus size: 36
68695090 AAGATTTCAT
* * *
68695100 ATCATATCTAAGATTGCA-ATGATATCTAAGATTGT
1 ATCATATCTAAGATTGCATATCATATCAAAGATTGA
*
68695135 ATCATATCTAAGATTGCATATCATATCAAATATTGCA
1 ATCATATCTAAGATTGCATATCATATCAAAGATTG-A
68695172 ATCATATCTAAGATTGCATAT
1 ATCATATCTAAGATTGCATAT
68695193 TGAAGATTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
35 18 0.35
36 13 0.25
37 21 0.40
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.37
Consensus pattern (36 bp):
ATCATATCTAAGATTGCATATCATATCAAAGATTGA
Found at i:68695825 original size:44 final size:43
Alignment explanation
Indices: 68695775--68695857 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
68695765 CCTGTTGATA
**
68695775 TCTTCGATCTGCTCTCCGCCGAATACAGAGACGCCAAATCTATT
1 TCTTCGATCTGCTCTCCAAC-AATACAGAGACGCCAAATCTATT
* * * *
68695819 TCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCCAACAATACAGAGACGCCAAATC
68695858 ATCTTAGATT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
43 18 0.55
44 15 0.45
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (43 bp):
TCTTCGATCTGCTCTCCAACAATACAGAGACGCCAAATCTATT
Found at i:68695940 original size:261 final size:261
Alignment explanation
Indices: 68695476--68695959 Score: 720
Period size: 261 Copynumber: 1.9 Consensus size: 261
68695466 CATGGTCCTC
* *
68695476 AATCTGCTCATTGCAAACTCAAGACTGTCATGTTGATATCTTCGATCTGCTCTCTGTCAAACACA
1 AATCTGCTCATTGCAAACTCAAGACTGTCATGTTGATATCTTCGATCTGCTCTCCGCCAAACACA
* * * *
68695541 GAGACGCTAAATCTGCTTTTTCGATTTGTTTTCTGACAATACAGAGATGCCAAATCATCTTAGAT
66 GAGACGCCAAATCTGATTTTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGAT
** * * *
68695606 CTACTTCAGCGTAAACACGTGAAAGCCAAATCTGCTGTGTCTTCGATTTGCTCCTTGTAAACACA
131 CTACTTCAGCGTAAACACACGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACA
* *
68695671 AGGATGCCAAATCATCTTGGTTCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATGTCTT
196 AGGATGCCAAACCATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATGTCTT
68695736 T
261 T
* * * * * *
68695737 AATCTGCTTC-TTGTAAACTTATGACTGTCCTGTTGATATCTTCGATCTGCTCTCCGCCGAATAC
1 AATCTGC-TCATTGCAAACTCAAGACTGTCATGTTGATATCTTCGATCTGCTCTCCGCCAAACAC
68695801 AGAGACGCCAAATCT-ATTTCTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAG
65 AGAGACGCCAAATCTGATTT-TTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAG
* * * * *
68695865 ATTTGCTTCAGCGTAAGCACACGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCA
129 ATCTACTTCAGCGTAAACACACGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACA
68695930 CAAGGATGCCAAACCATCTTGGATCTGCTT
194 CAAGGATGCCAAACCATCTTGGATCTGCTT
68695960 TAGTCATCTG
Statistics
Matches: 197, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
260 3 0.02
261 192 0.97
262 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (261 bp):
AATCTGCTCATTGCAAACTCAAGACTGTCATGTTGATATCTTCGATCTGCTCTCCGCCAAACACA
GAGACGCCAAATCTGATTTTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGAT
CTACTTCAGCGTAAACACACGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACA
AGGATGCCAAACCATCTTGGATCTGCTTCAGTAAAATCATCTGAAGGTCAGATCTGCTATGTCTT
T
Found at i:68696474 original size:205 final size:200
Alignment explanation
Indices: 68695820--68696566 Score: 1219
Period size: 200 Copynumber: 3.7 Consensus size: 200
68695810 AAATCTATTT
68695820 CTTCGATTTGTTCTCT-AACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCA
1 CTTCGATTTGTTCTCTGAA-AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCA
*
68695884 CACGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
65 CGCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
* *
68695949 TGGATCTGCTTTAGTCATCTGAAGGTTAGAAATGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
130 TGGATCTGCTTCAGTCATCTGAAGGTTAGATATGCTATGTATCTGCTCTCCGTCGAAATGGAGAT
68696014 GCCAGA
195 GCCAGA
*
68696020 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
68696085 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * * *
68696150 GAATCTGCTTCAGTCATCTAAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGGAGATG
131 GGATCTGCTTCAGTCATCTGAAGGTTAGATATGCTATGTATCTGCTCTCCGTCGAAATGGAGATG
68696215 CCAGA
196 CCAGA
* *
68696220 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCCTAAACAC
1 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* *
68696285 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
68696350 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATTTGCTATGTATTTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAG--T---CATCTGAAGGTTAGATATGCTATGTATCTGCTCTCCGTCGAAATGG
*
68696415 AGATGCCAAA
191 AGATGCCAGA
*
68696425 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
* * *
68696490 GCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTATGCACAA-GATGCCAAAGCATCTT
66 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
68696554 GGATCTTGCTTCA
131 GGATC-TGCTTCA
68696567 ACCAGATCTA
Statistics
Matches: 511, Mismatches: 29, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
200 324 0.63
201 2 0.00
202 1 0.00
204 20 0.04
205 164 0.32
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (200 bp):
CTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTCATCTGAAGGTTAGATATGCTATGTATCTGCTCTCCGTCGAAATGGAGATG
CCAGA
Found at i:68696566 original size:405 final size:400
Alignment explanation
Indices: 68695820--68696566 Score: 1255
Period size: 405 Copynumber: 1.9 Consensus size: 400
68695810 AAATCTATTT
* *
68695820 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAGCAC
1 CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCCTAAACAC
68695885 ACGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 ACGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
68695950 GGATCTGCTTTAGTCATCTGAAGGTTAGAAATGCTATGTATCTGCTCTCCGTCGAAATGGAGATG
131 GGATCTGCTTCAGTCATCTGAAGGTTAGAAATGCTATGTATCTGCTCTCCGTCGAAATGGAGATG
* *
68696015 CCAGACTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTA
196 CCAAACTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTA
* * *
68696080 AGCACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAACC
261 AGCACGCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCCAAACC
68696145 ATCTTGAATCTGCTTCAGTCATCTAAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGG
326 ATCTTGAATCTGCTTCAGTCATCTAAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGG
68696210 AGATGCCAGA
391 AGATGCCAGA
68696220 CTTCGATTTGTTCTCTGAA-AATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCCTAAACA
1 CTTCGATTTGTTCTCT-AACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCCTAAACA
** *
68696284 CGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
65 CACGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCT
** *
68696349 TGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATTTGCTATGTATTTGCTCTCCGTCGAAATG
130 TGGATCTGCTTCAG--T---CATCTGAAGGTTAGAAATGCTATGTATCTGCTCTCCGTCGAAATG
*
68696414 GAGATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTC
190 GAGATGCCAAACTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTC
*
68696479 AGCGTAAGCACGCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTATGCACAAG-ATGC
255 AGCGTAAGCACGCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGC
* *
68696543 CAAAGCATCTTGGATCTTGCTTCA
320 CAAACCATCTTGAATC-TGCTTCA
68696567 ACCAGATCTA
Statistics
Matches: 322, Mismatches: 18, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
400 134 0.42
401 2 0.01
402 1 0.00
404 18 0.06
405 167 0.52
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (400 bp):
CTTCGATTTGTTCTCTAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCCTAAACAC
ACGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTCATCTGAAGGTTAGAAATGCTATGTATCTGCTCTCCGTCGAAATGGAGATG
CCAAACTTCGATTTGTTCTCTGAAAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTA
AGCACGCGAAAACCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAGCACAAGAATGCCAAACC
ATCTTGAATCTGCTTCAGTCATCTAAAGGTTAGATCTGCTATGTATCTACTCTCCGTCGAAATGG
AGATGCCAGA
Found at i:68697526 original size:6 final size:6
Alignment explanation
Indices: 68697510--68697567 Score: 61
Period size: 6 Copynumber: 9.8 Consensus size: 6
68697500 CGCCTCTTCA
68697510 TTTTTC TTTTTTC TTTTTC TTTTT- TTATTT- TTATTT- TTTTTC TTTTTC
1 TTTTTC -TTTTTC TTTTTC TTTTTC TT-TTTC TT-TTTC TTTTTC TTTTTC
68697558 -TTTTC TTTTT
1 TTTTTC TTTTT
68697568 TTCCCTTTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
5 10 0.21
6 32 0.67
7 6 0.12
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:68697576 original size:20 final size:19
Alignment explanation
Indices: 68697537--68697580 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
68697527 TCTTTTTTTA
* *
68697537 TTTTTATTTTTTTTCTTTT
1 TTTTTATTTTTTTCCCTTT
*
68697556 TCTTTTCTTTTTTTCCCTTT
1 T-TTTTATTTTTTTCCCTTT
68697576 TTTTT
1 TTTTT
68697581 TTAAATAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTATTTTTTTCCCTTT
Found at i:68697576 original size:29 final size:29
Alignment explanation
Indices: 68697516--68697579 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
68697506 TTCATTTTTC
* *
68697516 TTTTTTCTTTTTCTTTTTTTATTTTTATT
1 TTTTTTCTTTTTCTTTTTTTATTTTCACT
*
68697545 TTTTTTCTTTTTCTTTTCTTT-TTTTCCCT
1 TTTTTTCTTTTTCTTTT-TTTATTTTCACT
68697574 TTTTTT
1 TTTTTT
68697580 TTTAAATAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 28 0.90
30 3 0.10
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.84
Consensus pattern (29 bp):
TTTTTTCTTTTTCTTTTTTTATTTTCACT
Found at i:68699638 original size:39 final size:39
Alignment explanation
Indices: 68699603--68700054 Score: 447
Period size: 39 Copynumber: 11.5 Consensus size: 39
68699593 GGATATAGTA
* * * * *
68699603 CCAGTACGAAGCCTGCGGACCTTAAGTCCGAATATAGTA
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * * * *
68699642 CTAGCATGAAGCCTACGAATCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * * *
68699681 CCAGCATGAAGCCTGCGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATT
* *
68699721 CCAGCACGAAGCCTACAGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * * * *
68699760 CCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATT
1 CCAGCACGAAGCCTGC-GGACCTTAAGTCCGGATACAATT
* * * *
68699800 CCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATACAATT
1 CCAGCACGA-AGCCTGC-GGACCTTAAGTCCGGATACAATT
*
68699840 CCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
*
68699879 CCAGCACAAAGCCTGCGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* * * ** * *
68699918 CTAGCACAAAGCCTGTGGGTCTTGAAGCCCGGATATAATT
1 CCAGCACGAAGCCTGCGGACCTT-AAGTCCGGATACAATT
** * * *
68699958 CCAGCATAAAGCCTGCGGTACTTTAAGCCCAGATACAATT
1 CCAGCACGAAGCCTGCGG-ACCTTAAGTCCGGATACAATT
* *
68699998 CCAGCATGAAGCTTGCGGACCTTAAGTCCGGATACAATT
1 CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
* **
68700037 CTAGCAAAAAGCCTGCGG
1 CCAGCACGAAGCCTGCGG
68700055 GTCTTTAAGC
Statistics
Matches: 345, Mismatches: 62, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
39 185 0.54
40 157 0.46
41 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATT
Found at i:68700051 original size:158 final size:158
Alignment explanation
Indices: 68699663--68700054 Score: 615
Period size: 158 Copynumber: 2.5 Consensus size: 158
68699653 CCTACGAATC
* * * * *
68699663 TTAAGTCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCAC
1 TTAAGCCCGGATACAATTCCAGCATGAAGCTTGC-GGACCTTAAGTCCGGATACAATTCCAGCAC
* * * *
68699728 GAAGCCTACAGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGA
65 AAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTGAAGCCCGGA
*
68699793 TATAATTCCAGCATATAGCCTGCGGGTCT
130 TATAATTCCAGCATAAAGCCTGCGGGTCT
*
68699822 TTAAGCCCGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACA
1 TTAAGCCCGGATACAATTCCAGCATGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACA
* *
68699887 AAGCCTGCGGACCTTAAGTCCGGATACAATTCTAGCACAAAGCCTGTGGGTCTTGAAGCCCGGAT
66 AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTGAAGCCCGGAT
68699952 ATAATTCCAGCATAAAGCCTGC-GGTACT
131 ATAATTCCAGCATAAAGCCTGCGGGT-CT
* * *
68699980 TTAAGCCCAGATACAATTCCAGCATGAAGCTTGCGGACCTTAAGTCCGGATACAATTCTAGCAAA
1 TTAAGCCCGGATACAATTCCAGCATGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACA
68700045 AAGCCTGCGG
66 AAGCCTGCGG
68700055 GTCTTTAAGC
Statistics
Matches: 215, Mismatches: 17, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
157 3 0.01
158 181 0.84
159 31 0.14
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (158 bp):
TTAAGCCCGGATACAATTCCAGCATGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACA
AAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTGAAGCCCGGAT
ATAATTCCAGCATAAAGCCTGCGGGTCT
Found at i:68700054 original size:79 final size:78
Alignment explanation
Indices: 68699570--68700071 Score: 475
Period size: 79 Copynumber: 6.3 Consensus size: 78
68699560 TCACCAACAC
* * * * * * * *
68699570 AAAGCCTACGGGACTTTAAGCTCGGATATAGTACCAGTACGAAGCCTGCGGACCTTAAGTCCGAA
1 AAAGCCTGC-GGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGA
* * * *
68699635 TATAGTACTAGCAT
65 TACAATTCCAGCAT
* * * * * * *
68699649 GAAGCCTAC-GAATCTTAAGTCCGGATACAATTCCAGCATGAAGCCTGCGGGTCTTTAAGCCCGG
1 AAAGCCTGCGGACT-TTAAGCCCGGATACAATTCCAGCACGAAGCCTGC-GGACCTTAAGCCCGG
*
68699713 ATACAATTCCAGCAC
64 ATACAATTCCAGCAT
* * * * * * * *
68699728 GAAGCCTACAGACCTTAAGTCCGGATACAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGA
1 AAAGCCTGCGGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGC-GGACCTTAAGCCCGGA
*
68699793 TATAATTCCAGCAT
65 TACAATTCCAGCAT
* * * *
68699807 ATAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGA
1 AAAGCCTGC-GGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGA
*
68699872 TACAATTCCAGCAC
65 TACAATTCCAGCAT
* * * * * **
68699886 AAAGCCTGCGGACCTTAAGTCCGGATACAATTCTAGCACAAAGCCTGTGGGTCTTGAAGCCCGGA
1 AAAGCCTGCGGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTT-AAGCCCGGA
*
68699951 TATAATTCCAGCAT
65 TACAATTCCAGCAT
* * * *
68699965 AAAGCCTGCGGTACTTTAAGCCCAGATACAATTCCAGCATGAAGCTTGCGGACCTTAAGTCCGGA
1 AAAGCCTGCGG-ACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGA
* *
68700030 TACAATTCTAGCAA
65 TACAATTCCAGCAT
* *
68700044 AAAGCCTGCGGGTCTTTAAGCTCGGATA
1 AAAGCCTGC-GGACTTTAAGCCCGGATA
68700072 TACATCAAAT
Statistics
Matches: 348, Mismatches: 68, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
77 3 0.01
78 64 0.18
79 210 0.60
80 71 0.20
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.22
Consensus pattern (78 bp):
AAAGCCTGCGGACTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGAT
ACAATTCCAGCAT
Found at i:68700072 original size:119 final size:118
Alignment explanation
Indices: 68699570--68700073 Score: 612
Period size: 119 Copynumber: 4.3 Consensus size: 118
68699560 TCACCAACAC
* * * * * * *
68699570 AAAGCCTACGGGACTTTAAGCTCGGATATAGTACCAGTACGAAGCCTGCGGACCTTAAGTCCGAA
1 AAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
* * * * ** * * *
68699635 TATAGTACTAGCATGAAGCCTACGAATCTTAAGTCCGGATACAATTCCAGCAT
66 TACAATTCCAGCACAAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCAT
* * * *
68699688 GAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTACAGACCTTAAGTCCGGA
1 AAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
* * * *
68699753 TACAATTCCAGCACAAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCAT
66 TACAATTCCAGCACAAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCAT
* * *
68699807 ATAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGA
1 AAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
* *
68699872 TACAATTCCAGCACAAAGCCTGCGGACCTTAAGTCCGGATACAATTCTAGCAC
66 TACAATTCCAGCACAAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCAT
* * ** * * *
68699925 AAAGCCTGTGGGTCTTGAAGCCCGGATATAATTCCAGCATAAAGCCTGCGGTACTTTAAGCCCAG
1 AAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGG-ACCTTAAGTCCGG
** * * *
68699990 ATACAATTCCAGCATGAAGCTTGCGGACCTTAAGTCCGGATACAATTCTAGCAA
65 ATACAATTCCAGCACAAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCAT
*
68700044 AAAGCCTGCGGGTCTTTAAGCTCGGATATA
1 AAAGCCTGCGGGTCTTTAAGCCCGGATATA
68700074 CATCAAATAT
Statistics
Matches: 332, Mismatches: 52, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
118 138 0.42
119 194 0.58
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (118 bp):
AAAGCCTGCGGGTCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGA
TACAATTCCAGCACAAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCAT
Found at i:68703813 original size:46 final size:45
Alignment explanation
Indices: 68703737--68703908 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 45
68703727 AACCTGCCCA
* *
68703737 TAAGCGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCC
1 TAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
* * *
68703782 TTAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT-C
1 -TAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCC
* * ** *
68703831 TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCC
1 TAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
* *
68703875 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 -TAAGCGAACTCGGACTCAACTCAACGAGCTCGG
68703909 ATGCCCAAAT
Statistics
Matches: 101, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 56 0.55
47 25 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
Found at i:68703850 original size:93 final size:93
Alignment explanation
Indices: 68703741--68703913 Score: 265
Period size: 93 Copynumber: 1.9 Consensus size: 93
68703731 TGCCCATAAG
* ** * *
68703741 CGAACTCAGACTCAACTCAATGAGCTCGGGCGTTCGCATCCTTAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
68703806 ACAAGCTCGGATGCCTAGTTACATCTCA
66 ACAAGCTCGGATGCCTAGTTACATCTCA
* *
68703834 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
68703899 ACGAGTTCGGATGCC
66 ACAAGCTCGGATGCC
68703914 CAAATATCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTACATCTCA
Found at i:68703928 original size:46 final size:45
Alignment explanation
Indices: 68703778--68703928 Score: 105
Period size: 46 Copynumber: 3.2 Consensus size: 45
68703768 GGGCGTTCGC
* * *
68703778 ATCCTTAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGT
1 ATCC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA-T
* * * * *
68703825 -TACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGC--
1 AT-C--CTAAGTGAACTCGGACTCAACTCAACGAGTTCG--GATGCCCAT
68703871 ATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAAT
1 ATCC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC--AT
68703919 ATCCT-AGTGA
1 ATCCTAAGTGA
68703929 CATGTCACTT
Statistics
Matches: 79, Mismatches: 13, Indels: 25
0.68 0.11 0.21
Matches are distributed among these distances:
44 5 0.06
45 2 0.03
46 34 0.43
47 28 0.35
48 6 0.08
49 4 0.05
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (45 bp):
ATCCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAT
Found at i:68708900 original size:44 final size:43
Alignment explanation
Indices: 68708748--68708914 Score: 165
Period size: 44 Copynumber: 3.7 Consensus size: 43
68708738 GGGCATCCAA
** *
68708748 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AA-CCCGAG
*** * * *
68708793 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGC-ATCTGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T--GCAACCCGAG
68708840 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-CCCGAG
*
68708884 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68708915 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 35 0.35
45 24 0.24
46 8 0.08
47 26 0.26
48 2 0.02
50 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (43 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACCCGAG
Found at i:68711867 original size:15 final size:15
Alignment explanation
Indices: 68711828--68711907 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
68711818 GTATCTTGGG
*
68711828 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
68711843 TATCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
68711858 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
68711873 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
68711888 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
68711902 TTTCTT
1 TTTCTT
68711908 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.11, C:0.17, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:68711897 original size:30 final size:30
Alignment explanation
Indices: 68711819--68711906 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
68711809 CATAGTATCG
* * *
68711819 TATCTTGGGTTTCTTTA-TCCTGGATATCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
68711849 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
68711879 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
68711907 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.11, C:0.17, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:68713890 original size:46 final size:44
Alignment explanation
Indices: 68713820--68713996 Score: 185
Period size: 46 Copynumber: 3.9 Consensus size: 44
68713810 ATATTTGGGC
68713820 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *** * *
68713864 ATGTTCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
68713913 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* * *
68713958 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68713997 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 15, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:68713976 original size:93 final size:93
Alignment explanation
Indices: 68713817--68713989 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
68713807 GGGATATTTG
****
68713817 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
68713882 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
68713910 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
68713975 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
68713990 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:68717479 original size:23 final size:22
Alignment explanation
Indices: 68717436--68717493 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
68717426 AAAAGGTATC
* *
68717436 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
68717457 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
68717480 TGCATATCATATCT
1 TACAAATCATATCT
68717494 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:68717487 original size:17 final size:19
Alignment explanation
Indices: 68717472--68717594 Score: 159
Period size: 19 Copynumber: 6.8 Consensus size: 19
68717462 AATCATATCT
68717472 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
68717491 TCTAAGATTGCA-ATGATA
1 TCTAAGATTGCATATCATA
68717509 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
68717526 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
68717545 TCAAATATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
* *
68717563 TCTAAGATTG--TCTCACA
1 TCTAAGATTGCATATCATA
68717580 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
68717595 TGAAGATTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
17 29 0.33
18 29 0.33
19 31 0.35
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:68717540 original size:54 final size:54
Alignment explanation
Indices: 68717472--68717594 Score: 201
Period size: 54 Copynumber: 2.3 Consensus size: 54
68717462 AATCATATCT
* * *
68717472 TCTAAGATTGCATATCATATCTAAGATTGCAATGATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCACA
* *
68717526 TCTAAGATTGCATATCATATCAAATATTGCAATCATATCTAAGATTGTCTCACA
1 TCTAAGATTGCATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCACA
68717580 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
68717595 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 64 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCAAAGATTGCAATCATATCTAAGATTGTATCACA
Found at i:68717570 original size:37 final size:36
Alignment explanation
Indices: 68717475--68717572 Score: 135
Period size: 37 Copynumber: 2.7 Consensus size: 36
68717465 CATATCTTCT
* *
68717475 AAGATTGCATATCATATCTAAGATTGCAATGATATCT
1 AAGATTGCA-ATCATATCTAAGATTGCAATCATATCA
*
68717512 AAGATTG-TATCATATCTAAGATTGCATATCATATCA
1 AAGATTGCAATCATATCTAAGATTGCA-ATCATATCA
*
68717548 AATATTGCAATCATATCTAAGATTG
1 AAGATTGCAATCATATCTAAGATTG
68717573 TCTCACATCT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
35 18 0.33
36 13 0.24
37 23 0.43
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (36 bp):
AAGATTGCAATCATATCTAAGATTGCAATCATATCA
Found at i:68718649 original size:46 final size:48
Alignment explanation
Indices: 68718522--68718737 Score: 209
Period size: 45 Copynumber: 4.6 Consensus size: 48
68718512 GAGAGCCAAC
* * * * * *
68718522 GTAAGACCATGTCTGGGACATGGCATCAG-TATTGAGACGAAAGCTAAT
1 GTAAGACCATGTCTGGGACATGGCATCGGCTA-CGAGATGTAAGCCAGT
68718570 GTAAGA-CATGTCTGGG-CAT-GCATCGGCCT-CGAGATGTAAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGG-CTACGAGATGTAAGCCAGT
* * *
68718615 GTAAGA-CATGTATGGGACAT-GCATCGGCTACGAGATGT-A-TCAGG
1 GTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTAAGCCAGT
*
68718659 GTAAGACCATGTCCGGGACATGGCATCGGC-ACAGAGATGTTAGAGCCAGT
1 GTAAGACCATGTCTGGGACATGGCATCGGCTAC-GAGATG-TA-AGCCAGT
* *
68718709 ATAAGACCATGTCTAGGACATGGCATCGG
1 GTAAGACCATGTCTGGGACATGGCATCGG
68718738 TATTACAACC
Statistics
Matches: 141, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
44 9 0.06
45 49 0.35
46 35 0.25
47 12 0.09
48 6 0.04
49 1 0.01
50 29 0.21
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.21
Consensus pattern (48 bp):
GTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATGTAAGCCAGT
Found at i:68720480 original size:28 final size:28
Alignment explanation
Indices: 68720445--68720511 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
68720435 AAAAAAAATT
* *
68720445 GCACTAAGTGTGCAAG-TCTGATTATTGA
1 GCACTAAGTGTGCAAGCT-TAAGTATTGA
*
68720473 GCACTAAGTGTGCAAGCTTAAGTATTTA
1 GCACTAAGTGTGCAAGCTTAAGTATTGA
68720501 GCACTAAGTGT
1 GCACTAAGTGT
68720512 ACGAATTTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 34 0.97
29 1 0.03
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGCTTAAGTATTGA
Found at i:68737592 original size:11 final size:11
Alignment explanation
Indices: 68737576--68737602 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
68737566 GAACAAACAT
68737576 GTCACACATGG
1 GTCACACATGG
68737587 GTCACACATGG
1 GTCACACATGG
68737598 GTCAC
1 GTCAC
68737603 TTTTCATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (11 bp):
GTCACACATGG
Found at i:68742180 original size:46 final size:47
Alignment explanation
Indices: 68742011--68742371 Score: 221
Period size: 49 Copynumber: 7.7 Consensus size: 47
68742001 TTTGTGTATT
* * * *
68742011 AGTGTAAGA-CATGTCTGGGACATGCATCGACCAC-ATTAT-TAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGT-AAGCC
* * * * * *
68742057 AGTGTAAGACCATGTTTGGGACATGGCACCGGCATTGAGACG-AGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTA-AGCC
*
68742105 AGTGTAAGA-CATGCCTGGG-CATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
* * *
68742150 AGAGTAAGA-TATGTCTGGGACATGCATCGG-CTACGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCC
* * * * * * *
68742194 AGTGTAAGACTATGTCCGGGACAAGGCATCAGCATGGAGATTGAAAGCC
1 AGTGTAAGACCATGTCTGGGAC-ATGCATCGGCCTCGAGA-TGTAAGCC
* * *
68742243 AGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGA-AT-TCAATAGTC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGT--A-AGCC
* * *
68742292 AGTGTAAAACCATGTCTGGGACATGGCATC-GACTTGATGGATG--AGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGA--GATGTAAGCC
* *
68742339 AATGTAAGACCATGTTTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGC
68742372 ATTACACCCT
Statistics
Matches: 248, Mismatches: 44, Indels: 44
0.74 0.13 0.13
Matches are distributed among these distances:
44 10 0.04
45 45 0.18
46 42 0.17
47 56 0.23
48 29 0.12
49 64 0.26
51 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCC
Found at i:68743537 original size:21 final size:20
Alignment explanation
Indices: 68743513--68743552 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
68743503 GTTATAATGA
68743513 CCACACGCGCGTGTTGCCCTT
1 CCACACGCGCGTG-TGCCCTT
* *
68743534 CCACATGGGCGTGTGCCCT
1 CCACACGCGCGTGTGCCCT
68743553 ATTTCAAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.10, C:0.40, G:0.28, T:0.23
Consensus pattern (20 bp):
CCACACGCGCGTGTGCCCTT
Found at i:68756794 original size:19 final size:19
Alignment explanation
Indices: 68756770--68756807 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
68756760 TATAATTCTT
68756770 TTACCTGCAAAAACTTTCG
1 TTACCTGCAAAAACTTTCG
*
68756789 TTACCTGCATAAACTTTCG
1 TTACCTGCAAAAACTTTCG
68756808 CTTATTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (19 bp):
TTACCTGCAAAAACTTTCG
Found at i:68757506 original size:24 final size:24
Alignment explanation
Indices: 68757479--68757530 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
68757469 TTAGTAAGTC
*
68757479 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
68757503 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
68757527 AAAT
1 AAAT
68757531 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:68759475 original size:24 final size:24
Alignment explanation
Indices: 68759448--68759499 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
68759438 TTAGTAAGTC
*
68759448 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
68759472 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
68759496 AAAT
1 AAAT
68759500 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:68765866 original size:3 final size:3
Alignment explanation
Indices: 68765858--68765888 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
68765848 AGATATTTAC
68765858 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
68765889 CAATTAATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:68766046 original size:12 final size:12
Alignment explanation
Indices: 68766029--68766054 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68766019 AAAGAAATAA
68766029 AATAAATAAAAG
1 AATAAATAAAAG
68766041 AATAAATAAAAG
1 AATAAATAAAAG
68766053 AA
1 AA
68766055 AGAAAAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (12 bp):
AATAAATAAAAG
Found at i:68766100 original size:15 final size:15
Alignment explanation
Indices: 68766050--68766104 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
68766040 GAATAAATAA
* *
68766050 AAGAAAGAAAAACAAG
1 AAGAAAGAAATA-GAG
*
68766066 AA-AAAGAAGTAGAG
1 AAGAAAGAAATAGAG
68766080 AAGAAACGAAATAGA-
1 AAGAAA-GAAATAGAG
68766095 AAGAAAGAAA
1 AAGAAAGAAA
68766105 GAAGAAAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 8 0.24
15 16 0.48
16 9 0.27
ACGTcount: A:0.71, C:0.04, G:0.22, T:0.04
Consensus pattern (15 bp):
AAGAAAGAAATAGAG
Found at i:68769007 original size:17 final size:17
Alignment explanation
Indices: 68768985--68769025 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
68768975 GGAATGATAG
68768985 TAAAATTATTAATTTGT
1 TAAAATTATTAATTTGT
68769002 TAAAATTATTAATTTGT
1 TAAAATTATTAATTTGT
*
68769019 TACAATT
1 TAAAATT
68769026 TAGTACAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.51
Consensus pattern (17 bp):
TAAAATTATTAATTTGT
Found at i:68779620 original size:21 final size:20
Alignment explanation
Indices: 68779596--68779634 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
68779586 TTTCAAAAGG
68779596 TTAAAAAAATTATAAAAATTA
1 TTAAAAAAATT-TAAAAATTA
*
68779617 TTAAAAATATTTAAAAAT
1 TTAAAAAAATTTAAAAAT
68779635 GATGAAGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
TTAAAAAAATTTAAAAATTA
Found at i:68780019 original size:16 final size:17
Alignment explanation
Indices: 68779998--68780030 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
68779988 ACTCAATAAA
68779998 AAATAAAATGTC-CTAT
1 AAATAAAATGTCACTAT
*
68780014 AAATAAATTGTCACTAT
1 AAATAAAATGTCACTAT
68780031 TTTTTTGACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.33
Consensus pattern (17 bp):
AAATAAAATGTCACTAT
Found at i:68790139 original size:21 final size:21
Alignment explanation
Indices: 68790113--68790152 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
68790103 AATCCTAAAT
68790113 AAAACCAAAAACTAAAAACCA
1 AAAACCAAAAACTAAAAACCA
*
68790134 AAAACCATAAACTAAAAAC
1 AAAACCAAAAACTAAAAAC
68790153 TTTAAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.70, C:0.23, G:0.00, T:0.07
Consensus pattern (21 bp):
AAAACCAAAAACTAAAAACCA
Found at i:68790153 original size:7 final size:7
Alignment explanation
Indices: 68790113--68790152 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
68790103 AATCCTAAAT
68790113 AAAACCA
1 AAAACCA
*
68790120 AAAACTA
1 AAAACCA
68790127 AAAACCA
1 AAAACCA
68790134 AAAACCA
1 AAAACCA
* *
68790141 TAAACTA
1 AAAACCA
68790148 AAAAC
1 AAAAC
68790153 TTTAAATAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.70, C:0.23, G:0.00, T:0.07
Consensus pattern (7 bp):
AAAACCA
Found at i:68791105 original size:17 final size:16
Alignment explanation
Indices: 68791083--68791115 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
68791073 TGTTATTGCC
68791083 GAAAATAAAATAAGAAA
1 GAAAATAAAA-AAGAAA
68791100 GAAAATAAAAAAGAAA
1 GAAAATAAAAAAGAAA
68791116 CAAGGTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (16 bp):
GAAAATAAAAAAGAAA
Found at i:68792272 original size:35 final size:35
Alignment explanation
Indices: 68792196--68792326 Score: 99
Period size: 35 Copynumber: 3.7 Consensus size: 35
68792186 ATAGGTAAGT
* * * * *
68792196 ATATGTGAGCTTATAGTGAACTTGAATATTCGATT
1 ATATGTGAGTTTATATTGAATTTGAATATTCGGTC
* **
68792231 ACATGTGAGTTTATATTGAATTTGTGTATTCGGTC
1 ATATGTGAGTTTATATTGAATTTGAATATTCGGTC
* *
68792266 ATATGTGAAG-TTA-ACTTGAATGTGCATATTCGG-C
1 ATATGTG-AGTTTATA-TTGAATTTGAATATTCGGTC
*
68792300 TATATGTGA-TGTTCTATTGAATTTGAA
1 -ATATGTGAGT-TTATATTGAATTTGAA
68792327 CTATAGGTTA
Statistics
Matches: 75, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
34 3 0.04
35 69 0.92
36 3 0.04
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.42
Consensus pattern (35 bp):
ATATGTGAGTTTATATTGAATTTGAATATTCGGTC
Found at i:68798128 original size:86 final size:86
Alignment explanation
Indices: 68798038--68798218 Score: 355
Period size: 86 Copynumber: 2.1 Consensus size: 86
68798028 AATATAATTG
68798038 TAATTATTATAATTTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTT
1 TAATTATTATAATTTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTT
68798103 TGTTAAGTATTAATGTTGATA
66 TGTTAAGTATTAATGTTGATA
68798124 TAATTATTATAATTTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTT
1 TAATTATTATAATTTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTT
68798189 TGTTAAGTATTAATGTTGATA
66 TGTTAAGTATTAATGTTGATA
68798210 TAATT-TTAT
1 TAATTATTAT
68798219 GTGGAGAGAA
Statistics
Matches: 95, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
85 4 0.04
86 91 0.96
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (86 bp):
TAATTATTATAATTTTTATCTTTAATATTAATAATTTGAAATTAATAATAAACATGAAACCTGTT
TGTTAAGTATTAATGTTGATA
Found at i:68798360 original size:51 final size:51
Alignment explanation
Indices: 68798285--68798499 Score: 301
Period size: 51 Copynumber: 4.0 Consensus size: 51
68798275 TATACGTAAA
68798285 AATTAT-CATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAAC
1 AATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAAC
68798335 AATTATACATACACCAACAATG-TTTTTAGGGTAAATAACATTAAACCAACAATTAAACAAC
1 AATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATT--A--AAC-------CAAC
68798396 AATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAAC
1 AATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAAC
68798447 AATTATACATACACCAACAATGTTTTTTAGGG-ACAATAACATTAAACCAAC
1 AATTATACATACACCAACAATGTTTTTTAGGGTA-AATAACATTAAACCAAC
68798498 AA
1 AA
68798500 GTAATTTTAG
Statistics
Matches: 151, Mismatches: 0, Indels: 27
0.85 0.00 0.15
Matches are distributed among these distances:
50 27 0.18
51 70 0.46
52 1 0.01
54 3 0.02
58 3 0.02
60 1 0.01
61 26 0.17
62 20 0.13
ACGTcount: A:0.47, C:0.18, G:0.07, T:0.28
Consensus pattern (51 bp):
AATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAAC
Found at i:68798398 original size:61 final size:63
Alignment explanation
Indices: 68798324--68798451 Score: 242
Period size: 62 Copynumber: 2.1 Consensus size: 63
68798314 GGTAAATAAC
68798324 ATTAAACCAACAATTATACATACACCAACAATG-TTTTTAGGGTAAATAACATTAAACCAACA
1 ATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
68798386 ATTAAA-CAACAATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
1 ATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
68798448 ATTA
1 ATTA
68798452 TACATACACC
Statistics
Matches: 65, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
61 26 0.40
62 39 0.60
ACGTcount: A:0.48, C:0.18, G:0.06, T:0.27
Consensus pattern (63 bp):
ATTAAACCAACAATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACA
Found at i:68798424 original size:112 final size:112
Alignment explanation
Indices: 68798285--68798499 Score: 398
Period size: 112 Copynumber: 1.9 Consensus size: 112
68798275 TATACGTAAA
68798285 AATTATCATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACACC
1 AATTATCATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACACC
68798350 AACAATG-TTTTTAGGGTA-AATAACATTAAACCAACAATTAAACAAC
66 AACAATGTTTTTTAGGG-ACAATAACATTAAACCAACAATTAAACAAC
68798396 AATTATACATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
1 AATTAT-CATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACAC
68798461 CAACAATGTTTTTTAGGGACAATAACATTAAACCAACAA
65 CAACAATGTTTTTTAGGGACAATAACATTAAACCAACAA
68798500 GTAATTTTAG
Statistics
Matches: 101, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
111 6 0.06
112 67 0.66
113 28 0.28
ACGTcount: A:0.47, C:0.18, G:0.07, T:0.28
Consensus pattern (112 bp):
AATTATCATACACCAACAATGTTTTTTAGGGTAAATAACATTAAACCAACAATTATACATACACC
AACAATGTTTTTTAGGGACAATAACATTAAACCAACAATTAAACAAC
Found at i:68798508 original size:33 final size:34
Alignment explanation
Indices: 68798445--68798555 Score: 115
Period size: 33 Copynumber: 3.4 Consensus size: 34
68798435 CATTAAACCA
* *
68798445 ACAATTATACATACACCAACAATGT-TTTTTAGGG
1 ACAATTATACATAAACCAACAA-GTAATTTTAGGG
68798479 ACAA-TA-ACATTAAACCAACAAGTAATTTTA-GG
1 ACAATTATACA-TAAACCAACAAGTAATTTTAGGG
* * *
68798511 TCAATTATACATACACCAACAATTAATTTTA-GG
1 ACAATTATACATAAACCAACAAGTAATTTTAGGG
*
68798544 TCAATTATACAT
1 ACAATTATACAT
68798556 GCTTTATAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
32 10 0.15
33 51 0.75
34 7 0.10
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (34 bp):
ACAATTATACATAAACCAACAAGTAATTTTAGGG
Found at i:68801716 original size:119 final size:119
Alignment explanation
Indices: 68801579--68802437 Score: 1596
Period size: 119 Copynumber: 7.2 Consensus size: 119
68801569 TTTTCAAGTT
68801579 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
68801644 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
68801698 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
68801763 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
68801817 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
68801882 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
68801936 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
68802001 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
68802055 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
68802120 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
*
68802175 ATATATTTAATAATAATTATGTTAATTTATATTTTACA-TATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* * *
68802239 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAAT--TATTAAGAATTT-TTTAAATTATATAGTTTAATTAAA
*
68802295 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
68802360 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
68802415 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
68802438 TAAATATGAT
Statistics
Matches: 727, Mismatches: 6, Indels: 13
0.97 0.01 0.02
Matches are distributed among these distances:
118 2 0.00
119 493 0.68
120 189 0.26
121 41 0.06
122 2 0.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (119 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
Found at i:68802174 original size:18 final size:17
Alignment explanation
Indices: 68802146--68802180 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
68802136 ATTATTAAGA
*
68802146 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
68802163 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
68802181 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:68802200 original size:30 final size:30
Alignment explanation
Indices: 68802166--68802321 Score: 76
Period size: 30 Copynumber: 5.2 Consensus size: 30
68802156 ATTATATATT
68802166 TTAATTAAAATATATTTAATAATAATTATG
1 TTAATTAAAATATATTTAATAATAATTATG
*
68802196 TTAATT--TATAT-TTTACATATCATATATTATG
1 TTAATTAAAATATATTTA-ATA--ATA-ATTATG
* * * * *
68802227 ATTTCAGTAAATTA-ATATAAGAAT-ATTAT-
1 --TTAATTAAAATATATTTAATAATAATTATG
** * * * *
68802256 CCAATTAAGAATTTCATTAAATTAT-A-TATT
1 TTAATTAA-AATAT-ATTTAATAATAATTATG
68802286 TTAATTAAAATATATTTAATAATAATTATG
1 TTAATTAAAATATATTTAATAATAATTATG
68802316 TTAATT
1 TTAATT
68802322 TATATTTTAC
Statistics
Matches: 88, Mismatches: 23, Indels: 30
0.62 0.16 0.21
Matches are distributed among these distances:
27 8 0.09
28 17 0.19
29 8 0.09
30 36 0.41
31 6 0.07
32 2 0.02
33 4 0.05
34 2 0.02
35 5 0.06
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (30 bp):
TTAATTAAAATATATTTAATAATAATTATG
Found at i:68802414 original size:18 final size:17
Alignment explanation
Indices: 68802386--68802420 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
68802376 ATTATTAAGA
*
68802386 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
68802403 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
68802421 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:68802634 original size:44 final size:45
Alignment explanation
Indices: 68802585--68802675 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
68802575 ACCTCTATTC
* * *
68802585 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
68802629 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
68802674 CA
1 CA
68802676 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:68802690 original size:17 final size:16
Alignment explanation
Indices: 68802656--68802724 Score: 111
Period size: 16 Copynumber: 4.2 Consensus size: 16
68802646 GATTAGCTAT
68802656 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
68802672 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
68802689 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
68802705 TACGCCTCTAATCTAA
1 TACACCTCTAATCCAA
68802721 TACA
1 TACA
68802725 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
16 33 0.67
17 16 0.33
ACGTcount: A:0.36, C:0.36, G:0.01, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:68804629 original size:35 final size:35
Alignment explanation
Indices: 68804551--68804630 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
68804541 ATTAAAATGA
**
68804551 TCTATTGAATGTGTGTATTCGGTCATATGTGAAGT
1 TCTATTGAATGTGCATATTCGGTCATATGTGAAGT
* *
68804586 T-AACTTGAATGTGCATATTCGG-CTATATGTGATGT
1 TCTA-TTGAATGTGCATATTCGGTC-ATATGTGAAGT
68804621 TCTATTGAAT
1 TCTATTGAAT
68804631 TTGAACTATA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
34 2 0.05
35 34 0.92
36 1 0.03
ACGTcount: A:0.25, C:0.10, G:0.23, T:0.42
Consensus pattern (35 bp):
TCTATTGAATGTGCATATTCGGTCATATGTGAAGT
Found at i:68809518 original size:35 final size:35
Alignment explanation
Indices: 68809440--68809519 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
68809430 ATTAAAATGA
**
68809440 TCTATTGAATGTGTGTATTCGGTCATATGTGAAGT
1 TCTATTGAATGTGCATATTCGGTCATATGTGAAGT
* *
68809475 T-AACTTGAATGTGCATATTCGG-CTATATGTGATGT
1 TCTA-TTGAATGTGCATATTCGGTC-ATATGTGAAGT
68809510 TCTATTGAAT
1 TCTATTGAAT
68809520 TTGAACTATA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
34 2 0.05
35 34 0.92
36 1 0.03
ACGTcount: A:0.25, C:0.10, G:0.23, T:0.42
Consensus pattern (35 bp):
TCTATTGAATGTGCATATTCGGTCATATGTGAAGT
Found at i:68815173 original size:20 final size:21
Alignment explanation
Indices: 68815128--68815251 Score: 75
Period size: 20 Copynumber: 6.1 Consensus size: 21
68815118 AAAATTTAAA
* * *
68815128 TTTTAAAATTTTTTTTATATAT
1 TTTTAGAATTTTTTATAAAT-T
68815150 TTTTAG-ATTTTTTATAAATT
1 TTTTAGAATTTTTTATAAATT
*** *
68815170 TTTTA-AAAAATATATAAA--
1 TTTTAGAATTTTTTATAAATT
*
68815188 TTTTAGAATTTTTTATAAATA
1 TTTTAGAATTTTTTATAAATT
*
68815209 TTTT-GAATTTTTTA-AAATCA
1 TTTTAGAATTTTTTATAAAT-T
*
68815229 TTTT-GAATTACTTTAT-AATT
1 TTTTAGAATT-TTTTATAAATT
68815249 TTT
1 TTT
68815252 ATTGAGAGAC
Statistics
Matches: 82, Mismatches: 13, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
18 5 0.06
19 13 0.16
20 37 0.45
21 22 0.27
22 5 0.06
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (21 bp):
TTTTAGAATTTTTTATAAATT
Found at i:68815188 original size:60 final size:58
Alignment explanation
Indices: 68815111--68815226 Score: 160
Period size: 60 Copynumber: 2.0 Consensus size: 58
68815101 AAAATTATTA
* * * *
68815111 TTTAAAAAAAATTTAAATTTTAAAATTTTTTTTATATATTTTTAGATTTTTTATAAATTT
1 TTTAAAAAAAATATAAATTTTAAAATTTTTTATAAATATTTTGA-ATTTTTTA-AAATTT
* *
68815171 TTTAAAAAATATATAAATTTTAGAATTTTTTATAAATATTTTGAATTTTTTAAAAT
1 TTTAAAAAAAATATAAATTTTAAAATTTTTTATAAATATTTTGAATTTTTTAAAAT
68815227 CATTTTGAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
58 4 0.08
59 8 0.16
60 38 0.76
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (58 bp):
TTTAAAAAAAATATAAATTTTAAAATTTTTTATAAATATTTTGAATTTTTTAAAATTT
Found at i:68817475 original size:48 final size:48
Alignment explanation
Indices: 68817411--68817632 Score: 207
Period size: 49 Copynumber: 4.6 Consensus size: 48
68817401 CCCCTATGCG
* * *
68817411 TTTGGGAGCAAAGTTTTATTATTA-CTTCCCTAAGCCTCCCTCAATACA
1 TTTGGGAGCAAGGTTTTATTATTACCTTCCGTAAGCCTCCCTC-ACACA
* * * * *
68817459 TTTGGGAGTAAGGTTTTGTTATTACCTTCCGTAAGCTTCCCCCTACGCA
1 TTTGGGAGCAAGGTTTTATTATTACCTTCCGTAAGCCTCCCTC-ACACA
* * * *
68817508 TCTAGGAGAAAGGTTTTATTATTACCTT-CGTAAGCCTCCTCTCACACG
1 TTTGGGAGCAAGGTTTTATTATTACCTTCCGTAAGCCTCC-CTCACACA
* * **
68817556 TTTGGGAG-AAGGGTTTTATTAATACCTTCTGTAAGCCTCCCATCGTACA
1 TTTGGGAGCAA-GGTTTTATTATTACCTTCCGTAAGCCTCCC-TCACACA
* * *
68817605 TCTGGAAGCAAAGTTTTATTATTACCTT
1 TTTGGGAGCAAGGTTTTATTATTACCTT
68817633 TTGTACGTGT
Statistics
Matches: 140, Mismatches: 28, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
47 2 0.01
48 57 0.41
49 79 0.56
50 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (48 bp):
TTTGGGAGCAAGGTTTTATTATTACCTTCCGTAAGCCTCCCTCACACA
Found at i:68817542 original size:97 final size:97
Alignment explanation
Indices: 68817374--68817629 Score: 247
Period size: 97 Copynumber: 2.6 Consensus size: 97
68817364 CCAATAATGA
* ** * * * * * *
68817374 GTTTTATTATTACCTTTTGTTAGTCTCCCCCTATGCGTTTGGGAGCAAAGTTTTATTATTACTTC
1 GTTTTATTAATACCTTCCGTAAGCCTCCCCCTACGCATCTAGGAGCAAAGTTTTATTATTACTTC
*
68817439 CCTAAGCCTCC-CTCAATACATTTGGGAGTAA-G
66 CCTAAGCCTCCTCTC-ACACATTTGGGAG-AAGG
* * *
68817471 GTTTTGTTATTACCTTCCGTAAGCTTCCCCCTACGCATCTAGGAG-AAAGGTTTTATTATTACCT
1 GTTTTATTAATACCTTCCGTAAGCCTCCCCCTACGCATCTAGGAGCAAA-GTTTTATTATTA-CT
* *
68817535 T-CGTAAGCCTCCTCTCACACGTTTGGGAGAAGG
64 TCCCTAAGCCTCCTCTCACACATTTGGGAGAAGG
* *
68817568 GTTTTATTAATACCTTCTGTAAGCCT-CCCAT-CGTACATCT-GGAAGCAAAGTTTTATTATTAC
1 GTTTTATTAATACCTTCCGTAAGCCTCCCCCTACG--CATCTAGG-AGCAAAGTTTTATTATTAC
68817630 CTTTTGTACG
Statistics
Matches: 133, Mismatches: 18, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
95 2 0.02
96 12 0.09
97 110 0.83
98 9 0.07
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.38
Consensus pattern (97 bp):
GTTTTATTAATACCTTCCGTAAGCCTCCCCCTACGCATCTAGGAGCAAAGTTTTATTATTACTTC
CCTAAGCCTCCTCTCACACATTTGGGAGAAGG
Found at i:68817630 original size:97 final size:97
Alignment explanation
Indices: 68817415--68817632 Score: 252
Period size: 97 Copynumber: 2.2 Consensus size: 97
68817405 TATGCGTTTG
* *
68817415 GGAGCAAAGTTTTATTATTA-CTTCCCTAAGCCTCCCTCAATACATTTGGGAGTAAGGTTTTGTT
1 GGAGCAAAGTTTTATTATTACCTTCCCTAAGCCTCCCTCAACACATTTGGGAGTAAGGTTTTATT
* *
68817479 ATTACCTTCCGTAAGCTTCCCCCTACGCATCTA
66 AATACCTTCCGTAAGCCTCCCCCTAC-CATCTA
* *
68817512 GGAG-AAAGGTTTTATTATTACCTT-CGTAAGCCTCCTCTC-ACACGTTTGGGAG-AAGGGTTTT
1 GGAGCAAA-GTTTTATTATTACCTTCCCTAAGCCTCC-CTCAACACATTTGGGAGTAA-GGTTTT
* *
68817573 ATTAATACCTTCTGTAAGCCTCCCATCGTA-CATCT-
63 ATTAATACCTTCCGTAAGCCTCCC--CCTACCATCTA
68817608 GGAAGCAAAGTTTTATTATTACCTT
1 GG-AGCAAAGTTTTATTATTACCTT
68817633 TTGTACGTGT
Statistics
Matches: 105, Mismatches: 8, Indels: 16
0.81 0.06 0.12
Matches are distributed among these distances:
96 7 0.07
97 86 0.82
98 9 0.09
99 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (97 bp):
GGAGCAAAGTTTTATTATTACCTTCCCTAAGCCTCCCTCAACACATTTGGGAGTAAGGTTTTATT
AATACCTTCCGTAAGCCTCCCCCTACCATCTA
Found at i:68820188 original size:18 final size:18
Alignment explanation
Indices: 68820165--68820202 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
68820155 TAGCCGTGTG
*
68820165 TTCTTTCTCTTCTTTTCT
1 TTCTTTCTCTTCTTTCCT
*
68820183 TTCTTTCTTTTCTTTCCT
1 TTCTTTCTCTTCTTTCCT
68820201 TT
1 TT
68820203 TTAATTTGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (18 bp):
TTCTTTCTCTTCTTTCCT
Found at i:68823327 original size:30 final size:32
Alignment explanation
Indices: 68823273--68823345 Score: 78
Period size: 30 Copynumber: 2.3 Consensus size: 32
68823263 CAATTATTAG
* * * *
68823273 ATAATATATATAAATTTTATGTTAT-TTAT-T
1 ATAACATATATAAATATTAAGTTATCATATAT
*
68823303 ATAACATATATATATATTAAGTTATCATATAT
1 ATAACATATATAAATATTAAGTTATCATATAT
*
68823335 ATAACACATAT
1 ATAACATATAT
68823346 CATTAATGTC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
30 21 0.60
31 3 0.09
32 11 0.31
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (32 bp):
ATAACATATATAAATATTAAGTTATCATATAT
Found at i:68828321 original size:21 final size:20
Alignment explanation
Indices: 68828281--68828322 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
68828271 GGATTTAGAA
*
68828281 TTGAATTATAAATTTATTTT
1 TTGAATTATAAATGTATTTT
68828301 TTGAGATTA-AAATGTATTTT
1 TTGA-ATTATAAATGTATTTT
68828321 TT
1 TT
68828323 ATTAAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (20 bp):
TTGAATTATAAATGTATTTT
Found at i:68829222 original size:6 final size:6
Alignment explanation
Indices: 68829204--68829242 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
68829194 GTTGAGTTCA
*
68829204 AATCTC AACCTC AATCTC AATCTC AATCTC AATCTC AAT
1 AATCTC AATCTC AATCTC AATCTC AATCTC AATCTC AAT
68829243 ACATACATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.31
Consensus pattern (6 bp):
AATCTC
Found at i:68830719 original size:19 final size:18
Alignment explanation
Indices: 68830691--68830726 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
68830681 AAGTTACCTT
68830691 CTTTGTTTCTGGTTTTGA
1 CTTTGTTTCTGGTTTTGA
*
68830709 CTTTGGTTTCTGTTTTTG
1 CTTT-GTTTCTGGTTTTG
68830727 TTTGTGGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.03, C:0.11, G:0.22, T:0.64
Consensus pattern (18 bp):
CTTTGTTTCTGGTTTTGA
Found at i:68833864 original size:10 final size:11
Alignment explanation
Indices: 68833827--68833863 Score: 65
Period size: 11 Copynumber: 3.3 Consensus size: 11
68833817 TTCATTTTCT
68833827 AAAAGCAAAAAA
1 AAAAG-AAAAAA
68833839 AAAAGAAAAAA
1 AAAAGAAAAAA
68833850 AAAAGAAAAAA
1 AAAAGAAAAAA
68833861 AAA
1 AAA
68833864 GGTTTGGCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 20 0.80
12 5 0.20
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAA
Found at i:68841600 original size:2 final size:2
Alignment explanation
Indices: 68841528--68841583 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
68841518 TACTCTGTAC
68841528 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
68841570 GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA
68841584 CTTGATGAAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:68842257 original size:25 final size:27
Alignment explanation
Indices: 68842201--68842257 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
68842191 TTCTTCAATA
**
68842201 TAATTATTATAGGTATTTTAATAAATT
1 TAATTATTATAAATATTTTAATAAATT
*
68842228 AAATTATTATAAATA-TTT-ATAAATT
1 TAATTATTATAAATATTTTAATAAATT
68842253 TAATT
1 TAATT
68842258 TAAGTTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 11 0.42
26 3 0.12
27 12 0.46
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.51
Consensus pattern (27 bp):
TAATTATTATAAATATTTTAATAAATT
Found at i:68850799 original size:40 final size:40
Alignment explanation
Indices: 68850726--68850830 Score: 104
Period size: 40 Copynumber: 2.6 Consensus size: 40
68850716 ACTATGTTTG
* * *
68850726 GCACTTAGTGTGCGATTCGAGATAGCTTTGGCTATATAAA
1 GCACTTAGTGTGCGATACGAGATAACTTCGGCTATATAAA
* ***
68850766 GCACTTAGTGTGCGAATAGGA-ATAACTTCGGCTATATGTG
1 GCACTTAGTGTGCG-ATACGAGATAACTTCGGCTATATAAA
* *
68850806 GCACTAAGTGTGTGATACCGAGATA
1 GCACTTAGTGTGCGATA-CGAGATA
68850831 GTTTCGGTTT
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
39 3 0.06
40 42 0.81
41 7 0.13
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (40 bp):
GCACTTAGTGTGCGATACGAGATAACTTCGGCTATATAAA
Found at i:68855193 original size:25 final size:27
Alignment explanation
Indices: 68855156--68855208 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
68855146 TTAAACATGC
68855156 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
68855182 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
68855208 A
1 A
68855209 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:68856727 original size:26 final size:26
Alignment explanation
Indices: 68856697--68856778 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
68856687 TGAAATGCCC
68856697 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
68856723 ATCATGGAACATTTACCGAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
68856749 ATCATGGAACATTTACATAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68856775 ATCA
1 ATCA
68856779 ATTTTTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.37, C:0.26, G:0.09, T:0.29
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:68863250 original size:25 final size:27
Alignment explanation
Indices: 68863213--68863265 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
68863203 TTAAACATGC
68863213 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
68863239 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
68863265 A
1 A
68863266 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:68864783 original size:26 final size:26
Alignment explanation
Indices: 68864753--68864808 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
68864743 TGAAATGCCC
68864753 ATCATGAAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
68864779 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
68864805 ATCA
1 ATCA
68864809 ATTTTTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:68873940 original size:14 final size:14
Alignment explanation
Indices: 68873921--68873954 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
68873911 GCTTATTATA
68873921 TGTGAATTAATATT
1 TGTGAATTAATATT
68873935 TGTGAATTAATATT
1 TGTGAATTAATATT
68873949 TGTGAA
1 TGTGAA
68873955 AATTCTGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (14 bp):
TGTGAATTAATATT
Found at i:68875185 original size:43 final size:43
Alignment explanation
Indices: 68875074--68875207 Score: 123
Period size: 43 Copynumber: 3.1 Consensus size: 43
68875064 AGGTCACATC
* * *
68875074 TGGGAT-GTTGGCATCGAT-TTGAGATTTACATGCAAGACGATGTT
1 TGGGATAG-TGGCATCGATATT-TGATTT-CATGTAAGACCATGTT
* * *
68875118 TGGGACA-TCGGTATCG-TAATTGATTTCATGTAAGACCATGTT
1 TGGGATAGT-GGCATCGATATTTGATTTCATGTAAGACCATGTT
* * *
68875160 TGGGATAGTGGCATCGATATTTGATTACATGTAAGACCACGTC
1 TGGGATAGTGGCATCGATATTTGATTTCATGTAAGACCATGTT
68875203 TGGGA
1 TGGGA
68875208 CGTTGCATTG
Statistics
Matches: 73, Mismatches: 12, Indels: 11
0.76 0.12 0.11
Matches are distributed among these distances:
42 26 0.36
43 35 0.48
44 12 0.16
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (43 bp):
TGGGATAGTGGCATCGATATTTGATTTCATGTAAGACCATGTT
Found at i:68878047 original size:30 final size:30
Alignment explanation
Indices: 68878013--68878079 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
68878003 ACTAGGGGAT
68878013 ACACGGCCGTGTAACATGCCCGTGTATCAC
1 ACACGGCCGTGTAACATGCCCGTGTATCAC
* ** *
68878043 ACACGACCGTGTAACATGCTTGTGTATCTC
1 ACACGGCCGTGTAACATGCCCGTGTATCAC
68878073 ACACGGC
1 ACACGGC
68878080 TGAGACACAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.24, C:0.31, G:0.22, T:0.22
Consensus pattern (30 bp):
ACACGGCCGTGTAACATGCCCGTGTATCAC
Found at i:68895817 original size:45 final size:45
Alignment explanation
Indices: 68895750--68895983 Score: 323
Period size: 45 Copynumber: 5.2 Consensus size: 45
68895740 CGGACTTCGG
68895750 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
*
68895795 GCCTAGCAGGCTATGATACCGGTGAAATACTATTCGGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
* *
68895840 GCCTAGCAGGCTATGATGCCGGTGAGATATTATTCGGGCCTTTGA
1 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
* * * *
68895885 GCCTAGCAGGCTATAATGCTGGTGAGATACTATTCAGG-CTTTCGA
1 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTT-GA
* * *
68895930 GCCTAGCAGGCTATAATGCCGGTAAAATGA-TA-TCGGGCC-TCGA
1 GCCTAGCAGGCTATGATGCCGGTGAAAT-ACTATTCGGGCCTTTGA
*
68895973 GCTTAGCAGGC
1 GCCTAGCAGGC
68895984 GAAATGCCAG
Statistics
Matches: 172, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
43 12 0.07
44 9 0.05
45 150 0.87
46 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (45 bp):
GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
Found at i:68896804 original size:28 final size:28
Alignment explanation
Indices: 68896764--68896820 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
68896754 TAAGTCGGGC
68896764 AACACCTCGAACCCTGTTCCGGTGAGGG
1 AACACCTCGAACCCTGTTCCGGTGAGGG
68896792 AACACCTCGAACCCTGTTCCGGTGAGGG
1 AACACCTCGAACCCTGTTCCGGTGAGGG
68896820 A
1 A
68896821 TACGGGCGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.18
Consensus pattern (28 bp):
AACACCTCGAACCCTGTTCCGGTGAGGG
Found at i:68902263 original size:40 final size:40
Alignment explanation
Indices: 68902208--68902385 Score: 245
Period size: 40 Copynumber: 4.5 Consensus size: 40
68902198 TGGATGATAA
* * * *
68902208 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTA-TAT
68902248 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
68902288 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
68902328 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
68902368 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
68902386 TACTTGGCTT
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 16 0.13
40 111 0.87
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:68914761 original size:40 final size:40
Alignment explanation
Indices: 68914706--68914887 Score: 258
Period size: 40 Copynumber: 4.6 Consensus size: 40
68914696 TATTCGGATG
* *
68914706 ATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
68914746 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
68914786 ATTTCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
68914826 ATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
68914866 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
68914888 TACTTGGTTT
Statistics
Matches: 126, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 14 0.11
40 112 0.89
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:68926193 original size:27 final size:27
Alignment explanation
Indices: 68926152--68926205 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
68926142 TGTCATGTGA
* * *
68926152 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGACAAATTACTATTACATG
*
68926179 AATTGAATGATAAATTACTATTACATG
1 AATTGAATGACAAATTACTATTACATG
68926206 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (27 bp):
AATTGAATGACAAATTACTATTACATG
Found at i:68926530 original size:51 final size:50
Alignment explanation
Indices: 68926454--68926585 Score: 194
Period size: 51 Copynumber: 2.6 Consensus size: 50
68926444 TATTGTGAGG
*
68926454 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTA-TCAGAT-ACTTAGA
* ** *
68926505 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATACTTAGA
68926555 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
68926586 CATGTACTGG
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
50 36 0.48
51 39 0.52
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGATACTTAGA
Found at i:68926580 original size:50 final size:51
Alignment explanation
Indices: 68926451--68926637 Score: 204
Period size: 50 Copynumber: 3.7 Consensus size: 51
68926441 ATCTATTGTG
68926451 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTT
* * * **
68926502 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTA-TCAGAT-GGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACTT
*** *
68926552 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTGGATAA-TT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTT
* ** *
68926602 -GGTCGA-ATGTGTAGTACTAAGTATAGACTACTATGC
1 AGGTC-ACGTGTGTAGTACTAAGTGCAGGCTACTATGC
68926638 ATACCAGATA
Statistics
Matches: 114, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
49 27 0.24
50 46 0.40
51 41 0.36
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (51 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTT
Found at i:68928385 original size:14 final size:14
Alignment explanation
Indices: 68928366--68928400 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
68928356 TGTTTCACTA
*
68928366 AAAATGGTTTTCAG
1 AAAATGATTTTCAG
*
68928380 AAAATGATTTTTAG
1 AAAATGATTTTCAG
68928394 AAAATGA
1 AAAATGA
68928401 CTTACTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.46, C:0.03, G:0.17, T:0.34
Consensus pattern (14 bp):
AAAATGATTTTCAG
Found at i:68931810 original size:22 final size:22
Alignment explanation
Indices: 68931772--68931813 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
68931762 GGGTGGACTG
68931772 TTTTGGGGAGAAGATTAAGGGA
1 TTTTGGGGAGAAGATTAAGGGA
*
68931794 TTTTGGTGAGGAA-ATTAAGG
1 TTTTGGGGA-GAAGATTAAGG
68931814 AGTGAGGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (22 bp):
TTTTGGGGAGAAGATTAAGGGA
Found at i:68950395 original size:43 final size:44
Alignment explanation
Indices: 68950348--68950431 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
68950338 TCCTAGACGT
* *
68950348 GGTCTTACATGT-AAT-TCAATATCGATGCCTCTGTCCCAGATAG
1 GGTCTTACACGTAAATCTCAA-ATCGAGGCCTCTGTCCCAGATAG
*
68950391 GGTCTTACACGTAAATCTCAAATCGAGGCCTGTGTCCCAGA
1 GGTCTTACACGTAAATCTCAAATCGAGGCCTCTGTCCCAGA
68950432 CACAGTCTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 11 0.31
44 21 0.58
45 4 0.11
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (44 bp):
GGTCTTACACGTAAATCTCAAATCGAGGCCTCTGTCCCAGATAG
Found at i:68950440 original size:44 final size:43
Alignment explanation
Indices: 68950349--68950442 Score: 109
Period size: 44 Copynumber: 2.2 Consensus size: 43
68950339 CCTAGACGTG
* * * **
68950349 GTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGATAGG
1 GTCTTACACGTAATTCAATATCGAGGCCTCTGTCCCAGACACA
*
68950392 GTCTTACACGTAAATCTCAA-ATCGAGGCCTGTGTCCCAGACACA
1 GTCTTACACGT-AAT-TCAATATCGAGGCCTCTGTCCCAGACACA
68950436 GTCTTAC
1 GTCTTAC
68950443 GCGATATTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
43 10 0.23
44 29 0.67
45 4 0.09
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.29
Consensus pattern (43 bp):
GTCTTACACGTAATTCAATATCGAGGCCTCTGTCCCAGACACA
Done.