Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 215 of 325
Found at i:70019948 original size:24 final size:24
Alignment explanation
Indices: 70019921--70019985 Score: 87
Period size: 25 Copynumber: 2.7 Consensus size: 24
70019911 CGAAAGAGTG
70019921 TCCCGTTATTAGCTCTTGTGAGCT
1 TCCCGTTATTAGCTCTTGTGAGCT
* *
70019945 TCCCGTTATATGGTTCTTGTGAGCT
1 TCCCGTTAT-TAGCTCTTGTGAGCT
*
70019970 TCCCATTA-TAGCTCTT
1 TCCCGTTATTAGCTCTT
70019986 CAGAGCATCC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 6 0.17
24 9 0.26
25 20 0.57
ACGTcount: A:0.14, C:0.25, G:0.18, T:0.43
Consensus pattern (24 bp):
TCCCGTTATTAGCTCTTGTGAGCT
Found at i:70020574 original size:25 final size:25
Alignment explanation
Indices: 70020515--70020564 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
70020505 ATTTCTTGGT
*
70020515 ATTAATATGAATTATGTAACTAACA
1 ATTAATATGAACTATGTAACTAACA
70020540 ATTAATATGAACTATGTAACTAACA
1 ATTAATATGAACTATGTAACTAACA
70020565 TGTTTGATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.34
Consensus pattern (25 bp):
ATTAATATGAACTATGTAACTAACA
Found at i:70021527 original size:20 final size:20
Alignment explanation
Indices: 70021502--70021540 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
70021492 TTATACCTAA
70021502 GAAAAATTTTGAAATTTCGT
1 GAAAAATTTTGAAATTTCGT
70021522 GAAAAATTTTGAAATTTCG
1 GAAAAATTTTGAAATTTCG
70021541 CAAAAATTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.38
Consensus pattern (20 bp):
GAAAAATTTTGAAATTTCGT
Found at i:70021545 original size:19 final size:20
Alignment explanation
Indices: 70021503--70021548 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
70021493 TATACCTAAG
*
70021503 AAAAATTTTGAAATTTCGTG
1 AAAAATTTTGAAATTTCGTC
70021523 AAAAATTTTGAAATTTCG-C
1 AAAAATTTTGAAATTTCGTC
70021542 AAAAATT
1 AAAAATT
70021549 CTCTGAGTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 7 0.28
20 18 0.72
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.37
Consensus pattern (20 bp):
AAAAATTTTGAAATTTCGTC
Found at i:70025661 original size:43 final size:43
Alignment explanation
Indices: 70025595--70025677 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 43
70025585 AAATCGTACA
** *
70025595 ATGCCAACTTCCCAGACCTGGTCTTACAT-GTAACCACATATCG
1 ATGCCAACTTCCCAGACAGGGTCTTAC-TCGTAAACACATATCG
70025638 ATGCC-ACTGTCCCAGACAGGGTCTTACTCGTAAACACATA
1 ATGCCAACT-TCCCAGACAGGGTCTTACTCGTAAACACATA
70025678 CCAGAATCAC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 4 0.11
43 31 0.89
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (43 bp):
ATGCCAACTTCCCAGACAGGGTCTTACTCGTAAACACATATCG
Found at i:70029424 original size:29 final size:27
Alignment explanation
Indices: 70029380--70029437 Score: 98
Period size: 29 Copynumber: 2.1 Consensus size: 27
70029370 ATTGCATGAC
70029380 TACGAATTGTTTGGGCCTAATGGGCCA
1 TACGAATTGTTTGGGCCTAATGGGCCA
70029407 TACGAATATGATTTGGGCCTAATGGGCCA
1 TACGAAT-TG-TTTGGGCCTAATGGGCCA
70029436 TA
1 TA
70029438 TGAAAGAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 7 0.24
28 2 0.07
29 20 0.69
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (27 bp):
TACGAATTGTTTGGGCCTAATGGGCCA
Found at i:70029448 original size:29 final size:29
Alignment explanation
Indices: 70029389--70029467 Score: 90
Period size: 29 Copynumber: 2.8 Consensus size: 29
70029379 CTACGAATTG
* *
70029389 TTTGGGCCTAATGGGCCATACGAATATGA
1 TTTGGGCCTAATGGGCCATATGAATAAGA
70029418 TTTGGGCCTAATGGGCCATATGAA-AGAGA
1 TTTGGGCCTAATGGGCCATATGAATA-AGA
* * *
70029447 -TTGAGCCTAGTGGGTCATATG
1 TTTGGGCCTAATGGGCCATATG
70029468 CATGTATGCG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
28 19 0.43
29 25 0.57
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (29 bp):
TTTGGGCCTAATGGGCCATATGAATAAGA
Found at i:70050945 original size:13 final size:14
Alignment explanation
Indices: 70050927--70050966 Score: 66
Period size: 13 Copynumber: 3.0 Consensus size: 14
70050917 TAACATATAT
70050927 AGATAT-CAGAATC
1 AGATATACAGAATC
70050940 AGATATACAGAA-C
1 AGATATACAGAATC
70050953 AGATATACAGAATC
1 AGATATACAGAATC
70050967 CTACCCCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 19 0.76
14 6 0.24
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.20
Consensus pattern (14 bp):
AGATATACAGAATC
Found at i:70052679 original size:16 final size:16
Alignment explanation
Indices: 70052654--70052696 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
70052644 GTAGATCAGC
70052654 AAAAGTCGAAATGCGG
1 AAAAGTCGAAATGCGG
* *
70052670 AAAAGCCGAAATGCTG
1 AAAAGTCGAAATGCGG
70052686 AAAAGTCGAAA
1 AAAAGTCGAAA
70052697 GTTTGGCTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.26, T:0.12
Consensus pattern (16 bp):
AAAAGTCGAAATGCGG
Found at i:70053016 original size:28 final size:29
Alignment explanation
Indices: 70052905--70053024 Score: 134
Period size: 29 Copynumber: 4.2 Consensus size: 29
70052895 GAAAGCATGT
* * *
70052905 ATATGAATGTGATTTGGGCCTAATAGGTC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
* * **
70052934 GTACGAATTTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
** *
70052963 ATACAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
*
70052992 ATATGAATGAGA-TTGGGCTTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
70053020 ATATG
1 ATATG
70053025 CATCTATGTA
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 20 0.25
29 59 0.75
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCTAATGGGCC
Found at i:70061433 original size:30 final size:30
Alignment explanation
Indices: 70061397--70061488 Score: 175
Period size: 30 Copynumber: 3.1 Consensus size: 30
70061387 AATTGAAAGT
70061397 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
70061427 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
*
70061457 TTTGGCACTAAGTGTTCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAAACTAGC
70061487 TT
1 TT
70061489 CGGCTACTTG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (30 bp):
TTTGGCACTAAGTGTGCGATTTAAACTAGC
Found at i:70067604 original size:42 final size:42
Alignment explanation
Indices: 70067474--70067609 Score: 128
Period size: 42 Copynumber: 3.1 Consensus size: 42
70067464 CATGGGCCCA
* *
70067474 CATATCAATGCCATATCCCAGAAATGGTCTTATACGAAGTCT
1 CATATCAATGCCATATCCCAGAAATGGTCTTACACGAAATCT
* * * * *
70067516 CATGTCGGTGCCGATGCCATGTCCCAGACATGGTCTTACACAAAATCT
1 CA--T--AT--CAATGCCATATCCCAGAAATGGTCTTACACGAAATCT
* * *
70067564 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCA
1 CATATCAATGCCATATCCCAGAAATGGTCTTACACGAAATCT
70067606 CATA
1 CATA
70067610 CCGATGCCGA
Statistics
Matches: 74, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
42 37 0.50
44 2 0.03
46 2 0.03
48 33 0.45
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGAAATGGTCTTACACGAAATCT
Found at i:70067618 original size:90 final size:89
Alignment explanation
Indices: 70067474--70067645 Score: 236
Period size: 90 Copynumber: 1.9 Consensus size: 89
70067464 CATGGGCCCA
* * * ** * *
70067474 CATATCAATGCCATATCCCAGAAATGGTCTTATACGAAGTCTCATGTCGGTGCCGATGCCATGTC
1 CATATCAATGCCATATCCCAGAAATGGTCTTACACGAAATCACATACCGATGCCGATGCCATAT-
70067539 CCAGACATGGTCTTACACAAAATCT
65 CCAGACATGGTCTTACACAAAATCT
* *
70067564 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCGATGCCGATGCCATATC
1 CATATCAATGCCATATCCCAGAAATGGTCTTACACGAAATCACATACCGATGCCGATGCCATATC
* *
70067629 TAGATATGGTCTTACAC
66 CAGACATGGTCTTACAC
70067646 TAACACATAT
Statistics
Matches: 71, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
89 16 0.23
90 55 0.77
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (89 bp):
CATATCAATGCCATATCCCAGAAATGGTCTTACACGAAATCACATACCGATGCCGATGCCATATC
CAGACATGGTCTTACACAAAATCT
Found at i:70067627 original size:48 final size:46
Alignment explanation
Indices: 70067481--70067645 Score: 160
Period size: 48 Copynumber: 3.6 Consensus size: 46
70067471 CCACATATCA
* * * *
70067481 ATGCCATATCCCAGAAATGGTCTTATACGAAGTCTCATGTCGGTGCCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA--TCGATGCCG
* * * *
70067529 ATGCCATGTCCCAGACATGGTCTTACACAAAATCTCAT--AT--CA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATCGATGCCG
* *
70067571 ATGCCATATCCCAGATATGGTCTTACATGAAATCACATACCGATGCCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT--CGATGCCG
*
70067619 ATGCCATAT-CTAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
70067646 TAACACATAT
Statistics
Matches: 96, Mismatches: 15, Indels: 13
0.77 0.12 0.10
Matches are distributed among these distances:
42 34 0.35
44 1 0.01
46 3 0.03
47 16 0.17
48 42 0.44
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (46 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATCGATGCCG
Found at i:70067668 original size:45 final size:47
Alignment explanation
Indices: 70067571--70067692 Score: 124
Period size: 45 Copynumber: 2.6 Consensus size: 47
70067561 TCTCATATCA
* * **
70067571 ATGCCATATCCCAGATATGGTCTTACA-TGAAATCACATACCGATGCCG
1 ATGCCATAT-CTAGATATGGTCTTACACT-AAATCACATACCAACACCG
*
70067619 ATGCCATATCTAGATATGGTCTTACACT-AA-CACATATCAACACCG
1 ATGCCATATCTAGATATGGTCTTACACTAAATCACATACCAACACCG
* * *
70067664 ATGCCATACCTCAGACATGGTCGTACACT
1 ATGCCATATCT-AGATATGGTCTTACACT
70067693 GGCTCTCACA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
45 21 0.33
46 17 0.27
47 16 0.25
48 10 0.16
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (47 bp):
ATGCCATATCTAGATATGGTCTTACACTAAATCACATACCAACACCG
Found at i:70067787 original size:49 final size:48
Alignment explanation
Indices: 70067654--70067779 Score: 157
Period size: 48 Copynumber: 2.6 Consensus size: 48
70067644 ACTAACACAT
* *
70067654 ATCAACACCGATGCCAT-ACCTCAGACATGGTCGTACACTGGCTCTCAC
1 ATCAACACCGATGCCATGTCC-CAGACATGGTCTTACACTGGCTCTCAC
**
70067702 ATCAACACCGATGTTATGTCCCAGACATGGTCTTACACTGGCTCTCATC
1 ATCAACACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-C
**
70067751 -TCAGATGCCGATGCCATGTCCCAGACATG
1 ATCA-ACACCGATGCCATGTCCCAGACATG
70067780 ATTTTACATA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 43 0.64
49 24 0.36
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (48 bp):
ATCAACACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAC
Found at i:70069142 original size:71 final size:71
Alignment explanation
Indices: 70069026--70069174 Score: 298
Period size: 71 Copynumber: 2.1 Consensus size: 71
70069016 CTCCCAAGCC
70069026 TGTAAAGATTTGAGGAAATCGACATCGGGAAGTGTATTCGTCCTAGGTGGTGGAGTCATAGTATG
1 TGTAAAGATTTGAGGAAATCGACATCGGGAAGTGTATTCGTCCTAGGTGGTGGAGTCATAGTATG
70069091 GAGAAG
66 GAGAAG
70069097 TGTAAAGATTTGAGGAAATCGACATCGGGAAGTGTATTCGTCCTAGGTGGTGGAGTCATAGTATG
1 TGTAAAGATTTGAGGAAATCGACATCGGGAAGTGTATTCGTCCTAGGTGGTGGAGTCATAGTATG
70069162 GAGAAG
66 GAGAAG
70069168 TGTAAAG
1 TGTAAAG
70069175 CAAACTTGCA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 78 1.00
ACGTcount: A:0.30, C:0.09, G:0.34, T:0.27
Consensus pattern (71 bp):
TGTAAAGATTTGAGGAAATCGACATCGGGAAGTGTATTCGTCCTAGGTGGTGGAGTCATAGTATG
GAGAAG
Found at i:70070896 original size:26 final size:26
Alignment explanation
Indices: 70070860--70070913 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
70070850 TTGATCAAGT
70070860 AAAATTAAATTAATCAAATTCATTAA
1 AAAATTAAATTAATCAAATTCATTAA
70070886 AAAATTAAATTAATCAAATTCATTAA
1 AAAATTAAATTAATCAAATTCATTAA
70070912 AA
1 AA
70070914 TTCATTTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.33
Consensus pattern (26 bp):
AAAATTAAATTAATCAAATTCATTAA
Found at i:70070910 original size:13 final size:13
Alignment explanation
Indices: 70070868--70070911 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
70070858 GTAAAATTAA
70070868 ATTAATCAAATTC
1 ATTAATCAAATTC
* *
70070881 ATTAA-AAAATTAA
1 ATTAATCAAATT-C
70070894 ATTAATCAAATTC
1 ATTAATCAAATTC
70070907 ATTAA
1 ATTAA
70070912 AATTCATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 5 0.20
13 15 0.60
14 5 0.20
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (13 bp):
ATTAATCAAATTC
Found at i:70073224 original size:20 final size:20
Alignment explanation
Indices: 70073196--70073240 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
70073186 TATCGATCTA
*
70073196 GTATCGATACT-TTTCTTAAG
1 GTATCGATA-TATTTCCTAAG
*
70073216 GTATTGATATATTTCCTAAG
1 GTATCGATATATTTCCTAAG
70073236 GTATC
1 GTATC
70073241 AATGTTCCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (20 bp):
GTATCGATATATTTCCTAAG
Found at i:70082785 original size:34 final size:35
Alignment explanation
Indices: 70082747--70082813 Score: 100
Period size: 36 Copynumber: 1.9 Consensus size: 35
70082737 TATTAAAAGT
70082747 TAAAAATTTA-AAAAATTAAAAAATATATATAATA
1 TAAAAATTTACAAAAATTAAAAAATATATATAATA
**
70082781 TAAAAATTTACTAAAAATTTTAAAATATATATA
1 TAAAAATTTAC-AAAAATTAAAAAATATATATA
70082814 TTAGAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 10 0.34
36 19 0.66
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (35 bp):
TAAAAATTTACAAAAATTAAAAAATATATATAATA
Found at i:70082822 original size:34 final size:35
Alignment explanation
Indices: 70082747--70082838 Score: 104
Period size: 34 Copynumber: 2.7 Consensus size: 35
70082737 TATTAAAAGT
**
70082747 TAAAAATTTA-AAAAATTAAAAAATATATATAATA
1 TAAAAATTTATAAAAATTTTAAAATATATATAATA
70082781 TAAAAATTTACTAAAAATTTTAAAATATATAT-AT-
1 TAAAAATTTA-TAAAAATTTTAAAATATATATAATA
*
70082815 TAGAAATTT-T-AAAATCTTTAAAAT
1 TAAAAATTTATAAAAAT-TTTAAAAT
70082839 TTTCTAAATC
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
31 5 0.10
32 9 0.17
34 18 0.35
35 2 0.04
36 18 0.35
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.38
Consensus pattern (35 bp):
TAAAAATTTATAAAAATTTTAAAATATATATAATA
Found at i:70083751 original size:9 final size:9
Alignment explanation
Indices: 70083723--70083842 Score: 65
Period size: 9 Copynumber: 13.4 Consensus size: 9
70083713 AATTACAATC
*
70083723 TTTTACAAT
1 TTTTATAAT
*
70083732 TTCTAATAAT
1 TT-TTATAAT
70083742 TTTTATAAT
1 TTTTATAAT
*
70083751 TTCTTACAAT
1 TT-TTATAAT
70083761 ATTTT-TACAT
1 -TTTTATA-AT
*
70083771 TTTT-TATT
1 TTTTATAAT
70083779 TTTTATAAT
1 TTTTATAAT
*
70083788 TTTTAAAAT
1 TTTTATAAT
* *
70083797 TTTTAAAAA
1 TTTTATAAT
*
70083806 TTCTA-ACAT
1 TTTTATA-AT
70083815 ATTTT-TAA-
1 -TTTTATAAT
70083823 TTTT-TAAT
1 TTTTATAAT
70083831 TTTTA-AAT
1 TTTTATAAT
70083839 TTTT
1 TTTT
70083843 TTTGTAATTT
Statistics
Matches: 89, Mismatches: 12, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
7 7 0.08
8 17 0.19
9 42 0.47
10 21 0.24
11 2 0.02
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTTATAAT
Found at i:70083751 original size:19 final size:19
Alignment explanation
Indices: 70083717--70083821 Score: 65
Period size: 19 Copynumber: 5.5 Consensus size: 19
70083707 AAAAAAAATT
*
70083717 ACAATCTTTTACAATTTCTA
1 ACAAT-TTTTATAATTTCTA
* *
70083737 ATAATTTTTATAATTTCTT
1 ACAATTTTTATAATTTCTA
70083756 ACAATATTTT-TACATTT-T-
1 ACAAT-TTTTATA-ATTTCTA
** * *
70083774 TTATTTTTTATAATTTTTA
1 ACAATTTTTATAATTTCTA
* *
70083793 A-AATTTTTAAAAATTCTA
1 ACAATTTTTATAATTTCTA
70083811 ACATATTTTTA
1 ACA-ATTTTTA
70083822 ATTTTTAATT
Statistics
Matches: 66, Mismatches: 12, Indels: 14
0.72 0.13 0.15
Matches are distributed among these distances:
17 8 0.12
18 19 0.29
19 20 0.30
20 19 0.29
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (19 bp):
ACAATTTTTATAATTTCTA
Found at i:70083798 original size:46 final size:44
Alignment explanation
Indices: 70083737--70083843 Score: 119
Period size: 43 Copynumber: 2.4 Consensus size: 44
70083727 ACAATTTCTA
* * * * *
70083737 ATAATTTTTATAATTTCTTACAATATTTTTACAT-TTTTTATTTTTT
1 ATAATTTTTAAAATTT-TTA-AAAATTCTAACATATTTTTA-ATTTT
70083783 ATAATTTTTAAAATTTTTAAAAATTCTAACATATTTTTAATTTT
1 ATAATTTTTAAAATTTTTAAAAATTCTAACATATTTTTAATTTT
*
70083827 -TAATTTTTAAATTTTTT
1 ATAATTTTTAAAATTTTT
70083844 TTGTAATTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
43 16 0.30
44 14 0.26
45 9 0.17
46 15 0.28
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.62
Consensus pattern (44 bp):
ATAATTTTTAAAATTTTTAAAAATTCTAACATATTTTTAATTTT
Found at i:70083850 original size:27 final size:27
Alignment explanation
Indices: 70083816--70083872 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 27
70083806 TTCTAACATA
*
70083816 TTTTTAATTTTTA-ATTTTTAAATTTT
1 TTTTTAATTTTTATATTTTTAAAGTTT
70083842 TTTTGTAATTTTTATATTTTTAAAGTTT
1 TTTT-TAATTTTTATATTTTTAAAGTTT
70083870 TTT
1 TTT
70083873 AGGTTTCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 4 0.14
27 9 0.32
28 15 0.54
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.72
Consensus pattern (27 bp):
TTTTTAATTTTTATATTTTTAAAGTTT
Found at i:70083852 original size:20 final size:19
Alignment explanation
Indices: 70083823--70083862 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
70083813 ATATTTTTAA
70083823 TTTTTAATTTTTAAATTTT
1 TTTTTAATTTTTAAATTTT
*
70083842 TTTTGTAATTTTTATATTTT
1 TTTT-TAATTTTTAAATTTT
70083862 T
1 T
70083863 AAAGTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.75
Consensus pattern (19 bp):
TTTTTAATTTTTAAATTTT
Found at i:70083852 original size:54 final size:55
Alignment explanation
Indices: 70083737--70083855 Score: 134
Period size: 54 Copynumber: 2.2 Consensus size: 55
70083727 ACAATTTCTA
* * * * *
70083737 ATAATTTTTATAATTTCTTACAATATTTTTACATTTTTTATTTTTTATAATTTTT
1 ATAATTTTTAAAAATTCTAACAATATTTTTACATTTTTAATTTTTAATAATTTTT
* **
70083792 AAAATTTTTAAAAATTCTAAC-ATATTTTTA-ATTTTTAATTTTTAAATTTTTTTT
1 ATAATTTTTAAAAATTCTAACAATATTTTTACATTTTTAATTTTT-AATAATTTTT
*
70083846 GTAATTTTTA
1 ATAATTTTTA
70083856 TATTTTTAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
53 12 0.23
54 24 0.45
55 17 0.32
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (55 bp):
ATAATTTTTAAAAATTCTAACAATATTTTTACATTTTTAATTTTTAATAATTTTT
Found at i:70083853 original size:8 final size:7
Alignment explanation
Indices: 70083815--70083864 Score: 59
Period size: 7 Copynumber: 7.1 Consensus size: 7
70083805 ATTCTAACAT
70083815 ATTTTTA
1 ATTTTTA
70083822 ATTTTTA
1 ATTTTTA
70083829 ATTTTTAA
1 ATTTTT-A
70083837 ATTTTT-
1 ATTTTTA
*
70083843 -TTTGTA
1 ATTTTTA
70083849 ATTTTTA
1 ATTTTTA
70083856 TATTTTTA
1 -ATTTTTA
70083864 A
1 A
70083865 AGTTTTTTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
5 4 0.11
7 19 0.51
8 14 0.38
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (7 bp):
ATTTTTA
Found at i:70086968 original size:29 final size:29
Alignment explanation
Indices: 70086931--70087036 Score: 97
Period size: 29 Copynumber: 3.4 Consensus size: 29
70086921 ATGAGCCTAA
70086931 TATTGTATTTATTAGGTCTTATTATTTCAT
1 TATT-TATTTATTAGGTCTTATTATTTCAT
* * *
70086961 TATTTATTTATTATGAATTTTGGATATATTGT-TT
1 TATTTATTTATTA-G-GTCTT--AT-TATT-TCAT
**
70086995 TAAGTATTTATTAGGTCTTATTATTTCAT
1 TATTTATTTATTAGGTCTTATTATTTCAT
70087024 TATTTATTTATTA
1 TATTTATTTATTA
70087037 TGAATTTTGG
Statistics
Matches: 59, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
28 1 0.02
29 25 0.42
30 7 0.12
31 3 0.05
32 3 0.05
33 3 0.05
34 16 0.27
35 1 0.02
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.60
Consensus pattern (29 bp):
TATTTATTTATTAGGTCTTATTATTTCAT
Found at i:70087008 original size:63 final size:63
Alignment explanation
Indices: 70086935--70087066 Score: 264
Period size: 63 Copynumber: 2.1 Consensus size: 63
70086925 GCCTAATATT
70086935 GTATTTATTAGGTCTTATTATTTCATTATTTATTTATTATGAATTTTGGATATATTGTTTTAA
1 GTATTTATTAGGTCTTATTATTTCATTATTTATTTATTATGAATTTTGGATATATTGTTTTAA
70086998 GTATTTATTAGGTCTTATTATTTCATTATTTATTTATTATGAATTTTGGATATATTGTTTTAA
1 GTATTTATTAGGTCTTATTATTTCATTATTTATTTATTATGAATTTTGGATATATTGTTTTAA
70087061 GTATTT
1 GTATTT
70087067 TAAGTTATTT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 69 1.00
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.59
Consensus pattern (63 bp):
GTATTTATTAGGTCTTATTATTTCATTATTTATTTATTATGAATTTTGGATATATTGTTTTAA
Found at i:70092005 original size:18 final size:17
Alignment explanation
Indices: 70091945--70092006 Score: 54
Period size: 19 Copynumber: 3.4 Consensus size: 17
70091935 ATATTTTGAT
70091945 ATACC-AAATTTTAAAATG
1 ATACCAAAATTTT--AATG
*
70091963 TATACCAAAATCTTTAACAG
1 -ATACCAAAAT-TTTAA-TG
70091983 ATACCAAAATTTCTAATG
1 ATACCAAAATTT-TAATG
70092001 ATACCA
1 ATACCA
70092007 CCAAAATTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
18 9 0.24
19 20 0.54
20 5 0.14
21 3 0.08
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.31
Consensus pattern (17 bp):
ATACCAAAATTTTAATG
Found at i:70094811 original size:19 final size:20
Alignment explanation
Indices: 70094787--70094829 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
70094777 TAATCAACTT
* *
70094787 AAAAATTGGACCTGAG-ATC
1 AAAAATTGAACCGGAGAATC
70094806 AAAAATTGAACCGGAGAATC
1 AAAAATTGAACCGGAGAATC
70094826 AAAA
1 AAAA
70094830 CTCGAGACTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.51, C:0.14, G:0.19, T:0.16
Consensus pattern (20 bp):
AAAAATTGAACCGGAGAATC
Found at i:70102174 original size:26 final size:26
Alignment explanation
Indices: 70102134--70102189 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
70102124 CTTATTAGAC
70102134 GTTAGGTGTTATATGTGCTTGGTTGA
1 GTTAGGTGTTATATGTGCTTGGTTGA
* *
70102160 GTTAGGTGTTCTATGTGGTTGGTTGA
1 GTTAGGTGTTATATGTGCTTGGTTGA
70102186 GTTA
1 GTTA
70102190 AAGCAGCCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.14, C:0.04, G:0.36, T:0.46
Consensus pattern (26 bp):
GTTAGGTGTTATATGTGCTTGGTTGA
Found at i:70103406 original size:34 final size:34
Alignment explanation
Indices: 70103361--70103426 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
70103351 TACTTATATC
* *
70103361 TTACTTCTAAATTGCAACTTCACCTCAGTATGTG
1 TTACTTATAAATTACAACTTCACCTCAGTATGTG
* **
70103395 TTACTTATAAATTACAATTTCGTCTCAGTATG
1 TTACTTATAAATTACAACTTCACCTCAGTATG
70103427 CAAATTTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.41
Consensus pattern (34 bp):
TTACTTATAAATTACAACTTCACCTCAGTATGTG
Found at i:70104272 original size:40 final size:40
Alignment explanation
Indices: 70104213--70104292 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
70104203 ACTTCCAGTC
** *
70104213 TAAGGAAAGAGTTATCCTAAATCCAAAGCCAATTTTAATG
1 TAAGGAAAGAGCAACCCTAAATCCAAAGCCAATTTTAATG
70104253 TAAGGAAAGAGCAACCCTAAATCCAAAGCCAATTTTAATG
1 TAAGGAAAGAGCAACCCTAAATCCAAAGCCAATTTTAATG
70104293 GTTCGTGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (40 bp):
TAAGGAAAGAGCAACCCTAAATCCAAAGCCAATTTTAATG
Found at i:70104624 original size:26 final size:26
Alignment explanation
Indices: 70104588--70104638 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
70104578 ATTGGCAAGT
*
70104588 CATATAAATAAATATATCTTACAATC
1 CATATAAATAAATATATCTCACAATC
70104614 CATATAAATAAATATATCTCACAAT
1 CATATAAATAAATATATCTCACAAT
70104639 TTACAAGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (26 bp):
CATATAAATAAATATATCTCACAATC
Found at i:70110438 original size:11 final size:10
Alignment explanation
Indices: 70110416--70110485 Score: 59
Period size: 10 Copynumber: 6.7 Consensus size: 10
70110406 AAAGAGTTTT
*
70110416 TTTATTATAA
1 TTTAATATAA
70110426 TTTAATCATAA
1 TTTAAT-ATAA
70110437 TTTAATATAA
1 TTTAATATAA
* *
70110447 TTATTATTTAA
1 TT-TAATATAA
* *
70110458 TATAATTATTA
1 TTTAA-TATAA
*
70110469 TTAAATATAA
1 TTTAATATAA
70110479 TTTAATA
1 TTTAATA
70110486 AAAATAAAAA
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
10 23 0.50
11 23 0.50
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.53
Consensus pattern (10 bp):
TTTAATATAA
Found at i:70110447 original size:16 final size:16
Alignment explanation
Indices: 70110417--70110480 Score: 83
Period size: 16 Copynumber: 3.9 Consensus size: 16
70110407 AAGAGTTTTT
* *
70110417 TTATTATAATTTAATCA
1 TTATT-TAATATAATTA
*
70110434 TAATTTAATATAATTA
1 TTATTTAATATAATTA
70110450 TTATTTAATATAATTA
1 TTATTTAATATAATTA
*
70110466 TTATTAAATATAATT
1 TTATTTAATATAATT
70110481 TAATAAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
16 38 0.90
17 4 0.10
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (16 bp):
TTATTTAATATAATTA
Found at i:70118963 original size:115 final size:109
Alignment explanation
Indices: 70118714--70119126 Score: 490
Period size: 115 Copynumber: 3.7 Consensus size: 109
70118704 GTGTATTTTA
* * * ** * * * *
70118714 TTAAGTGTGCATTAAAAGTATGATTTGTTTGTTTTATTATTGTTTTTATGATATCTTATATCAGT
1 TTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAGT
* ** * *
70118779 TTTATGTATTTAAGATAAATAAATTTTTTATTGTGTTTTATTAGAT
66 TTTTTGTATTTAAG-GGAA-AAATTTTTTTTTGTGTTTTATTAGGT
* *
70118825 TTAAGTTTGTATTAACA-GCATGATTAGTTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAG
1 TTAAGTTTGTATTAA-AGGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAG
*
70118889 TTTTTTTGTATTTAAAGGGAAGGACATTTTTTTTTGTGTGTTTAATTAGGT
65 -TTTTTTGTATTT-AAGGGAA--AAATTTTTTTTTGTGT-TTT-ATTAGGT
*
70118940 TTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAAT
1 TTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAGT
* *
70119005 TTTTTGTATTTAAGGGAAATA-TTATTTTTGTGTTTTATTAGGT
66 TTTTTGTATTTAAGGGAAAAATTTTTTTTTGTGTTTTATTAGGT
* ** **
70119048 TTAAGTTTATATTAAAGGTATGATTAATTT-TTTTATTAATGTTTTTGAAGTATCTTATATCGGT
1 TTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAGT
*
70119112 TTTTCGTATTTAAGG
66 TTTTTGTATTTAAGG
70119127 TATGAATATA
Statistics
Matches: 268, Mismatches: 27, Indels: 18
0.86 0.09 0.06
Matches are distributed among these distances:
107 43 0.16
108 36 0.13
109 3 0.01
110 11 0.04
111 56 0.21
112 14 0.05
113 24 0.09
114 16 0.06
115 65 0.24
ACGTcount: A:0.26, C:0.03, G:0.16, T:0.55
Consensus pattern (109 bp):
TTAAGTTTGTATTAAAGGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTATCTTATATTAGT
TTTTTGTATTTAAGGGAAAAATTTTTTTTTGTGTTTTATTAGGT
Found at i:70119999 original size:14 final size:15
Alignment explanation
Indices: 70119973--70120007 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
70119963 ATTTTCATTA
70119973 TTATTTAAAAATAAT
1 TTATTTAAAAATAAT
70119988 TTATTT-AAAATAAT
1 TTATTTAAAAATAAT
70120002 TTATTT
1 TTATTT
70120008 TTAATATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.70
15 6 0.30
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TTATTTAAAAATAAT
Found at i:70120091 original size:36 final size:35
Alignment explanation
Indices: 70120041--70120108 Score: 91
Period size: 36 Copynumber: 1.9 Consensus size: 35
70120031 TTTTTTAGTT
* *
70120041 ATTATTTAACAAAAACATAATTTTAATTTATTTTTC
1 ATTATTTAACAAAAACAGAAATTTAA-TTATTTTTC
* *
70120077 ATTATTTAATAAAAATAGAAATTTAATTATTT
1 ATTATTTAACAAAAACAGAAATTTAATTATTT
70120109 AATATATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 6 0.21
36 22 0.79
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.49
Consensus pattern (35 bp):
ATTATTTAACAAAAACAGAAATTTAATTATTTTTC
Found at i:70126080 original size:43 final size:43
Alignment explanation
Indices: 70126032--70126119 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
70126022 TTTTTGAGCA
* ** *
70126032 TATTTTAAATTTTTTCTTTTTTCACTCTCAATTCTTTTAGCCC
1 TATTTTAAATTTTTGCCCTTTTCACTCTCAATGCTTTTAGCCC
*
70126075 TATTTTTAATTTTTGCCCTTTTCACTCTCAATGCTTTTAGCCC
1 TATTTTAAATTTTTGCCCTTTTCACTCTCAATGCTTTTAGCCC
70126118 TA
1 TA
70126120 ACCATGCTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.18, C:0.23, G:0.05, T:0.55
Consensus pattern (43 bp):
TATTTTAAATTTTTGCCCTTTTCACTCTCAATGCTTTTAGCCC
Found at i:70130349 original size:10 final size:10
Alignment explanation
Indices: 70130322--70130371 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
70130312 TTAAATTCTA
70130322 AAAGATAAAT
1 AAAGATAAAT
*
70130332 -ACGAATAAAT
1 AAAG-ATAAAT
*
70130342 AAAGATAATT
1 AAAGATAAAT
70130352 AAAGATAAAT
1 AAAGATAAAT
70130362 GAAA-ATAAAT
1 -AAAGATAAAT
70130372 CCTAAAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 2 0.06
10 26 0.79
11 5 0.15
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:70132223 original size:18 final size:18
Alignment explanation
Indices: 70132200--70132234 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
70132190 AAGAAGAGAA
70132200 ATTAATTATCACTCAAAG
1 ATTAATTATCACTCAAAG
70132218 ATTAATTATCACTCAAA
1 ATTAATTATCACTCAAA
70132235 CAAAATAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.34
Consensus pattern (18 bp):
ATTAATTATCACTCAAAG
Found at i:70132258 original size:15 final size:15
Alignment explanation
Indices: 70132238--70132340 Score: 69
Period size: 15 Copynumber: 7.1 Consensus size: 15
70132228 ACTCAAACAA
70132238 AATAAAGTAATAAAT
1 AATAAAGTAATAAAT
* *
70132253 AATAAAATAA-AATAA
1 AATAAAGTAATAA-AT
*
70132268 AATAAAGTAATGAAT
1 AATAAAGTAATAAAT
70132283 AAATAAA-TAATAAAT
1 -AATAAAGTAATAAAT
*
70132298 -A-AAA-TAAAAAAT
1 AATAAAGTAATAAAT
*
70132310 AATAAAATAAAATAAA-
1 AATAAAGT--AATAAAT
70132326 AATAAAG-AA-AAAT
1 AATAAAGTAATAAAT
70132339 AA
1 AA
70132341 AAATTGGGTT
Statistics
Matches: 70, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
12 13 0.19
13 6 0.09
14 5 0.07
15 28 0.40
16 13 0.19
17 5 0.07
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (15 bp):
AATAAAGTAATAAAT
Found at i:70132263 original size:5 final size:5
Alignment explanation
Indices: 70132253--70132342 Score: 80
Period size: 5 Copynumber: 17.4 Consensus size: 5
70132243 AGTAATAAAT
*
70132253 AATAA AATAA AATAA AATAA AGTAA TGAAT-A AAT-A AATAATA AATAA
1 AATAA AATAA AATAA AATAA AATAA --AATAA AATAA AAT-A-A AATAA
70132300 AATAA AA-AA TAATAA AATAA AATAAA AATAA AGA-AA AATAA AA
1 AATAA AATAA -AATAA AATAA AAT-AA AATAA A-ATAA AATAA AA
70132343 ATTGGGTTGC
Statistics
Matches: 73, Mismatches: 2, Indels: 20
0.77 0.02 0.21
Matches are distributed among these distances:
4 10 0.14
5 47 0.64
6 10 0.14
7 6 0.08
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:70132329 original size:42 final size:40
Alignment explanation
Indices: 70132253--70132342 Score: 62
Period size: 42 Copynumber: 2.2 Consensus size: 40
70132243 AGTAATAAAT
* * *
70132253 AATAAAATAAAATAA-AATAAAGTAATGAATAAATAAATAAT-A
1 AATAAAATAAAA-AATAATAAAATAA--AAAAAAT-AAGAATAA
70132295 AATAAAATAAAAAATAATAAAATAAAATAAAAATAA-AGA-AA
1 AATAAAATAAAAAATAATAAAAT-AAA-AAAAATAAGA-ATAA
70132336 AATAAAA
1 AATAAAA
70132343 ATTGGGTTGC
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
40 1 0.02
41 14 0.34
42 24 0.59
43 2 0.05
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (40 bp):
AATAAAATAAAAAATAATAAAATAAAAAAAATAAGAATAA
Found at i:70134718 original size:40 final size:40
Alignment explanation
Indices: 70134649--70134844 Score: 216
Period size: 40 Copynumber: 5.2 Consensus size: 40
70134639 AACCCAAGTA
* *
70134649 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70134688 CCTTCGGGACTTAGCCCGGATATAGTAACTCCCACAAA--
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
70134726 --------ACTAAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70134758 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** * *
70134798 CCTTCGAGACTTAGCCTAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70134838 CCTTCGG
1 CCTTCGG
70134845 ATCTTAGTCC
Statistics
Matches: 130, Mismatches: 16, Indels: 21
0.78 0.10 0.13
Matches are distributed among these distances:
30 27 0.21
39 13 0.10
40 90 0.69
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70134776 original size:70 final size:70
Alignment explanation
Indices: 70134663--70134795 Score: 239
Period size: 70 Copynumber: 1.9 Consensus size: 70
70134653 CGGGATTTAG
70134663 CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCCCACAAAAC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCCCACAAAAC
70134728 TAAGC
66 TAAGC
* * *
70134733 CCGGATATAGTAACTCGTACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCCCACAAA
70134796 TACCTTCGAG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (70 bp):
CCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCCCACAAAAC
TAAGC
Found at i:70143493 original size:47 final size:47
Alignment explanation
Indices: 70143386--70143790 Score: 641
Period size: 47 Copynumber: 8.6 Consensus size: 47
70143376 GATAATTGTG
* *
70143386 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCG-TGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
70143432 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
70143479 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
70143528 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
70143575 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
70143624 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
70143671 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
70143718 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
70143765 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
70143791 TCCCGAAGGG
Statistics
Matches: 334, Mismatches: 20, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
46 35 0.10
47 207 0.62
49 92 0.28
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:70143550 original size:96 final size:96
Alignment explanation
Indices: 70143386--70143790 Score: 680
Period size: 96 Copynumber: 4.3 Consensus size: 96
70143376 GATAATTGTG
70143386 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCG-TGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
70143448 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
70143479 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
70143544 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
70143575 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
70143640 ATGTGATAAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
*
70143671 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * *
70143734 ATGTGACAGGGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAGGCCGAATGGCCGATGTGATGA
70143765 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
70143791 TCCCGAAGGG
Statistics
Matches: 295, Mismatches: 12, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
93 5 0.02
94 96 0.33
95 32 0.11
96 162 0.55
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCGAATGGCCGATGTGATGA
Found at i:70143662 original size:143 final size:141
Alignment explanation
Indices: 70143386--70143790 Score: 650
Period size: 143 Copynumber: 2.9 Consensus size: 141
70143376 GATAATTGTG
* *
70143386 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCG-TGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
70143450 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATA
70143515 GCCGATGTGATGA
129 GCCGATGTGATGA
*
70143528 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
*
70143593 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
64 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA
70143658 GCCGATGTGATGA
129 GCCGATGTGATGA
*
70143671 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
70143736 GTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
70143791 TCCCGAAGGG
Statistics
Matches: 245, Mismatches: 15, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
141 54 0.22
142 35 0.14
143 110 0.45
145 46 0.19
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGC
CGATGTGATGA
Found at i:70147153 original size:30 final size:30
Alignment explanation
Indices: 70147117--70147175 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
70147107 CCTTCGAGAC
*
70147117 CTTAGCCCGGATATAGTAACTCGCACAAAA
1 CTTAGCCCAGATATAGTAACTCGCACAAAA
*
70147147 CTTAGCCCAGATATAGTAACTCGTACAAA
1 CTTAGCCCAGATATAGTAACTCGCACAAA
70147176 TGCCTTCGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.22
Consensus pattern (30 bp):
CTTAGCCCAGATATAGTAACTCGCACAAAA
Found at i:70147201 original size:40 final size:40
Alignment explanation
Indices: 70147146--70147264 Score: 175
Period size: 40 Copynumber: 3.0 Consensus size: 40
70147136 CTCGCACAAA
* *
70147146 ACTTAGCCCAGATATAGTAACTCGTACAAATGCCTTCGGG
1 ACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG
* *
70147186 ACTTAGCCCGGATATAGTAACTCGCACAAATACCTTCGAG
1 ACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG
* * *
70147226 ACTTAGCCTGGATATAGTCACTAGCACAAATGCCTTCGG
1 ACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGG
70147265 ATCTTAGTCC
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.24
Consensus pattern (40 bp):
ACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG
Found at i:70149478 original size:13 final size:13
Alignment explanation
Indices: 70149460--70149493 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
70149450 TAATATATAT
70149460 TAACCCAAGTACC
1 TAACCCAAGTACC
70149473 TAACCCAAGTACC
1 TAACCCAAGTACC
70149486 TAACCCAA
1 TAACCCAA
70149494 CCCAATTACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.41, C:0.38, G:0.06, T:0.15
Consensus pattern (13 bp):
TAACCCAAGTACC
Found at i:70149497 original size:18 final size:18
Alignment explanation
Indices: 70149474--70149511 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
70149464 CCAAGTACCT
*
70149474 AACCCAAGTACCTAACCC
1 AACCCAAGTACCCAACCC
*
70149492 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
70149510 AA
1 AA
70149512 TCATAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.45, G:0.03, T:0.11
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:70149504 original size:13 final size:13
Alignment explanation
Indices: 70149488--70149512 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70149478 CAAGTACCTA
70149488 ACCCAACCCAATT
1 ACCCAACCCAATT
70149501 ACCCAACCCAAT
1 ACCCAACCCAAT
70149513 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:70149671 original size:9 final size:9
Alignment explanation
Indices: 70149594--70149670 Score: 109
Period size: 9 Copynumber: 8.6 Consensus size: 9
70149584 TTTATACAAA
70149594 TAATTCGGT
1 TAATTCGGT
70149603 TAATTCGGT
1 TAATTCGGT
* *
70149612 TAATTTGGG
1 TAATTCGGT
*
70149621 TAATTCGGG
1 TAATTCGGT
70149630 TAATTCGGT
1 TAATTCGGT
*
70149639 TAATTCGAT
1 TAATTCGGT
70149648 TAATTCGGT
1 TAATTCGGT
*
70149657 TAATTTGGT
1 TAATTCGGT
70149666 TAATT
1 TAATT
70149671 TTATACTTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 61 1.00
ACGTcount: A:0.25, C:0.08, G:0.22, T:0.45
Consensus pattern (9 bp):
TAATTCGGT
Found at i:70149860 original size:12 final size:12
Alignment explanation
Indices: 70149843--70149867 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
70149833 TTATTTCGGG
70149843 TCGGTTAACCGA
1 TCGGTTAACCGA
70149855 TCGGTTAACCGA
1 TCGGTTAACCGA
70149867 T
1 T
70149868 TGAACACCCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (12 bp):
TCGGTTAACCGA
Found at i:70152505 original size:10 final size:10
Alignment explanation
Indices: 70152486--70152535 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
70152476 TTAAATTCTA
70152486 AAAGATAAAT
1 AAAGATAAAT
70152496 ACAA-ATAAAT
1 A-AAGATAAAT
*
70152506 AAAGATAATT
1 AAAGATAAAT
70152516 AAAGATAAAT
1 AAAGATAAAT
70152526 GAAA-ATAAAT
1 -AAAGATAAAT
70152536 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:70154033 original size:37 final size:37
Alignment explanation
Indices: 70153957--70154033 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 37
70153947 GATAATCACT
* *
70153957 TTAATATTAAATTAATAATATACTATCAAGATAAGTA
1 TTAATATTAAATTAATAATAAACTATCAAAATAAGTA
* *
70153994 TTAA-ATTAAAGTTAATATTAAATCTATTAAAATAA-TA
1 TTAATATTAAA-TTAATAATAAA-CTATCAAAATAAGTA
70154031 TTA
1 TTA
70154034 TTTTTGAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
36 6 0.18
37 18 0.53
38 10 0.29
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (37 bp):
TTAATATTAAATTAATAATAAACTATCAAAATAAGTA
Found at i:70155769 original size:64 final size:64
Alignment explanation
Indices: 70155664--70155794 Score: 201
Period size: 64 Copynumber: 2.0 Consensus size: 64
70155654 TAAACTTGTC
* *
70155664 TTAACAATAAAATTTAGGAGAAATATAGAAATATTAGTATAAAATAAA-GTTTAATAATTTAAT
1 TTAACAATAAAATTTAGGAGAAATATAGAAATATTAATATAAAACAAATGTTTAATAATTTAAT
* * *
70155727 TTAACAATAAAATTTAGGGAGAATTATAGAAATATTAATATAAAACAAATTTTTAATCATTTAAT
1 TTAACAATAAAATTTA-GGAGAAATATAGAAATATTAATATAAAACAAATGTTTAATAATTTAAT
70155792 TTA
1 TTA
70155795 GAATAGGAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
63 16 0.26
64 29 0.48
65 16 0.26
ACGTcount: A:0.52, C:0.03, G:0.08, T:0.37
Consensus pattern (64 bp):
TTAACAATAAAATTTAGGAGAAATATAGAAATATTAATATAAAACAAATGTTTAATAATTTAAT
Found at i:70155938 original size:46 final size:46
Alignment explanation
Indices: 70155878--70155984 Score: 160
Period size: 46 Copynumber: 2.3 Consensus size: 46
70155868 ACTTTATTTC
* * *
70155878 AAAATTTCAAAATTTTCTTAATATATAAATCATTTACCCTGATAGT
1 AAAATTTTAAAATTTTCTTAATATATAAATAATTTACCCTAATAGT
* *
70155924 AAAATTTTATAATTTTCTTAATATATAAATAATTTATCCTAATAGT
1 AAAATTTTAAAATTTTCTTAATATATAAATAATTTACCCTAATAGT
*
70155970 AAACTTTTAAAATTT
1 AAAATTTTAAAATTT
70155985 ATACAAATGA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 54 1.00
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.45
Consensus pattern (46 bp):
AAAATTTTAAAATTTTCTTAATATATAAATAATTTACCCTAATAGT
Found at i:70158056 original size:22 final size:22
Alignment explanation
Indices: 70158014--70158058 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
70158004 ACTTTTTTTG
**
70158014 TATTTATAATTACGCTTTATTT
1 TATTTATAATTACGCCCTATTT
70158036 TATTTATAATTTA-GCCCTATTT
1 TATTTATAA-TTACGCCCTATTT
70158058 T
1 T
70158059 TTTGTTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.27, C:0.11, G:0.04, T:0.58
Consensus pattern (22 bp):
TATTTATAATTACGCCCTATTT
Found at i:70158502 original size:26 final size:25
Alignment explanation
Indices: 70158446--70158503 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 25
70158436 CTATATTATC
* **
70158446 TATTATATTATTTATGTTTTATTAT
1 TATTATATTATTTATATTTTAAAAT
70158471 TCATTATATTATTTATAATTTTAAAAT
1 T-ATTATATTATTTAT-ATTTTAAAAT
70158498 TATTAT
1 TATTAT
70158504 TAAATTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 1 0.04
26 19 0.68
27 8 0.29
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
TATTATATTATTTATATTTTAAAAT
Found at i:70162393 original size:14 final size:14
Alignment explanation
Indices: 70162374--70162403 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70162364 AATATATTCT
70162374 TTTTCTAAATAAAG
1 TTTTCTAAATAAAG
*
70162388 TTTTCTAAATGAAG
1 TTTTCTAAATAAAG
70162402 TT
1 TT
70162404 GAACCAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.47
Consensus pattern (14 bp):
TTTTCTAAATAAAG
Found at i:70171046 original size:206 final size:206
Alignment explanation
Indices: 70170519--70171070 Score: 811
Period size: 205 Copynumber: 2.7 Consensus size: 206
70170509 GATCAAGCTA
* *
70170519 AAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACGAACCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
* * * *
70170584 TTGGCTTTCATGTGCTTACGATGAAGCAATTCTAAGATGATTTGGCATCTTTGTATTGTCAGAGA
66 TTGGCTTTCATGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * *
70170649 TCAAATCGAAGTCTGGCATCTCCACTTTAACGAGGAGCAGATAAATAGCAGATCTCACCTTCAGA
131 ACAAATCGAAGTCTGGCATCTCCACTTCAACGAGAAGCAGATAAATAGCAGATCTCACCTTCAGA
* * *
70170714 TGTTTATACTG
196 CGATTAGACTG
* **
70170725 AAG-TAGATCCAAGATGGTTTGATATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
1 AAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
70170789 TTGGCTTTCATGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
66 TTGGCTTTCATGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * * *
70170854 ACAAATCGAAGTCTGGCATTTCCACTTCAACG-GAAAGCAGATACATAGCAGATCTGACCTTTAG
131 ACAAATCGAAGTCTGGCATCTCCACTTCAACGAG-AAGCAGATAAATAGCAGATCTCACCTTCAG
70170918 ACGATTAGACTG
195 ACGATTAGACTG
* * * *
70170930 AAGCAAGATCCAAGATGATTTGGCATCCTTGTTCTTACAAGGAAAAAATCGGAGACATAGCTGAT
1 AAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
*** * * * *
70170995 TTGGCTTTCGCCTGTTTATGCTGAAGCAAATCTGAGATGATTTGTCATCTCTGTATTGTCAGAAA
66 TTGGCTTTCATGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
70171060 ACAAATCGAAG
131 ACAAATCGAAG
70171071 AAACAGATTT
Statistics
Matches: 311, Mismatches: 33, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
204 1 0.00
205 184 0.59
206 126 0.41
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (206 bp):
AAGCAAGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGAT
TTGGCTTTCATGTGTTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
ACAAATCGAAGTCTGGCATCTCCACTTCAACGAGAAGCAGATAAATAGCAGATCTCACCTTCAGA
CGATTAGACTG
Found at i:70172640 original size:22 final size:22
Alignment explanation
Indices: 70172601--70172643 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
70172591 TTTTTTTATG
*
70172601 TTTATAATTACGCTTTATTTTA
1 TTTATAATTACGCCTTATTTTA
70172623 TTTATAATTTA-GCCTTATTTT
1 TTTATAA-TTACGCCTTATTTT
70172644 TTTTGTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.26, C:0.09, G:0.05, T:0.60
Consensus pattern (22 bp):
TTTATAATTACGCCTTATTTTA
Found at i:70177423 original size:13 final size:14
Alignment explanation
Indices: 70177392--70177428 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
70177382 AAATAAGTCT
70177392 AAAAATCTAATATA
1 AAAAATCTAATATA
70177406 AAAAAT-TAATATA
1 AAAAATCTAATATA
*
70177419 AAAAACCTAA
1 AAAAATCTAA
70177429 AGCGGAACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.57
14 9 0.43
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAAATCTAATATA
Found at i:70177536 original size:16 final size:16
Alignment explanation
Indices: 70177517--70177552 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
70177507 ATGATTAACA
70177517 TATTA-TATATATTTAT
1 TATTATTAT-TATTTAT
70177533 TATTATTATTATTTAT
1 TATTATTATTATTTAT
70177549 TATT
1 TATT
70177553 TAACACAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATTATTATTATTTAT
Found at i:70179230 original size:34 final size:34
Alignment explanation
Indices: 70179187--70179255 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
70179177 TTTTTTATCA
*
70179187 TAAGTGATACTTAAATTATTCTTCTGTTACTCAT
1 TAAGTGATACTTAAACTATTCTTCTGTTACTCAT
*
70179221 TAAGTGATACTTAAACTATTCTTCTGTTATTCAT
1 TAAGTGATACTTAAACTATTCTTCTGTTACTCAT
70179255 T
1 T
70179256 TTACACAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.29, C:0.14, G:0.09, T:0.48
Consensus pattern (34 bp):
TAAGTGATACTTAAACTATTCTTCTGTTACTCAT
Found at i:70179395 original size:9 final size:10
Alignment explanation
Indices: 70179379--70179403 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
70179369 TCTATTTCCC
70179379 CTTTTTTTTT
1 CTTTTTTTTT
70179389 CTTTTTTTTT
1 CTTTTTTTTT
70179399 CTTTT
1 CTTTT
70179404 ATGATGCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:70180514 original size:7 final size:7
Alignment explanation
Indices: 70180455--70180534 Score: 79
Period size: 7 Copynumber: 11.4 Consensus size: 7
70180445 TTCCTTCCTA
*
70180455 AATTCTC
1 AATTTTC
*
70180462 AATCTTC
1 AATTTTC
*
70180469 AATCTTC
1 AATTTTC
**
70180476 AATCCTC
1 AATTTTC
*
70180483 AATTTCC
1 AATTTTC
70180490 AATTTTC
1 AATTTTC
*
70180497 TATTTTC
1 AATTTTC
70180504 AATTTTC
1 AATTTTC
*
70180511 AATTTTG
1 AATTTTC
*
70180518 AATTTTG
1 AATTTTC
70180525 AATTTTC
1 AATTTTC
70180532 AAT
1 AAT
70180535 CCTAAATCCT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 62 1.00
ACGTcount: A:0.29, C:0.19, G:0.03, T:0.50
Consensus pattern (7 bp):
AATTTTC
Found at i:70181734 original size:455 final size:455
Alignment explanation
Indices: 70180883--70181791 Score: 1737
Period size: 455 Copynumber: 2.0 Consensus size: 455
70180873 TCCCTCACTT
**
70180883 ATTAGTGCTTTGGTTGAAAGATGGAGACCAGAGGCACACATATTCCATCTTCCTTGCGGTGAGTG
1 ATTAGTGCTTTGGTCAAAAGATGGAGACCAGAGGCACACATATTCCATCTTCCTTGCGGTGAGTG
70180948 TACAATTGCACTCGAGAACATTAGTTTGCAACTTGGTCTATTGGTCAATGGAGAAGTCGATACGG
66 TACAATTGCACTCGAGAACATTAGTTTGCAACTTGGTCTATTGGTCAATGGAGAAGTCGATACGG
*
70181013 GGCCAGTTATTAGTGTCGAGTGGAGTGCAACATGCGACCAATTACTAGGAAAGGTGTCGAACAAG
131 GGCCAGTTATTAGTGTCGAGTGGAGTGCAACATGAGACCAATTACTAGGAAAGGTGTCGAACAAG
*
70181078 TTTAGAGATAGCCGGATCGAGATGAGATGGTTGGAGGAGAACTTGCAAACTATTGAGGCTTCTAC
196 TTTAGAGATAGCCGGATCGAAATGAGATGGTTGGAGGAGAACTTGCAAACTATTGAGGCTTCTAC
*
70181143 GAGTGACATTGAAAAGGAACAATTCACGCGCGCATTCATCTTAAGGTTGATTAGGGGTCTGCTAA
261 GAGTGACATTGAAAAGGAACAATTCAAGCGCGCATTCATCTTAAGGTTGATTAGGGGTCTGCTAA
*
70181208 TGCTAGATAAATCTCACAATTTGGTGTATTTAAGGTGGCTACTACTAATAGCCGACTTAAAAGAA
326 TGCTAGATAAATCTCACAATTTGGTGCATTTAAGGTGGCTACTACTAATAGCCGACTTAAAAGAA
70181273 TTGGGATGACTTAGTTGGGGATCTGTAGTGCTGGTGACATTGTACTGAGAAATGTGTTGAGTGAC
391 TTGGGATGACTTAGTTGGGGATCTGTAGTGCTGGTGACATTGTACTGAGAAATGTGTTGAGTGAC
70181338 ATTAGTGCTTTGGTCAAAAGATGGAGACCAGAGGCACACATATTCCATCTTCCTTGCGGTGAGTG
1 ATTAGTGCTTTGGTCAAAAGATGGAGACCAGAGGCACACATATTCCATCTTCCTTGCGGTGAGTG
70181403 TACAATTGCACTCGAGAACATTAGTTTGCAACTTGGTCTATTGGTCAATGGAGAAGTCGATACGG
66 TACAATTGCACTCGAGAACATTAGTTTGCAACTTGGTCTATTGGTCAATGGAGAAGTCGATACGG
70181468 GGCCAGTTATTAGTGTCGAGTGGAGTGCAACATGAGACCAATTACTAGGAAAGGTGTCGAACAAG
131 GGCCAGTTATTAGTGTCGAGTGGAGTGCAACATGAGACCAATTACTAGGAAAGGTGTCGAACAAG
*
70181533 TTTAGGGATAGCCGGATCGAAATGAGATGGTTGGAGGAGAACTTGCAAACTATTGAGGCTTCTAC
196 TTTAGAGATAGCCGGATCGAAATGAGATGGTTGGAGGAGAACTTGCAAACTATTGAGGCTTCTAC
*
70181598 GAGTGACATTGAAAAGGAACAATTCAATCGCGCATTCATCTTAAGGTTGATTAGGGGTCTGCTAA
261 GAGTGACATTGAAAAGGAACAATTCAAGCGCGCATTCATCTTAAGGTTGATTAGGGGTCTGCTAA
*
70181663 TGCTAGATAAATCTCGCAATTTGGTGCATTTAAGGTGGCTACTACTAATAGCCGACTTAAAAGAA
326 TGCTAGATAAATCTCACAATTTGGTGCATTTAAGGTGGCTACTACTAATAGCCGACTTAAAAGAA
70181728 TTGGGATGACTTAGTTGGGGATCTGTAGTGCTGGTGACATTGTACTGAGAAATGTGTTGAGTGA
391 TTGGGATGACTTAGTTGGGGATCTGTAGTGCTGGTGACATTGTACTGAGAAATGTGTTGAGTGA
70181792 TGATACCGGA
Statistics
Matches: 445, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
455 445 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (455 bp):
ATTAGTGCTTTGGTCAAAAGATGGAGACCAGAGGCACACATATTCCATCTTCCTTGCGGTGAGTG
TACAATTGCACTCGAGAACATTAGTTTGCAACTTGGTCTATTGGTCAATGGAGAAGTCGATACGG
GGCCAGTTATTAGTGTCGAGTGGAGTGCAACATGAGACCAATTACTAGGAAAGGTGTCGAACAAG
TTTAGAGATAGCCGGATCGAAATGAGATGGTTGGAGGAGAACTTGCAAACTATTGAGGCTTCTAC
GAGTGACATTGAAAAGGAACAATTCAAGCGCGCATTCATCTTAAGGTTGATTAGGGGTCTGCTAA
TGCTAGATAAATCTCACAATTTGGTGCATTTAAGGTGGCTACTACTAATAGCCGACTTAAAAGAA
TTGGGATGACTTAGTTGGGGATCTGTAGTGCTGGTGACATTGTACTGAGAAATGTGTTGAGTGAC
Found at i:70187911 original size:25 final size:24
Alignment explanation
Indices: 70187882--70187950 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
70187872 CCGATTGCAG
*
70187882 CTCGTGAGAGCTTACCAATTTTCAA
1 CTCGTGAGAGCTTACCAATTGT-AA
* *
70187907 CTCGT-ATGAGTTTACCAATTGTAG
1 CTCGTGA-GAGCTTACCAATTGTAA
*
70187931 CTCGTGAGAGCTTAACAATT
1 CTCGTGAGAGCTTACCAATT
70187951 CTCATCTTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
24 18 0.49
25 19 0.51
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (24 bp):
CTCGTGAGAGCTTACCAATTGTAA
Found at i:70187941 original size:49 final size:49
Alignment explanation
Indices: 70187869--70187965 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 49
70187859 TCATTAGGGA
* * *
70187869 TTACCGATTGCAGCTCGTGAGAGCTTACCAATTTTCAACTCGTATGAGT
1 TTACCAATTGCAGCTCGTGAGAGCTTAACAATTCTCAACTCGTATGAGT
* * *
70187918 TTACCAATTGTAGCTCGTGAGAGCTTAACAATTCTCATCTTGTATGAG
1 TTACCAATTGCAGCTCGTGAGAGCTTAACAATTCTCAACTCGTATGAG
70187966 CTTATCGATT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (49 bp):
TTACCAATTGCAGCTCGTGAGAGCTTAACAATTCTCAACTCGTATGAGT
Found at i:70187949 original size:24 final size:24
Alignment explanation
Indices: 70187869--70187950 Score: 85
Period size: 24 Copynumber: 3.4 Consensus size: 24
70187859 TCATTAGGGA
* *
70187869 TTACCGATTGCAGCTCGTGAGAGC
1 TTACCAATTGTAGCTCGTGAGAGC
* * *
70187893 TTACCAATTTTCAACTCGT-ATGAGT
1 TTACCAATTGT-AGCTCGTGA-GAGC
70187918 TTACCAATTGTAGCTCGTGAGAGC
1 TTACCAATTGTAGCTCGTGAGAGC
*
70187942 TTAACAATT
1 TTACCAATT
70187951 CTCATCTTGT
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
24 26 0.57
25 20 0.43
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (24 bp):
TTACCAATTGTAGCTCGTGAGAGC
Found at i:70188020 original size:25 final size:25
Alignment explanation
Indices: 70187962--70188020 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
70187952 TCATCTTGTA
* * * *
70187962 TGAGCTTATCGATTTATAGCTCGTG
1 TGAGCATACCGATTCATAGCTCATG
* *
70187987 CGAGTATACCGATTCATAGCTCATG
1 TGAGCATACCGATTCATAGCTCATG
70188012 TGAGCATAC
1 TGAGCATAC
70188021 ATGTACAAGA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (25 bp):
TGAGCATACCGATTCATAGCTCATG
Found at i:70192571 original size:93 final size:93
Alignment explanation
Indices: 70192412--70192580 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
70192402 CGCCCATAAG
* * *
70192412 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70192477 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * * *
70192505 CGAACTCGGACTCAACTCAATGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70192570 ACGAGTTCGGA
66 ACGAGTTCGGA
70192581 AGCTCAACCA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70192580 original size:46 final size:46
Alignment explanation
Indices: 70192405--70192580 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
70192395 TGTAACCCGC
* * * * *
70192405 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* * * *
70192451 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
70192501 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
*
70192544 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70192581 AGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:70192599 original size:46 final size:46
Alignment explanation
Indices: 70192456--70192592 Score: 122
Period size: 47 Copynumber: 3.0 Consensus size: 46
70192446 CGCATCCATG
*
70192456 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGAAGCTC-A---ACCATCTC
* * ** * *
70192504 A-CGAACTCGGACTCAACTCAATGAGTTCGGACATTTGCATCCA--TA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGA-AGCT-CAACCATCTC
70192549 AGTGAACTCGGACTCAACTCAACGAGTTCGGAAGCTCAACCATC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGAAGCTCAACCATC
70192593 CTAGTGACAT
Statistics
Matches: 70, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
44 5 0.07
45 4 0.06
46 28 0.40
47 30 0.43
48 1 0.01
49 1 0.01
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGAAGCTCAACCATCTC
Found at i:70206764 original size:11 final size:11
Alignment explanation
Indices: 70206748--70206775 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
70206738 GCTAGTGTAA
70206748 GACATGTCTGG
1 GACATGTCTGG
70206759 GACATGTCTGG
1 GACATGTCTGG
70206770 GACATG
1 GACATG
70206776 CATCGGCCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.18, G:0.36, T:0.25
Consensus pattern (11 bp):
GACATGTCTGG
Found at i:70207083 original size:49 final size:48
Alignment explanation
Indices: 70206763--70207101 Score: 236
Period size: 46 Copynumber: 7.2 Consensus size: 48
70206753 GTCTGGGACA
* *
70206763 TGTCTGGGACATGCATCGGCCAC-AT-TATGAAAGCCAGTGTAAGACA
1 TGTCTGGGACATGCATCGGCCTCGATATATGAAAGCCAGTGTAAGACC
* *
70206809 TGTCTGGGACATGCATCGGCCAC-AT-TATGAAAGCCAGTGTAAGACA
1 TGTCTGGGACATGCATCGGCCTCGATATATGAAAGCCAGTGTAAGACC
* * * * * * * ** *
70206855 TGTTTGGGACATACATCGGCATTG--AGACGAGAGTTAGTGTAAGACA
1 TGTCTGGGACATGCATCGGCCTCGATATATGAAAGCCAGTGTAAGACC
* * *
70206901 TGTCTGGGACATGCATCGGCCTCGAGATAT-ACAAGCTAGTATAAGACC
1 TGTCTGGGACATGCATCGGCCTCGATATATGA-AAGCCAGTGTAAGACC
* * * * * * *
70206949 TATTTGGGACATGGCATCAG-CTTG-T-TGTG--TGTCAGTGTAAGACC
1 TGTCTGGGACAT-GCATCGGCCTCGATATATGAAAGCCAGTGTAAGACC
** * * ** *
70206993 TGTCTGGGACATGGCATCAACAC-CGGTAGATGAGCGCCAGTGTAAAACC
1 TGTCTGGGACAT-GCATCGGC-CTCGATATATGAAAGCCAGTGTAAGACC
* *
70207042 TGTCTGGGACATGGCATCAGCCTCGATATATGAAAGTCAGTGTAAGACC
1 TGTCTGGGACAT-GCATCGGCCTCGATATATGAAAGCCAGTGTAAGACC
*
70207091 TGTCTAGGACA
1 TGTCTGGGACA
70207102 CAACATCGAC
Statistics
Matches: 232, Mismatches: 47, Indels: 25
0.76 0.15 0.08
Matches are distributed among these distances:
44 28 0.12
45 1 0.00
46 104 0.45
47 3 0.01
48 28 0.12
49 68 0.29
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (48 bp):
TGTCTGGGACATGCATCGGCCTCGATATATGAAAGCCAGTGTAAGACC
Found at i:70209129 original size:27 final size:28
Alignment explanation
Indices: 70209048--70209142 Score: 129
Period size: 27 Copynumber: 3.4 Consensus size: 28
70209038 GAGATTGGCG
* * * *
70209048 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
70209077 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
70209105 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
70209132 CTGAGTGTGCG
1 CTAAGTGTGCG
70209143 GACTTAATAT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.39
28 22 0.36
29 15 0.25
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:70209153 original size:27 final size:27
Alignment explanation
Indices: 70209073--70209155 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
70209063 TAAATTGTAC
* *
70209073 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
70209101 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
70209128 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
70209155 A
1 A
70209156 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:70211224 original size:42 final size:42
Alignment explanation
Indices: 70211159--70211252 Score: 152
Period size: 42 Copynumber: 2.2 Consensus size: 42
70211149 CGTGTGTCTA
70211159 GGCCGTGTGTGACGCACGATCAGCCCCATAGGCATGATGTTC
1 GGCCGTGTGTGACGCACGATCAGCCCCATAGGCATGATGTTC
* * * *
70211201 GGCCATGTGTGACGCACGGTCAGCCCCATGGGCGTGATGTTC
1 GGCCGTGTGTGACGCACGATCAGCCCCATAGGCATGATGTTC
70211243 GGCCGTGTGT
1 GGCCGTGTGT
70211253 ACCCTGTACG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.22
Consensus pattern (42 bp):
GGCCGTGTGTGACGCACGATCAGCCCCATAGGCATGATGTTC
Found at i:70218402 original size:34 final size:34
Alignment explanation
Indices: 70218363--70218430 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
70218353 TTATAGGATG
70218363 ACATGCTAACTATGTTTTGTTTTTAGTGTATAGC
1 ACATGCTAACTATGTTTTGTTTTTAGTGTATAGC
*
70218397 ACATGCTAACTATGTTTTGTTTTTAGTGTTTAGC
1 ACATGCTAACTATGTTTTGTTTTTAGTGTATAGC
70218431 TGCAAAAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.49
Consensus pattern (34 bp):
ACATGCTAACTATGTTTTGTTTTTAGTGTATAGC
Found at i:70224041 original size:48 final size:47
Alignment explanation
Indices: 70223961--70224099 Score: 170
Period size: 48 Copynumber: 2.9 Consensus size: 47
70223951 TTTGGGTGAT
* * * * * *
70223961 ATGAGTGCCAGTGTAAGACCATGTCTGGGACATAGCATTGGCACTGAT
1 ATGAGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCAC-AAC
* *
70224009 GTGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACAAC
1 ATGAGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CACAAC
* *
70224057 ATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCA
1 ATGAGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
70224100 ATTCACCCTC
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
47 2 0.03
48 73 0.94
49 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
ATGAGTGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACAAC
Found at i:70237328 original size:48 final size:46
Alignment explanation
Indices: 70237257--70237482 Score: 227
Period size: 48 Copynumber: 4.7 Consensus size: 46
70237247 TATGAGTGCC
70237257 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATGTGTATGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATGTG-A-GCT
* * * *
70237305 AGTGTGAGACCATGTCTAGGACATGGCATCAGCATTGATGTGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA--TGTGAGCT
* * * * *
70237353 AGTCTAAAACCATGTCTGGGACATGGCATCGGCAATAAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-AT-TGATGTGAGCT
* * * * *
70237401 AGTGTAAGACCATATCTGGGACATGGCATCGGCCTCGACATATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTG--ATGTGAGCT
* * *
70237449 AGTGTAAGACCATGTTTAGAACATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
70237483 ATTCACCCTC
Statistics
Matches: 145, Mismatches: 27, Indels: 12
0.79 0.15 0.07
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 135 0.93
49 2 0.01
50 6 0.04
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATGTGAGCT
Found at i:70237461 original size:96 final size:97
Alignment explanation
Indices: 70237254--70237484 Score: 261
Period size: 96 Copynumber: 2.4 Consensus size: 97
70237244 TGATATGAGT
* * * *
70237254 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGATGTGTATGCTAGTGTGAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATAGACGAGTATGCTAGTGTAAGACCAT
* * ** * *
70237318 GTCTAGGACATGGCATCAGCATTGATGTGTGT
66 ATCTAGGACATGGCATCAGCATCGACATATGA
* * *
70237350 GCTAGTCTAAAACCATGTCTGGGACATGGCATCGGCAATAAGACGAG-A-GCTAGTGTAAGACCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAAT-AGACGAGTATGCTAGTGTAAGACCA
* * *
70237413 TATCTGGGACATGGCATCGGCCTCGACATATGA
65 TATCTAGGACATGGCATCAGCATCGACATATGA
* * *
70237446 GCCAGTGTAAGACCATGTTTAGAACATGGCATCGGCAAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAAT
70237485 TCACCCTCTT
Statistics
Matches: 111, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
96 104 0.94
97 3 0.03
98 4 0.04
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (97 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAATAGACGAGTATGCTAGTGTAAGACCAT
ATCTAGGACATGGCATCAGCATCGACATATGA
Found at i:70241099 original size:29 final size:29
Alignment explanation
Indices: 70241055--70241122 Score: 109
Period size: 29 Copynumber: 2.3 Consensus size: 29
70241045 AACACTTAGG
*
70241055 CTATTTTCCAAGCCTTATGTTGTCCTTAA
1 CTATTTTCCAAACCTTATGTTGTCCTTAA
70241084 CTATTTTCCAAACCTTATGTTGTCCTTAA
1 CTATTTTCCAAACCTTATGTTGTCCTTAA
* *
70241113 TTCTTTTCCA
1 CTATTTTCCA
70241123 TACGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.21, C:0.25, G:0.07, T:0.47
Consensus pattern (29 bp):
CTATTTTCCAAACCTTATGTTGTCCTTAA
Found at i:70242847 original size:50 final size:50
Alignment explanation
Indices: 70242783--70243169 Score: 398
Period size: 50 Copynumber: 7.7 Consensus size: 50
70242773 CTGGTACGCA
* *
70242783 TAGTAGCCTTCACTTAGTACTACACATGCGACCTATCAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATG
* * * * **
70242833 TAGTATCCTGCACTTACTACTACACATGTGACTTATCTATCTAATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATG
* * * * * * *
70242883 TAGTAGCCTGCACTTAGTAGTACACATGTGATCGAGGTTAA-CGGGTACGTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTA--TCAATCTGGTACATG
* * *
70242934 TAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATG
* * * * *
70242984 TAGTAGCCTGCAATTAGTACTACACACGTGACCTAACTATCTGATACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATG
* * ** * * ** * *
70243034 CAGTAGCCTGCACTTAGTACTACACATGTGGTCGAAACTATAGGGTACGTA
1 TAGTAGCCTGCACTTAGTACTACACATGT-GACCTATCAATCTGGTACATG
* * * * *
70243085 TAGTATCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATG
70243135 TAGTAGCCTGCACTTAGTACTACACATGTGACCTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTA
70243170 AAACTGTCTT
Statistics
Matches: 268, Mismatches: 65, Indels: 8
0.79 0.19 0.02
Matches are distributed among these distances:
49 3 0.01
50 189 0.71
51 74 0.28
52 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACATG
Found at i:70242958 original size:151 final size:151
Alignment explanation
Indices: 70242775--70243216 Score: 602
Period size: 151 Copynumber: 2.9 Consensus size: 151
70242765 GAAGCTCTCT
* * * *
70242775 GGTACGCATAGTAGCCTTCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTATC
1 GGTACGTATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * * *
70242840 CTGCACTTACTACTACACATGTGACTTATCTATCTAATACATGTAGTAGCCTGCACTTAGTAGTA
66 CTGCACTTAGTACTACACATGTGACCTAACTATCTAATACATGCAGTAGCCTGCACTTAGTACTA
***
70242905 CACATGTGATCGAGGTTA-ACG
131 CACATGTGATCGAAACTATA-G
* *
70242926 GGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCCGGTACACGTAGTAGC
1 GGTACGTATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * *
70242991 CTGCAATTAGTACTACACACGTGACCTAACTATCTGATACATGCAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACATGTGACCTAACTATCTAATACATGCAGTAGCCTGCACTTAGTACTA
*
70243056 CACATGTGGTCGAAACTATAG
131 CACATGTGATCGAAACTATAG
* *
70243077 GGTACGTATAGTATCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGC
1 GGTACGTATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
* * * *
70243142 CTGCACTTAGTACTACACATGTGACCTAAAACTGTCTTAAACACAT--AGTAGCCTACACATAGT
66 CTGCACTTAGTACTACACATGTGACCT--AACTATC-T-AATACATGCAGTAGCCTGCACTTAGT
70243205 ACTACACATGTG
127 ACTACACATGTG
70243217 TTCTTACAAT
Statistics
Matches: 258, Mismatches: 28, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
151 218 0.84
152 1 0.00
153 33 0.13
154 1 0.00
155 5 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (151 bp):
GGTACGTATAGTAGCCTACACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGC
CTGCACTTAGTACTACACATGTGACCTAACTATCTAATACATGCAGTAGCCTGCACTTAGTACTA
CACATGTGATCGAAACTATAG
Found at i:70243081 original size:101 final size:101
Alignment explanation
Indices: 70242783--70243169 Score: 395
Period size: 101 Copynumber: 3.9 Consensus size: 101
70242773 CTGGTACGCA
* * *
70242783 TAGTAGCCTTCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTATCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACATGTAGTAGCCTGCACTT
* * ***
70242848 ACTACTACACATGT-GACTTATCTATCTAATACATG
66 AGTACTACACATGTGGACCTATCTATCCGGTACATG
* * * * ** * * *
70242883 TAGTAGCCTGCACTTAGTAGTACACATGTGATCGAGGTTAA-CGGGTACGTATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTA--ACAATCTGGTACATGTAGTAGCCTGCAC
* * *
70242947 TTAGTACTACACATG-CGACCTATCAATCCGGTACACG
64 TTAGTACTACACATGTGGACCTATCTATCCGGTACATG
* * * * * *
70242984 TAGTAGCCTGCAATTAGTACTACACACGTGACCTAACTATCTGATACATGCAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACATGTAGTAGCCTGCACTT
* ** * ** * *
70243049 AGTACTACACATGTGGTCGAAACTATAGGGTACGTA
66 AGTACTACACATGTGGACCTATCTATCCGGTACATG
* * *
70243085 TAGTATCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACATGTAGTAGCCTGCACTT
70243150 AGTACTACACATGT-GACCTA
66 AGTACTACACATGTGGACCTA
70243170 AAACTGTCTT
Statistics
Matches: 229, Mismatches: 53, Indels: 10
0.78 0.18 0.03
Matches are distributed among these distances:
99 1 0.00
100 66 0.29
101 159 0.69
102 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACATGTAGTAGCCTGCACTT
AGTACTACACATGTGGACCTATCTATCCGGTACATG
Found at i:70243212 original size:52 final size:50
Alignment explanation
Indices: 70242772--70243216 Score: 329
Period size: 50 Copynumber: 8.8 Consensus size: 50
70242762 ACCGAAGCTC
* * * *
70242772 TCTGGTACGCATAGTAGCCTTCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
** * * * * * *
70242822 TCTGGTACATGTAGTATCCTGCACTTACTACTACACATGTGACTTATCTA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
** ** * * * * **
70242872 TCTAATACATGTAGTAGCCTGCACTTAGTAGTACACATGTGATCGAGGTTAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTA--ACAA
* ** * * *
70242924 -CGGGTACGTATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
* * * * * *
70242973 TCCGGTACACGTAGTAGCCTGCAATTAGTACTACACACGTGACCTAACTA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
* *** * * ** *
70243023 TCTGATACATGCAGTAGCCTGCACTTAGTACTACACATGTGGTCGAAACTA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGT-GACCTAACAA
** ** * *
70243074 TAGGGTACGTATAGTATCCTACACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
* *
70243124 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-AA
1 TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
* *
70243173 -CTGTCTTAAACACATAGTAGCCTACACATAGTACTACACATGTG
1 TCTG--GT--ACACATAGTAGCCTACACTTAGTACTACACATGTG
70243217 TTCTTACAAT
Statistics
Matches: 315, Mismatches: 72, Indels: 14
0.79 0.18 0.03
Matches are distributed among these distances:
48 3 0.01
49 5 0.02
50 199 0.63
51 74 0.23
52 34 0.11
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
Found at i:70245102 original size:10 final size:10
Alignment explanation
Indices: 70245075--70245133 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
70245065 TTAAATTGTA
70245075 AAAGATAAAT
1 AAAGATAAAT
70245085 ACAA-ATAAAT
1 A-AAGATAAAT
*
70245095 AAAGATAATT
1 AAAGATAAAT
*
70245105 AAAGATAATT
1 AAAGATAAAT
70245115 AAAGATAAAT
1 AAAGATAAAT
*
70245125 GAAGATAAA
1 AAAGATAAA
70245134 AGCTAAAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
9 2 0.05
10 40 0.91
11 2 0.05
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:70245917 original size:99 final size:101
Alignment explanation
Indices: 70245740--70245931 Score: 264
Period size: 99 Copynumber: 1.9 Consensus size: 101
70245730 TTCTCTTTTA
* * *
70245740 TTATTATTATTATTGCTTAAGAATACATTGAACCGTTTGACGCGAAGAGAGATGACAACCAAGCA
1 TTATTATTATTATTGCTTAAGAACACATCGAACCGTTTGACGCAAAGAGAGATGACAACCAAGCA
* *
70245805 CCCTACCCTGGTTACTCAGTCC-AACATACTCCTAAT
66 CCCCACCCCGGTTACTCAG-CCTAACATACTCCTAAT
* * * * *
70245841 TTATTA-TATT-TTTCTTAAGAACATATCGAACCTTTTGATGCAAAGAGAGATGACAGCCAAGCA
1 TTATTATTATTATTGCTTAAGAACACATCGAACCGTTTGACGCAAAGAGAGATGACAACCAAGCA
70245904 CCCCACCCCGGTTACTCAGCCTAACATA
66 CCCCACCCCGGTTACTCAGCCTAACATA
70245932 TTACTAAAAA
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
98 2 0.03
99 68 0.85
100 4 0.05
101 6 0.08
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (101 bp):
TTATTATTATTATTGCTTAAGAACACATCGAACCGTTTGACGCAAAGAGAGATGACAACCAAGCA
CCCCACCCCGGTTACTCAGCCTAACATACTCCTAAT
Found at i:70248528 original size:40 final size:40
Alignment explanation
Indices: 70248438--70248657 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 40
70248428 ACCCAAGTAT
* ** * *
70248438 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
70248476 CTTCGTGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
70248516 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
70248556 CTTTGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
70248596 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
70248636 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
70248658 CATCGAATAA
Statistics
Matches: 149, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
38 10 0.07
39 18 0.12
40 117 0.79
41 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:70256610 original size:40 final size:40
Alignment explanation
Indices: 70256536--70256746 Score: 221
Period size: 40 Copynumber: 5.3 Consensus size: 40
70256526 TCTTTGGGAT
** * *
70256536 TTAGCCC-GATATAACCACTCGCAC-AAGGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
70256574 TTAGCCCGGATATGGTCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * *
70256614 TTAGCCCAGATATAATCGCTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
* * * *
70256654 TTAGCCTGGATATAG-CAACTGGCACAAATGCCTTCAGATC
1 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTC
* * * **
70256694 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGAAC
1 TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
70256734 TTAGCCCGGATAT
1 TTAGCCCGGATAT
70256747 CATACGAATA
Statistics
Matches: 141, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
38 7 0.05
39 13 0.09
40 120 0.85
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTC
Found at i:70259934 original size:28 final size:28
Alignment explanation
Indices: 70259892--70259990 Score: 103
Period size: 28 Copynumber: 3.6 Consensus size: 28
70259882 GGAAGTGTCT
*
70259892 TGGTGGCTATGCCACAAATTATCTGATC
1 TGGTGGCTCTGCCACAAATTATCTGATC
* * *
70259920 TGGTGGCTCTACCACATA-TATCTGTTC
1 TGGTGGCTCTGCCACAAATTATCTGATC
**
70259947 TGGTGGCTCTGCCA-TGATTATCTGTATC
1 TGGTGGCTCTGCCACAAATTATCTG-ATC
* *
70259975 TGGTGACTCTGTCACA
1 TGGTGGCTCTGCCACA
70259991 TTATCTATTC
Statistics
Matches: 57, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
26 1 0.02
27 27 0.47
28 29 0.51
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.35
Consensus pattern (28 bp):
TGGTGGCTCTGCCACAAATTATCTGATC
Found at i:70259949 original size:27 final size:26
Alignment explanation
Indices: 70259892--70260003 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 26
70259882 GGAAGTGTCT
* *
70259892 TGGTGGCTATGCCACAAATTATCTGATC
1 TGGTGGCTCTGCCAC--ATTATCTGTTC
*
70259920 TGGTGGCTCTACCACATATATCTGTTC
1 TGGTGGCTCTGCCACAT-TATCTGTTC
*
70259947 TGGTGGCTCTGCCATGATTATCTGTATC
1 TGGTGGCTCTGCCA-CATTATCTGT-TC
* * *
70259975 TGGTGACTCTGTCACATTATCTATTC
1 TGGTGGCTCTGCCACATTATCTGTTC
70260001 TGG
1 TGG
70260004 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 7 0.10
27 36 0.50
28 29 0.40
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATTATCTGTTC
Found at i:70265874 original size:82 final size:81
Alignment explanation
Indices: 70265758--70265913 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
70265748 AAATTGTACA
* * * *
70265758 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
70265822 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70265839 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
70265904 TGCGAGTTGA
65 TGCGAATTGA
70265914 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70265881 original size:55 final size:52
Alignment explanation
Indices: 70265757--70265910 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
70265747 TAAATTGTAC
* *
70265757 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
70265810 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
70265865 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
70265911 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:70265915 original size:27 final size:27
Alignment explanation
Indices: 70265758--70265913 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
70265748 AAATTGTACA
*
70265758 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
70265785 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
70265812 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
70265839 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
70265867 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
70265894 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
70265914 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:70265924 original size:27 final size:27
Alignment explanation
Indices: 70265750--70265934 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
70265740 GCGGGATTAA
*
70265750 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
70265777 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
70265804 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
70265831 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
70265859 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
70265886 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
70265913 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
70265935 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:70265925 original size:82 final size:81
Alignment explanation
Indices: 70265750--70265934 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
70265740 GCGGGATTAA
* * * *
70265750 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
70265815 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
70265831 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
70265895 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
70265913 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
70265935 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:70273926 original size:82 final size:81
Alignment explanation
Indices: 70273810--70273965 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
70273800 AAATTGTACA
* * * *
70273810 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
70273874 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70273891 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
70273956 TGCGAGTTGA
65 TGCGAATTGA
70273966 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70273933 original size:55 final size:52
Alignment explanation
Indices: 70273809--70273962 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
70273799 TAAATTGTAC
* *
70273809 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
70273862 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
70273917 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
70273963 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:70273967 original size:27 final size:27
Alignment explanation
Indices: 70273810--70273965 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
70273800 AAATTGTACA
*
70273810 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
70273837 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
70273864 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
70273891 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
70273919 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
70273946 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
70273966 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:70273976 original size:27 final size:27
Alignment explanation
Indices: 70273802--70273986 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
70273792 GCGGGATTAA
*
70273802 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
70273829 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
70273856 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
70273883 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
70273911 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
70273938 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
70273965 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
70273987 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:70273977 original size:82 final size:81
Alignment explanation
Indices: 70273802--70273986 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
70273792 GCGGGATTAA
* * * *
70273802 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
70273867 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
70273883 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
70273947 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
70273965 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
70273987 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:70279986 original size:21 final size:21
Alignment explanation
Indices: 70279960--70280002 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
70279950 CAACCAGTGC
70279960 TATCCCTTACGTGGAAGCAGG
1 TATCCCTTACGTGGAAGCAGG
70279981 TATCCCTTACGTGGAAGCAGG
1 TATCCCTTACGTGGAAGCAGG
70280002 T
1 T
70280003 GCTATACTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (21 bp):
TATCCCTTACGTGGAAGCAGG
Found at i:70286156 original size:43 final size:42
Alignment explanation
Indices: 70286044--70286157 Score: 97
Period size: 43 Copynumber: 2.7 Consensus size: 42
70286034 AATGGTTTGT
* * * * **
70286044 ATGTAAGACCACGTCTGGGACGTTGACATCGTATTTTATTTT
1 ATGTAAGACCACGTCTGAGATGTTGGCATCGTATTTGATTAC
* ***
70286086 GTGTAAGACCTTTTCT-AGGATAG-TGGCATCGATATTTGATTAC
1 ATGTAAGACCACGTCTGA-GAT-GTTGGCATCG-TATTTGATTAC
70286129 ATGTAAGACCACGTCTGAGATGTTGGCAT
1 ATGTAAGACCACGTCTGAGATGTTGGCAT
70286158 TGTACAAGCT
Statistics
Matches: 53, Mismatches: 14, Indels: 9
0.70 0.18 0.12
Matches are distributed among these distances:
42 22 0.42
43 30 0.57
44 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (42 bp):
ATGTAAGACCACGTCTGAGATGTTGGCATCGTATTTGATTAC
Found at i:70299674 original size:55 final size:55
Alignment explanation
Indices: 70299614--70299747 Score: 223
Period size: 55 Copynumber: 2.4 Consensus size: 55
70299604 ACCATGGCAT
* * *
70299614 CGATATATGTGTGTGAGTAAGACTATGTTTTATACGTTGGCATTGATATGTACTC
1 CGATATATGTGTGTGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTACTC
70299669 CGATATATGTGTGTGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTACTC
1 CGATATATGTGTGTGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTACTC
* *
70299724 TGATATATGTGTGCGAGTAAGACC
1 CGATATATGTGTGTGAGTAAGACC
70299748 CTATCTGGGA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 74 1.00
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.36
Consensus pattern (55 bp):
CGATATATGTGTGTGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTACTC
Found at i:70304521 original size:26 final size:26
Alignment explanation
Indices: 70304490--70304597 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
70304480 TGAAATGCCC
*
70304490 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
70304516 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
70304542 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
70304568 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
70304594 ATCA
1 ATCA
70304598 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:70305024 original size:5 final size:5
Alignment explanation
Indices: 70305014--70305088 Score: 57
Period size: 5 Copynumber: 14.8 Consensus size: 5
70305004 ATATCCAAAC
* * *
70305014 AAAAT AAAAT AATAT ATAAT AAATAAT AAAAT AAAAT AAAAT AAAGT AATAA-
1 AAAAT AAAAT AAAAT AAAAT -AA-AAT AAAAT AAAAT AAAAT AAAAT AA-AAT
*
70305066 ATAAAT -AAAT AATA- AAAAT AAAA
1 A-AAAT AAAAT AAAAT AAAAT AAAA
70305089 ACAAAATTGG
Statistics
Matches: 55, Mismatches: 8, Indels: 14
0.71 0.10 0.18
Matches are distributed among these distances:
4 7 0.13
5 40 0.73
6 5 0.09
7 3 0.05
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (5 bp):
AAAAT
Found at i:70305034 original size:7 final size:7
Alignment explanation
Indices: 70305020--70305087 Score: 68
Period size: 7 Copynumber: 9.4 Consensus size: 7
70305010 AAACAAAATA
70305020 AAATAAT
1 AAATAAT
*
70305027 ATATAAT
1 AAATAAT
70305034 AAATAAT
1 AAATAAT
70305041 AAAATAA-
1 -AAATAAT
*
70305048 AATAAAAT
1 AA-ATAAT
70305056 AAAGTAAT
1 AAA-TAAT
70305064 AAATAAAT
1 AAAT-AAT
70305072 AAATAAT
1 AAATAAT
70305079 AAA-AAT
1 AAATAAT
70305085 AAA
1 AAA
70305088 AACAAAATTG
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
6 8 0.15
7 23 0.44
8 21 0.40
ACGTcount: A:0.74, C:0.00, G:0.01, T:0.25
Consensus pattern (7 bp):
AAATAAT
Found at i:70305043 original size:22 final size:22
Alignment explanation
Indices: 70305016--70305088 Score: 87
Period size: 22 Copynumber: 3.3 Consensus size: 22
70305006 ATCCAAACAA
70305016 AATAAAATAATATATAATAAAT
1 AATAAAATAATATATAATAAAT
* *
70305038 AATAAAATAAAATAAAATAAAGT
1 AATAAAATAATATATAATAAA-T
*
70305061 AAT-AAATAAATAAATAATAAA-
1 AATAAAAT-AATATATAATAAAT
70305082 AATAAAA
1 AATAAAA
70305089 ACAAAATTGG
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
21 3 0.07
22 26 0.60
23 14 0.33
ACGTcount: A:0.74, C:0.00, G:0.01, T:0.25
Consensus pattern (22 bp):
AATAAAATAATATATAATAAAT
Found at i:70305068 original size:27 final size:27
Alignment explanation
Indices: 70305014--70305088 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 27
70305004 ATATCCAAAC
*
70305014 AAAATAAAATAATATATAATAAATAAT
1 AAAATAAAATAAAATATAATAAATAAT
70305041 AAAATAAAATAAAATAAAGTAATAAATAAAT
1 AAAATAAAATAAAAT--A-TAATAAAT-AAT
70305072 AAATAATAAAAATAAAA
1 -AA-AAT-AAAATAAAA
70305089 ACAAAATTGG
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
27 14 0.35
29 1 0.03
30 8 0.20
31 3 0.08
32 2 0.05
33 3 0.08
34 9 0.22
ACGTcount: A:0.75, C:0.00, G:0.01, T:0.24
Consensus pattern (27 bp):
AAAATAAAATAAAATATAATAAATAAT
Done.