Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 212 of 325
Found at i:68954439 original size:12 final size:12
Alignment explanation
Indices: 68954422--68954447 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
68954412 ACCGAGTACT
68954422 AATTCAATGCCA
1 AATTCAATGCCA
68954434 AATTCAATGCCA
1 AATTCAATGCCA
68954446 AA
1 AA
68954448 CTCAGCTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (12 bp):
AATTCAATGCCA
Found at i:68961439 original size:42 final size:43
Alignment explanation
Indices: 68961360--68961469 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 43
68961350 CAATGTCGAC
* * * **
68961360 GTCCCAAACGTGGTCTTACATGTAATTCAGTATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCGAT
*
68961403 GTCTCAGACA-GTGTCTTACACG-AATTCAG-ATACGATGCCGAT
1 GTCCCAGACATG-GTCTTACACGTAATTCAGTAT-CGATGCCGAT
68961445 GTCCCAGACATGGTCTTACACGTAA
1 GTCCCAGACATGGTCTTACACGTAA
68961470 ATCTCAAATC
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
41 2 0.04
42 35 0.62
43 19 0.34
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCGAT
Found at i:68963261 original size:48 final size:49
Alignment explanation
Indices: 68962993--68963310 Score: 220
Period size: 48 Copynumber: 6.6 Consensus size: 49
68962983 TGAGATCTTA
* * *
68962993 TGTAAGACCATGTCTGGGACATGGCATCGGCATCCGAGATGA-GAGCCAG
1 TGTAAGACCATGTCTGGGATATGGCATCGGCAT-CGATATGAGGTGCCAG
* * * * ** * *
68963042 TGTAAAACCATGTCTGGGAAATGGCATTGGCGTTAATATG-TGTGCCAA
1 TGTAAGACCATGTCTGGGATATGGCATCGGCATCGATATGAGGTGCCAG
* * * **
68963090 TGTAAGACCATGTCTGAGATATGGCATCGGCGTTGATATG-TTTGCCAG
1 TGTAAGACCATGTCTGGGATATGGCATCGGCATCGATATGAGGTGCCAG
* * * * * *
68963138 TGTAAGACTATATTTAGGATATGGCATCGGCATC-AGTATGAGATCCCA-
1 TGTAAGACCATGTCTGGGATATGGCATCGGCATCGA-TATGAGGTGCCAG
* * * * *
68963186 TGTAAGACCATATCTAGGATATGGCATTGGCATCGCTATGAGGT-CCAT
1 TGTAAGACCATGTCTGGGATATGGCATCGGCATCGATATGAGGTGCCAG
* * * * * * *
68963234 TGCAAGACCATGTCTGGGACATGGCATTGACATCGACATGAGACT-TC-G
1 TGTAAGACCATGTCTGGGATATGGCATCGGCATCGATATGAG-GTGCCAG
* * *
68963282 TATTAGACCATATCTGGGATATGGCATCG
1 TGTAAGACCATGTCTGGGATATGGCATCG
68963311 ATATGTAGAC
Statistics
Matches: 216, Mismatches: 47, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
47 4 0.02
48 177 0.82
49 35 0.16
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGGATATGGCATCGGCATCGATATGAGGTGCCAG
Found at i:68971030 original size:48 final size:48
Alignment explanation
Indices: 68970959--68971131 Score: 231
Period size: 48 Copynumber: 3.6 Consensus size: 48
68970949 GATGAGAGCT
* *
68970959 AGTGCAAGACCATGTCTGAGACATGGCATCGGAGTTAATATGTGTGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGAGTTAATATGTGTGCC
*
68971007 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-TTAATATGTGTGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-AGTTAATATGTGTGCC
* * * * *
68971055 AGTGTAAGACCATGTCTGGAACATGGCATCGGCGTTGATATGTGTACT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGAGTTAATATGTGTGCC
* * *
68971103 AGTGTAAGACTATATCTGGGATATGGCAT
1 AGTGTAAGACCATGTCTGGGACATGGCAT
68971132 TAGCATCAGT
Statistics
Matches: 110, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
48 109 0.99
49 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGAGTTAATATGTGTGCC
Found at i:68971096 original size:96 final size:96
Alignment explanation
Indices: 68970912--68971232 Score: 288
Period size: 96 Copynumber: 3.3 Consensus size: 96
68970902 TGAGATCTCA
* * * * * * * *
68970912 TGTAAAACCATGTCTGGGACATGGAATTGGCATATGAGATGAGAGCTAGTGCAAGACCATGTCT-
1 TGTAAGACCATGTCTGGGACATGGCATCGGCAT-TAATATGAGTGCCAGTGTAAGACCATGTCTG
* *
68970976 GAGACATGGCATCGGAGTTAATATGTGTGCCAG
65 GA-ACATGGCATCGGCGTTGATATGTGTGCCAG
* *
68971009 TGTAAGACCATGTTTGGGACATGGCATCGGCATTAATATGTGTGCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGAGTGCCAGTGTAAGACCATGTCTGG
* *
68971074 AACATGGCATCGGCGTTGATATGTGTACTAG
66 AACATGGCATCGGCGTTGATATGTGTGCCAG
* * * ** * * * *
68971105 TGTAAGACTATATCTGGGATATGGCATTAGCATCAGTATGAGATTCCA-TGTAAGACCATATCTA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGAG-TGCCAGTGTAAGACCATGTCT-
* * * * * * * * *
68971169 GG-ATATGGCATTGCCATCGCTATGAGGGCCCG
64 GGAACATGGCATCGGCGTTGATATGTGTGCCAG
*
68971201 TGTAAGACCGTGTCTGGGACATGGCATCGGCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCA
68971233 CCGACATGAG
Statistics
Matches: 179, Mismatches: 42, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
96 142 0.79
97 37 0.21
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCATTAATATGAGTGCCAGTGTAAGACCATGTCTGG
AACATGGCATCGGCGTTGATATGTGTGCCAG
Found at i:68971205 original size:48 final size:48
Alignment explanation
Indices: 68971104--68971227 Score: 135
Period size: 48 Copynumber: 2.6 Consensus size: 48
68971094 ATGTGTACTA
* **
68971104 GTGTAAGACTATATCTGGGATATGGCATTAGCATCAGTATGAGATTCC
1 GTGTAAGACCATATCTGGGATATGGCATTAGCATCAGTATGAGAGCCC
* * *
68971152 ATGTAAGACCATATCTAGGATATGGCATT-GCCATC-GCTATGAGGGCCC
1 GTGTAAGACCATATCTGGGATATGGCATTAG-CATCAG-TATGAGAGCCC
* * *
68971200 GTGTAAGACCGTGTCTGGGACATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
68971228 CGGCACCGAC
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
47 2 0.03
48 61 0.97
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATATCTGGGATATGGCATTAGCATCAGTATGAGAGCCC
Found at i:68973200 original size:19 final size:19
Alignment explanation
Indices: 68973178--68973216 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
68973168 TTTTTTCGTG
*
68973178 TCACAATGTAATTTTTTTT
1 TCACAATGCAATTTTTTTT
68973197 TCACAATGCAATTTTTTTT
1 TCACAATGCAATTTTTTTT
68973216 T
1 T
68973217 ACTTTGGGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.56
Consensus pattern (19 bp):
TCACAATGCAATTTTTTTT
Found at i:68981760 original size:47 final size:47
Alignment explanation
Indices: 68981706--68981852 Score: 195
Period size: 47 Copynumber: 3.1 Consensus size: 47
68981696 TTAGGATTTT
** *
68981706 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
68981753 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * * * *
68981800 ATGTGGTGAATATGAACATGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
68981847 ATGTGA
1 ATGTGA
68981853 AATATGTATG
Statistics
Matches: 85, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 85 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:68981808 original size:25 final size:25
Alignment explanation
Indices: 68981735--68981808 Score: 59
Period size: 23 Copynumber: 3.1 Consensus size: 25
68981725 GTATATATGA
*
68981735 GATAAGGCCGAATGGCCAATGTGAT
1 GATAAGGCCGAATGGCCAATGTGGT
* * *
68981760 GA-ATGTG-AGCAT-G-CATATGT-GT
1 GATAAG-GCCGAATGGCCA-ATGTGGT
68981782 GATAAGGCCGAATGGCCAATGTGGT
1 GATAAGGCCGAATGGCCAATGTGGT
68981807 GA
1 GA
68981809 ATATGAACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 14
0.62 0.12 0.25
Matches are distributed among these distances:
22 6 0.17
23 10 0.29
24 10 0.29
25 9 0.26
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.23
Consensus pattern (25 bp):
GATAAGGCCGAATGGCCAATGTGGT
Found at i:68981885 original size:48 final size:48
Alignment explanation
Indices: 68981822--68982005 Score: 307
Period size: 48 Copynumber: 3.8 Consensus size: 48
68981812 TGAACATGTA
68981822 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
68981870 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
68981918 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATGTAT-GAGATATG
*
68981967 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
68982006 GGCGATGTGC
Statistics
Matches: 127, Mismatches: 6, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
47 1 0.01
48 84 0.66
49 41 0.32
50 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:68981987 original size:97 final size:96
Alignment explanation
Indices: 68981823--68982005 Score: 314
Period size: 97 Copynumber: 1.9 Consensus size: 96
68981813 GAACATGTAT
*
68981823 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
68981888 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
68981919 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATAGATATGTATATGTGGTAAAGCC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAATATATAT-GAGATATGTATATGTGGTAAAGCC
*
68981983 GAATGGCTAGTGTGAAATATGTA
64 GAATGGCTAATGTGAAATATGTA
68982006 GGCGATGTGC
Statistics
Matches: 82, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
95 1 0.01
96 36 0.44
97 45 0.55
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:68982202 original size:37 final size:37
Alignment explanation
Indices: 68982152--68982223 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
68982142 GGAAATATAT
*
68982152 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
68982189 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
68982224 CGTCTGAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:68983509 original size:15 final size:15
Alignment explanation
Indices: 68983489--68983540 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
68983479 ACTACAAAAA
68983489 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
68983504 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
68983523 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
68983538 ATT
1 ATT
68983541 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:68983597 original size:16 final size:16
Alignment explanation
Indices: 68983573--68983609 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
68983563 ATGTGAATAA
68983573 TATTATTTAAATTTAT
1 TATTATTTAAATTTAT
*
68983589 TATTTTTTAAATTTAT
1 TATTATTTAAATTTAT
68983605 TATTA
1 TATTA
68983610 AAATAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTATTTAAATTTAT
Found at i:68983659 original size:22 final size:22
Alignment explanation
Indices: 68983633--68983676 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
68983623 ATATTAAATA
68983633 ATTTATTAAAATAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
* *
68983655 ATTTATTATATTAATAATTTAT
1 ATTTATTAAAATAATAATTTAT
68983677 TATAAGACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTTATTAAAATAATAATTTAT
Found at i:68983662 original size:34 final size:33
Alignment explanation
Indices: 68983581--68983662 Score: 80
Period size: 31 Copynumber: 2.5 Consensus size: 33
68983571 AATATTATTT
* *
68983581 AAATTTATTATTTTTTAAATTTATTATTAAAATA
1 AAATTTA-TATTTATTAAATATATTATTAAAATA
* *
68983615 AAATTGA-A-ATATTAAATA-ATTTATTAAAATA
1 AAATTTATATTTATTAAATATA-TTATTAAAATA
68983646 ATAATTTATATTTATTA
1 A-AATTTATATTTATTA
68983663 TATTAATAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
30 1 0.03
31 19 0.50
32 6 0.16
33 1 0.03
34 11 0.29
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (33 bp):
AAATTTATATTTATTAAATATATTATTAAAATA
Found at i:68983674 original size:72 final size:75
Alignment explanation
Indices: 68983504--68983679 Score: 173
Period size: 72 Copynumber: 2.3 Consensus size: 75
68983494 TTATTAATAT
* * * *
68983504 ATTTATAATTGTAATAAATATTTATTATTAAAATATTAATATTGAATATTTTCAATAATATGTGA
1 ATTTATTATT-TAAT-AA-ATTTATTATTAAAATA-TAATATTGAATATATTAAATAATATATGA
*
68983569 ATAATATTATTTAA
62 ATAATATAATTTAA
** * *
68983583 ATTTATTATTTTTTAAATTTATTATTAAAATA-AA-ATTGAA-ATATTAAATAATTTATTAA-AA
1 ATTTATTATTTAATAAATTTATTATTAAAATATAATATTGAATATATTAAATAATATATGAATAA
*
68983644 TAATAATTTAT
66 T-ATAATTTAA
68983655 ATTTATTATATTAAT-AATTTATTAT
1 ATTTATTAT-TTAATAAATTTATTAT
68983680 AAGACTAAAT
Statistics
Matches: 83, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
71 3 0.04
72 40 0.48
73 9 0.11
74 2 0.02
76 16 0.19
77 2 0.02
78 2 0.02
79 9 0.11
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.51
Consensus pattern (75 bp):
ATTTATTATTTAATAAATTTATTATTAAAATATAATATTGAATATATTAAATAATATATGAATAA
TATAATTTAA
Found at i:68989880 original size:90 final size:90
Alignment explanation
Indices: 68989752--68989980 Score: 381
Period size: 90 Copynumber: 2.6 Consensus size: 90
68989742 TATGGATTAA
* *
68989752 ATTAAATTTACAGATA-CAAAAAATACAAACATTCTAAGAAATTAATACATGAAAATATAAAAAT
1 ATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
*
68989816 GAGACCTTAAATCCTAAACAACTAT
66 GAGACCTTAAATCCTAAACAACTAC
68989841 ATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
1 ATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
*
68989906 GATACCTTAAATCCTAAACAACTAC
66 GAGACCTTAAATCCTAAACAACTAC
* *
68989931 ATTAAATTTACAGGTATAAAAAAATACAAACATTTTAATGAAA-TAATACA
1 ATTAAATTTACAGATATAAAAAAATACAAACATTCTAA-GAAATTAATACA
68989981 ATTATTTTGA
Statistics
Matches: 132, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
89 16 0.12
90 112 0.85
91 4 0.03
ACGTcount: A:0.55, C:0.13, G:0.05, T:0.27
Consensus pattern (90 bp):
ATTAAATTTACAGATATAAAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAAAAT
GAGACCTTAAATCCTAAACAACTAC
Found at i:68992262 original size:56 final size:56
Alignment explanation
Indices: 68992154--68992396 Score: 257
Period size: 56 Copynumber: 4.4 Consensus size: 56
68992144 TTACTGCTCG
** * *
68992154 CATGCTGTCACAAATTGAATTAAAGCTGTTGTTTTGATTGTTTCAAATTGAGCATTTT
1 CATGCTGTCTTAAATTGAATT-AAGCTGCTGTTTT-AGTGTTTCAAATTGAGCATTTT
* * * *
68992212 CATACTGTCTTAAATTGAATCAAGCTGCTGCTTTAGTGTTTCAAAGTGAGCATTTT
1 CATGCTGTCTTAAATTGAATTAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
* * * *
68992268 CATGCTGTCATAAATTGAATTAA-----AG-TTTAGTGTATCAAATTTAGCATTTT
1 CATGCTGTCTTAAATTGAATTAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
* * *
68992318 CATGCTGTCTTAAATTAAATTAAGCTGCTGTTTTAATGTTTCAAATTGAGTATTATT
1 CATGCTGTCTTAAATTGAATTAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATT-TT
* *
68992375 -ATGCTGTCCTAAATTAAATTAA
1 CATGCTGTCTTAAATTGAATTAA
68992397 AGTGTTGCTT
Statistics
Matches: 155, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
50 43 0.28
51 1 0.01
55 1 0.01
56 80 0.52
57 13 0.08
58 17 0.11
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (56 bp):
CATGCTGTCTTAAATTGAATTAAGCTGCTGTTTTAGTGTTTCAAATTGAGCATTTT
Found at i:68992318 original size:50 final size:50
Alignment explanation
Indices: 68992243--68992340 Score: 151
Period size: 50 Copynumber: 2.0 Consensus size: 50
68992233 AAGCTGCTGC
* *
68992243 TTTAGTGTTTCAAAGTGAGCATTTTCATGCTGTCATAAATTGAATTAAAG
1 TTTAGTGTATCAAAGTGAGCATTTTCATGCTGTCATAAATTAAATTAAAG
* * *
68992293 TTTAGTGTATCAAATTTAGCATTTTCATGCTGTCTTAAATTAAATTAA
1 TTTAGTGTATCAAAGTGAGCATTTTCATGCTGTCATAAATTAAATTAA
68992341 GCTGCTGTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (50 bp):
TTTAGTGTATCAAAGTGAGCATTTTCATGCTGTCATAAATTAAATTAAAG
Found at i:68992381 original size:106 final size:106
Alignment explanation
Indices: 68992196--68992399 Score: 302
Period size: 106 Copynumber: 1.9 Consensus size: 106
68992186 TTTGATTGTT
* *
68992196 TCAAATTGAGCATTTTCATACTGTCTTAAATTGAATCAAGCTGCTGCTTTAGTGTTTCAAAGTGA
1 TCAAATTGAGCATTTTCATACTGTCTTAAATTAAATCAAGCTGCTGCTTTAATGTTTCAAAGTGA
*
68992261 GCATTTTCATGCTGTCATAAATTGAATTAAAGTTTAGTGTA
66 GCATTTTCATGCTGTCATAAATTAAATTAAAGTTTAGTGTA
* * * * *
68992302 TCAAATTTAGCATTTTCATGCTGTCTTAAATTAAATTAAGCTGCTGTTTTAATGTTTCAAATTGA
1 TCAAATTGAGCATTTTCATACTGTCTTAAATTAAATCAAGCTGCTGCTTTAATGTTTCAAAGTGA
* *
68992367 GTATTATT-ATGCTGTCCTAAATTAAATTAAAGT
66 GCATT-TTCATGCTGTCATAAATTAAATTAAAGT
68992400 GTTGCTTCAA
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
106 85 0.98
107 2 0.02
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (106 bp):
TCAAATTGAGCATTTTCATACTGTCTTAAATTAAATCAAGCTGCTGCTTTAATGTTTCAAAGTGA
GCATTTTCATGCTGTCATAAATTAAATTAAAGTTTAGTGTA
Found at i:68992429 original size:56 final size:56
Alignment explanation
Indices: 68992192--68992435 Score: 159
Period size: 56 Copynumber: 4.5 Consensus size: 56
68992182 TTGTTTTGAT
* * * * * * * *
68992192 TGTTTCAAATTGAGCATT-TTCATACTGTCTTAAATTGAATCAAGCTGCTGCTTTAG
1 TGTTTCAAAGTAAGCATTATT-ATGCTGTCCTAAATTAAATTAAGCTGCTGCTTCAA
* * * * *
68992248 TGTTTCAAAGTGAGCATT-TTCATGCTGTCATAAATTGAATTAA--AG-T--TT-AG
1 TGTTTCAAAGTAAGCATTATT-ATGCTGTCCTAAATTAAATTAAGCTGCTGCTTCAA
* * * * * *
68992298 TGTATCAAATTTAGCATT-TTCATGCTGTCTTAAATTAAATTAAGCTGCTGTTTTAA
1 TGTTTCAAAGTAAGCATTATT-ATGCTGTCCTAAATTAAATTAAGCTGCTGCTTCAA
* * * *
68992354 TGTTTCAAATTGAGTATTATTATGCTGTCCTAAATTAAATTAAAG-TGTTGCTTCAA
1 TGTTTCAAAGTAAGCATTATTATGCTGTCCTAAATTAAATT-AAGCTGCTGCTTCAA
68992410 TGTCTT-AAAGTAAGCATTATTATGCT
1 TGT-TTCAAAGTAAGCATTATTATGCT
68992436 ATTGAAAAAT
Statistics
Matches: 157, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
50 40 0.25
51 2 0.01
52 1 0.01
53 2 0.01
54 1 0.01
55 2 0.01
56 102 0.65
57 7 0.04
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (56 bp):
TGTTTCAAAGTAAGCATTATTATGCTGTCCTAAATTAAATTAAGCTGCTGCTTCAA
Found at i:68994293 original size:15 final size:16
Alignment explanation
Indices: 68994273--68994305 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
68994263 ATATATATTT
68994273 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
68994288 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
68994305 T
1 T
68994306 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:69000172 original size:16 final size:16
Alignment explanation
Indices: 69000151--69000181 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69000141 AAACCTTCTT
*
69000151 CTTTTTTTTTCTTTTG
1 CTTTTTTTATCTTTTG
69000167 CTTTTTTTATCTTTT
1 CTTTTTTTATCTTTT
69000182 TAGAAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.03, T:0.81
Consensus pattern (16 bp):
CTTTTTTTATCTTTTG
Found at i:69002638 original size:17 final size:18
Alignment explanation
Indices: 69002618--69002659 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
69002608 TAACCAACTA
69002618 ACTAA-AAAAGAAAAT-AT
1 ACTAATAAAA-AAAATAAT
*
69002635 ACTAATAATAAAAATAAT
1 ACTAATAAAAAAAATAAT
69002653 ACTAATA
1 ACTAATA
69002660 GTAAACCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24
Consensus pattern (18 bp):
ACTAATAAAAAAAATAAT
Found at i:69002656 original size:18 final size:17
Alignment explanation
Indices: 69002628--69002664 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
69002618 ACTAAAAAAG
69002628 AAAATATACTAATAATA
1 AAAATATACTAATAATA
*
69002645 AAAATAATACTAATAGTA
1 AAAAT-ATACTAATAATA
69002663 AA
1 AA
69002665 CCACTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (17 bp):
AAAATATACTAATAATA
Found at i:69002854 original size:28 final size:28
Alignment explanation
Indices: 69002796--69002859 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 28
69002786 CAATAACAGC
*
69002796 ATATTAATAAGAATAACAACAAATAATA
1 ATATTAATAAGAATAACAACAAACAATA
* *
69002824 ATATTAATAATAATAACAA-TAACAATA
1 ATATTAATAAGAATAACAACAAACAATA
*
69002851 A-ATAAATAA
1 ATATTAATAA
69002860 ATAAAGGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 7 0.22
27 7 0.22
28 18 0.56
ACGTcount: A:0.66, C:0.06, G:0.02, T:0.27
Consensus pattern (28 bp):
ATATTAATAAGAATAACAACAAACAATA
Found at i:69007245 original size:12 final size:11
Alignment explanation
Indices: 69007223--69007253 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
69007213 AATTTTTTTA
69007223 TAAACTAAAAT
1 TAAACTAAAAT
69007234 TAAACTATAAAT
1 TAAACTA-AAAT
69007246 TAAACTAA
1 TAAACTAA
69007254 CTAAGCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAACTAAAAT
Found at i:69018124 original size:24 final size:24
Alignment explanation
Indices: 69018109--69018160 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
69018099 AATCAAAGTC
69018109 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
69018133 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
69018157 AAAT
1 AAAT
69018161 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:69022110 original size:24 final size:24
Alignment explanation
Indices: 69022048--69022098 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
69022038 TTTCTAGAAG
* *
69022048 ATTTAGTATTTA-TAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
69022071 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
69022095 ATTT
1 ATTT
69022099 GACTTTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 11 0.44
24 14 0.56
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.51
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:69032557 original size:16 final size:15
Alignment explanation
Indices: 69032536--69032597 Score: 51
Period size: 14 Copynumber: 4.1 Consensus size: 15
69032526 AGAAACTAGT
69032536 AAATAGAAATGAAGAA
1 AAATAG-AATGAAGAA
69032552 AAATAG-ATGAA-AA
1 AAATAGAATGAAGAA
*
69032565 GAGAATAGTGATGAAGAA
1 -A-AATAG-AATGAAGAA
69032583 AAATAG-ATGAA-AA
1 AAATAGAATGAAGAA
69032596 AA
1 AA
69032598 GTTGAGAAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
13 6 0.15
14 11 0.27
15 5 0.12
16 11 0.27
17 6 0.15
18 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.21, T:0.15
Consensus pattern (15 bp):
AAATAGAATGAAGAA
Found at i:69032561 original size:14 final size:13
Alignment explanation
Indices: 69032544--69032597 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 13
69032534 GTAAATAGAA
69032544 ATGAAGAAAAATAG
1 ATGAA-AAAAATAG
69032558 ATGAAAAGAGAATAGTG
1 ATGAAAA-A-AATA--G
69032575 ATGAAGAAAAATAG
1 ATGAA-AAAAATAG
69032589 ATGAAAAAA
1 ATGAAAAAA
69032598 GTTGAGAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
13 6 0.17
14 12 0.34
15 4 0.11
16 4 0.11
17 7 0.20
18 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.22, T:0.15
Consensus pattern (13 bp):
ATGAAAAAAATAG
Found at i:69032572 original size:31 final size:31
Alignment explanation
Indices: 69032537--69032595 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
69032527 GAAACTAGTA
69032537 AATAGAAATGAAGAAAAATAGATGAAAAGAG
1 AATAGAAATGAAGAAAAATAGATGAAAAGAG
**
69032568 AATAGTGATGAAGAAAAATAGATGAAAA
1 AATAGAAATGAAGAAAAATAGATGAAAA
69032596 AAGTTGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.63, C:0.00, G:0.22, T:0.15
Consensus pattern (31 bp):
AATAGAAATGAAGAAAAATAGATGAAAAGAG
Found at i:69043326 original size:28 final size:28
Alignment explanation
Indices: 69043286--69043385 Score: 96
Period size: 28 Copynumber: 3.6 Consensus size: 28
69043276 TGCATGACTG
*
69043286 TGAAAGTGATTGGGCCTGACGGGCCATA
1 TGAAAGTGATTGGGCCTGAAGGGCCATA
* *
69043314 TGAAAGTGATTGGGCCT-AATGGCTATA
1 TGAAAGTGATTGGGCCTGAAGGGCCATA
* * * *
69043341 CGAATGTGGTTGGG-CTCGATGGGCCATA
1 TGAAAGTGATTGGGCCT-GAAGGGCCATA
* *
69043369 TGAACGAGATTGGGCCT
1 TGAAAGTGATTGGGCCT
69043386 ATAGGGGCTA
Statistics
Matches: 56, Mismatches: 13, Indels: 5
0.76 0.18 0.07
Matches are distributed among these distances:
26 2 0.04
27 18 0.32
28 34 0.61
29 2 0.04
ACGTcount: A:0.24, C:0.16, G:0.35, T:0.25
Consensus pattern (28 bp):
TGAAAGTGATTGGGCCTGAAGGGCCATA
Found at i:69044033 original size:24 final size:24
Alignment explanation
Indices: 69043999--69044063 Score: 121
Period size: 24 Copynumber: 2.7 Consensus size: 24
69043989 AATCCCCGCA
*
69043999 GGAGTGTAGGGTTGGATGAGATAC
1 GGAGTGCAGGGTTGGATGAGATAC
69044023 GGAGTGCAGGGTTGGATGAGATAC
1 GGAGTGCAGGGTTGGATGAGATAC
69044047 GGAGTGCAGGGTTGGAT
1 GGAGTGCAGGGTTGGAT
69044064 TGGGATTTCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.23, C:0.06, G:0.48, T:0.23
Consensus pattern (24 bp):
GGAGTGCAGGGTTGGATGAGATAC
Found at i:69051001 original size:16 final size:16
Alignment explanation
Indices: 69050980--69051016 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
69050970 AATTGAGTAA
69050980 GTATGGGAAGAACCAG
1 GTATGGGAAGAACCAG
69050996 GTATGGGAAGAACCAG
1 GTATGGGAAGAACCAG
69051012 GTATG
1 GTATG
69051017 TATGATACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.35, C:0.11, G:0.38, T:0.16
Consensus pattern (16 bp):
GTATGGGAAGAACCAG
Found at i:69054870 original size:17 final size:17
Alignment explanation
Indices: 69054848--69054884 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
69054838 TGGCATCGAC
69054848 ACGGCGTTGAAGAGGCT
1 ACGGCGTTGAAGAGGCT
69054865 ACGGCGTTGAAGAGGCT
1 ACGGCGTTGAAGAGGCT
69054882 ACG
1 ACG
69054885 TGGGAGCCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.19, G:0.41, T:0.16
Consensus pattern (17 bp):
ACGGCGTTGAAGAGGCT
Found at i:69056307 original size:42 final size:43
Alignment explanation
Indices: 69056246--69056350 Score: 117
Period size: 42 Copynumber: 2.5 Consensus size: 43
69056236 GATTTGAGAT
* *
69056246 TTACGTGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGA
1 TTACATGTAAGACCATGTCTAGGACAGT-GGCATCGATATTTGA
* * *
69056288 TTTCATGTAAGATCC-TGTCTAGGACAGTGGCATTGATGTTTGA
1 TTACATGTAAGA-CCATGTCTAGGACAGTGGCATCGATATTTGA
*
69056331 TTACATGTAAGACCACGTCT
1 TTACATGTAAGACCATGTCT
69056351 GGGATGTTGA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
42 28 0.54
43 24 0.46
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTAGGACAGTGGCATCGATATTTGA
Found at i:69056365 original size:43 final size:42
Alignment explanation
Indices: 69056207--69056365 Score: 119
Period size: 43 Copynumber: 3.7 Consensus size: 42
69056197 TGTGATTTCG
* *
69056207 TGTAAGACCACGT-TGGGAACGTTGACATTGATTTGAGATTTACG
1 TGTAAGACCACGTCTGGG-ACGTTGACATTGATTT-TGA-TTACA
* * * * * *
69056251 TGTAAGACCATGTCTGGGACATCGGCATCG-TATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGACATTGAT-TTTGATTACA
* * *
69056293 TGTAAGATCC-TGTCTAGGACAG-TGGCATTGATGTTTGATTACA
1 TGTAAGA-CCACGTCTGGGAC-GTTGACATTGAT-TTTGATTACA
*
69056336 TGTAAGACCACGTCTGGGATGTTGACATTG
1 TGTAAGACCACGTCTGGGACGTTGACATTG
69056366 TACGAGCTTT
Statistics
Matches: 90, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
42 28 0.31
43 36 0.40
44 22 0.24
45 4 0.04
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGACATTGATTTTGATTACA
Found at i:69064445 original size:42 final size:41
Alignment explanation
Indices: 69064358--69064520 Score: 161
Period size: 42 Copynumber: 3.9 Consensus size: 41
69064348 TACCGTACCA
* * * *
69064358 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCGTATTG
1 ATGCCATAACCCA-ATATGGTCTTACACG-AAGTCTCATATAG
* *
69064400 ATGCCAATAGCCCAACTATGGTCTTACACG-AGTCTCATATCG
1 ATGCC-ATAACCCAA-TATGGTCTTACACGAAGTCTCATATAG
*
69064442 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATAG
1 ATGCCATAACCCA-ATATGGTCTTACACGAAGTCTCATATAG
**
69064484 ATTTCATAACCCAAATATGGTCTTACACGTAA-TCTCA
1 ATGCCATAACCC-AATATGGTCTTACACG-AAGTCTCA
69064521 GTAACCCTAA
Statistics
Matches: 105, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
41 22 0.21
42 60 0.57
43 23 0.22
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (41 bp):
ATGCCATAACCCAATATGGTCTTACACGAAGTCTCATATAG
Found at i:69064520 original size:84 final size:84
Alignment explanation
Indices: 69064358--69064520 Score: 222
Period size: 84 Copynumber: 1.9 Consensus size: 84
69064348 TACCGTACCA
* * * * *
69064358 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATTGATGCCAATAGCCCAACTATGGTC
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATAGATGCCAATAACCCAAATATGGTC
*
69064423 TTACACGAGTCTCATATCG
66 TTACACGAATCTCATATCG
**
69064442 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATAGATTTC-ATAACCCAAATATGGT
1 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCATATAGATGCCAATAACCCAAATATGGT
69064505 CTTACACGTAATCTCA
65 CTTACACG-AATCTCA
69064521 GTAACCCTAA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
83 24 0.35
84 45 0.65
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (84 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATAGATGCCAATAACCCAAATATGGTC
TTACACGAATCTCATATCG
Found at i:69078368 original size:49 final size:50
Alignment explanation
Indices: 69078286--69078531 Score: 291
Period size: 49 Copynumber: 4.9 Consensus size: 50
69078276 ATCTATTGTG
* *
69078286 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
69078336 -GGTCGCATGTGTAGTACTAAGTGCAGGATACTATGCGTACCCA-ATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATAA-TT
* * * * **
69078386 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
69078436 AGGTCACGTGTGTAGTACTTAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
69078486 -GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
69078532 GCGTTGTTTA
Statistics
Matches: 164, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
49 78 0.48
50 50 0.30
51 36 0.22
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:69085525 original size:27 final size:27
Alignment explanation
Indices: 69085466--69085531 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
69085456 ACCCTAATAT
* * *
69085466 TGGTAAAATTATCGAAATACCCTTGTA
1 TGGTAAAATGACCGAAATACCCCTGTA
*
69085493 -GTGTAAAATGACCGTAATACCCCTGTA
1 TG-GTAAAATGACCGAAATACCCCTGTA
*
69085520 TGGTAAACTGAC
1 TGGTAAAATGAC
69085532 GATTATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
26 1 0.03
27 30 0.94
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (27 bp):
TGGTAAAATGACCGAAATACCCCTGTA
Found at i:69085787 original size:22 final size:22
Alignment explanation
Indices: 69085762--69085806 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
69085752 TGTTACGATA
69085762 TCTACGGCGTTGAGCCGTCCTG
1 TCTACGGCGTTGAGCCGTCCTG
*
69085784 TCTATGGCGTTGAGCCGTCCTG
1 TCTACGGCGTTGAGCCGTCCTG
69085806 T
1 T
69085807 TGACTTAGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.09, C:0.29, G:0.31, T:0.31
Consensus pattern (22 bp):
TCTACGGCGTTGAGCCGTCCTG
Found at i:69092366 original size:18 final size:18
Alignment explanation
Indices: 69092319--69092371 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
69092309 GGCCCATTCT
* * *
69092319 AGTAACAGTAAACAGAGT
1 AGTAACAGTAATCAGTGC
69092337 AGTAACAGTAATCAGTGC
1 AGTAACAGTAATCAGTGC
69092355 AGTAACAGTAATCAGTG
1 AGTAACAGTAATCAGTG
69092372 TGCAAGTCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (18 bp):
AGTAACAGTAATCAGTGC
Found at i:69092828 original size:81 final size:81
Alignment explanation
Indices: 69092690--69093175 Score: 537
Period size: 81 Copynumber: 6.0 Consensus size: 81
69092680 AAACATACAT
* * * *
69092690 CACATAAGGGCAAAATAGTCATCTTACCATATAAGGGAAAAATAGTAATTTTACCACATAACGGC
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGAAAAATAGTAATTTTACCACATAAGGGA
*
69092755 AAAACAGTCTTTTTAC
66 AAAACAGTCATTTTAC
* *
69092771 CATATAAGGGCAAAATAGTAATTTTACCACATAAGGGAAAAATAGTAATTTTACCACATAAGGGA
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGAAAAATAGTAATTTTACCACATAAGGGA
* *
69092836 AAAATAGTAATTTTAC
66 AAAACAGTCATTTTAC
* * * * * * *
69092852 CACATGAGGGCAAAATAGTCACTTTACCATATAAGGGCAACATAGTTATTCTACCACATAAGGGA
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGAAAAATAGTAATTTTACCACATAAGGGA
* * *
69092917 AAAATAGTCAGTCTAC
66 AAAACAGTCATTTTAC
* * * * *
69092933 CACATAAGGGCAAAACA---ATTTTACCACATAAGGGAAAAATAGTTAGTCTACCACATAAGGGC
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGAAAAATAGTAATTTTACCACATAAGGGA
*
69092995 AAAACAATCATTTTAC
66 AAAACAGTCATTTTAC
* * * * *
69093011 CTCATAAGGGCAAAACAATCATTTTACCTCATAAGGGCAAAAGAGTAAGTAATTTTACCCCATAA
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGG-AAAA-A-T-AGTAATTTTACCACATAA
*
69093076 GGGTAAAACAGTCATTTTAC
62 GGGAAAAACAGTCATTTTAC
* * * * * * * * *
69093096 CCCATAAGGGCAAAACAGTCATTTTACCCCATAAAGGCAAAACAGTCATTTTACCCCACAAGGGA
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGAAAAATAGTAATTTTACCACATAAGGGA
* *
69093161 AAAACAATTATTTTA
66 AAAACAGTCATTTTA
69093176 TCAATTAAAG
Statistics
Matches: 346, Mismatches: 52, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
78 67 0.19
81 204 0.59
82 4 0.01
83 2 0.01
84 4 0.01
85 65 0.19
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (81 bp):
CACATAAGGGCAAAATAGTCATTTTACCACATAAGGGAAAAATAGTAATTTTACCACATAAGGGA
AAAACAGTCATTTTAC
Found at i:69093166 original size:27 final size:27
Alignment explanation
Indices: 69092690--69093164 Score: 488
Period size: 27 Copynumber: 17.6 Consensus size: 27
69092680 AAACATACAT
*
69092690 CACATAAGGGCAAAATAGTCATCTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69092717 CATATAAGGGAAAAATAGTAATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69092744 CACATAACGGCAAAACAGTCTTTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69092771 CATATAAGGGCAAAATAGTAATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69092798 CACATAAGGGAAAAATAGTAATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69092825 CACATAAGGGAAAAATAGTAATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69092852 CACATGAGGGCAAAATAGTCACTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * * *
69092879 CATATAAGGGCAACATAGTTATTCTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69092906 CACATAAGGGAAAAATAGTCAGTCTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
*
69092933 CACATAAGGGCAAAACA---ATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * * *
69092957 CACATAAGGGAAAAATAGTTAGTCTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69092984 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69093011 CTCATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69093038 CTCATAAGGGCAAAAGAGTAAGTAATTTTAC
1 CACATAAGGGC-AAA-A-T-AGTCATTTTAC
* * *
69093069 CCCATAAGGGTAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
69093096 CCCATAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69093123 CCCATAAAGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
* * *
69093150 CCCACAAGGGAAAAA
1 CACATAAGGGCAAAA
69093165 CAATTATTTT
Statistics
Matches: 382, Mismatches: 59, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
24 20 0.05
27 336 0.88
28 3 0.01
29 2 0.01
30 3 0.01
31 18 0.05
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.24
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:69113453 original size:23 final size:23
Alignment explanation
Indices: 69113414--69113468 Score: 83
Period size: 23 Copynumber: 2.3 Consensus size: 23
69113404 TTTGGCCTCC
*
69113414 TTCTCTAGGTTCAATTTTTGGTAA
1 TTCT-TAGGTTCAATTTCTGGTAA
*
69113438 TTCTTAGGTTCGATTTCTGGTAA
1 TTCTTAGGTTCAATTTCTGGTAA
69113461 TTCTTAGG
1 TTCTTAGG
69113469 CCAAAAGGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 25 0.86
24 4 0.14
ACGTcount: A:0.18, C:0.13, G:0.20, T:0.49
Consensus pattern (23 bp):
TTCTTAGGTTCAATTTCTGGTAA
Found at i:69114724 original size:34 final size:34
Alignment explanation
Indices: 69114659--69114724 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
69114649 CATACTGTAT
***
69114659 TGAAATGGGCTAAGGCCTAGACTGCCTCTGTTAC
1 TGAAATGGGCTAAGGCCTAGACTGAAACTGTTAC
* *
69114693 TGAAATGGGTTCAGGCCTAGACTGAAACTGTT
1 TGAAATGGGCTAAGGCCTAGACTGAAACTGTT
69114725 TCTCGAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (34 bp):
TGAAATGGGCTAAGGCCTAGACTGAAACTGTTAC
Found at i:69117751 original size:13 final size:13
Alignment explanation
Indices: 69117733--69117759 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
69117723 GAAGTAATCA
69117733 CACACGGGCGTGT
1 CACACGGGCGTGT
69117746 CACACGGGCGTGT
1 CACACGGGCGTGT
69117759 C
1 C
69117760 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:69125260 original size:43 final size:42
Alignment explanation
Indices: 69125089--69125248 Score: 182
Period size: 43 Copynumber: 3.8 Consensus size: 42
69125079 ATATATCGTA
* * *
69125089 CAATGCCAACGTCCCAGACGTGGTCTTACATGCTATCTCATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATAT
* * *
69125132 CAATGTC-ACTATCCCAGACAG-GGTCTTACACGAATCAAATA-
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAATCACATAT
* * *
69125173 CGATGCCGATGTCCCAGACGTGGTCTTACACGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACG-AATCACATAT
69125216 CAATGCCAACGTCCCAGACGTGGTCTTACACGA
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGA
69125249 CAACGCATAT
Statistics
Matches: 97, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
40 1 0.01
41 24 0.25
42 18 0.19
43 53 0.55
44 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGAATCACATAT
Found at i:69135907 original size:14 final size:14
Alignment explanation
Indices: 69135890--69135919 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
69135880 TTAAATCATG
*
69135890 AAAATTTCACACAT
1 AAAAATTCACACAT
69135904 AAAAATTCACACAT
1 AAAAATTCACACAT
69135918 AA
1 AA
69135920 TAAAGACAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAAATTCACACAT
Found at i:69141289 original size:48 final size:48
Alignment explanation
Indices: 69141207--69141526 Score: 180
Period size: 48 Copynumber: 6.8 Consensus size: 48
69141197 CCATGGTTAG
* * * * * *
69141207 TGAGATCCCATGTAAGACCATGTCCGAGTCATGGCATCGGCATCAGGA
1 TGAGATCCCGTATAAGACCATATCTGGGACATGGCATCGGCATCAGGA
* * * * *
69141255 TGTGATCCCGTATAAGACCATAT-TAGGGATATGGCTTCAGCATC-GTTA
1 TGAGATCCCGTATAAGACCATATCT-GGGACATGGCATCGGCATCAG-GA
* * ** * *
69141303 AGCGATTTCATA-ATAGACCATATCTGGGACATGACATC-G-AT-A--A
1 TGAGATCCCGTATA-AGACCATATCTGGGACATGGCATCGGCATCAGGA
* * *
69141346 -GAGATCCCGTATAAGA-CATGTCTGGGACATGGCATCGGTATCAGTA
1 TGAGATCCCGTATAAGACCATATCTGGGACATGGCATCGGCATCAGGA
* * ** * *
69141392 TGGGATCCCATGCAAGACCATATCTGGGATATGGCATTGGCATCGAGG-
1 TGAGATCCCGTATAAGACCATATCTGGGACATGGCATCGGCATC-AGGA
* * * * * **
69141440 TGAGGTCCCGTATAAGACCATGTTTGGGACATGGCATCAGTA-CTAATA
1 TGAGATCCCGTATAAGACCATATCTGGGACATGGCATCGGCATC-AGGA
* *
69141488 TGAGA-CTTCGTATAAGACCATATCTGGGATATGGCATCG
1 TGAGATC-CCGTATAAGACCATATCTGGGACATGGCATCG
69141527 ATATGTGGTC
Statistics
Matches: 202, Mismatches: 54, Indels: 32
0.70 0.19 0.11
Matches are distributed among these distances:
41 18 0.09
42 11 0.05
43 4 0.02
44 1 0.00
46 3 0.01
47 18 0.09
48 144 0.71
49 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (48 bp):
TGAGATCCCGTATAAGACCATATCTGGGACATGGCATCGGCATCAGGA
Found at i:69141558 original size:90 final size:89
Alignment explanation
Indices: 69141317--69141564 Score: 259
Period size: 96 Copynumber: 2.7 Consensus size: 89
69141307 ATTTCATAAT
* * * *
69141317 AGACCATATCTGGGACATGACATCGATAAGAGATCCCGTATAAGA-CATGTCTGGGACATGGCAT
1 AGACCATATCTGGGATATGGCATCGATATGAGGTCCCGTATAAGACCATGTCTGGGACATGGCAT
* * *
69141381 CGGTATCAGTATGGGATCCCATGCA
66 CAGTATCAATATGAGATCCCAT-CA
* *
69141406 AGACCATATCTGGGATATGGCATTGGCATCGAGGTGAGGTCCCGTATAAGACCATGTTTGGGACA
1 AGACCATATCTGGGATATGGCA-TCG-AT--A--TGAGGTCCCGTATAAGACCATGTCTGGGACA
**
69141471 TGGCATCAGTA-CTAATATGAGACTTCGTAT-A
60 TGGCATCAGTATC-AATATGAGA--TCCCATCA
* * *
69141502 AGACCATATCTGGGATATGGCATCGATATGTGGTCCCATGTAAGACCATGTCTGGGACATGGC
1 AGACCATATCTGGGATATGGCATCGATATGAGGTCCCGTATAAGACCATGTCTGGGACATGGC
69141565 TTTGGCACTC
Statistics
Matches: 133, Mismatches: 16, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
89 20 0.15
90 33 0.25
91 2 0.02
92 1 0.01
93 1 0.01
94 2 0.02
95 18 0.14
96 52 0.39
98 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (89 bp):
AGACCATATCTGGGATATGGCATCGATATGAGGTCCCGTATAAGACCATGTCTGGGACATGGCAT
CAGTATCAATATGAGATCCCATCA
Found at i:69144549 original size:670 final size:670
Alignment explanation
Indices: 69143269--69144610 Score: 2612
Period size: 670 Copynumber: 2.0 Consensus size: 670
69143259 ATAACCATAT
69143269 CACAAGACCATAATGTTATACTTCGAAATATACGAGCCATTTTCGCATGGCTATACGAATACACA
1 CACAAGACCATAATGTTATACTTCGAAATATACGAGCCATTTTCGCATGGCTATACGAATACACA
69143334 TTACAAAAGGGTACTTAATTAACAACAAGGGTCAACCCTATACATGCCGTTTTTCAAAATTGAAC
66 TTACAAAAGGGTACTTAATTAACAACAAGGGTCAACCCTATACATGCCGTTTTTCAAAATTGAAC
69143399 TAAAAGAGTACCAAAAAGTGGCTTAGATAGTGTGGACGACTTCGACTTTGACAATCCCGAGTCCG
131 TAAAAGAGTACCAAAAAGTGGCTTAGATAGTGTGGACGACTTCGACTTTGACAATCCCGAGTCCG
69143464 ATAGCTGAAGAGCAAAATCTATAAAACAGAGAATTAAAGCAGAGAATAAGCATTTCGATGCTTAG
196 ATAGCTGAAGAGCAAAATCTATAAAACAGAGAATTAAAGCAGAGAATAAGCATTTCGATGCTTAG
*
69143529 TAAGTTTTAAGCAATGAAATCATTTAAAGGAATGGCATAATAATATCAAGTTTATTTGTTCATCC
261 TAAGTTTTAAGCAATGAAATCATTTAAAGGAATGGCATAATAATATCAAATTTATTTGTTCATCC
69143594 CTTGGCCAAATAGAAACATAACCGAGATATCACTTTTATCATTAATATCACAAAGGTGAAACCAA
326 CTTGGCCAAATAGAAACATAACCGAGATATCACTTTTATCATTAATATCACAAAGGTGAAACCAA
*
69143659 TTTATCCGGCCAACTCCAATCCACAACCGAATGCTTTCATCTCAAATGTCCCTGTCCATTTCATG
391 TTTATCCGGCCAACTCCAATCCACAACCGAATGCTCTCATCTCAAATGTCCCTGTCCATTTCATG
69143724 CATATGCACACACATTCATAACTATGACATTGAACTCTCATATTCGGAACTCATACATCATAATC
456 CATATGCACACACATTCATAACTATGACATTGAACTCTCATATTCGGAACTCATACATCATAATC
*
69143789 AGATCATAAATGTTCGGATGATTTAAATAATGTGCTAAGCATTCCCATCGAATTTCAAAGTCATA
521 AGATCATAAACGTTCGGATGATTTAAATAATGTGCTAAGCATTCCCATCGAATTTCAAAGTCATA
69143854 ATTGAAGTATATTCACATTCTCAACAAGGGTAAATTACTTACCTGGTTGTCTTACAGTAAGTAGC
586 ATTGAAGTATATTCACATTCTCAACAAGGGTAAATTACTTACCTGGTTGTCTTACAGTAAGTAGC
69143919 GCATGTGATTAAAATTATTC
651 GCATGTGATTAAAATTATTC
69143939 CACAAGACCATAATGTTATACTTCGAAATATACGAGCCATTTTCGCATGGCTATACGAATACACA
1 CACAAGACCATAATGTTATACTTCGAAATATACGAGCCATTTTCGCATGGCTATACGAATACACA
69144004 TTACAAAAGGGTACTTAATTAACAACAAGGGTCAACCCTATACATGCCGTTTTTCAAAATTGAAC
66 TTACAAAAGGGTACTTAATTAACAACAAGGGTCAACCCTATACATGCCGTTTTTCAAAATTGAAC
69144069 TAAAAGAGTACCAAAAAGTGGCTTAGATAGTGTGGACGACTTCGACTTTGACAATCCCGAGTCCG
131 TAAAAGAGTACCAAAAAGTGGCTTAGATAGTGTGGACGACTTCGACTTTGACAATCCCGAGTCCG
*
69144134 ATAGCTGAAGAGCAAAATCTATAAAATAGAGAATTAAAGCAGAGAATAAGCATTTCGATGCTTAG
196 ATAGCTGAAGAGCAAAATCTATAAAACAGAGAATTAAAGCAGAGAATAAGCATTTCGATGCTTAG
69144199 TAAGTTTTAAGCAATGAAATCATTTAAAGGAATGGCATAATAATATCAAATTTATTTGTTCATCC
261 TAAGTTTTAAGCAATGAAATCATTTAAAGGAATGGCATAATAATATCAAATTTATTTGTTCATCC
*
69144264 CTTGGCCGAATAGAAACATAACCGAGATATCACTTTTATCATTAATATCACAAAGGTGAAACCAA
326 CTTGGCCAAATAGAAACATAACCGAGATATCACTTTTATCATTAATATCACAAAGGTGAAACCAA
*
69144329 TTTATCTGGCCAACTCCAATCCACAACCGAATGCTCTCATCTCAAATGTCCCTGTCCATTTCATG
391 TTTATCCGGCCAACTCCAATCCACAACCGAATGCTCTCATCTCAAATGTCCCTGTCCATTTCATG
*
69144394 CATATGCACACATATTCATAACTATGACATTGAACTCTCATATTCGGAACTCATACATCATAATC
456 CATATGCACACACATTCATAACTATGACATTGAACTCTCATATTCGGAACTCATACATCATAATC
*
69144459 AGGTCATAAACGTTCGGATGATTTAAATAATGTGCTAAGCATTCCCATCGAATTTCAAAGTCATA
521 AGATCATAAACGTTCGGATGATTTAAATAATGTGCTAAGCATTCCCATCGAATTTCAAAGTCATA
69144524 ATTGAAGTATATTCACATTCTCAACAAGGGTAAATTACTTACCTGGTTGTCTTACAGTAAGTAGC
586 ATTGAAGTATATTCACATTCTCAACAAGGGTAAATTACTTACCTGGTTGTCTTACAGTAAGTAGC
69144589 GCATGTGATTAAAATTATTC
651 GCATGTGATTAAAATTATTC
69144609 CA
1 CA
69144611 GCATGTATTA
Statistics
Matches: 664, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
670 664 1.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.29
Consensus pattern (670 bp):
CACAAGACCATAATGTTATACTTCGAAATATACGAGCCATTTTCGCATGGCTATACGAATACACA
TTACAAAAGGGTACTTAATTAACAACAAGGGTCAACCCTATACATGCCGTTTTTCAAAATTGAAC
TAAAAGAGTACCAAAAAGTGGCTTAGATAGTGTGGACGACTTCGACTTTGACAATCCCGAGTCCG
ATAGCTGAAGAGCAAAATCTATAAAACAGAGAATTAAAGCAGAGAATAAGCATTTCGATGCTTAG
TAAGTTTTAAGCAATGAAATCATTTAAAGGAATGGCATAATAATATCAAATTTATTTGTTCATCC
CTTGGCCAAATAGAAACATAACCGAGATATCACTTTTATCATTAATATCACAAAGGTGAAACCAA
TTTATCCGGCCAACTCCAATCCACAACCGAATGCTCTCATCTCAAATGTCCCTGTCCATTTCATG
CATATGCACACACATTCATAACTATGACATTGAACTCTCATATTCGGAACTCATACATCATAATC
AGATCATAAACGTTCGGATGATTTAAATAATGTGCTAAGCATTCCCATCGAATTTCAAAGTCATA
ATTGAAGTATATTCACATTCTCAACAAGGGTAAATTACTTACCTGGTTGTCTTACAGTAAGTAGC
GCATGTGATTAAAATTATTC
Found at i:69144757 original size:41 final size:41
Alignment explanation
Indices: 69144704--69144872 Score: 154
Period size: 41 Copynumber: 4.1 Consensus size: 41
69144694 AGTCCGACTC
* *
69144704 TTAG-CACCGGCTC-AAGAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAAGCCCTTCGAGACCAAGCTCGGA
* * * *
69144743 TTAGACTACTGGCTC-GAAGGCCCTTCG-GAACTAAG-TCCGA
1 TTAGAC-ACTGGCTCAAAAAGCCCTTCGAG-ACCAAGCTCGGA
* * *
69144783 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC-AAAAAGCCCTTCGAGACCAAGCTCGG--A
69144828 TTAG-CACTGGCTC-AAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAAGCCCTTCGAGACCAAGCTCGGA
69144867 TTAGAC
1 TTAGAC
69144873 CCCGATTAGC
Statistics
Matches: 106, Mismatches: 13, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
39 9 0.08
40 18 0.17
41 46 0.43
42 16 0.15
43 12 0.11
44 1 0.01
45 4 0.04
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (41 bp):
TTAGACACTGGCTCAAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:69153385 original size:46 final size:48
Alignment explanation
Indices: 69153318--69153447 Score: 176
Period size: 47 Copynumber: 2.8 Consensus size: 48
69153308 CTCAATCGAT
* *
69153318 AAGTACCTATACCATGGCCCGTAGCCAAATGAA-GTAACTTATC-CCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
* * *
69153364 AAGTACCTATACCATCGCCCGTAGCCAAATCAAGGTAACTCCTCTCTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
* *
69153412 AA-TACCTATACCATGGCCCATAGCTAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
69153448 TTATTCGCAC
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
46 31 0.42
47 39 0.53
48 4 0.05
ACGTcount: A:0.35, C:0.29, G:0.14, T:0.22
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTCCA
Found at i:69156149 original size:42 final size:42
Alignment explanation
Indices: 69156047--69156150 Score: 101
Period size: 42 Copynumber: 2.5 Consensus size: 42
69156037 ACAATGCCAA
* * *
69156047 TGTCCTAGATGTGGT-TTACATGTAATAAATATCGATGCCAC
1 TGTCCCAGACGTGGTCTTACATGTAATAAATATCGATGCAAC
*
69156088 TGTCCCAGACAG-GGCCTTACATG-AATTCAAATA-CGATGCTAAC
1 TGTCCCAGAC-GTGGTCTTACATGTAA-T-AAATATCGATGC-AAC
69156131 -GTCCCAGACGTGGTCTTACA
1 TGTCCCAGACGTGGTCTTACA
69156151 CGTGAAAGAT
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
41 13 0.25
42 32 0.62
43 7 0.13
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (42 bp):
TGTCCCAGACGTGGTCTTACATGTAATAAATATCGATGCAAC
Found at i:69158096 original size:40 final size:40
Alignment explanation
Indices: 69158052--69158232 Score: 274
Period size: 40 Copynumber: 4.5 Consensus size: 40
69158042 GCCACTAGCT
* * * *
69158052 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
69158092 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
69158131 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
69158171 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
69158211 CGAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
69158233 TGAAATTAGC
Statistics
Matches: 132, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 37 0.28
40 95 0.72
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:69158152 original size:79 final size:80
Alignment explanation
Indices: 69158052--69158232 Score: 274
Period size: 79 Copynumber: 2.3 Consensus size: 80
69158042 GCCACTAGCT
* * * * *
69158052 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
69158117 -TATAATAACTCGCA
66 ATATAATAACTCGCA
*
69158131 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
69158196 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
69158211 CGAATGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
69158233 TGAAATTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 59 0.64
80 33 0.36
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:69158257 original size:40 final size:38
Alignment explanation
Indices: 69158052--69158274 Score: 189
Period size: 40 Copynumber: 5.6 Consensus size: 38
69158042 GCCACTAGCT
* ** *
69158052 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAG-AACTCGCA
* * *
69158092 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GAATTAGAACTCGCA
*
69158131 CAAATGCCTTCGGGACTTAGCCCGGATATA-ATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAGA-A-CTCGCA
* * *
69158171 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGAAT-TAG-AACTCGCA
* * * * *
69158211 CGAATGCCTTCGGGACTTAGCCTGAAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCG-AATTAG-AACTCGCA
69158251 CAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCT-TCGGGACTTAGCCCG
69158275 GTTATCATCC
Statistics
Matches: 154, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
38 4 0.03
39 34 0.22
40 111 0.72
41 4 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAGCCCGAATTAGAACTCGCA
Found at i:69166169 original size:40 final size:40
Alignment explanation
Indices: 69166102--69166348 Score: 277
Period size: 40 Copynumber: 6.2 Consensus size: 40
69166092 CCTTCGGAGT
** * *
69166102 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
69166141 TTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
69166181 TTAGCCC-GATATAATAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * * * *
69166220 TTAGCCCAGATATAATAGCTCGAACAAATGCCTTCGGAAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
69166260 CTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
** * *
69166300 TTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGAC
69166340 TTAGCCCGG
1 TTAGCCCGG
69166349 TTATCATCCG
Statistics
Matches: 180, Mismatches: 24, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
39 43 0.24
40 137 0.76
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:69172988 original size:17 final size:18
Alignment explanation
Indices: 69172961--69172994 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
69172951 CTCATACAAA
69172961 ATTTTTCAAAAATTAAAC
1 ATTTTTCAAAAATTAAAC
*
69172979 ATTTTT-AAAAGTTAAA
1 ATTTTTCAAAAATTAAA
69172995 GAGGTTACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (18 bp):
ATTTTTCAAAAATTAAAC
Found at i:69174338 original size:42 final size:42
Alignment explanation
Indices: 69174225--69174343 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 42
69174215 CGGATAGCTC
* *
69174225 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAATCAA
*** * * *
69174267 ATATCAATGCCATTATTCCAGATAGGGTCTTACACG-AACTCAA
1 ATA-CAATGCCAACGTCCCAGACATGGTCTTACACGTAA-TCAA
* *
69174310 ATACGATGCCAACGTCCCAAACATGGTCTTACAC
1 ATACAATGCCAACGTCCCAGACATGGTCTTACAC
69174344 ATAAAACATA
Statistics
Matches: 59, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
42 28 0.47
43 31 0.53
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (42 bp):
ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAATCAA
Found at i:69180485 original size:15 final size:15
Alignment explanation
Indices: 69180453--69180481 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
69180443 ATTTTATGTG
69180453 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
69180468 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
69180482 ATTTTTCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:69181936 original size:40 final size:40
Alignment explanation
Indices: 69181881--69181960 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
69181871 AAGCTAAAAT
69181881 GATCAGGAATGAATTAGTTTATTTCCTACTTGAAATAAGG
1 GATCAGGAATGAATTAGTTTATTTCCTACTTGAAATAAGG
*
69181921 GATCAGGTATGAATTAGTTTATTTCCTACTTGAAATAAGG
1 GATCAGGAATGAATTAGTTTATTTCCTACTTGAAATAAGG
69181961 TAAGTAAGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (40 bp):
GATCAGGAATGAATTAGTTTATTTCCTACTTGAAATAAGG
Found at i:69196351 original size:48 final size:48
Alignment explanation
Indices: 69196135--69196363 Score: 150
Period size: 48 Copynumber: 4.9 Consensus size: 48
69196125 AGGTAGGGTC
* * *
69196135 CCAATGCCATATCCCAGATATGGTCTTACATGGGACCACATAACGAT-
1 CCAATGCCATGTCCCAGATATGGTCTTACATAGGATCACATAACGATA
* * * *
69196182 GCAATTCCATGTCCCAGACATGGTCTTACATGGGATCAC---AC-ATA
1 CCAATGCCATGTCCCAGATATGGTCTTACATAGGATCACATAACGATA
* * * * * * * *
69196226 TCGAA-GCCGATAG-CCCAGCTATGGTCTTACACGATG-TCTCATTATGATG
1 -CCAATGCC-AT-GTCCCAGATATGGTCTTACA-TAGGATCACATAACGATA
*** * * *
69196275 CCAATGCCATGTCTTGGACATGGCCTTACATAAGATCACATAACGATA
1 CCAATGCCATGTCCCAGATATGGTCTTACATAGGATCACATAACGATA
* * *
69196323 CCAAAGCCATGTCCCAGATATGGTCTTACATGGGATAACAT
1 CCAATGCCATGTCCCAGATATGGTCTTACATAGGATCACAT
69196364 GTCACTGCCG
Statistics
Matches: 132, Mismatches: 38, Indels: 23
0.68 0.20 0.12
Matches are distributed among these distances:
43 2 0.02
44 4 0.03
45 23 0.17
46 2 0.02
47 37 0.28
48 59 0.45
49 5 0.04
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (48 bp):
CCAATGCCATGTCCCAGATATGGTCTTACATAGGATCACATAACGATA
Found at i:69202794 original size:107 final size:106
Alignment explanation
Indices: 69202603--69202796 Score: 239
Period size: 107 Copynumber: 1.8 Consensus size: 106
69202593 AATGTAAAAC
* * * * *
69202603 CATAGCTGGGCTATGGCATTTTAGTGAAAGACCATAACTAGGTTATGGCACCATGTACGTAAGAC
1 CATAGCTGGGCTATGGCATCTGAGAGAAAGACCATAACTAGGTAATGGCACCACGTACGTAAGAC
**
69202668 CATGGTTGGACCATAGCAATATATATAAAACTGTGTAAGAG
66 CATGGCAGGACCATAGCAATATATATAAAACTGTGTAAGAG
* * *
69202709 CATAGCTGGGCTATGGCATCCTGA-AGATAAGACCATAACTGGGTAATGGCACTACG-AGTGTAA
1 CATAGCTGGGCTATGGCAT-CTGAGAGA-AAGACCATAACTAGGTAATGGCACCACGTA-CGTAA
* *
69202772 GACCATGGCAGGGCCATGGCAATAT
63 GACCATGGCAGGACCATAGCAATAT
69202797 TTGTGTGAGA
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
106 22 0.30
107 51 0.70
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (106 bp):
CATAGCTGGGCTATGGCATCTGAGAGAAAGACCATAACTAGGTAATGGCACCACGTACGTAAGAC
CATGGCAGGACCATAGCAATATATATAAAACTGTGTAAGAG
Found at i:69212827 original size:22 final size:22
Alignment explanation
Indices: 69212799--69212841 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
69212789 AACTAAGTCA
* * *
69212799 ACAGAACGGCTCAATGCCGTAG
1 ACAGAACAGCTAAAGGCCGTAG
69212821 ACAGAACAGCTAAAGGCCGTA
1 ACAGAACAGCTAAAGGCCGTA
69212842 AATATCACAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.37, C:0.26, G:0.26, T:0.12
Consensus pattern (22 bp):
ACAGAACAGCTAAAGGCCGTAG
Found at i:69219033 original size:43 final size:42
Alignment explanation
Indices: 69218964--69219120 Score: 131
Period size: 43 Copynumber: 3.7 Consensus size: 42
69218954 AGCTCGTACA
* * * *
69218964 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATTG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAATA-CG
*
69219007 ATG-CAAGTGTCCCAGACAGGGTCTTACACGAAATCATATACG
1 ATGCCAA-TGTCCCAGACAGGGTCTTACACGAAATCAAATACG
* * * *
69219049 ATGCCAATGTCCTAGACATGGTCTTGCACATAAATCACAA-ATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACAC-GAAATCA-AATA-CG
** *
69219093 ATGCCAACATCCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACAGGGTCTTACA
69219121 TGATAACACA
Statistics
Matches: 94, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 26 0.28
43 40 0.43
44 28 0.30
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATACG
Found at i:69223122 original size:23 final size:22
Alignment explanation
Indices: 69223096--69223179 Score: 80
Period size: 23 Copynumber: 3.6 Consensus size: 22
69223086 AAGGGATATA
69223096 TATATATGGTTGTGTTTGGATGG
1 TATATATGGTTGTGTTTGGA-GG
*
69223119 TATACT-TGGTTGTGTTCGGAGG
1 TATA-TATGGTTGTGTTTGGAGG
*
69223141 TTATATATAAGGTTATGTTTGGAGGG
1 -TATATAT--GGTTGTGTTTGGA-GG
*
69223167 TATATTTGGTTGT
1 TATATATGGTTGT
69223180 ATTCAAGGGT
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
22 3 0.06
23 27 0.54
24 1 0.02
25 17 0.34
26 2 0.04
ACGTcount: A:0.19, C:0.02, G:0.32, T:0.46
Consensus pattern (22 bp):
TATATATGGTTGTGTTTGGAGG
Found at i:69226459 original size:18 final size:17
Alignment explanation
Indices: 69226426--69226464 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
69226416 TTGTATAAAT
69226426 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
69226444 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
69226461 TGTG
1 TGTG
69226465 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:69226717 original size:23 final size:23
Alignment explanation
Indices: 69226690--69226765 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
69226680 AGTGTTATTG
69226690 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
69226713 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
69226736 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
69226759 ATCAGTG
1 ATCAGTG
69226766 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:69233789 original size:18 final size:17
Alignment explanation
Indices: 69233756--69233794 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
69233746 TTGTATAAAT
69233756 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
69233774 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
69233791 TGTG
1 TGTG
69233795 GAAGGAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:69234046 original size:23 final size:23
Alignment explanation
Indices: 69234019--69234094 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
69234009 AGTGTTATTG
69234019 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
69234042 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
69234065 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
69234088 ATCAGTG
1 ATCAGTG
69234095 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:69240850 original size:7 final size:7
Alignment explanation
Indices: 69240838--69240868 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
69240828 CATAACTTTC
69240838 ATTTTTA
1 ATTTTTA
69240845 ATTTTTA
1 ATTTTTA
69240852 ATTTTTA
1 ATTTTTA
69240859 ATTTTTA
1 ATTTTTA
69240866 ATT
1 ATT
69240869 AAATTGTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
ATTTTTA
Found at i:69243428 original size:22 final size:21
Alignment explanation
Indices: 69243403--69243455 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 21
69243393 GAAATTGGTT
69243403 ATATATATTGCACTTAT-ATATA
1 ATATATATTG--CTTATAATATA
69243425 ATATAT-TGTGCTTATAGATATA
1 ATATATAT-TGCTTATA-ATATA
69243447 ATATATATT
1 ATATATATT
69243456 ATTAGATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
20 5 0.19
21 1 0.04
22 20 0.74
23 1 0.04
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.47
Consensus pattern (21 bp):
ATATATATTGCTTATAATATA
Found at i:69243430 original size:20 final size:21
Alignment explanation
Indices: 69243405--69243452 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
69243395 AATTGGTTAT
69243405 ATATATTGCACTTAT-ATATA
1 ATATATTGCACTTATAATATA
**
69243425 ATATATTGTGCTTATAGATATA
1 ATATATTGCACTTATA-ATATA
69243447 ATATAT
1 ATATAT
69243453 ATTATTAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 13 0.54
22 11 0.46
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (21 bp):
ATATATTGCACTTATAATATA
Found at i:69245340 original size:17 final size:17
Alignment explanation
Indices: 69245315--69245347 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
69245305 GGATAGAAAT
*
69245315 AAATTAATAATGAAAAG
1 AAATAAATAATGAAAAG
69245332 AAATAAATAATGAAAA
1 AAATAAATAATGAAAA
69245348 AACAAACGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (17 bp):
AAATAAATAATGAAAAG
Found at i:69247078 original size:48 final size:48
Alignment explanation
Indices: 69247003--69247182 Score: 140
Period size: 48 Copynumber: 3.8 Consensus size: 48
69246993 CACATAATAG
* * * *
69247003 GATGCCAATGATATATCCTAGATATGGTCTTACATGGGATCAAATATC
1 GATGCCAATGACATGTCCCAGACATGGTCTTACATGGGATCAAATATC
*
69247051 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATACATATC
1 GATGCCAATGACATGTCCCAGACATGGTCTTACATGGGATCA-A-ATATC
* * * ** *
69247101 GAAGCC---GACA-G-CCCAG-CTATGGTCTTACACGATG-TCTCATATT
1 GATGCCAATGACATGTCCCAGAC-ATGGTCTTACATG-GGATCAAATATC
* * * *
69247144 GATGCCAATGCCATGTCCTAGACATGGACATACATGGGA
1 GATGCCAATGACATGTCCCAGACATGGTCTTACATGGGA
69247183 CCACACATAT
Statistics
Matches: 102, Mismatches: 19, Indels: 22
0.71 0.13 0.15
Matches are distributed among these distances:
43 9 0.09
44 1 0.01
45 19 0.19
46 5 0.05
47 5 0.05
48 51 0.50
49 2 0.02
50 10 0.10
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.26
Consensus pattern (48 bp):
GATGCCAATGACATGTCCCAGACATGGTCTTACATGGGATCAAATATC
Found at i:69251508 original size:374 final size:373
Alignment explanation
Indices: 69250787--69251535 Score: 1453
Period size: 374 Copynumber: 2.0 Consensus size: 373
69250777 AAGAGAAATA
69250787 GATAAATTTAAAAGTTCAGTTGAATTAATATTTTGAGATGAAAAATCTATGTGAGGCTAAGAAAA
1 GATAAATTTAAAAGTTCAGTTGAATTAATATTTTGAGATGAAAAATCTATGTGAGGCTAAGAAAA
69250852 TACTCAGCATGGAGATACATAAAGACAAAAAGAAAGGCACGCTTTGTTTGGCTTGAAAGCAATAT
66 TACTCAGCATGGAGATACATAAAGACAAAAAGAAAGGCACGCTTTGTTTGGCTTGAAAGCAATAT
69250917 ATGAGAAAAATAATACAATGCTTTGGTCTGAACGAAAATAAAAAAAACATGTAAGTACCCCATTT
131 ATGAGAAAAATAATACAATGCTTTGGTCTGAACGAAAATAAAAAAAACATGTAAGTACCCCATTT
* *
69250982 TATTTTTAGTTGAAACTTTGTTCTCAATTGTCTTCCAAAAGTGATGAAAAATGAGAATATATGGC
196 TATTTTTAGTCGAAACTTTGTTCTCAATTGTCTTCCAAAAGTGATGAAAAATAAGAATATATGGC
*
69251047 AAAGGTTTCATATGCTAATGTAGTTGGGAGTTTGATGTACGTGATGGTGCATACACAACTAGACA
261 AAAGGTTTCATATGCTAATGTAGTTAGGAGTTTGATGTACGTGATGGTGCATACACAACTAGACA
69251112 TTTCATAAGCAAGTAGAGTTATGAGGTGTATGCATAATCCTAGTAAAG
326 TTTCATAAGCAAGTAGAGTTATGAGGTGTATGCATAATCCTAGTAAAG
*
69251160 GATAAATTTAAAAGTTTAGTTGAATTAATATTTTGAGATGAAAAATCTATGTGAGGCTAAGAAAA
1 GATAAATTTAAAAGTTCAGTTGAATTAATATTTTGAGATGAAAAATCTATGTGAGGCTAAGAAAA
69251225 TACTCAGCATGGAGATACATAAAGACAAAAAGAAAGGCACGCTTTGTTTGGCTTGAAAGCAATAT
66 TACTCAGCATGGAGATACATAAAGACAAAAAGAAAGGCACGCTTTGTTTGGCTTGAAAGCAATAT
69251290 ATGAGAAAAATAATACAATGCTTTGGTCTGAACGAAAATAAAAAAAAACATGTAAGTACCCCATT
131 ATGAGAAAAATAATACAATGCTTTGGTCTGAACGAAAAT-AAAAAAAACATGTAAGTACCCCATT
69251355 TTATTTTTAGTCGAAACTTTGTTCTCAATTGTCTTCCAAAAGTGATGAAAAATAAGAATATATGG
195 TTATTTTTAGTCGAAACTTTGTTCTCAATTGTCTTCCAAAAGTGATGAAAAATAAGAATATATGG
69251420 CAAAGGTTTCATATGCTAATGTAGTTAGGAGTTTGATGTACGTGATGGTGCATACACAACTAGAC
260 CAAAGGTTTCATATGCTAATGTAGTTAGGAGTTTGATGTACGTGATGGTGCATACACAACTAGAC
69251485 ATTTCATAAGCAAGTAGAGTTATGAGGTGTATGCATAATCCTAGTAAAG
325 ATTTCATAAGCAAGTAGAGTTATGAGGTGTATGCATAATCCTAGTAAAG
69251534 GA
1 GA
69251536 CATTGGCAAG
Statistics
Matches: 371, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
373 168 0.45
374 203 0.55
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (373 bp):
GATAAATTTAAAAGTTCAGTTGAATTAATATTTTGAGATGAAAAATCTATGTGAGGCTAAGAAAA
TACTCAGCATGGAGATACATAAAGACAAAAAGAAAGGCACGCTTTGTTTGGCTTGAAAGCAATAT
ATGAGAAAAATAATACAATGCTTTGGTCTGAACGAAAATAAAAAAAACATGTAAGTACCCCATTT
TATTTTTAGTCGAAACTTTGTTCTCAATTGTCTTCCAAAAGTGATGAAAAATAAGAATATATGGC
AAAGGTTTCATATGCTAATGTAGTTAGGAGTTTGATGTACGTGATGGTGCATACACAACTAGACA
TTTCATAAGCAAGTAGAGTTATGAGGTGTATGCATAATCCTAGTAAAG
Found at i:69254403 original size:8 final size:8
Alignment explanation
Indices: 69254390--69254414 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
69254380 TGAAGAACTA
69254390 TTTATTAT
1 TTTATTAT
69254398 TTTATTAT
1 TTTATTAT
69254406 TTTATTAT
1 TTTATTAT
69254414 T
1 T
69254415 ACTCCAGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTATTAT
Found at i:69264276 original size:20 final size:19
Alignment explanation
Indices: 69264248--69264323 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 19
69264238 CTTACAGAAC
*
69264248 ATACTAAAATTTCTAAAGG
1 ATACCAAAATTTCTAAAGG
* *
69264267 TATACCAAAATATCTGAAAAG
1 -ATACCAAAATTTCT-AAAGG
*
69264288 ATATCAAAATTTCTAAAGGG
1 ATACCAAAATTTCTAAA-GG
*
69264308 GTACCAAAATTTCTAA
1 ATACCAAAATTTCTAA
69264324 CATATACCTA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 3 0.07
20 39 0.85
21 4 0.09
ACGTcount: A:0.47, C:0.13, G:0.11, T:0.29
Consensus pattern (19 bp):
ATACCAAAATTTCTAAAGG
Found at i:69265577 original size:28 final size:27
Alignment explanation
Indices: 69265537--69265614 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 27
69265527 TGTATATAGT
* *
69265537 CCATTAGGCCCAATCACGTTTATGA-GG
1 CCATTAGGCCCAATCACATTTA-AACGG
*
69265564 CCCATTAGGCCCAAATCACATTCAAACGG
1 -CCATTAGGCCC-AATCACATTTAAACGG
69265593 CCATTAGGCCCAATCACATTTA
1 CCATTAGGCCCAATCACATTTA
69265615 CAGTTATGCT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
27 10 0.23
28 23 0.52
29 11 0.25
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (27 bp):
CCATTAGGCCCAATCACATTTAAACGG
Found at i:69265855 original size:16 final size:16
Alignment explanation
Indices: 69265832--69265873 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
69265822 CCAAACTTTT
69265832 GACTTTTCGGCATTTC
1 GACTTTTCGGCATTTC
* **
69265848 GGCTTTTCGATATTTC
1 GACTTTTCGGCATTTC
69265864 GACTTTTCGG
1 GACTTTTCGG
69265874 GATCTGCCGA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.12, C:0.21, G:0.21, T:0.45
Consensus pattern (16 bp):
GACTTTTCGGCATTTC
Found at i:69276095 original size:17 final size:18
Alignment explanation
Indices: 69276069--69276115 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
69276059 GATTTAGGTT
* *
69276069 GTGTGGGCCACATGGA-A
1 GTGTGAGCCACACGGACA
69276086 GTGTGAGCCACACGGACA
1 GTGTGAGCCACACGGACA
*
69276104 -TGTGAGCGACAC
1 GTGTGAGCCACAC
69276116 AAGCGTGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 25 0.96
18 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.36, T:0.15
Consensus pattern (18 bp):
GTGTGAGCCACACGGACA
Found at i:69276787 original size:34 final size:34
Alignment explanation
Indices: 69276724--69276788 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
69276714 TATCTAAAAT
* * *
69276724 TGAAATTGAAATGGGCTAAATCCCGAACTGCTAC
1 TGAAACTGAAATGGGCTAAAGCCCAAACTGCTAC
* *
69276758 TGAAACTGAAATGGGCTTAGGCCCAAACTGC
1 TGAAACTGAAATGGGCTAAAGCCCAAACTGC
69276789 ATTTGACTGT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (34 bp):
TGAAACTGAAATGGGCTAAAGCCCAAACTGCTAC
Found at i:69277608 original size:17 final size:17
Alignment explanation
Indices: 69277574--69277612 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
69277564 AGTAGAGTAT
* *
69277574 ACTGAAACTGTAGTAAA
1 ACTGAAACTATAGCAAA
*
69277591 ACTGAGACTATAGCAAA
1 ACTGAAACTATAGCAAA
69277608 ACTGA
1 ACTGA
69277613 TAGAGACTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (17 bp):
ACTGAAACTATAGCAAA
Found at i:69291096 original size:13 final size:13
Alignment explanation
Indices: 69291080--69291104 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69291070 AGGCCGTGTG
69291080 AGGGACACGGGCC
1 AGGGACACGGGCC
69291093 AGGGACACGGGC
1 AGGGACACGGGC
69291105 GTGTGCTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:69295385 original size:26 final size:26
Alignment explanation
Indices: 69295314--69295420 Score: 124
Period size: 27 Copynumber: 4.0 Consensus size: 26
69295304 AGCATGGCTG
* *
69295314 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
69295340 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* * *
69295367 GCAGAACAGATATTATGGCATAGCCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
69295393 CCAGAAATAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
69295421 ATAGAACGCT
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 27 0.39
27 30 0.43
28 13 0.19
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:69295395 original size:53 final size:54
Alignment explanation
Indices: 69295315--69295420 Score: 142
Period size: 53 Copynumber: 2.0 Consensus size: 54
69295305 GCATGGCTGC
* * *
69295315 CAGAACAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGGCAGAGCCAG
1 CAGAACAGATATTATGACAGAGCCACCAGAAACAGATATTTGTGGCAGAGCCAG
* * * *
69295368 CAGAACAGATATTATGGCATAGCCACCAGAAATAGATATTTGTGGCATAGCCA
1 CAGAACAGATATTATGACAGAGCCACCAGAAACAGATATTTGTGGCAGAGCCA
69295421 ATAGAACGCT
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 32 0.71
54 13 0.29
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.21
Consensus pattern (54 bp):
CAGAACAGATATTATGACAGAGCCACCAGAAACAGATATTTGTGGCAGAGCCAG
Found at i:69298818 original size:15 final size:15
Alignment explanation
Indices: 69298798--69298827 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
69298788 CAAACTATGT
*
69298798 CTCTAATTTAGGAAA
1 CTCTAAGTTAGGAAA
69298813 CTCTAAGTTAGGAAA
1 CTCTAAGTTAGGAAA
69298828 GATACTAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (15 bp):
CTCTAAGTTAGGAAA
Found at i:69301217 original size:26 final size:26
Alignment explanation
Indices: 69301188--69301238 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
69301178 AATGGAGGAG
69301188 ATAGGCTTAAAATGGGGAAAGTGCTT
1 ATAGGCTTAAAATGGGGAAAGTGCTT
69301214 ATAGGCTTAAAATGGGGAAAGTGCT
1 ATAGGCTTAAAATGGGGAAAGTGCT
69301239 GCAAAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.25
Consensus pattern (26 bp):
ATAGGCTTAAAATGGGGAAAGTGCTT
Found at i:69304245 original size:18 final size:18
Alignment explanation
Indices: 69304217--69304262 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
69304207 AGTTGAGAGA
69304217 TGAGAGAATGATGAATAAG
1 TGAG-GAATGATGAATAAG
*
69304236 TGAGGAATGATGGATAAG
1 TGAGGAATGATGAATAAG
*
69304254 TGAGAAATG
1 TGAGGAATG
69304263 GGATCTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.43, C:0.00, G:0.35, T:0.22
Consensus pattern (18 bp):
TGAGGAATGATGAATAAG
Found at i:69316073 original size:46 final size:46
Alignment explanation
Indices: 69316006--69316180 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 46
69315996 TGTAACCCGC
* *
69316006 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* * *
69316052 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C-ATTTGCAT
* * ** *
69316102 -C-TCA-CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
* *
69316145 CCATAAGTGAACTCGGACTCGACTCAACGAGCTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
69316181 ATGCCCAAAT
Statistics
Matches: 104, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 59 0.57
47 26 0.25
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCAT
Found at i:69316121 original size:93 final size:93
Alignment explanation
Indices: 69316013--69316185 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
69316003 CGCCCATAAG
* * ** * *
69316013 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69316078 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
69316106 CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCGACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69316171 ACGAGCTCGGATGCC
66 ACGAGCTCGGATGCC
69316186 CAAATATCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:69318615 original size:19 final size:19
Alignment explanation
Indices: 69318521--69318653 Score: 81
Period size: 19 Copynumber: 7.0 Consensus size: 19
69318511 TCTATCATCT
* *
69318521 TCCATTAAAAATTTAGGTA
1 TCCATTAGAAATTTTGGTA
* *
69318540 TCCCTTACAAATTTTGGT-
1 TCCATTAGAAATTTTGGTA
* *
69318558 TCTCGTTAG-AAGTTTGGTA
1 TC-CATTAGAAATTTTGGTA
* * * *
69318577 TCTATTTGAAATTCTCGTA
1 TCCATTAGAAATTTTGGTA
69318596 TCCATTAGAAATTTTGGTA
1 TCCATTAGAAATTTTGGTA
*** ** *
69318615 TTTTGTTACCAATTTTTGTA
1 -TCCATTAGAAATTTTGGTA
*
69318635 TCCATTAGAAATTTCGGTA
1 TCCATTAGAAATTTTGGTA
69318654 CACTCTATTG
Statistics
Matches: 81, Mismatches: 29, Indels: 8
0.69 0.25 0.07
Matches are distributed among these distances:
18 13 0.16
19 55 0.68
20 13 0.16
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (19 bp):
TCCATTAGAAATTTTGGTA
Found at i:69319012 original size:72 final size:71
Alignment explanation
Indices: 69318877--69319012 Score: 168
Period size: 72 Copynumber: 1.9 Consensus size: 71
69318867 TATATAATTT
** * *
69318877 TTTAGAACAATTTTTGTTCAAATACTTTTGGTTTTTGTTCAAGACTTCATATTTTTCTTTTCTCA
1 TTTAGAACAATTTTTGTTCAAATACTTTTGGTTTTCCTTAAAGACTTCATATTTTTCTCTTCTCA
69318942 TCGAAA
66 TCGAAA
* * *
69318948 TTTAGGAATAATTGTTT-TTCAAGTACTTTTGGTTTTCCTTAAATG-CTTCATCTTTTTCTCTTC
1 TTTA-GAACAATT-TTTGTTCAAATACTTTTGGTTTTCCTTAAA-GACTTCATATTTTTCTCTTC
69319011 TC
63 TC
69319013 TTTTAAAGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
71 4 0.07
72 47 0.85
73 4 0.07
ACGTcount: A:0.22, C:0.15, G:0.10, T:0.52
Consensus pattern (71 bp):
TTTAGAACAATTTTTGTTCAAATACTTTTGGTTTTCCTTAAAGACTTCATATTTTTCTCTTCTCA
TCGAAA
Found at i:69319399 original size:20 final size:20
Alignment explanation
Indices: 69319376--69319420 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
69319366 TGCATTATAG
*
69319376 ATTTTAGTA-TTAGTTAAAA
1 ATTTTAGTATTTAATTAAAA
*
69319395 AATTTAGTATTTAATTAAAA
1 ATTTTAGTATTTAATTAAAA
69319415 ATTTTA
1 ATTTTA
69319421 AAAATTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (20 bp):
ATTTTAGTATTTAATTAAAA
Found at i:69319520 original size:4 final size:4
Alignment explanation
Indices: 69319513--69319547 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
69319503 CATTCATTTC
69319513 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
69319548 GAACTAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:69322446 original size:21 final size:21
Alignment explanation
Indices: 69322422--69322473 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
69322412 TTGAATCTTG
*
69322422 AACCCTAAACATTGAAACCA-A
1 AACCCTAAAC-TCGAAACCATA
* * *
69322443 AACCCCAAGCTCGAAACCATG
1 AACCCTAAACTCGAAACCATA
69322464 AACCCTAAAC
1 AACCCTAAAC
69322474 CCAAAATTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.46, C:0.35, G:0.08, T:0.12
Consensus pattern (21 bp):
AACCCTAAACTCGAAACCATA
Found at i:69322574 original size:20 final size:20
Alignment explanation
Indices: 69322549--69322588 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
69322539 TTTTGATTTA
* *
69322549 AGATTCAGGGTTTAATGTTT
1 AGATTCAGAGTTTAAGGTTT
69322569 AGATTCAGAGTTTAAGGTTT
1 AGATTCAGAGTTTAAGGTTT
69322589 CAAGTTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.25, T:0.42
Consensus pattern (20 bp):
AGATTCAGAGTTTAAGGTTT
Found at i:69322621 original size:20 final size:20
Alignment explanation
Indices: 69322598--69322636 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
69322588 TCAAGTTTTT
* *
69322598 GGTTCTGGTTTAGAGTTCAA
1 GGTTCGGGTTCAGAGTTCAA
69322618 GGTTCGGGTTCAGAGTTCA
1 GGTTCGGGTTCAGAGTTCA
69322637 GAATTTAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.13, G:0.33, T:0.36
Consensus pattern (20 bp):
GGTTCGGGTTCAGAGTTCAA
Found at i:69333124 original size:20 final size:20
Alignment explanation
Indices: 69333095--69333137 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
69333085 AGCACAGTCG
69333095 TGTCCATAAGCACACGGGCA
1 TGTCCATAAGCACACGGGCA
*
69333115 TGTCCCTAAGCACACGGGCA
1 TGTCCATAAGCACACGGGCA
69333135 TGT
1 TGT
69333138 GATTTGCCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.30, G:0.26, T:0.19
Consensus pattern (20 bp):
TGTCCATAAGCACACGGGCA
Found at i:69350505 original size:5 final size:5
Alignment explanation
Indices: 69350495--69350524 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
69350485 ACAATATTTT
69350495 ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA
69350525 TATTAAATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:69350885 original size:33 final size:32
Alignment explanation
Indices: 69350815--69350899 Score: 134
Period size: 33 Copynumber: 2.6 Consensus size: 32
69350805 TTTGGTTCGC
*
69350815 TGTATTGGATTAGAGGCGTATTAGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTAGATTAGAGG
* *
69350847 CGTATTGGATTAGAGGTGTATTGGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATT-AGATTAGAGG
69350880 TGTATTGGATTAGAGGTGTA
1 TGTATTGGATTAGAGGTGTA
69350900 ATAGCTAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 20 0.42
33 28 0.58
ACGTcount: A:0.26, C:0.02, G:0.36, T:0.35
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTAGATTAGAGG
Found at i:69350896 original size:16 final size:16
Alignment explanation
Indices: 69350815--69350899 Score: 134
Period size: 16 Copynumber: 5.2 Consensus size: 16
69350805 TTTGGTTCGC
69350815 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
69350831 CGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
*
69350847 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
69350863 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
69350880 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
69350896 TGTA
1 TGTA
69350900 ATAGCTAATC
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
16 48 0.75
17 16 0.25
ACGTcount: A:0.26, C:0.02, G:0.36, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:69350964 original size:44 final size:45
Alignment explanation
Indices: 69350880--69350970 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
69350870 GGATTAGAGG
* * *
69350880 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
69350925 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
69350969 TG
1 TG
69350971 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:69351156 original size:18 final size:17
Alignment explanation
Indices: 69351135--69351169 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
69351125 TTATTATTAA
*
69351135 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
69351153 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
69351170 TCTAAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:69351354 original size:121 final size:120
Alignment explanation
Indices: 69351118--69351620 Score: 929
Period size: 120 Copynumber: 4.2 Consensus size: 120
69351108 ATCATATTTA
*
69351118 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTAAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
69351183 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
69351238 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATGAAATTCTTAATTGGA-T
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAA-T-AATT
*
69351302 AATATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
64 AATATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
69351359 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
69351424 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
69351479 AACATAATTATTATTAAATATATTTTAATTAAAA-ATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
69351543 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
69351598 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
69351621 AACTTGAAAA
Statistics
Matches: 374, Mismatches: 6, Indels: 7
0.97 0.02 0.02
Matches are distributed among these distances:
119 109 0.29
120 148 0.40
121 116 0.31
122 1 0.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:69351397 original size:18 final size:17
Alignment explanation
Indices: 69351376--69351410 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
69351366 TTATTATTAA
*
69351376 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
69351394 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
69351411 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:69351529 original size:15 final size:17
Alignment explanation
Indices: 69351494--69351528 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
69351484 AATTATTATT
*
69351494 AAATATATTTTAATTAA
1 AAATATAATTTAATTAA
69351511 AAATATAATTTAA-TAA
1 AAATATAATTTAATTAA
69351527 AA
1 AA
69351529 TTCTTAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAATATAATTTAATTAA
Found at i:69354668 original size:33 final size:33
Alignment explanation
Indices: 69354629--69354738 Score: 136
Period size: 33 Copynumber: 3.3 Consensus size: 33
69354619 ATTATAAAGC
69354629 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
69354662 ATGTATAATTGACCTAAAATTACTTGTTGGTTT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTGT
* *
69354695 AATGT-T-ATTGTCCCTAAAA-AACATTGTTGGTGT
1 -ATGTATAATTG-ACCTAAAATTA-ATTGTTGGTGT
69354728 ATGTATAATTG
1 ATGTATAATTG
69354739 TTGGTTTAAT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
32 9 0.14
33 49 0.74
34 8 0.12
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTGT
Found at i:69354745 original size:51 final size:50
Alignment explanation
Indices: 69354685--69354787 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 50
69354675 CTAAAATTAC
69354685 TTGTTGGTTTAATGTTATTGT-CCCTAAAAAACATTGTTGGTGTATGTATAA
1 TTGTTGGTTTAATGTTATT-TACCCTAAAAAACATTGTTGGTGTATG-ATAA
69354736 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGATAA
1 TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGATAA
69354786 TT
1 TT
69354788 TTTACGTATA
Statistics
Matches: 51, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
50 7 0.14
51 44 0.86
ACGTcount: A:0.28, C:0.08, G:0.18, T:0.46
Consensus pattern (50 bp):
TTGTTGGTTTAATGTTATTTACCCTAAAAAACATTGTTGGTGTATGATAA
Found at i:69361821 original size:12 final size:12
Alignment explanation
Indices: 69361806--69361830 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
69361796 AGCAAGTTAT
69361806 TCAAACATCCTA
1 TCAAACATCCTA
69361818 TCAAACATCCTA
1 TCAAACATCCTA
69361830 T
1 T
69361831 GACCCTTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (12 bp):
TCAAACATCCTA
Found at i:69362991 original size:57 final size:57
Alignment explanation
Indices: 69362861--69362974 Score: 201
Period size: 57 Copynumber: 2.0 Consensus size: 57
69362851 ATAGTTGTTA
* *
69362861 CCAAAATATCTTTTAATGTGTATATTTATGCTATCCAAATGCAATTTACAGCTGCTG
1 CCAAAATATCTTTTAATCTGTATATTTACGCTATCCAAATGCAATTTACAGCTGCTG
*
69362918 CCAAAATATCTTTTAATCTGTATATTTACGCTGTCCAAATGCAATTTACAGCTGCTG
1 CCAAAATATCTTTTAATCTGTATATTTACGCTATCCAAATGCAATTTACAGCTGCTG
69362975 TCACAATGTT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (57 bp):
CCAAAATATCTTTTAATCTGTATATTTACGCTATCCAAATGCAATTTACAGCTGCTG
Found at i:69382796 original size:24 final size:24
Alignment explanation
Indices: 69382769--69382817 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
69382759 TTATAGTTTA
69382769 TAGAAATGTATAAATAAGATGTAG
1 TAGAAATGTATAAATAAGATGTAG
69382793 TAGAAATGTATAAATAAGATGTAG
1 TAGAAATGTATAAATAAGATGTAG
69382817 T
1 T
69382818 TATGGTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.20, T:0.31
Consensus pattern (24 bp):
TAGAAATGTATAAATAAGATGTAG
Found at i:69384649 original size:24 final size:24
Alignment explanation
Indices: 69384597--69384654 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
69384587 CGTGACCATG
*
69384597 GTCTTCATCTCCACCAATGTCTTC
1 GTCTTCATCTCCACCAATGGCTTC
* ** *
69384621 ATCTTCATCTCCACCCTTGGCTTT
1 GTCTTCATCTCCACCAATGGCTTC
69384645 GTCTTCATCT
1 GTCTTCATCT
69384655 TTGTCTCCAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.14, C:0.36, G:0.09, T:0.41
Consensus pattern (24 bp):
GTCTTCATCTCCACCAATGGCTTC
Found at i:69389949 original size:53 final size:53
Alignment explanation
Indices: 69389755--69389961 Score: 204
Period size: 53 Copynumber: 3.8 Consensus size: 53
69389745 ATTAGGGTTT
* * *
69389755 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * *
69389810 AAGGATATCATGTAAG-CCATATCAAGACATGGCATTGATAAGTTACTATAAGG-
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
** * * * *
69389863 AAAAAGTCCCATGTAAGAGCATGTCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGA-TACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
** *
69389917 AAGGATACCATGTAAGACCATGTTGAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT
69389962 TCAAAAGGAT
Statistics
Matches: 122, Mismatches: 24, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
51 2 0.02
52 2 0.02
53 49 0.40
54 31 0.25
55 38 0.31
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.24
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:69389960 original size:108 final size:109
Alignment explanation
Indices: 69389762--69389961 Score: 271
Period size: 108 Copynumber: 1.8 Consensus size: 109
69389752 TTTAAGGATA
*
69389762 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGC
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGC
*
69389827 CATATCAAGACATGGCATTGATAAGTTACTATAAGGAAAAAGTC
66 CATATCAAGACATGGCAATGATAAGTTACTATAAGGAAAAAGTC
* * * *
69389871 CCATGTAAGAGCATGTCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* ** *
69389933 ACCATGTTGAGACATGGCAATGGTAAGTT
65 -CCATATCAAGACATGGCAATGATAAGTT
69389962 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
106 3 0.04
107 22 0.28
108 30 0.38
109 24 0.30
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (109 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGC
CATATCAAGACATGGCAATGATAAGTTACTATAAGGAAAAAGTC
Done.