Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 214 of 325
Found at i:69730553 original size:88 final size:88
Alignment explanation
Indices: 69730398--69730585 Score: 193
Period size: 88 Copynumber: 2.1 Consensus size: 88
69730388 TTGTTTGGCT
* ** * * * * * *
69730398 ATCTCTGTTA-AATGAAAGCCTTTATGGTGAACTTTGTTAAATGGAAGCCTTTGTGGTGAAATTT
1 ATCTCTATTATAATGAAAGCCTTTATGGCAAACTCTATTAAATGAAAGCCTTTATGGCGAAATCT
* * **
69730462 GTTAAAATGGAAGCTTTTGTAGTG
66 GTTAAAA-GAAAGCCTTTGTAGCA
*
69730486 ATCTCTATTATAA-GAAAGCCTTTATGGCAAACTCTATTATAA-GAAAGCCTTTATGGCGAACTC
1 ATCTCTATTATAATGAAAGCCTTTATGGCAAACTCTATTA-AATGAAAGCCTTTATGGCGAAATC
* *
69730549 TGTTATAAGAAAGCCTTTGTGGCA
65 TGTTAAAAGAAAGCCTTTGTAGCA
69730573 ATCTCTATTATAA
1 ATCTCTATTATAA
69730586 ATATACCTCT
Statistics
Matches: 82, Mismatches: 16, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
87 24 0.29
88 54 0.66
89 4 0.05
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.36
Consensus pattern (88 bp):
ATCTCTATTATAATGAAAGCCTTTATGGCAAACTCTATTAAATGAAAGCCTTTATGGCGAAATCT
GTTAAAAGAAAGCCTTTGTAGCA
Found at i:69730571 original size:29 final size:30
Alignment explanation
Indices: 69730400--69730585 Score: 150
Period size: 29 Copynumber: 6.4 Consensus size: 30
69730390 GTTTGGCTAT
*
69730400 CTCTGTTA-AATGAAAGCCTTTATGGTGAA
1 CTCTGTTATAATGAAAGCCTTTATGGCGAA
* * * *
69730429 CTTTGTTA-AATGGAAGCCTTTGTGGTGAA
1 CTCTGTTATAATGAAAGCCTTTATGGCGAA
* * * * * * * * *
69730458 ATTTGTTAAAATGGAAGCTTTTGTAGTGAT
1 CTCTGTTATAATGAAAGCCTTTATGGCGAA
* *
69730488 CTCTATTATAA-GAAAGCCTTTATGGCAAA
1 CTCTGTTATAATGAAAGCCTTTATGGCGAA
*
69730517 CTCTATTATAA-GAAAGCCTTTATGGCGAA
1 CTCTGTTATAATGAAAGCCTTTATGGCGAA
*
69730546 CTCTGTTATAA-GAAAGCCTTTGTGGC-AA
1 CTCTGTTATAATGAAAGCCTTTATGGCGAA
*
69730574 TCTCTATTATAA
1 -CTCTGTTATAA
69730586 ATATACCTCT
Statistics
Matches: 133, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
28 2 0.02
29 106 0.80
30 25 0.19
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.36
Consensus pattern (30 bp):
CTCTGTTATAATGAAAGCCTTTATGGCGAA
Found at i:69732501 original size:41 final size:41
Alignment explanation
Indices: 69732451--69732790 Score: 536
Period size: 41 Copynumber: 8.3 Consensus size: 41
69732441 AATTCATCAT
* *
69732451 ATTCGGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
69732492 ATTCAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
69732533 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
69732574 ATTTAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
69732615 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
69732656 ATTTAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
69732697 ATTCATATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
69732738 ATTTAGATCACCGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
69732779 ATTCATATCACC
1 ATTCAGATCACC
69732791 AATTCCAAAC
Statistics
Matches: 271, Mismatches: 28, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 271 1.00
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.30
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:69732594 original size:82 final size:82
Alignment explanation
Indices: 69732457--69732790 Score: 659
Period size: 82 Copynumber: 4.1 Consensus size: 82
69732447 TCATATTCGG
*
69732457 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
69732522 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
69732539 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
69732604 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
69732621 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
69732686 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
69732703 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
1 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
69732768 TTTATAACCTGATTCAT
66 TTTATAACCTGATTCAT
69732785 ATCACC
1 ATCACC
69732791 AATTCCAAAC
Statistics
Matches: 251, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 251 1.00
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (82 bp):
ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTTAGATCACCGGCACTTAGCCTGCTAGG
TTTATAACCTGATTCAT
Found at i:69733028 original size:19 final size:18
Alignment explanation
Indices: 69733004--69733054 Score: 57
Period size: 19 Copynumber: 2.8 Consensus size: 18
69732994 TTGTTCGATC
69733004 CACACATTTATATATATT
1 CACACATTTATATATATT
* *
69733022 ACACACATATACATATATT
1 -CACACATTTATATATATT
* *
69733041 CGCACATTAATATA
1 CACACATTTATATA
69733055 AACACAACCA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
18 10 0.38
19 16 0.62
ACGTcount: A:0.43, C:0.20, G:0.02, T:0.35
Consensus pattern (18 bp):
CACACATTTATATATATT
Found at i:69736023 original size:18 final size:18
Alignment explanation
Indices: 69735974--69736024 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 18
69735964 CCTATTGACA
69735974 TTGACATTGTGATGCCAC
1 TTGACATTGTGATGCCAC
*
69735992 TTG--A-TGTCATGCCAC
1 TTGACATTGTGATGCCAC
69736007 TTGACATTGTGATGCCAC
1 TTGACATTGTGATGCCAC
69736025 CTATTGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
15 13 0.46
16 1 0.04
17 1 0.04
18 13 0.46
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.33
Consensus pattern (18 bp):
TTGACATTGTGATGCCAC
Found at i:69738833 original size:5 final size:5
Alignment explanation
Indices: 69738825--69738959 Score: 215
Period size: 5 Copynumber: 27.6 Consensus size: 5
69738815 CTTTTGTTTT
69738825 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
69738875 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATAT- A-ATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
* *
69738923 ATGTA ATATTA ATATA ATA-A A-ATA ATATA TTATA ATA
1 ATATA ATA-TA ATATA ATATA ATATA ATATA ATATA ATA
69738960 AAAATCTTAA
Statistics
Matches: 121, Mismatches: 4, Indels: 10
0.90 0.03 0.07
Matches are distributed among these distances:
3 3 0.02
4 6 0.05
5 107 0.88
6 5 0.04
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:69742392 original size:20 final size:20
Alignment explanation
Indices: 69742363--69742431 Score: 93
Period size: 20 Copynumber: 3.5 Consensus size: 20
69742353 TATTTAAGAT
* *
69742363 TTTTTTAATAATTTTCACAA
1 TTTTTGAATAATTTTTACAA
69742383 TTTTTGAATAATTTTTACAA
1 TTTTTGAATAATTTTTACAA
** *
69742403 TTTTTGAATTTTTTTTGCAA
1 TTTTTGAATAATTTTTACAA
69742423 TTTTTGAAT
1 TTTTTGAAT
69742432 TTTTTTATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (20 bp):
TTTTTGAATAATTTTTACAA
Found at i:69742450 original size:18 final size:18
Alignment explanation
Indices: 69742438--69742485 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 18
69742428 GAATTTTTTT
*
69742438 ATTATTTATAATTATATA
1 ATTATTTATAATTTTATA
69742456 ATTATTTAT-ATTTTA-A
1 ATTATTTATAATTTTATA
*
69742472 ATAATTT-TAATTTT
1 ATTATTTATAATTTT
69742486 TAAAAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 1 0.04
16 12 0.44
17 5 0.19
18 9 0.33
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTATTTATAATTTTATA
Found at i:69742630 original size:22 final size:23
Alignment explanation
Indices: 69742605--69742647 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
69742595 TATATATATC
*
69742605 TAATAATTTTT-ATAATTTTTAA
1 TAATAATTTTTAAAAATTTTTAA
69742627 TAATAATTTTTAAAAATTTTT
1 TAATAATTTTTAAAAATTTTT
69742648 GCCTGATGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TAATAATTTTTAAAAATTTTTAA
Found at i:69743216 original size:15 final size:17
Alignment explanation
Indices: 69743195--69743235 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 17
69743185 TTTAAAATTT
69743195 TTAATATAAT-AATAAA
1 TTAATATAATAAATAAA
*
69743211 -TAATAT-TTAAATAAA
1 TTAATATAATAAATAAA
69743226 TTAATATAAT
1 TTAATATAAT
69743236 GATACAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 5
0.74 0.07 0.19
Matches are distributed among these distances:
14 1 0.05
15 12 0.60
16 6 0.30
17 1 0.05
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TTAATATAATAAATAAA
Found at i:69746048 original size:22 final size:22
Alignment explanation
Indices: 69746005--69746049 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
69745995 TCTGAGCTAA
* *
69746005 TGAACAGTAAGCTTTATTGAGC
1 TGAACAGTAAGCTTCATGGAGC
69746027 TGAACAGTAAG-TTCATAGGAGC
1 TGAACAGTAAGCTTCAT-GGAGC
69746049 T
1 T
69746050 AAAACGGTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (22 bp):
TGAACAGTAAGCTTCATGGAGC
Found at i:69746096 original size:24 final size:24
Alignment explanation
Indices: 69745985--69746098 Score: 76
Period size: 24 Copynumber: 4.8 Consensus size: 24
69745975 GCCATGATCG
*
69745985 GTAAGCTCCTTCTGAGCT-AATGAACA
1 GTAAGCT-CTTATGAGCTGAA--AACA
69746011 GTAAGCT-TTATTGAGCTG--AACA
1 GTAAGCTCTTA-TGAGCTGAAAACA
* * * *
69746033 GTAAGTTCATAGGAGCT-AAAACG
1 GTAAGCTCTTATGAGCTGAAAACA
** *
69746056 GTAAGCTCCAATTAGCTGAAAACA
1 GTAAGCTCTTATGAGCTGAAAACA
*
69746080 GTAAGCTCTTACGAGCTGA
1 GTAAGCTCTTATGAGCTGA
69746099 TATATCGGTA
Statistics
Matches: 67, Mismatches: 15, Indels: 14
0.70 0.16 0.15
Matches are distributed among these distances:
22 15 0.22
23 17 0.25
24 22 0.33
25 6 0.09
26 7 0.10
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.25
Consensus pattern (24 bp):
GTAAGCTCTTATGAGCTGAAAACA
Found at i:69754178 original size:47 final size:47
Alignment explanation
Indices: 69754109--69754200 Score: 175
Period size: 47 Copynumber: 2.0 Consensus size: 47
69754099 TACTAAACCA
69754109 CTTACTCAAAGCAAACTAATTATAAAGATTATAAGCATCTTCTTCGC
1 CTTACTCAAAGCAAACTAATTATAAAGATTATAAGCATCTTCTTCGC
*
69754156 CTTACTCAAAGCAAACTGATTATAAAGATTATAAGCATCTTCTTC
1 CTTACTCAAAGCAAACTAATTATAAAGATTATAAGCATCTTCTTC
69754201 AGAATGCACT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTACTCAAAGCAAACTAATTATAAAGATTATAAGCATCTTCTTCGC
Found at i:69763822 original size:18 final size:18
Alignment explanation
Indices: 69763799--69763852 Score: 99
Period size: 18 Copynumber: 3.0 Consensus size: 18
69763789 AATGATTGTC
69763799 TTTAGTAGTTGTTTACGA
1 TTTAGTAGTTGTTTACGA
69763817 TTTAGTAGTTGTTTACGA
1 TTTAGTAGTTGTTTACGA
*
69763835 TTTAGTAGTTCTTTACGA
1 TTTAGTAGTTGTTTACGA
69763853 AACTCAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.22, C:0.07, G:0.20, T:0.50
Consensus pattern (18 bp):
TTTAGTAGTTGTTTACGA
Found at i:69769338 original size:12 final size:13
Alignment explanation
Indices: 69769315--69769346 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
69769305 TATAATATTT
69769315 TAATAA-AATAAA
1 TAATAATAATAAA
69769327 TAA-AATAATAAA
1 TAATAATAATAAA
69769339 TAATAATA
1 TAATAATA
69769347 TTTTAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 12 0.67
13 4 0.22
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
TAATAATAATAAA
Found at i:69769628 original size:8 final size:7
Alignment explanation
Indices: 69769610--69769666 Score: 55
Period size: 7 Copynumber: 7.9 Consensus size: 7
69769600 TTTTTATTAA
69769610 ATAAAAT
1 ATAAAAT
*
69769617 A-AAATT
1 ATAAAAT
69769623 ATAAAAACT
1 AT-AAAA-T
69769632 ATAAAAT
1 ATAAAAT
69769639 AT-AAAT
1 ATAAAAT
69769645 ATAAAACT
1 ATAAAA-T
69769653 AATAAAAT
1 -ATAAAAT
69769661 ATAAAA
1 ATAAAA
69769667 ATTTGTTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
6 11 0.26
7 13 0.31
8 9 0.21
9 9 0.21
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (7 bp):
ATAAAAT
Found at i:69769638 original size:22 final size:22
Alignment explanation
Indices: 69769609--69769665 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
69769599 ATTTTTATTA
69769609 AATAAAATA-AAATTATAAAAACT
1 AATAAAATATAAA-TAT-AAAACT
69769632 -ATAAAATATAAATATAAAACT
1 AATAAAATATAAATATAAAACT
69769653 AATAAAATATAAA
1 AATAAAATATAAA
69769666 AATTTGTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.19
22 23 0.72
23 3 0.09
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (22 bp):
AATAAAATATAAATATAAAACT
Found at i:69769668 original size:30 final size:29
Alignment explanation
Indices: 69769610--69769666 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
69769600 TTTTTATTAA
*
69769610 ATAAAATAAAATTATAAAAACTATAAAAT
1 ATAAAATAAAATAATAAAAACTATAAAAT
69769639 ATAAATATAAAACTAAT-AAAA-TATAAAA
1 ATAAA-ATAAAA-TAATAAAAACTATAAAA
69769667 ATTTGTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 12 0.48
30 10 0.40
31 3 0.12
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (29 bp):
ATAAAATAAAATAATAAAAACTATAAAAT
Found at i:69770058 original size:36 final size:36
Alignment explanation
Indices: 69770018--69770101 Score: 86
Period size: 36 Copynumber: 2.4 Consensus size: 36
69770008 AAATAGTTGA
69770018 AAAATTAAATAAATGAAAAAGTTTC-TTTATAATTTT
1 AAAATTAAATAAATGAAAAAGTTTCTTTTA-AATTTT
* * *
69770054 AAAATATAAA-AAATTAACATGTTTCTTTTAAATTTT
1 AAAAT-TAAATAAATGAAAAAGTTTCTTTTAAATTTT
*
69770090 -TAA-TAAATAAAT
1 AAAATTAAATAAAT
69770102 AGTGAAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
33 4 0.10
34 4 0.10
35 2 0.05
36 23 0.56
37 8 0.20
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (36 bp):
AAAATTAAATAAATGAAAAAGTTTCTTTTAAATTTT
Found at i:69771888 original size:48 final size:48
Alignment explanation
Indices: 69771804--69771969 Score: 199
Period size: 48 Copynumber: 3.5 Consensus size: 48
69771794 ATACTAAGGT
*
69771804 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
* * * * * * * **
69771852 TATGAGAGCTAGTGTAAAACTATGTCTGGGACATGGCA-CTGGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC-GACATTTA
*
69771900 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
* *
69771948 TATGAGAGCTACTGTAAGACCA
1 TATGAGAGCCAGTGTAAGACCA
69771970 CGTCCGGATT
Statistics
Matches: 93, Mismatches: 23, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
47 1 0.01
48 91 0.98
49 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTA
Found at i:69771984 original size:96 final size:96
Alignment explanation
Indices: 69771804--69772002 Score: 294
Period size: 96 Copynumber: 2.1 Consensus size: 96
69771794 ATACTAAGGT
*
69771804 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTACTGTAA
* * *
69771869 AACTATGTCTGGGACATGGCA-CTGGCCTCGA
66 AACCACGTCTCGGACATGGCATC-GGCCTCGA
69771900 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTACTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTACTGTAA
* * *
69771965 GACCACGTC-CGGATTATGGCATCGGTCTCGA
66 AACCACGTCTCGGA-CATGGCATCGGCCTCGA
*
69771996 CATGTGA
1 TATGTGA
69772003 TGTAACACCC
Statistics
Matches: 93, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
95 3 0.03
96 89 0.96
97 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTACTGTAA
AACCACGTCTCGGACATGGCATCGGCCTCGA
Found at i:69774445 original size:15 final size:16
Alignment explanation
Indices: 69774425--69774461 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
69774415 CAATTAAATC
*
69774425 ATAATAATTAT-TATT
1 ATAATAAATATCTATT
69774440 ATAATAAATATCTATT
1 ATAATAAATATCTATT
69774456 -TAATAA
1 ATAATAA
69774462 CAAATATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAATAAATATCTATT
Found at i:69774597 original size:32 final size:33
Alignment explanation
Indices: 69774552--69774625 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 33
69774542 TTTATTTATC
69774552 ATAA-AAAA-ATC-TTTTACTAATTA-ATAGTAA
1 ATAATAAAATATCTTTTTACTAATTATATA-TAA
69774582 ATAATAAAATATCTTTTTACTAATTATATATAA
1 ATAATAAAATATCTTTTTACTAATTATATATAA
69774615 ATAATACAAAT
1 ATAATA-AAAT
69774626 GTACTTATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
30 4 0.10
31 4 0.10
32 3 0.08
33 21 0.54
34 7 0.18
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.39
Consensus pattern (33 bp):
ATAATAAAATATCTTTTTACTAATTATATATAA
Found at i:69776543 original size:14 final size:14
Alignment explanation
Indices: 69776507--69776545 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
69776497 TTGTTTCACT
*
69776507 GAAAATGACTTCCG
1 GAAAATGATTTCCG
*
69776521 GAAAATGATTTCTG
1 GAAAATGATTTCCG
69776535 GAAAATGATTT
1 GAAAATGATTT
69776546 ACTTTTCTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCCG
Found at i:69777016 original size:15 final size:15
Alignment explanation
Indices: 69776998--69777049 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
69776988 ATTACAAAAC
69776998 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
69777013 ATTTATAATTGTAATACAT
1 ATTTATTA-T-TAAT--AT
*
69777032 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
69777047 ATT
1 ATT
69777050 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:69777113 original size:16 final size:16
Alignment explanation
Indices: 69777082--69777118 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
69777072 ATGTGAATAA
69777082 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
69777098 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
69777114 TATTA
1 TATTA
69777119 AATAAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:69777169 original size:22 final size:22
Alignment explanation
Indices: 69777129--69777184 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
69777119 AATAAAATTG
*
69777129 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
69777149 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
69777171 TATTAATAATTTAT
1 AAATAATAAATTAT
69777185 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:69777623 original size:22 final size:21
Alignment explanation
Indices: 69777562--69777624 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 21
69777552 CCTTTACACT
69777562 ACGATGTGGATGAACCACT-A
1 ACGATGTGGATGAACCACTAA
* ** *
69777582 ACGTTGCAGATGAACTACTAGA
1 ACGATGTGGATGAACCACTA-A
*
69777604 ACGATGTGGATAAACCACTAA
1 ACGATGTGGATGAACCACTAA
69777625 TAATAAAAAG
Statistics
Matches: 32, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
20 15 0.47
21 1 0.03
22 16 0.50
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (21 bp):
ACGATGTGGATGAACCACTAA
Found at i:69779938 original size:48 final size:48
Alignment explanation
Indices: 69779863--69780088 Score: 198
Period size: 48 Copynumber: 4.8 Consensus size: 48
69779853 CACATAGTCG
* * *
69779863 GATGCCAATGCCATATCCCGGATATGGTCTTACATGGGATCACATATT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATT
* * *
69779911 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATCGGATCATGCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA--CATATT
* ** * * *
69779961 GAAGCC---G--ATAACCCAG-CTATGGTCTTACACGATG-TCTCATATT
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATG-GGATCACATATT
* * *
69780004 GATGCCAATGCCATGTCTCAAACATGGTCTTACATGGGATCATAT-TT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATT
* *
69780051 CGATGCCAATGCCATGTCCCAAATATGGTCTTACATGG
1 -GATGCCAATGCCATGTCCCAGACATGGTCTTACATGG
69780089 TTCATGCATA
Statistics
Matches: 141, Mismatches: 25, Indels: 24
0.74 0.13 0.13
Matches are distributed among these distances:
43 10 0.07
44 1 0.01
45 20 0.14
46 2 0.01
47 4 0.03
48 93 0.66
49 1 0.01
50 10 0.07
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATT
Found at i:69780185 original size:11 final size:11
Alignment explanation
Indices: 69780169--69780211 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
69780159 TATCAATTCT
69780169 TCGTCGAATCG
1 TCGTCGAATCG
69780180 TCGTCGAATCG
1 TCGTCGAATCG
*
69780191 TCGTCGAATCT
1 TCGTCGAATCG
*
69780202 TCATCGAATC
1 TCGTCGAATC
69780212 ATCATTAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (11 bp):
TCGTCGAATCG
Found at i:69780216 original size:11 final size:11
Alignment explanation
Indices: 69780172--69780216 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
69780162 CAATTCTTCG
*
69780172 TCGAATCGTCG
1 TCGAATCGTCA
*
69780183 TCGAATCGTCG
1 TCGAATCGTCA
*
69780194 TCGAATCTTCA
1 TCGAATCGTCA
*
69780205 TCGAATCATCA
1 TCGAATCGTCA
69780216 T
1 T
69780217 TAATCAATTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (11 bp):
TCGAATCGTCA
Found at i:69785339 original size:26 final size:28
Alignment explanation
Indices: 69785289--69785386 Score: 121
Period size: 28 Copynumber: 3.6 Consensus size: 28
69785279 GATAAAACTA
*
69785289 TAAAATATGAAAAATAAGGGCAAAAATG
1 TAAAATCTGAAAAATAAGGGCAAAAATG
* *
69785317 TAAAATCT-AAAAA-AAGGGTAAAACTG
1 TAAAATCTGAAAAATAAGGGCAAAAATG
* *
69785343 TAAAATTTGAAAAATATA-GGCAAAAGTG
1 TAAAATCTGAAAAATA-AGGGCAAAAATG
69785371 TAAAATCTGAAAAATA
1 TAAAATCTGAAAAATA
69785387 GAGGATACAC
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 18 0.30
27 10 0.17
28 31 0.52
29 1 0.02
ACGTcount: A:0.58, C:0.05, G:0.15, T:0.21
Consensus pattern (28 bp):
TAAAATCTGAAAAATAAGGGCAAAAATG
Found at i:69785347 original size:54 final size:54
Alignment explanation
Indices: 69785281--69785384 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
69785271 AGTATGGGGA
69785281 TAAAACTATAAAATATGAAAAATA-AGGGCAAAAATGTAAAATCTAAAAAAAGGG
1 TAAAACTATAAAATATGAAAAATATA-GGCAAAAATGTAAAATCTAAAAAAAGGG
* * * *
69785335 TAAAACTGTAAAATTTGAAAAATATAGGCAAAAGTGTAAAATCTGAAAAA
1 TAAAACTATAAAATATGAAAAATATAGGCAAAAATGTAAAATCTAAAAAA
69785385 TAGAGGATAC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 44 0.98
55 1 0.02
ACGTcount: A:0.59, C:0.06, G:0.14, T:0.21
Consensus pattern (54 bp):
TAAAACTATAAAATATGAAAAATATAGGCAAAAATGTAAAATCTAAAAAAAGGG
Found at i:69786643 original size:27 final size:27
Alignment explanation
Indices: 69786613--69786667 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
69786603 AACCTAAGCT
69786613 CTCTAAAGAGGAACACTAACACTTAAC
1 CTCTAAAGAGGAACACTAACACTTAAC
69786640 CTCTAAAGAGGAACACTAACACTTAAC
1 CTCTAAAGAGGAACACTAACACTTAAC
69786667 C
1 C
69786668 ACTTAGTCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.27, G:0.11, T:0.18
Consensus pattern (27 bp):
CTCTAAAGAGGAACACTAACACTTAAC
Found at i:69787017 original size:21 final size:21
Alignment explanation
Indices: 69786976--69787017 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
69786966 ATTAATATAA
* *
69786976 TAATACTTGATTATATTATTT
1 TAATACTTAATTATATCATTT
69786997 TAATACTTCAATTATA-CATTT
1 TAATACTT-AATTATATCATTT
69787018 ATGACCTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (21 bp):
TAATACTTAATTATATCATTT
Found at i:69790097 original size:65 final size:67
Alignment explanation
Indices: 69789993--69790119 Score: 213
Period size: 65 Copynumber: 1.9 Consensus size: 67
69789983 TATTTAACAA
* *
69789993 ATTTTTTTCTCTCATTTTTTCTCTTGCGAAACACCA-TTTT-TTCTTCAAAACACATGGTTGCTG
1 ATTTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGCTG
69790056 CC
66 CC
*
69790058 ATTTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACATATGGTTG
1 ATTTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTG
69790120 GCTTATTTCA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
65 34 0.60
66 4 0.07
67 19 0.33
ACGTcount: A:0.20, C:0.24, G:0.08, T:0.47
Consensus pattern (67 bp):
ATTTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGCTG
CC
Found at i:69790677 original size:36 final size:36
Alignment explanation
Indices: 69790630--69790702 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
69790620 TTTATTTTTA
69790630 TAAATTTCTCTTATTGGATTTGATGAAATATTGAAT
1 TAAATTTCTCTTATTGGATTTGATGAAATATTGAAT
69790666 TAAATTTCTCTTATTGGATTTGATGAAATATTGAAT
1 TAAATTTCTCTTATTGGATTTGATGAAATATTGAAT
69790702 T
1 T
69790703 TTTGAATATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.48
Consensus pattern (36 bp):
TAAATTTCTCTTATTGGATTTGATGAAATATTGAAT
Found at i:69797510 original size:19 final size:19
Alignment explanation
Indices: 69797486--69797524 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
69797476 AATATGTAAA
69797486 ATCACGTACAACACATGTG
1 ATCACGTACAACACATGTG
69797505 ATCACGTACAACACATGTG
1 ATCACGTACAACACATGTG
69797524 A
1 A
69797525 CATTAGAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.26, G:0.15, T:0.21
Consensus pattern (19 bp):
ATCACGTACAACACATGTG
Found at i:69797867 original size:13 final size:13
Alignment explanation
Indices: 69797830--69797870 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
69797820 TTCAAACCAT
*
69797830 AAAAACTAAACTC
1 AAAACCTAAACTC
*
69797843 CAAACCTCAAACTC
1 AAAACCT-AAACTC
69797857 AAAACCTAAACTC
1 AAAACCTAAACTC
69797870 A
1 A
69797871 TGACCCCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.54, C:0.32, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAACCTAAACTC
Found at i:69803682 original size:48 final size:48
Alignment explanation
Indices: 69803627--69803940 Score: 316
Period size: 48 Copynumber: 6.5 Consensus size: 48
69803617 TGCACTAGTA
*
69803627 TAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
* * ** *
69803675 TAAGACCATGTTTGGAACATGGCATCGGTAATG-TAATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACGAT-ATGAGAGCCAGTG
* * * *
69803723 TAAGACCATGTCTGGGACATGGCATCAG-CATTGATATGTA-CGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATG-AGAGCCAGTG
*
69803771 TAAGACCATGTCTGGGACATGGCATCAGCCAC-ATTATGAGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCCAGTG
* *** * * *
69803819 TAAGACGATGTCTGGGACATGGCATC-AATATTGAGAT-AGGAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGA-GAGCCAGTG
* * * *
69803867 TAAGACCATGTCTAGGACATGGCATCGGCCTCGACATGTGAGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
* *
69803915 TAAGACCATGTTTGGAACATGGCATC
1 TAAGACCATGTCTGGGACATGGCATC
69803941 AGCAATTCAC
Statistics
Matches: 219, Mismatches: 35, Indels: 24
0.79 0.13 0.09
Matches are distributed among these distances:
47 6 0.03
48 208 0.95
49 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
Found at i:69803870 original size:144 final size:144
Alignment explanation
Indices: 69803610--69803943 Score: 424
Period size: 144 Copynumber: 2.3 Consensus size: 144
69803600 GACATTTGGG
* * * * *
69803610 TGATATGTGCACTAGTATAAGACCATGTCTAGGACATGGCATCGGCCACGATATGAGAGCCAGTG
1 TGATATGTACGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTG
* ** *
69803675 TAAGACCATGTTTGGAACATGGCATCGGTAATGTAATGAGAGCCAGTGTAAGACCATGTCTGGGA
66 TAAGACCATGTCTGGAACATGGCATCAATAATGTAATGAGAGCCAGTGTAAGACCATGTCTAGGA
69803740 CATGGCATCAGCAT
131 CATGGCATCAGCAT
69803754 TGATATGTACGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCAC-ATTATGAGAGCCAGT
1 TGATATGTACGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGA-TATGAGAGCCAGT
* * * *
69803818 GTAAGACGATGTCTGGGACATGGCATCAATATTG-AGAT-AGGAGCTAGTGTAAGACCATGTCTA
65 GTAAGACCATGTCTGGAACATGGCATCAATAATGTA-ATGA-GAGCCAGTGTAAGACCATGTCTA
* *
69803881 GGACATGGCATCGGCCT
128 GGACATGGCATCAGCAT
* * * * *
69803898 CGACATGTGA-GCCAGTGTAAGACCATGTTTGGAACATGGCATCAGC
1 TGATATGT-ACGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
69803944 AATTCACCCT
Statistics
Matches: 166, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
143 3 0.02
144 162 0.98
145 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (144 bp):
TGATATGTACGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCACGATATGAGAGCCAGTG
TAAGACCATGTCTGGAACATGGCATCAATAATGTAATGAGAGCCAGTGTAAGACCATGTCTAGGA
CATGGCATCAGCAT
Found at i:69811513 original size:96 final size:95
Alignment explanation
Indices: 69811373--69811695 Score: 369
Period size: 96 Copynumber: 3.4 Consensus size: 95
69811363 TGATATGTGT
* * * * * *
69811373 GCTAGTCTAAGACCATGTTTGGGACATGGCATCAGCCA-CGATATGAGAGCCAGTGTAGGACCAT
1 GCTAGTGTAAGACCATGTTTGGGACATGACATC-GGCATTGATATGAGAGCTAGTGTAAGACCAT
* * *
69811437 GTTTGGAACATGGCATCAACAATCTAATGAGA
65 GTCTGGGACATGGCATCGAC-ATCTAATGAGA
* * * *
69811469 GCTAGTGTAAGATCATGTTTGGGACATGACATCGGCATTAATATGTGCGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTTTGGGACATGACATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
* *
69811534 TCTGGGACATGGCATCGACCATATTATGAGA
66 TCTGGGACATGGCATCGA-CATCTAATGAGA
* * * * *
69811565 GCCAGTGTAAGACTATGGTTGGGACATGACATTGGCATTGAGATGAGAGCTAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTTTGGGACATGACATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
* * * *
69811630 TCTGGGACATGGCATCGGCCTCGACATGTGA
66 TCTGGGACATGGCATCGACATCTA-ATGAGA
* *
69811661 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGG
1 GCTAGTGTAAGACCATGTTTGGGACATGACATCGG
69811696 TAATTCACCC
Statistics
Matches: 188, Mismatches: 36, Indels: 6
0.82 0.16 0.03
Matches are distributed among these distances:
95 5 0.03
96 182 0.97
97 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (95 bp):
GCTAGTGTAAGACCATGTTTGGGACATGACATCGGCATTGATATGAGAGCTAGTGTAAGACCATG
TCTGGGACATGGCATCGACATCTAATGAGA
Found at i:69811630 original size:144 final size:145
Alignment explanation
Indices: 69811365--69811694 Score: 409
Period size: 144 Copynumber: 2.3 Consensus size: 145
69811355 CATTTGGGTG
* *
69811365 ATATGTGTGCTAGTCTAAGACCATGTTTGGGACATGGCATC-AGCCACGATATGAGAGCCAGTGT
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGAGCCACGATATGAGAGCCAGTGT
* * * * *
69811429 AGGACCATGTTTGGAACATGGCATCAACAATCTAATGAGAGCTAGTGTAAGATCATGTTTGGGAC
66 AAGACCATGGTTGGAACATGACATCAACAATCTAATGAGAGCTAGTGTAAGACCATGTCTGGGAC
*
69811494 ATGACATCGGCATTA
131 ATGACATCGGCATCA
* * *
69811509 ATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCA-TATTATGAGAGCCAGTG
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGAGCCACGA-TATGAGAGCCAGTG
* * ***
69811572 TAAGACTATGGTTGGGACATGACATTGGC-AT-TGAGATGAGAGCTAGTGTAAGACCATGTCTGG
65 TAAGACCATGGTTGGAACATGACATCAACAATCT-A-ATGAGAGCTAGTGTAAGACCATGTCTGG
* * *
69811635 GACATGGCATCGGCCTCG
128 GACATGACATCGGCATCA
* *
69811653 ACATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCG
1 ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCG
69811695 GTAATTCACC
Statistics
Matches: 160, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
142 1 0.01
143 4 0.03
144 154 0.96
145 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (145 bp):
ATATGTGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGAGCCACGATATGAGAGCCAGTGT
AAGACCATGGTTGGAACATGACATCAACAATCTAATGAGAGCTAGTGTAAGACCATGTCTGGGAC
ATGACATCGGCATCA
Found at i:69811695 original size:48 final size:48
Alignment explanation
Indices: 69811364--69811695 Score: 330
Period size: 48 Copynumber: 6.9 Consensus size: 48
69811354 ACATTTGGGT
* * * *
69811364 GATATGTGTGCTAGTCTAAGACCATGTTTGGGACATGGCATCAGCCA-C
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC-GGCATC
* * * **
69811412 GATATGAGAGCCAGTGTAGGACCATGTTTGGAACATGGCATCAACAATC
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGC-ATC
* * * *
69811461 TA-ATGAGAGCTAGTGTAAGATCATGTTTGGGACATGACATCGGCATT
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATC
* * * * *
69811508 AATATGTGCGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAT-
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCG-GCATC
* * * * * *
69811556 -ATTATGAGAGCCAGTGTAAGACTATGGTTGGGACATGACATTGGCATT
1 GA-TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATC
* * *
69811604 GAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATC
* * *
69811652 GACATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGG
1 GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG
69811696 TAATTCACCC
Statistics
Matches: 231, Mismatches: 46, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
47 8 0.03
48 217 0.94
49 6 0.03
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (48 bp):
GATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATC
Found at i:69812368 original size:35 final size:35
Alignment explanation
Indices: 69812329--69812412 Score: 114
Period size: 35 Copynumber: 2.4 Consensus size: 35
69812319 GACGATGGTA
* *
69812329 AGGTCCTTCGGGGTGACACCATTAAAATGATTATT
1 AGGTCCTTTGGGGTGACACCATGAAAATGATTATT
* * **
69812364 AGGTCCTTTAGGGTGATACTGTGAAAATGATTATT
1 AGGTCCTTTGGGGTGACACCATGAAAATGATTATT
69812399 AGGTCCTTTGGGGT
1 AGGTCCTTTGGGGT
69812413 AAGGCCTTGA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (35 bp):
AGGTCCTTTGGGGTGACACCATGAAAATGATTATT
Found at i:69812530 original size:64 final size:67
Alignment explanation
Indices: 69812462--69812591 Score: 169
Period size: 68 Copynumber: 2.0 Consensus size: 67
69812452 GACGGTGGCC
* * * *
69812462 ACCAATAGAGTCCG-TG-ACATTAAACATGGGGTTAT-ACGATGT-AATCTATAGCTCGGCTATG
1 ACCAACAGAGTCCGCAGAACATTAAACATGGGCTTATAACGA-GTAAAACTATAGCTCGGCTATG
69812523 GAA
65 GAA
*
69812526 ACCAACAGAGTCCGCCAGAACATTAAACATGGGCTTATAATGAGTAAAACTATAGCTCGGCTATG
1 ACCAACAGAGTCCG-CAGAACATTAAACATGGGCTTATAACGAGTAAAACTATAGCTCGGCTATG
69812591 G
65 G
69812592 CATCAGGACA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
64 13 0.23
66 1 0.02
67 20 0.36
68 22 0.39
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (67 bp):
ACCAACAGAGTCCGCAGAACATTAAACATGGGCTTATAACGAGTAAAACTATAGCTCGGCTATGG
AA
Found at i:69814213 original size:25 final size:23
Alignment explanation
Indices: 69814176--69814254 Score: 79
Period size: 25 Copynumber: 3.3 Consensus size: 23
69814166 TAATATAAAG
*
69814176 AAAATCACTTTAATATTAAATTAAT
1 AAAAT-ACTTTAATATTAAA-TATT
69814201 AAAATACTGTTAATA-TAAATATT
1 AAAATACT-TTAATATTAAATATT
* *
69814224 AAATTTAATTTAATATTAAACTATT
1 AAA-ATACTTTAATATTAAA-TATT
69814249 AAAATA
1 AAAATA
69814255 ATATTATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
23 12 0.26
24 16 0.35
25 18 0.39
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (23 bp):
AAAATACTTTAATATTAAATATT
Found at i:69815991 original size:21 final size:21
Alignment explanation
Indices: 69815967--69816015 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
69815957 TAATACATGG
*
69815967 TATCGATACCTTATTTAAAAA
1 TATCGATACCTTAGTTAAAAA
*
69815988 TATCGATA-ATTAGTTAAAAA
1 TATCGATACCTTAGTTAAAAA
69816008 T-T-GATACC
1 TATCGATACC
69816016 ATTTGGCATT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 4 0.17
19 1 0.04
20 11 0.46
21 8 0.33
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.37
Consensus pattern (21 bp):
TATCGATACCTTAGTTAAAAA
Found at i:69822861 original size:27 final size:26
Alignment explanation
Indices: 69822824--69822935 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
69822814 AGCATGGCTG
* *
69822824 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
69822850 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
69822878 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
69822905 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
69822932 CCAG
1 CCAG
69822936 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:69822916 original size:54 final size:54
Alignment explanation
Indices: 69822824--69822935 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
69822814 AGCATGGCTG
* *
69822824 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
69822878 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
69822932 CCAG
1 CCAG
69822936 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:69827035 original size:20 final size:21
Alignment explanation
Indices: 69826998--69827037 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
69826988 ACACGGTATT
* *
69826998 GATACCTTATTTACAAATATC
1 GATACCTTAGTTAAAAATATC
69827019 GATA-CTTAGTTAAAAATAT
1 GATACCTTAGTTAAAAATAT
69827038 ATACCATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.38
Consensus pattern (21 bp):
GATACCTTAGTTAAAAATATC
Found at i:69829290 original size:40 final size:40
Alignment explanation
Indices: 69829229--69829316 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
69829219 ACAATTTTAA
*
69829229 AATCAAGTTAGAATAAGTTTAAC-CAAGTCAAAATGA-TTTC
1 AATCAAGTTAAAATAAGTTTAACAC-A-TCAAAATGATTTTC
* *
69829269 AATCAAGTTAAAATCATTTTAACACATCAAAATGATTTTC
1 AATCAAGTTAAAATAAGTTTAACACATCAAAATGATTTTC
*
69829309 AAACAAGT
1 AATCAAGT
69829317 CATAATTGTT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
39 9 0.21
40 32 0.76
41 1 0.02
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.31
Consensus pattern (40 bp):
AATCAAGTTAAAATAAGTTTAACACATCAAAATGATTTTC
Found at i:69829306 original size:19 final size:20
Alignment explanation
Indices: 69829246--69829318 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 20
69829236 TTAGAATAAG
*
69829246 TTTAACCAAGTCAAAATGAT
1 TTTAATCAAGTCAAAATGAT
* * *
69829266 TTCAATCAAGTTAAAATCAT
1 TTTAATCAAGTCAAAATGAT
69829286 TTTAA-CACA-TCAAAATGAT
1 TTTAATCA-AGTCAAAATGAT
*
69829305 TTTCAAACAAGTCA
1 TTT-AATCAAGTCA
69829319 TAATTGTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
19 13 0.31
20 24 0.57
21 5 0.12
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.32
Consensus pattern (20 bp):
TTTAATCAAGTCAAAATGAT
Found at i:69829438 original size:33 final size:33
Alignment explanation
Indices: 69829374--69829441 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
69829364 GATAATTTTG
*
69829374 AAATTATCAATACCCTTAGAAAAACTGAGACCA
1 AAATTATCAATACCCTTAGAAAAACTAAGACCA
*
69829407 AAATTATCGATACCCTTAGAAAAA-TCAAGACCA
1 AAATTATCAATACCCTTAGAAAAACT-AAGACCA
69829440 AA
1 AA
69829442 CTTGTATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 1 0.03
33 31 0.97
ACGTcount: A:0.50, C:0.21, G:0.09, T:0.21
Consensus pattern (33 bp):
AAATTATCAATACCCTTAGAAAAACTAAGACCA
Found at i:69829535 original size:22 final size:20
Alignment explanation
Indices: 69829495--69829535 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
69829485 TTTTTAAGGT
*
69829495 ATCGATATTTTCTAAAAATA
1 ATCGATATTTCCTAAAAATA
69829515 ATCGATACTTTCCTTAAAAAT
1 ATCGATA-TTTCC-TAAAAAT
69829536 GATACCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 4 0.22
22 7 0.39
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (20 bp):
ATCGATATTTCCTAAAAATA
Found at i:69831989 original size:42 final size:42
Alignment explanation
Indices: 69831896--69831989 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 42
69831886 CATGTGTCTA
* * ** *
69831896 AGCCGTGTCTGACACACGGTCAGCCCTATGGGTGTGTTGCTC
1 AGCCGTGTGTGACACACGGTCAACCCTATGGGCATGTTGCAC
* *
69831938 GGCCATGTGTGACACACGGTCAACCCTATGGGCATGTTGCAC
1 AGCCGTGTGTGACACACGGTCAACCCTATGGGCATGTTGCAC
69831980 AGCCGTGTGT
1 AGCCGTGTGT
69831990 CTCTGCACTT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (42 bp):
AGCCGTGTGTGACACACGGTCAACCCTATGGGCATGTTGCAC
Found at i:69832215 original size:28 final size:28
Alignment explanation
Indices: 69832175--69832234 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
69832165 GCGATAACAT
* **
69832175 GGGCGTGTTTAGGCCATGTGAGGGACAC
1 GGGCGTGTCTAGGCCATGTGAAAGACAC
69832203 GGGCGTGTCTAGGCCATGTGAAAGACAC
1 GGGCGTGTCTAGGCCATGTGAAAGACAC
69832231 GGGC
1 GGGC
69832235 CAAGAACACG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.20, C:0.20, G:0.42, T:0.18
Consensus pattern (28 bp):
GGGCGTGTCTAGGCCATGTGAAAGACAC
Found at i:69835668 original size:8 final size:8
Alignment explanation
Indices: 69835655--69835683 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
69835645 TTATAAAATC
69835655 TTTTTTAT
1 TTTTTTAT
69835663 TTTTTTA-
1 TTTTTTAT
69835670 TTTTTTAT
1 TTTTTTAT
69835678 TTTTTT
1 TTTTTT
69835684 GAATTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (8 bp):
TTTTTTAT
Found at i:69835675 original size:15 final size:15
Alignment explanation
Indices: 69835655--69835683 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
69835645 TTATAAAATC
69835655 TTTTTTATTTTTTTA
1 TTTTTTATTTTTTTA
69835670 TTTTTTATTTTTTT
1 TTTTTTATTTTTTT
69835684 GAATTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTATTTTTTTA
Found at i:69837941 original size:16 final size:17
Alignment explanation
Indices: 69837910--69837942 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
69837900 ATTAGTGCGT
*
69837910 TAAAATTTTTATATAAA
1 TAAAATTTTAATATAAA
69837927 TAAAA-TTTAATATAAA
1 TAAAATTTTAATATAAA
69837943 AATTAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TAAAATTTTAATATAAA
Found at i:69837945 original size:18 final size:17
Alignment explanation
Indices: 69837910--69837952 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
69837900 ATTAGTGCGT
* *
69837910 TAAAATTTTTATATAAA
1 TAAAATTTATATAAAAA
69837927 TAAAATTTAATATAAAAA
1 TAAAATTT-ATATAAAAA
*
69837945 TTAAATTT
1 TAAAATTT
69837953 GACTTATAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAAATTTATATAAAAA
Found at i:69855041 original size:3 final size:3
Alignment explanation
Indices: 69855033--69855067 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
69855023 TTGAACGTCC
69855033 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
69855068 AAATAAAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:69863053 original size:19 final size:20
Alignment explanation
Indices: 69863016--69863054 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
69863006 GAATTTAAAT
69863016 GGGAAAATATATTCTGAAAA
1 GGGAAAATATATTCTGAAAA
* *
69863036 GGGAAATTATCTTC-GAAAA
1 GGGAAAATATATTCTGAAAA
69863055 ATAATACATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.46, C:0.08, G:0.21, T:0.26
Consensus pattern (20 bp):
GGGAAAATATATTCTGAAAA
Found at i:69864437 original size:25 final size:25
Alignment explanation
Indices: 69864409--69864469 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 25
69864399 CTTGCTTGAA
*
69864409 CTTCCCGATATATGGCTATCTGGAG
1 CTTCCCGTTATATGGCTATCTGGAG
* *
69864434 CTTCCCGTTA-ATGGCTCTTTGGAG
1 CTTCCCGTTATATGGCTATCTGGAG
69864458 CTTCCCGTTATA
1 CTTCCCGTTATA
69864470 CAGCCTGGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 22 0.69
25 10 0.31
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.36
Consensus pattern (25 bp):
CTTCCCGTTATATGGCTATCTGGAG
Found at i:69864456 original size:24 final size:24
Alignment explanation
Indices: 69864331--69864467 Score: 84
Period size: 26 Copynumber: 5.5 Consensus size: 24
69864321 CAACCCTCTC
* * *
69864331 GAGCTTCCTGCTATATGGCTCTTCG
1 GAGCTTCCCGTTA-ATGGCTCTTTG
* *
69864356 TGAGCTTCCTGATTAAAGGCTCTTTG
1 -GAGCTTCCCG-TTAATGGCTCTTTG
*
69864382 TGAGCTTCCCGATATAACTTG--C-TT-
1 -GAGCTTCCCG-T-TAA-TGGCTCTTTG
* * * *
69864406 GAACTTCCCGATATATGGCTATCTG
1 GAGCTTCCCGTTA-ATGGCTCTTTG
69864431 GAGCTTCCCGTTAATGGCTCTTTG
1 GAGCTTCCCGTTAATGGCTCTTTG
69864455 GAGCTTCCCGTTA
1 GAGCTTCCCGTTA
69864468 TACAGCCTGG
Statistics
Matches: 88, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
21 4 0.05
22 1 0.01
23 9 0.10
24 23 0.26
25 13 0.15
26 32 0.36
27 5 0.06
28 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.36
Consensus pattern (24 bp):
GAGCTTCCCGTTAATGGCTCTTTG
Found at i:69864488 original size:74 final size:74
Alignment explanation
Indices: 69864357--69864499 Score: 166
Period size: 74 Copynumber: 1.9 Consensus size: 74
69864347 GGCTCTTCGT
* * * *
69864357 GAGCTTCCTGATTAAAGGCTCTTTGTGAGCTTCCCGATATAACTTGCTTGAACTTCCCGATATAT
1 GAGCTTCCCGATTAAAGGCTCTTTGTGAGCTTCCCGATATAACCTGCATGAACTTCCCGATACAT
69864422 GGCTATCTG
66 GGCTATCTG
* * * *
69864431 GAGCTTCCCG-TTAATGGCTCTTTG-GAGCTTCCCGTTATACAGCCTGGAT-AAGCTTCCCGTTA
1 GAGCTTCCCGATTAAAGGCTCTTTGTGAGCTTCCCGATATA-A-CCTGCATGAA-CTTCCCGATA
69864493 CATGGCT
63 CATGGCT
69864500 CCCATGAGCT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
72 14 0.24
73 16 0.28
74 28 0.48
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.34
Consensus pattern (74 bp):
GAGCTTCCCGATTAAAGGCTCTTTGTGAGCTTCCCGATATAACCTGCATGAACTTCCCGATACAT
GGCTATCTG
Found at i:69870000 original size:9 final size:9
Alignment explanation
Indices: 69869982--69870017 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
69869972 TTCTGGTTAG
*
69869982 TGTTTAAAT
1 TGTTTTAAT
69869991 TGTTTTAAT
1 TGTTTTAAT
*
69870000 TTTTTTAAT
1 TGTTTTAAT
69870009 TGTTTTAAT
1 TGTTTTAAT
69870018 GGTGGGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (9 bp):
TGTTTTAAT
Found at i:69870083 original size:18 final size:17
Alignment explanation
Indices: 69870051--69870088 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
69870041 CTAAACATTG
69870051 TTTTTTATTTTAATT-A
1 TTTTTTATTTTAATTCA
69870067 TTTTTTAATTTTAAATTCA
1 TTTTTT-ATTTT-AATTCA
69870086 TTT
1 TTT
69870089 GCTGACATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.32
17 5 0.26
18 4 0.21
19 4 0.21
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTATTTTAATTCA
Found at i:69871148 original size:29 final size:31
Alignment explanation
Indices: 69871115--69871184 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
69871105 TAAATTTAAT
*
69871115 ATTCATGTATCAAA-T-CATA-TAAAGTCAAA
1 ATTCATGTATCAAATTGAATACTAAA-TCAAA
* *
69871144 ATTCATATATCAAATTGAATACTAAATCATA
1 ATTCATGTATCAAATTGAATACTAAATCAAA
69871175 ATTCATGTAT
1 ATTCATGTAT
69871185 AACTCTTAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
29 13 0.38
30 1 0.03
31 16 0.47
32 4 0.12
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.36
Consensus pattern (31 bp):
ATTCATGTATCAAATTGAATACTAAATCAAA
Found at i:69872351 original size:13 final size:14
Alignment explanation
Indices: 69872322--69872355 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
69872312 TAAAAAATAA
69872322 TTTAAATTTTTGATT
1 TTTAAATTTTT-ATT
69872337 TTTAAATTTTT-TT
1 TTTAAATTTTTATT
69872350 TTTAAA
1 TTTAAA
69872356 CTTAGTTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.42
15 11 0.58
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (14 bp):
TTTAAATTTTTATT
Found at i:69878139 original size:18 final size:18
Alignment explanation
Indices: 69878118--69878184 Score: 54
Period size: 20 Copynumber: 3.8 Consensus size: 18
69878108 TATTGATGAA
69878118 TATTTTATATTTAAAATT
1 TATTTTATATTTAAAATT
69878136 TA-TTTA-ATTT--AATT
1 TATTTTATATTTAAAATT
**
69878150 T-TTTTATATTTATAAAAA
1 TATTTTATATTTA-AAATT
69878168 TATTTTTATATATTAAA
1 TA-TTTTATAT-TTAAA
69878185 TGCTTTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
14 9 0.23
15 4 0.10
16 4 0.10
17 4 0.10
18 5 0.13
20 10 0.26
21 3 0.08
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTTTATATTTAAAATT
Found at i:69881387 original size:16 final size:17
Alignment explanation
Indices: 69881357--69881389 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
69881347 GTGGTTTCTG
*
69881357 ATATGATACATACATAT
1 ATATGATACACACATAT
69881374 ATAT-ATACACACATAT
1 ATATGATACACACATAT
69881390 GCACATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.48, C:0.15, G:0.03, T:0.33
Consensus pattern (17 bp):
ATATGATACACACATAT
Found at i:69882561 original size:30 final size:30
Alignment explanation
Indices: 69882525--69882584 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
69882515 CGCACAAATT
* *
69882525 ATTATCTTCATCAGTTGTATATATTAATAA
1 ATTATCTCCATAAGTTGTATATATTAATAA
69882555 ATTATCTCCATAAGTTGTATATATTAATAA
1 ATTATCTCCATAAGTTGTATATATTAATAA
69882585 TGTTGTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (30 bp):
ATTATCTCCATAAGTTGTATATATTAATAA
Found at i:69883809 original size:49 final size:49
Alignment explanation
Indices: 69883754--69883853 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
69883744 ATGTGTATTT
*
69883754 ATAATTTTTAGTACATTAATAAATGTTATATATAAGTAAATATATCTCA
1 ATAATTTTTAGTACATTAATAAATGTTATATACAAGTAAATATATCTCA
*
69883803 ATAATTTTTAGTATATTAATAAATGTTATATACAAGTAAATATATCTCA
1 ATAATTTTTAGTACATTAATAAATGTTATATACAAGTAAATATATCTCA
69883852 AT
1 AT
69883854 TATAATATAA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (49 bp):
ATAATTTTTAGTACATTAATAAATGTTATATACAAGTAAATATATCTCA
Found at i:69884031 original size:29 final size:29
Alignment explanation
Indices: 69883961--69884033 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
69883951 GTACTTTCAT
69883961 AAAATGTCTAATGTGGTAACTATACTTTG
1 AAAATGTCTAATGTGGTAACTATACTTTG
* *
69883990 AAAATATCCAATGTGGT-ACTTATACTTTG
1 AAAATGTCTAATGTGGTAAC-TATACTTTG
*
69884019 AAAATGTTTAATGTG
1 AAAATGTCTAATGTG
69884034 ATAGTTGAAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 2 0.05
29 36 0.95
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (29 bp):
AAAATGTCTAATGTGGTAACTATACTTTG
Found at i:69884925 original size:26 final size:25
Alignment explanation
Indices: 69884896--69884951 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
69884886 CATCTGTAAA
* *
69884896 ATTTTATTGTTTTATCTATTTTTTTT
1 ATTTTATTGTTTTATC-AGTTTTTAT
* *
69884922 ATTTTGTTGTTTTTTCAGTTTTTAT
1 ATTTTATTGTTTTATCAGTTTTTAT
69884947 ATTTT
1 ATTTT
69884952 GACTTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 12 0.46
26 14 0.54
ACGTcount: A:0.14, C:0.04, G:0.07, T:0.75
Consensus pattern (25 bp):
ATTTTATTGTTTTATCAGTTTTTAT
Found at i:69885056 original size:32 final size:32
Alignment explanation
Indices: 69885020--69885081 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
69885010 CATGTTTTTT
69885020 ATGTATGAGGTTCATTTCTAATGTCAAATTTG
1 ATGTATGAGGTTCATTTCTAATGTCAAATTTG
*
69885052 ATGTATGAGGTTCATTTCTGATGTCAAATT
1 ATGTATGAGGTTCATTTCTAATGTCAAATT
69885082 GGTGACAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.44
Consensus pattern (32 bp):
ATGTATGAGGTTCATTTCTAATGTCAAATTTG
Found at i:69890020 original size:78 final size:78
Alignment explanation
Indices: 69889891--69890048 Score: 282
Period size: 78 Copynumber: 2.0 Consensus size: 78
69889881 TCTTTTAGCT
*
69889891 CCGAAGAGTCAGTAAATATTTTTTGAAGTGTCACTTCATAGAGCTTTTATACTGTTTACATGGTG
1 CCGAAGAGTCAGTAAATATTTTTCGAAGTGTCACTTCATAGAGCTTTTATACTGTTTACATGGTG
69889956 TCACT-CGTAAGAG
66 TCACTCCG-AAGAG
*
69889969 CCGAAGAGTCAGTAAATATTTTTCGAGGTGTCACTTCATAGAGCTTTTATACTGTTTACATGGTG
1 CCGAAGAGTCAGTAAATATTTTTCGAAGTGTCACTTCATAGAGCTTTTATACTGTTTACATGGTG
69890034 TCACTCCGAAGAG
66 TCACTCCGAAGAG
69890047 CC
1 CC
69890049 TGTAAATTAT
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
78 75 0.97
79 2 0.03
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (78 bp):
CCGAAGAGTCAGTAAATATTTTTCGAAGTGTCACTTCATAGAGCTTTTATACTGTTTACATGGTG
TCACTCCGAAGAG
Found at i:69900312 original size:50 final size:50
Alignment explanation
Indices: 69900237--69900339 Score: 188
Period size: 50 Copynumber: 2.1 Consensus size: 50
69900227 CCCTGGTCAC
69900237 TAGAACTAAAAGTCCAACACTCTACCAATAGGCAGCATGACCATTTACCT
1 TAGAACTAAAAGTCCAACACTCTACCAATAGGCAGCATGACCATTTACCT
* *
69900287 TAGAACTAAAAGTCCAACACTCTACCAATAGGCAGCATGACTATTTGCCT
1 TAGAACTAAAAGTCCAACACTCTACCAATAGGCAGCATGACCATTTACCT
69900337 TAG
1 TAG
69900340 GAGGAGATTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (50 bp):
TAGAACTAAAAGTCCAACACTCTACCAATAGGCAGCATGACCATTTACCT
Found at i:69901002 original size:19 final size:18
Alignment explanation
Indices: 69900978--69901021 Score: 70
Period size: 19 Copynumber: 2.4 Consensus size: 18
69900968 AATATGAATA
*
69900978 AAATTTATCTTCCTAAAT
1 AAATTTATCTACCTAAAT
69900996 AAGATTTATCTACCTAAAT
1 AA-ATTTATCTACCTAAAT
69901015 AAATTTA
1 AAATTTA
69901022 AAATATATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (18 bp):
AAATTTATCTACCTAAAT
Found at i:69901817 original size:125 final size:125
Alignment explanation
Indices: 69901595--69901842 Score: 478
Period size: 125 Copynumber: 2.0 Consensus size: 125
69901585 TATCTTAGAA
69901595 TTCGAAACACTGCTTCTTCATATTCCTCCATTGGAGAGTGCATAAATTGACTCACTAAGCTCACT
1 TTCGAAACACTGCTTCTTCATATTCCTCCATTGGAGAGTGCATAAATTGACTCACTAAGCTCACT
69901660 GCAAAAGCTATGTCTGGCATTGTATGTGATAAGTAAATTAACTTACCAACTAATCTTTAG
66 GCAAAAGCTATGTCTGGCATTGTATGTGATAAGTAAATTAACTTACCAACTAATCTTTAG
* *
69901720 TTCGAAACATTGCTTCTTCATATTCCTTCATTGGAGAGTGCATAAATTGACTCACTAAGCTCACT
1 TTCGAAACACTGCTTCTTCATATTCCTCCATTGGAGAGTGCATAAATTGACTCACTAAGCTCACT
69901785 GCAAAAGCTATGTCTGGCATTGTATGTGATAAGTAAATTAACTTACCAACTAATCTTT
66 GCAAAAGCTATGTCTGGCATTGTATGTGATAAGTAAATTAACTTACCAACTAATCTTT
69901843 GGTACTGCCC
Statistics
Matches: 121, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
125 121 1.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (125 bp):
TTCGAAACACTGCTTCTTCATATTCCTCCATTGGAGAGTGCATAAATTGACTCACTAAGCTCACT
GCAAAAGCTATGTCTGGCATTGTATGTGATAAGTAAATTAACTTACCAACTAATCTTTAG
Found at i:69904053 original size:33 final size:33
Alignment explanation
Indices: 69904016--69904138 Score: 228
Period size: 33 Copynumber: 3.7 Consensus size: 33
69904006 TCTGTTTCAA
69904016 GTTGCTGGACAGGAGCTGGAATGTGAGTGTTTG
1 GTTGCTGGACAGGAGCTGGAATGTGAGTGTTTG
*
69904049 GTTGCTGGACGGGAGCTGGAATGTGAGTGTTTG
1 GTTGCTGGACAGGAGCTGGAATGTGAGTGTTTG
69904082 GTTGCTGGACAGGAGCTGGAATGTGAGTGTTTG
1 GTTGCTGGACAGGAGCTGGAATGTGAGTGTTTG
*
69904115 GTTGCTGGACAGTAGCTGGAATGT
1 GTTGCTGGACAGGAGCTGGAATGT
69904139 CAAGAAGAAA
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 87 1.00
ACGTcount: A:0.18, C:0.10, G:0.42, T:0.30
Consensus pattern (33 bp):
GTTGCTGGACAGGAGCTGGAATGTGAGTGTTTG
Found at i:69907410 original size:33 final size:33
Alignment explanation
Indices: 69907368--69907434 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
69907358 CATAGCCAAC
69907368 AAAGACACATTTTGTTGCTCTAGGATCTAGTTT
1 AAAGACACATTTTGTTGCTCTAGGATCTAGTTT
69907401 AAAGACACATTTTGTTGCTCTAGGATCTAGTTT
1 AAAGACACATTTTGTTGCTCTAGGATCTAGTTT
69907434 A
1 A
69907435 CCTTGGATGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (33 bp):
AAAGACACATTTTGTTGCTCTAGGATCTAGTTT
Found at i:69907625 original size:69 final size:69
Alignment explanation
Indices: 69907514--69907652 Score: 278
Period size: 69 Copynumber: 2.0 Consensus size: 69
69907504 GAGTTAGGAA
69907514 AGTTATCTTTAAAGAGACGAAAAGGGGTTTTATAGTTTAGAGTTTTACTGGGCATTCTATTAATA
1 AGTTATCTTTAAAGAGACGAAAAGGGGTTTTATAGTTTAGAGTTTTACTGGGCATTCTATTAATA
69907579 AGAT
66 AGAT
69907583 AGTTATCTTTAAAGAGACGAAAAGGGGTTTTATAGTTTAGAGTTTTACTGGGCATTCTATTAATA
1 AGTTATCTTTAAAGAGACGAAAAGGGGTTTTATAGTTTAGAGTTTTACTGGGCATTCTATTAATA
69907648 AGAT
66 AGAT
69907652 A
1 A
69907653 TATAGTTGTT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (69 bp):
AGTTATCTTTAAAGAGACGAAAAGGGGTTTTATAGTTTAGAGTTTTACTGGGCATTCTATTAATA
AGAT
Found at i:69909248 original size:42 final size:42
Alignment explanation
Indices: 69909189--69909272 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
69909179 AATCCTAAAT
69909189 GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
1 GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
* *
69909231 GGGAAAATAGTTCCCTTATTCTAATAAACTATTAAAAGATAA
1 GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
69909273 AATAAAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (42 bp):
GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
Found at i:69909336 original size:19 final size:19
Alignment explanation
Indices: 69909300--69909344 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
69909290 AATATGAATA
*
69909300 AAATTTATCTTTCCTAAAT
1 AAATTTATCTTACCTAAAT
69909319 AAGATTTATC-TACCTAAAT
1 AA-ATTTATCTTACCTAAAT
69909338 AAATTTA
1 AAATTTA
69909345 AAATATATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 5 0.21
19 12 0.50
20 7 0.29
ACGTcount: A:0.42, C:0.13, G:0.02, T:0.42
Consensus pattern (19 bp):
AAATTTATCTTACCTAAAT
Found at i:69912421 original size:2 final size:2
Alignment explanation
Indices: 69912416--69912440 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
69912406 TTTTTTGTTT
69912416 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
69912441 TGGGGGGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:69913446 original size:13 final size:13
Alignment explanation
Indices: 69913428--69913465 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
69913418 AAGCACAGCA
69913428 AATCTGTTGATGC
1 AATCTGTTGATGC
*
69913441 AATCTGTAGATG-
1 AATCTGTTGATGC
*
69913453 AAGCTGTTGATGC
1 AATCTGTTGATGC
69913466 GGCATCTCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (13 bp):
AATCTGTTGATGC
Found at i:69926148 original size:40 final size:40
Alignment explanation
Indices: 69926070--69926250 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
69926060 ACCCAAGTAT
* *
69926070 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
69926109 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
**
69926149 CTTCGGGACTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
69926189 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
69926229 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
69926251 CATCCGAATA
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 11 0.08
40 118 0.91
41 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:69937265 original size:73 final size:74
Alignment explanation
Indices: 69937023--69937402 Score: 330
Period size: 76 Copynumber: 5.1 Consensus size: 74
69937013 TCTTGGTGAA
* * ** * * *
69937023 CAAATCTTCATCAATTTATGTGACTAGTGCTGGGCACATCATTATCTTCGTTAGTTTATCCAACT
1 CAAATCTTCGTCAGTTTAACTGACTAGTGCTGGGCACATCATTATATTCGTCA--TTATCCGACT
* *
69937088 AGCACTGGGCA
64 AGCGCTGGGCG
* * * * ** * * * * *
69937099 CAAATCTTTGTCAATTTACCTTACTAGTATTGGGAATATCATTATCTTCGTTGATTTATCTGACT
1 CAAATCTTCGTCAGTTTAACTGACTAGTGCTGGGCACATCATTATATTCG-TCA-TTATCCGACT
* *
69937164 AGCGTTGGGCA
64 AGCGCTGGGCG
* * *
69937175 CAAATCTTCGTCAGTTTAACTGACTAGAGCTGGGCACATTATTATATCCGTCA-TATCCGACTAG
1 CAAATCTTCGTCAGTTTAACTGACTAGTGCTGGGCACATCATTATATTCGTCATTATCCGACTAG
*
69937239 CGCTGGGTG
66 CGCTGGGCG
** * * * * *
69937248 CAAATCTTCACCGGTTTATCTGACTAGTGTTGGGCACATCATTTTATTCGTCGGATTATCTGACT
1 CAAATCTTCGTCAGTTTAACTGACTAGTGCTGGGCACATCATTATATTCGTC--ATTATCCGACT
*
69937313 AGCGCTGGGCC
64 AGCGCTGGGCG
* * * * * *
69937324 CAAATCTTCGTTAGTTTAACTAACTAGTGCTAGGCACAACCTCTATATTTGTCATTATCCGACTA
1 CAAATCTTCGTCAGTTTAACTGACTAGTGCTGGGCACATCAT-TATATTCGTCATTATCCGACTA
69937389 GCGCTGGGCG
65 GCGCTGGGCG
69937399 CAAA
1 CAAA
69937403 ACTTATTTAT
Statistics
Matches: 242, Mismatches: 57, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
73 59 0.24
75 27 0.11
76 146 0.60
77 10 0.04
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (74 bp):
CAAATCTTCGTCAGTTTAACTGACTAGTGCTGGGCACATCATTATATTCGTCATTATCCGACTAG
CGCTGGGCG
Found at i:69937298 original size:149 final size:151
Alignment explanation
Indices: 69937121--69937402 Score: 372
Period size: 149 Copynumber: 1.9 Consensus size: 151
69937111 AATTTACCTT
* * * *
69937121 ACTAGTATTGGGAATATCATTATCTTCGT-TGATTTATCTGACTAGCGTTGGGCACAAATCTTCG
1 ACTAGTATTGGGAACATCATTATATTCGTCGGA-TTATCTGACTAGCGCTGGGCACAAATCTTCG
* * ** *
69937185 TCAGTTTAACTGACTAGAGCTGGGCACATTAT-TATATCCGTCA-TATCCGACTAGCGCTGGGTG
65 TCAGTTTAACTAACTAGAGCTAGGCACAACATCTATATCCGTCATTATCCGACTAGCGCTGGGCG
69937248 CAAATCTTCACCGGTTTATCTG
130 CAAATCTTCACCGGTTTATCTG
* * * *
69937270 ACTAGTGTTGGGCACATCATTTTATTCGTCGGATTATCTGACTAGCGCTGGGCCCAAATCTTCGT
1 ACTAGTATTGGGAACATCATTATATTCGTCGGATTATCTGACTAGCGCTGGGCACAAATCTTCGT
* * * **
69937335 TAGTTTAACTAACTAGTGCTAGGCACAACCTCTATATTTGTCATTATCCGACTAGCGCTGGGCGC
66 CAGTTTAACTAACTAGAGCTAGGCACAACATCTATATCCGTCATTATCCGACTAGCGCTGGGCGC
69937400 AAA
131 AAA
69937403 ACTTATTTAT
Statistics
Matches: 112, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
149 78 0.70
150 11 0.10
151 23 0.21
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (151 bp):
ACTAGTATTGGGAACATCATTATATTCGTCGGATTATCTGACTAGCGCTGGGCACAAATCTTCGT
CAGTTTAACTAACTAGAGCTAGGCACAACATCTATATCCGTCATTATCCGACTAGCGCTGGGCGC
AAATCTTCACCGGTTTATCTG
Found at i:69941588 original size:17 final size:17
Alignment explanation
Indices: 69941563--69941595 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
69941553 ATATTTTTAT
69941563 TTAAATATAATTATTAA
1 TTAAATATAATTATTAA
*
69941580 TTAATTATAATTATTA
1 TTAAATATAATTATTA
69941596 TAAATAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTAAATATAATTATTAA
Found at i:69941609 original size:20 final size:20
Alignment explanation
Indices: 69941572--69941614 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
69941562 TTTAAATATA
* * * *
69941572 ATTATTAATTAATTATAATT
1 ATTATAAATAAATAATAACT
69941592 ATTATAAATAAATAATAACT
1 ATTATAAATAAATAATAACT
69941612 ATT
1 ATT
69941615 GGAATTAGAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTATAAATAAATAATAACT
Found at i:69941699 original size:10 final size:10
Alignment explanation
Indices: 69941681--69941718 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
69941671 AGAGTTTTAG
69941681 TATTTAATTA
1 TATTTAATTA
*
69941691 TAATTAATTA
1 TATTTAATTA
69941701 TTATTTAATTA
1 -TATTTAATTA
69941712 TATTTAA
1 TATTTAA
69941719 ATAAAGTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
TATTTAATTA
Found at i:69941908 original size:7 final size:8
Alignment explanation
Indices: 69941885--69941909 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
69941875 TATAATGAAG
69941885 TTAATTTT
1 TTAATTTT
69941893 TTAATTTT
1 TTAATTTT
69941901 TTAATTTT
1 TTAATTTT
69941909 T
1 T
69941910 CCAAAGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTAATTTT
Found at i:69942724 original size:26 final size:26
Alignment explanation
Indices: 69942695--69942762 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
69942685 TTAAAAAAAG
**
69942695 TTTAAAAATAAT-TCTTTTATAAATTT
1 TTTAAAAATAATATAATTT-TAAATTT
69942721 TTTAAAAA-AATATAATTTTAAATTT
1 TTTAAAAATAATATAATTTTAAATTT
* *
69942746 TTAAAAAATAAAATAAT
1 TTTAAAAATAATATAAT
69942763 ATATAAAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
25 17 0.47
26 19 0.53
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (26 bp):
TTTAAAAATAATATAATTTTAAATTT
Found at i:69943052 original size:21 final size:22
Alignment explanation
Indices: 69943010--69943056 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
69943000 TTTTTCTAGA
*
69943010 TTATATATATATTTTTGAATTTT
1 TTATATATATATTTCT-AATTTT
*
69943033 TTATATATTTATTTCT-ATTTT
1 TTATATATATATTTCTAATTTT
69943054 TTA
1 TTA
69943057 ATGTGTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 8 0.36
23 14 0.64
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (22 bp):
TTATATATATATTTCTAATTTT
Found at i:69952583 original size:13 final size:14
Alignment explanation
Indices: 69952557--69952586 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
69952547 CTGAAAAATG
69952557 TATTAGAAAATATT
1 TATTAGAAAATATT
69952571 TATTA-AAAATATT
1 TATTAGAAAATATT
69952584 TAT
1 TAT
69952587 GAAGTTAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
TATTAGAAAATATT
Found at i:69953886 original size:51 final size:51
Alignment explanation
Indices: 69953789--69953891 Score: 136
Period size: 51 Copynumber: 2.0 Consensus size: 51
69953779 AGAACTAAGT
* * * *
69953789 TATCCGGATGAAATATGAAGCTCTTGTTGAAACTAGAGCAATAAAGTAATA
1 TATCCGGATGAAATATAAAGCTCTTGATGAAACTAGAACAACAAAGTAATA
* *
69953840 TATCCGGATGAAATATAAAGTTCTTGATGAAGGC-AGAACAACAAAGTAATA
1 TATCCGGATGAAATATAAAGCTCTTGATGAA-ACTAGAACAACAAAGTAATA
69953891 T
1 T
69953892 TTCTGGATAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
51 44 0.98
52 1 0.02
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.26
Consensus pattern (51 bp):
TATCCGGATGAAATATAAAGCTCTTGATGAAACTAGAACAACAAAGTAATA
Found at i:69954249 original size:15 final size:15
Alignment explanation
Indices: 69954227--69954273 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
69954217 ATCAAATTTT
69954227 TATTGATTGAAATCA
1 TATTGATTGAAATCA
* * *
69954242 TTTTGATTGAATTTA
1 TATTGATTGAAATCA
69954257 TATTGATTGAAAT-A
1 TATTGATTGAAATCA
69954271 TAT
1 TAT
69954274 ATATATGATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 4 0.15
15 23 0.85
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (15 bp):
TATTGATTGAAATCA
Found at i:69954925 original size:18 final size:19
Alignment explanation
Indices: 69954904--69954944 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
69954894 AATGAAATGA
69954904 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
69954922 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
69954941 GAAA
1 GAAA
69954945 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:69964750 original size:47 final size:47
Alignment explanation
Indices: 69964699--69965312 Score: 844
Period size: 47 Copynumber: 13.1 Consensus size: 47
69964689 GATTTTATGA
*
69964699 GATGAATGTGAACATGCACATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
69964746 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * * *
69964793 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAAATTT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCC-AATGT
69964841 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
69964888 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
69964935 GATGAATGTGAACATGCATA-GTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
69964981 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
69965028 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
69965075 GATAAACGTGGAA-GTGTATATCTGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* *
69965122 GATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGACCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
* * * * *
69965169 GATAAACGTGGAA-GTGTATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGT-GAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
*
69965216 GATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
**
69965263 GATGAATGTGAACATGCATATGTGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
69965310 GAT
1 GAT
69965313 AAACGTGGAA
Statistics
Matches: 496, Mismatches: 59, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
46 49 0.10
47 398 0.80
48 49 0.10
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGT
Found at i:69965358 original size:94 final size:94
Alignment explanation
Indices: 69964721--69965312 Score: 1044
Period size: 94 Copynumber: 6.3 Consensus size: 94
69964711 CATGCACATG
69964721 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
69964786 CCAATGTGATAAACGTGGAAGTGTATATA
66 CCAATGTGATAAACGTGGAAGTGTATATA
*
69964815 TGTGATAAGGCCGAATGGCCAAATTTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATG
1 TGTGATAAGGCCGAATGGCC-AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATG
69964880 GCCAATGTGATAAACGTGGAAGTGTATATA
65 GCCAATGTGATAAACGTGGAAGTGTATATA
69964910 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATA-GTGTGATAAGGCCGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
69964974 CCAATGTGATAAACGTGGAAGTGTATATA
66 CCAATGTGATAAACGTGGAAGTGTATATA
69965003 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
*
69965068 CCAATGTGATAAACGTGGAAGTGTATATC
66 CCAATGTGATAAACGTGGAAGTGTATATA
* *
69965097 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCTGAATGA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
69965162 CCAATGTGATAAACGTGGAAGTGTATATA
66 CCAATGTGATAAACGTGGAAGTGTATATA
*
69965191 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
* * * * *
69965256 CCAATGTGATGAATGT-GAACATGCATATG
66 CCAATGTGATAAACGTGGAA-GTGTATATA
**
69965285 TGTGATAAGGTAGAATGGCCAATGTGAT
1 TGTGATAAGGCCGAATGGCCAATGTGAT
69965313 AAACGTGGAA
Statistics
Matches: 479, Mismatches: 16, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
93 96 0.20
94 290 0.61
95 93 0.19
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (94 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGG
CCAATGTGATAAACGTGGAAGTGTATATA
Found at i:69969008 original size:39 final size:39
Alignment explanation
Indices: 69968965--69969090 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
69968955 GGACTTTAGC
* * * * *
69968965 CCGGACATATTTCCAGCACGTAGCCTGCAGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
69969004 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
69969043 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
69969082 CCGGATATA
1 CCGGATATA
69969091 CATCACTGAA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:69971103 original size:28 final size:28
Alignment explanation
Indices: 69971071--69971198 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
69971061 ATAGTAAGTC
*
69971071 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
69971099 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
69971128 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
69971156 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
69971185 CGCACACTTAGTGC
1 CGCACACTTAGTGC
69971199 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:69971161 original size:57 final size:57
Alignment explanation
Indices: 69971070--69971198 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
69971060 TATAGTAAGT
*
69971070 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
69971127 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
69971184 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
69971199 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:69986016 original size:136 final size:136
Alignment explanation
Indices: 69985770--69986038 Score: 466
Period size: 136 Copynumber: 2.0 Consensus size: 136
69985760 GCACTGCATT
*
69985770 ACTGGGTGAACCTATGAATAACCAAGAAAACTGTCAATCTTTCTGTTCAAAAGTTCTACCTGATT
1 ACTGGGTGAACCTATGAAGAACCAAGAAAACTGTCAATCTTTCTGTTCAAAAGTTCTACCTGATT
** * *
69985835 AGAGAGCATGGTGACTGAATCGACGTTAAAAATGCCGATTGTTTTCATTGGTGTTGTCCTCATAA
66 AGAGAGCATGGTGACTGAATCGACGTTAAAAACACCGACTATTTTCATTGGTGTTGTCCTCATAA
69985900 CTTACC
131 CTTACC
*
69985906 ACTGGGTGAACCTGTGAAGAACCAAGAAAACTGTCAATCTTTCTGTTCAAAAGTTCTACCTGATT
1 ACTGGGTGAACCTATGAAGAACCAAGAAAACTGTCAATCTTTCTGTTCAAAAGTTCTACCTGATT
* *
69985971 AGAGAGCATGGTGACTGAATCGACGTTAAAAACACCGACTATTTTCGTTGGTGTTGTCCTTATAA
66 AGAGAGCATGGTGACTGAATCGACGTTAAAAACACCGACTATTTTCATTGGTGTTGTCCTCATAA
69986036 CTT
131 CTT
69986039 GCCATTGATA
Statistics
Matches: 125, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
136 125 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (136 bp):
ACTGGGTGAACCTATGAAGAACCAAGAAAACTGTCAATCTTTCTGTTCAAAAGTTCTACCTGATT
AGAGAGCATGGTGACTGAATCGACGTTAAAAACACCGACTATTTTCATTGGTGTTGTCCTCATAA
CTTACC
Found at i:69988028 original size:13 final size:13
Alignment explanation
Indices: 69988010--69988034 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69988000 GCTCAGCAGG
69988010 GACACGCCCGTGT
1 GACACGCCCGTGT
69988023 GACACGCCCGTG
1 GACACGCCCGTG
69988035 CGCGATTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.32, T:0.12
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:69994085 original size:27 final size:27
Alignment explanation
Indices: 69994053--69994145 Score: 168
Period size: 27 Copynumber: 3.4 Consensus size: 27
69994043 TAGTTGAACT
69994053 ATGACAAAGTGATAAAGTGTGCCAAAC
1 ATGACAAAGTGATAAAGTGTGCCAAAC
69994080 ATGACAAAGTGATAAAGTGTGCCAAAC
1 ATGACAAAGTGATAAAGTGTGCCAAAC
*
69994107 ATGACAAAGTGATAAAGTGTGCCAAAT
1 ATGACAAAGTGATAAAGTGTGCCAAAC
*
69994134 ATGGCAAAGTGA
1 ATGACAAAGTGA
69994146 AGTGTGACAA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.44, C:0.13, G:0.24, T:0.19
Consensus pattern (27 bp):
ATGACAAAGTGATAAAGTGTGCCAAAC
Found at i:70001259 original size:27 final size:27
Alignment explanation
Indices: 70001217--70001278 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
70001207 TAGTTGAACT
*
70001217 ATGGCAAAGTGATAAAGTGTGCCAAAC
1 ATGGCAAACTGATAAAGTGTGCCAAAC
* *
70001244 ATGTCAAACTGATAAAGTGTGCCAAAT
1 ATGGCAAACTGATAAAGTGTGCCAAAC
70001271 ATGGCAAA
1 ATGGCAAA
70001279 GTGAAATGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.21
Consensus pattern (27 bp):
ATGGCAAACTGATAAAGTGTGCCAAAC
Found at i:70004799 original size:49 final size:47
Alignment explanation
Indices: 70004683--70004954 Score: 158
Period size: 48 Copynumber: 5.7 Consensus size: 47
70004673 AGGGTATAAT
** * *
70004683 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCAACAATCAA
** * *
70004730 GTAGATGCCATGTCCTAGACATGGTCTTACACTAACT-AACGGAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCAAC--AATC-AA
* * * *
70004779 GCCGATGCCATGTCCCAGACATGATCTTACACTAGCTCTCACATATCCAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTC-AACA-AT-CAA
* * * * * * ** * **
70004829 GCCGCTGCTATGTCCCAGATATGGTCTTATACTGACACCTCTATACGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCAACAAT-CAA
* * * * * * * *
70004877 GCTGATGCTATGTCTCAGGCATGGCCTTACACTAACACATC--TCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCAACAATC-AA
70004923 GCCGATG-CATGTCCCAGACAT-GTCTTACACTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTA
70004955 GCACACAAAT
Statistics
Matches: 174, Mismatches: 43, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
44 10 0.06
45 12 0.07
46 9 0.05
47 32 0.18
48 39 0.22
49 36 0.21
50 33 0.19
51 3 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAACTCAACAATCAA
Found at i:70009982 original size:17 final size:16
Alignment explanation
Indices: 70009956--70009988 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
70009946 TTTTAGCGCA
70009956 TTTGAATAAAAAAAAT
1 TTTGAATAAAAAAAAT
70009972 TTTGCAATAAAAAAAAT
1 TTTG-AATAAAAAAAAT
70009989 ATCAATATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (16 bp):
TTTGAATAAAAAAAAT
Found at i:70013797 original size:11 final size:11
Alignment explanation
Indices: 70013781--70013807 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
70013771 ATATTTTTTC
70013781 ATATATTATGT
1 ATATATTATGT
70013792 ATATATTATGT
1 ATATATTATGT
70013803 ATATA
1 ATATA
70013808 CTTTTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (11 bp):
ATATATTATGT
Found at i:70013955 original size:25 final size:24
Alignment explanation
Indices: 70013927--70013984 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
70013917 ATATTTATTG
*
70013927 TATTTTTACATATGTTATGTATATA
1 TATTTTTAC-TATATTATGTATATA
* *
70013952 TATTTAATACTATATTATTTATATA
1 TATTT-TTACTATATTATGTATATA
70013977 TATATTTT
1 TAT-TTTT
70013985 TTCATATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
25 22 0.81
26 5 0.19
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (24 bp):
TATTTTTACTATATTATGTATATA
Found at i:70014031 original size:28 final size:27
Alignment explanation
Indices: 70013941--70014034 Score: 84
Period size: 28 Copynumber: 3.4 Consensus size: 27
70013931 TTTACATATG
*
70013941 TTATGTATATA--TATTTAATACTATA
1 TTATGTATATATTTTTTTAATACTATA
* * * *
70013966 TTATTTATATATATATTTTTTCATATTATC
1 TTA--TGTATATAT-TTTTTTAATACTATA
*
70013996 TTACGTATATATTTTTTTAATAACTATA
1 TTATGTATATATTTTTTTAAT-ACTATA
70014024 TTATGTATATA
1 TTATGTATATA
70014035 CTATTACCAT
Statistics
Matches: 52, Mismatches: 11, Indels: 9
0.72 0.15 0.12
Matches are distributed among these distances:
25 3 0.06
27 15 0.29
28 21 0.40
30 13 0.25
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.56
Consensus pattern (27 bp):
TTATGTATATATTTTTTTAATACTATA
Found at i:70014227 original size:14 final size:14
Alignment explanation
Indices: 70014208--70014242 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
70014198 ATCATATGTG
*
70014208 TATATATATACTTT
1 TATATATATACTAT
*
70014222 TATATATATAGTAT
1 TATATATATACTAT
70014236 TATATAT
1 TATATAT
70014243 TATTATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.54
Consensus pattern (14 bp):
TATATATATACTAT
Found at i:70014228 original size:24 final size:23
Alignment explanation
Indices: 70014190--70014250 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 23
70014180 TTACCCCTTT
*
70014190 TATATTTTATCATATGT-GTATATA
1 TATATTTTAT-ATATATAGTAT-TA
70014214 TATACTTTTATATATATAGTATTA
1 TATA-TTTTATATATATAGTATTA
70014238 TATATTATTATAT
1 TATATT-TTATAT
70014251 TTATTATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 2 0.06
24 21 0.64
25 10 0.30
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (23 bp):
TATATTTTATATATATAGTATTA
Found at i:70014266 original size:12 final size:12
Alignment explanation
Indices: 70014240--70014270 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
70014230 TAGTATTATA
*
70014240 TATTATTATATT
1 TATTATTATACT
70014252 TATTATTATACT
1 TATTATTATACT
70014264 TATTATT
1 TATTATT
70014271 TTCGCTATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (12 bp):
TATTATTATACT
Found at i:70014267 original size:24 final size:24
Alignment explanation
Indices: 70014214--70014270 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 24
70014204 TGTGTATATA
70014214 TATACTT-TTA-TATATATAGTAT
1 TATACTTATTATTATATATAGTAT
* *
70014236 TATA--TATTATTATATTTATTAT
1 TATACTTATTATTATATATAGTAT
70014258 TATACTTATTATT
1 TATACTTATTATT
70014271 TTCGCTATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 1 0.03
21 3 0.10
22 18 0.62
24 7 0.24
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (24 bp):
TATACTTATTATTATATATAGTAT
Done.