Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 216 of 325
Found at i:70305070 original size:4 final size:4
Alignment explanation
Indices: 70305015--70305087 Score: 51
Period size: 4 Copynumber: 16.8 Consensus size: 4
70305005 TATCCAAACA
70305015 AAAT AAAAT AATAT ATAAT AAAT -AAT AAAAT AAAAT AAAAT AAAGT -AAT
1 AAAT -AAAT AA-AT A-AAT AAAT AAAT -AAAT -AAAT -AAAT AAA-T AAAT
*
70305064 AAAT AAAT AAAT AATAA AAAT AAA
1 AAAT AAAT AAAT AA-AT AAAT AAA
70305088 AACAAAATTG
Statistics
Matches: 59, Mismatches: 2, Indels: 15
0.78 0.03 0.20
Matches are distributed among these distances:
3 4 0.07
4 27 0.46
5 27 0.46
6 1 0.02
ACGTcount: A:0.74, C:0.00, G:0.01, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:70309121 original size:41 final size:40
Alignment explanation
Indices: 70309076--70309209 Score: 139
Period size: 41 Copynumber: 3.2 Consensus size: 40
70309066 TAGGCCTAAC
70309076 ATAATACACTGACATAAAG-CTGCTAGGCAATAAAGCTCGAT
1 ATAATACACTG-CATAAAGCCTGCTAGGCAAT-AAGCTCGAT
* *
70309117 ATAATACACCGTCATAAAGTCTGCTAGGCAATAAGC-CTGAT
1 ATAATACACTG-CATAAAGCCTGCTAGGCAATAAGCTC-GAT
* *
70309158 ATCATACACCTGCATCAAAGCCTGC-AGGCAATAAGCTTGAT
1 ATAATACA-CTGCAT-AAAGCCTGCTAGGCAATAAGCTCGAT
*
70309199 ATTATATCACT
1 ATAATA-CACT
70309210 ATTACAAAGT
Statistics
Matches: 80, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
40 1 0.01
41 55 0.69
42 24 0.30
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (40 bp):
ATAATACACTGCATAAAGCCTGCTAGGCAATAAGCTCGAT
Found at i:70312359 original size:19 final size:18
Alignment explanation
Indices: 70312322--70312365 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
70312312 ATACATACAG
70312322 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
70312339 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
70312358 TACTAATT
1 TAATAATT
70312366 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:70325938 original size:16 final size:15
Alignment explanation
Indices: 70325917--70325958 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
70325907 TGAAACAGAG
70325917 AATCCAAGAATAAAGA
1 AATCCAAG-ATAAAGA
70325933 AATCCAAGATAAAGA
1 AATCCAAGATAAAGA
*
70325948 AATCCATGATA
1 AATCCAAGATA
70325959 CGAGAATCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 17 0.68
16 8 0.32
ACGTcount: A:0.57, C:0.14, G:0.12, T:0.17
Consensus pattern (15 bp):
AATCCAAGATAAAGA
Found at i:70328788 original size:49 final size:49
Alignment explanation
Indices: 70328716--70328897 Score: 265
Period size: 49 Copynumber: 3.7 Consensus size: 49
70328706 CTGGTACGCA
* *
70328716 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACG
* * * *
70328765 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCAGGTACACG
* *
70328816 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACG
*
70328865 TAGTAGCCTACACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
70328898 TCACAATAGC
Statistics
Matches: 117, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
49 72 0.62
50 6 0.05
51 39 0.33
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCAGGTACACG
Found at i:70328870 original size:100 final size:100
Alignment explanation
Indices: 70328697--70328895 Score: 335
Period size: 100 Copynumber: 2.0 Consensus size: 100
70328687 CACTTGCAGC
* *
70328697 CGAAGCTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGATAC
1 CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATAC
*
70328762 ACGTAGTAGCCTGCACTTAGTACTACACACGTGAT
66 ACGTAGTAGCCTACACTTAGTACTACACACGTGAT
* * *
70328797 CGAAGTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTAC
1 CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATAC
*
70328862 ACGTAGTAGCCTACACTTAGTACTACACATGTGA
66 ACGTAGTAGCCTACACTTAGTACTACACACGTGA
70328896 CCTCACAATA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 92 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (100 bp):
CGAAGCTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATAC
ACGTAGTAGCCTACACTTAGTACTACACACGTGAT
Found at i:70336922 original size:10 final size:10
Alignment explanation
Indices: 70336895--70336943 Score: 73
Period size: 10 Copynumber: 4.9 Consensus size: 10
70336885 TTAAATTGTA
70336895 AAAGATAAAT
1 AAAGATAAAT
70336905 ACAA-ATAAAT
1 A-AAGATAAAT
*
70336915 AAAGATAATT
1 AAAGATAAAT
70336925 AAAGATAAAT
1 AAAGATAAAT
70336935 AAAGATAAA
1 AAAGATAAA
70336944 AGCTAAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 2 0.06
10 31 0.89
11 2 0.06
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:70337254 original size:31 final size:31
Alignment explanation
Indices: 70337216--70337281 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
70337206 TAAACATATA
70337216 ATTAATACATAAAAATATGTCATTCTAGTGT
1 ATTAATACATAAAAATATGTCATTCTAGTGT
70337247 ATTAATACATAAAAATATGTCATTCTAGTGT
1 ATTAATACATAAAAATATGTCATTCTAGTGT
70337278 ATTA
1 ATTA
70337282 TTACCGATAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.39
Consensus pattern (31 bp):
ATTAATACATAAAAATATGTCATTCTAGTGT
Found at i:70340822 original size:10 final size:10
Alignment explanation
Indices: 70340803--70340851 Score: 55
Period size: 10 Copynumber: 4.8 Consensus size: 10
70340793 AACTCTATTG
70340803 AAAA-TAATC
1 AAAATTAATC
70340812 AAAATTAATC
1 AAAATTAATC
*
70340822 AAAATTTAATAT
1 AAAA-TTAAT-C
*
70340834 AAAATTAATT
1 AAAATTAATC
70340844 AAAATTAA
1 AAAATTAA
70340852 ACATGTTAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
9 4 0.11
10 18 0.50
11 10 0.28
12 4 0.11
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAATTAATC
Found at i:70342021 original size:31 final size:31
Alignment explanation
Indices: 70341978--70342041 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
70341968 CCTTTTCATA
70341978 TTTCATAATTCATAACACTGGGCCAAAGCCT
1 TTTCATAATTCATAACACTGGGCCAAAGCCT
* ** *
70342009 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCAAAGCCT
70342040 TT
1 TT
70342042 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCAAAGCCT
Found at i:70342282 original size:24 final size:24
Alignment explanation
Indices: 70342246--70342397 Score: 236
Period size: 24 Copynumber: 6.4 Consensus size: 24
70342236 CTGGAGGCCT
*
70342246 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
70342271 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
70342295 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
70342318 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
70342342 AGCCCTTTTGATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
70342366 AACCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
70342389 AGCCCTTTT
1 AGCCCTTTT
70342398 GCACTTCCTC
Statistics
Matches: 118, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
23 43 0.36
24 71 0.60
25 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:70342336 original size:71 final size:71
Alignment explanation
Indices: 70342246--70342398 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 71
70342236 CTGGAGGCCT
* *
70342246 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCC-CTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAACCCTTTAATAACTG
70342311 GGGCATA
65 GGGCATA
* * *
70342318 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAATTGGGGCATAAACCCTTTAATAACTGG
1 AGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAACCCTTTAATAACTGG
70342383 GGCATA
66 GGCATA
70342389 AGCCCTTTTG
1 AGCCCTTTTG
70342399 CACTTCCTCC
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 72 0.95
72 4 0.05
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (71 bp):
AGCCCTTTTGATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAACCCTTTAATAACTGG
GGCATA
Found at i:70342398 original size:47 final size:48
Alignment explanation
Indices: 70342246--70342397 Score: 229
Period size: 47 Copynumber: 3.2 Consensus size: 48
70342236 CTGGAGGCCT
70342246 AGCCTCTTTTAATAACTGGGGCA-AAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAA-CCCTTTTAATAACTGGGGCATA
* *
70342295 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAACCCTTTTAATAACTGGGGCATA
* *
70342342 AGCCCTTTTGATAATTGGGGCATAAACCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAACCCTTTTAATAACTGGGGCATA
70342389 AGCCCTTTT
1 AGCCCTTTT
70342398 GCACTTCCTC
Statistics
Matches: 95, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
47 68 0.72
48 23 0.24
49 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAACCCTTTTAATAACTGGGGCATA
Found at i:70342469 original size:9 final size:9
Alignment explanation
Indices: 70342455--70342511 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
70342445 ATCTCATGTG
70342455 CATATCATA
1 CATATCATA
*
70342464 CATATCATGTG
1 CATATCA--TA
70342475 CATATCATA
1 CATATCATA
* *
70342484 CATGTCATGTG
1 CATATCA--TA
70342495 CATATCATA
1 CATATCATA
70342504 CATATCAT
1 CATATCAT
70342512 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:70342471 original size:20 final size:20
Alignment explanation
Indices: 70342443--70342513 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
70342433 GCATTTATGA
*
70342443 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
70342463 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
70342483 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
70342503 ACATATCATGT
1 ACATATCATGT
70342514 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:70342478 original size:11 final size:11
Alignment explanation
Indices: 70342448--70342502 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
70342438 TATGAACATC
70342448 TCATGTGCATA
1 TCATGTGCATA
*
70342459 TCA--TACATA
1 TCATGTGCATA
70342468 TCATGTGCATA
1 TCATGTGCATA
* *
70342479 TCA--TACATG
1 TCATGTGCATA
70342488 TCATGTGCATA
1 TCATGTGCATA
70342499 TCAT
1 TCAT
70342503 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:70342588 original size:24 final size:24
Alignment explanation
Indices: 70342550--70342596 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
70342540 ATATATAAAC
* *
70342550 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAATGGTCATTTTA
70342574 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
70342597 CATGTTATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (24 bp):
CCTAGGGGCAAAATGGTCATTTTA
Found at i:70351295 original size:49 final size:49
Alignment explanation
Indices: 70351236--70351394 Score: 277
Period size: 49 Copynumber: 3.3 Consensus size: 49
70351226 TATTTGAATA
* * *
70351236 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
70351285 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
70351332 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
70351381 AATGTGAAAGTGTA
1 AATGTGAAAGTGTA
70351395 GCCGAATGGC
Statistics
Matches: 105, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
47 44 0.42
49 61 0.58
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:70351320 original size:47 final size:47
Alignment explanation
Indices: 70351236--70351631 Score: 424
Period size: 47 Copynumber: 8.6 Consensus size: 47
70351226 TATTTGAATA
*
70351236 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
70351285 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
70351332 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
70351381 AATGTGAAAGTG----TA-GCCGA-ATGGCC-AAT-G-TGATGAATG-TG
1 AATGTGAAAGTGTATATATG-TGATAAGGCCTAATGGCCGATG--TGATG
* * * *
70351421 AAAGT----GTATATATATGTGGTAAGGCCTAATGGTCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
70351464 AATGTAAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
70351511 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
70351558 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
70351605 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
70351632 TCCCGAAGGG
Statistics
Matches: 296, Mismatches: 32, Indels: 40
0.80 0.09 0.11
Matches are distributed among these distances:
36 2 0.01
39 3 0.01
40 10 0.03
41 11 0.04
42 11 0.04
43 11 0.04
44 4 0.01
47 185 0.62
49 59 0.20
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:70351400 original size:34 final size:34
Alignment explanation
Indices: 70351361--70351428 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
70351351 ATGTGATAAG
70351361 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
70351395 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
70351429 TATATATGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (34 bp):
GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:70351408 original size:83 final size:83
Alignment explanation
Indices: 70351312--70351477 Score: 287
Period size: 83 Copynumber: 2.0 Consensus size: 83
70351302 ATGTGATAAG
70351312 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGT
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGT
*
70351377 GATGAATGTGAAAGTGTA
66 GATGAATGTAAAAGTGTA
* * * *
70351395 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGGTAAGGCCTAATGGTCGATGT
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGT
70351460 GATGAATGTAAAAGTGTA
66 GATGAATGTAAAAGTGTA
70351478 TATATGTGAT
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 78 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (83 bp):
GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGT
GATGAATGTAAAAGTGTA
Found at i:70351460 original size:179 final size:177
Alignment explanation
Indices: 70351236--70351571 Score: 573
Period size: 179 Copynumber: 1.9 Consensus size: 177
70351226 TATTTGAATA
*
70351236 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTAAAAGTGTATA
*
70351301 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGA
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGA
*
70351366 ATGGCCAATGTGATGAATGTGAAAGTGTAGCCGAATGGCCAATGTGATG
129 ATGGCCAATATGATGAATGTGAAAGTGTAGCCGAATGGCCAATGTGATG
* *
70351415 AATGTGAAAGTGTATATATATGTGGTAAGGCCTAATGGTCGATGTGATGAATGTAAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTAAAAGTGTATA
* * *
70351480 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
*
70351545 GGCCGATATGATGAATGTGAAAGTGTA
131 GGCCAATATGATGAATGTGAAAGTGTA
70351572 TATATGTGAC
Statistics
Matches: 148, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
177 46 0.31
179 102 0.69
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (177 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTAAAAGTGTATA
TATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCAATATGATGAATGTGAAAGTGTAGCCGAATGGCCAATGTGATG
Found at i:70351507 original size:130 final size:129
Alignment explanation
Indices: 70351277--70351631 Score: 390
Period size: 130 Copynumber: 2.6 Consensus size: 129
70351267 CTAATGGACG
*
70351277 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAG
*
70351342 TGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAGCCGAATGGCCA
66 TG-ATATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTAGCCGAATGGCCA
* * * *
70351407 ATGTGATGAATGTGAAAGTGTATATATATGTGGTAAGGCCTAATGGTCGATGTGATGAATGTAAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAA
* *
70351472 AGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
64 AGTGATATATATGTGATAAGGCCGAATAGCCAATGTGATGAA--T----GTG-A-A-A-GTG-T-
* *
70351536 AGGCCTAATGGCCG
117 A-GCCGAATGGCCA
* * * * * * *
70351550 ATATGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAG
*
70351615 TG-TATAAATGTGATAAG
66 TGATATATATGTGATAAG
70351632 TCCCGAAGGG
Statistics
Matches: 188, Mismatches: 22, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
130 54 0.29
132 43 0.23
136 3 0.02
137 1 0.01
138 1 0.01
139 1 0.01
140 3 0.02
141 52 0.28
142 1 0.01
143 29 0.15
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (129 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTAAAAG
TGATATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTAGCCGAATGGCCA
Found at i:70353917 original size:40 final size:40
Alignment explanation
Indices: 70353856--70354255 Score: 583
Period size: 40 Copynumber: 10.1 Consensus size: 40
70353846 AGGTCTCGAC
70353856 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
70353895 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
70353935 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
70353975 GATGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
70354015 GATGTA-CTCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATC-CGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
70354055 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
70354095 GATGTATCCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
70354135 GATGTATCC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
70354174 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCATGCTAGT
* * * * *
70354214 GTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
70354254 GA
1 GA
70354256 CGTGTATTCG
Statistics
Matches: 327, Mismatches: 28, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
39 40 0.12
40 284 0.87
41 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:70356809 original size:49 final size:49
Alignment explanation
Indices: 70356753--70356911 Score: 268
Period size: 49 Copynumber: 3.3 Consensus size: 49
70356743 TATTTGAATA
* * *
70356753 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
70356802 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
70356849 AATATGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
70356898 AATGTGAAAGTGTA
1 AATGTGAAAGTGTA
70356912 GCCGAATGGC
Statistics
Matches: 103, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
47 43 0.42
49 60 0.58
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.29
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:70356837 original size:47 final size:47
Alignment explanation
Indices: 70356753--70357148 Score: 451
Period size: 47 Copynumber: 8.6 Consensus size: 47
70356743 TATTTGAATA
*
70356753 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
70356802 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
70356849 AATATGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
70356898 AATGTGAAAGTG----TA-GCCGA-ATGGCC-AAT-G-TGATGAATG-TG
1 AATGTGAAAGTGTATATATG-TGATAAGGCCTAATGGCCGATG--TGATG
* *
70356938 AAAGT----GTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
70356981 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
70357028 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
70357075 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
70357122 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
70357149 TCCCGAAGGG
Statistics
Matches: 300, Mismatches: 28, Indels: 40
0.82 0.08 0.11
Matches are distributed among these distances:
36 2 0.01
39 3 0.01
40 11 0.04
41 11 0.04
42 11 0.04
43 11 0.04
44 4 0.01
47 189 0.63
49 58 0.19
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:70356917 original size:34 final size:34
Alignment explanation
Indices: 70356878--70356945 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
70356868 ATGTGATAAG
70356878 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
70356912 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
70356946 TATATATGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (34 bp):
GCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:70356927 original size:83 final size:83
Alignment explanation
Indices: 70356829--70356994 Score: 305
Period size: 83 Copynumber: 2.0 Consensus size: 83
70356819 ATGTGATAAG
70356829 GCCGAATGGCCAATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGT
1 GCCGAATGGCCAATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGT
70356894 GATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTA
* * *
70356912 GCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGT
1 GCCGAATGGCCAATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGT
70356977 GATGAATGTGAAAGTGTA
66 GATGAATGTGAAAGTGTA
70356995 TATATGTGAT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 80 1.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.27
Consensus pattern (83 bp):
GCCGAATGGCCAATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGT
GATGAATGTGAAAGTGTA
Found at i:70356977 original size:179 final size:177
Alignment explanation
Indices: 70356753--70357088 Score: 591
Period size: 179 Copynumber: 1.9 Consensus size: 177
70356743 TATTTGAATA
70356753 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATA
*
70356818 TATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCGA
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATATGAAAGTG--TATATATGTGATAAGGCCGA
70356883 ATGGCCAATGTGATGAATGTGAAAGTGTAGCCGAATGGCCAATGTGATG
129 ATGGCCAATGTGATGAATGTGAAAGTGTAGCCGAATGGCCAATGTGATG
*
70356932 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATA
* * * *
70356997 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCGAATAGCCAATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCGAAT
*
70357062 GGCCGATGTGATGAATGTGAAAGTGTA
131 GGCCAATGTGATGAATGTGAAAGTGTA
70357089 TATATGTGAC
Statistics
Matches: 150, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
177 47 0.31
179 103 0.69
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (177 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGACGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATAGCCAATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCAATGTGATGAATGTGAAAGTGTAGCCGAATGGCCAATGTGATG
Found at i:70359146 original size:31 final size:31
Alignment explanation
Indices: 70359103--70359166 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
70359093 CCTTTTCATA
70359103 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
70359134 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
70359165 TT
1 TT
70359167 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:70359405 original size:24 final size:24
Alignment explanation
Indices: 70359373--70359501 Score: 188
Period size: 24 Copynumber: 5.4 Consensus size: 24
70359363 CTGGAGGCCT
*
70359373 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
*
70359398 ATCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
70359422 AGCCATTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
70359446 AGCCTTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
70359470 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
70359493 AGCCCTTTT
1 AGCCCTTTT
70359502 GCACTTCCTC
Statistics
Matches: 95, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
23 22 0.23
24 70 0.74
25 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:70359575 original size:20 final size:20
Alignment explanation
Indices: 70359547--70359597 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
70359537 GCATTTATGA
*
70359547 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
70359567 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
70359587 ACATATCATGT
1 ACATATCATGT
70359598 TTATCAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:70359676 original size:25 final size:24
Alignment explanation
Indices: 70359634--70359681 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
70359624 ATATATAAAC
* * *
70359634 CCTAGGGGTATAATGGTCACTTTTA
1 CCTAGGGGCAAAAAGGTCA-TTTTA
70359659 CCTAGGGGCAAAAAGGTCATTTT
1 CCTAGGGGCAAAAAGGTCATTTT
70359682 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAAAGGTCATTTTA
Found at i:70367870 original size:13 final size:13
Alignment explanation
Indices: 70367852--70367879 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
70367842 TTTTAAATAT
70367852 TTATAATTAATCG
1 TTATAATTAATCG
70367865 TTATAATTAATCG
1 TTATAATTAATCG
70367878 TT
1 TT
70367880 CTTGAAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (13 bp):
TTATAATTAATCG
Found at i:70392614 original size:39 final size:40
Alignment explanation
Indices: 70392504--70392725 Score: 348
Period size: 39 Copynumber: 5.7 Consensus size: 40
70392494 AGCCTCACTA
70392504 GCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTC
70392544 GCACAAATGCCTT-GGG-CTTAGCCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
70392582 GCACAAATGCCTTC-GGACTTAGCCCGGAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
70392621 GCACAAATGCCTTC-GGACTTAGCCC-GAATTAGTAACTC
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
* * *
70392659 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAATCACTA
1 GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
* *
70392699 GCACAAATGTCTTCGGGACTTACCCCG
1 GCACAAATGCCTTCGGGACTTAGCCCG
70392726 TTAGCATCCG
Statistics
Matches: 172, Mismatches: 5, Indels: 10
0.92 0.03 0.05
Matches are distributed among these distances:
38 61 0.35
39 63 0.37
40 48 0.28
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTC
Found at i:70400079 original size:93 final size:93
Alignment explanation
Indices: 70399964--70400134 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
70399954 GCCCCTAAGT
*
70399964 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
70400028 ACGAGTTCGGATGCCTGGTTACATCTCAC
65 ACGAGTTCGGATGCCTGGTTACATCTCAC
* * *
70400057 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
70400122 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70400135 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTGGTTACATCTCAC
Found at i:70400129 original size:46 final size:46
Alignment explanation
Indices: 70399959--70400131 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
70399949 AATCCGCCCC
* * *
70399959 TAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCA
* * *
70400005 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTGGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CAT--TTGCATCCA
* *
70400053 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
70400098 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70400132 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 6 0.06
46 58 0.54
47 29 0.27
48 4 0.04
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:70402671 original size:15 final size:15
Alignment explanation
Indices: 70402651--70402728 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
70402641 CATAGTATCG
*
70402651 TATCCTGGGTTTCTT
1 TATCCTGGATTTCTT
**
70402666 TATCCTGGATCACTT
1 TATCCTGGATTTCTT
*
70402681 TATTCTGGATTTCTT
1 TATCCTGGATTTCTT
* *
70402696 TATTCC-GGGTTTCTC
1 TA-TCCTGGATTTCTT
*
70402711 TATCTTGGATTTCTT
1 TATCCTGGATTTCTT
70402726 TAT
1 TAT
70402729 TCAGTTTTCT
Statistics
Matches: 49, Mismatches: 12, Indels: 4
0.75 0.18 0.06
Matches are distributed among these distances:
14 2 0.04
15 45 0.92
16 2 0.04
ACGTcount: A:0.13, C:0.19, G:0.15, T:0.53
Consensus pattern (15 bp):
TATCCTGGATTTCTT
Found at i:70405177 original size:46 final size:46
Alignment explanation
Indices: 70405124--70405299 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
70405114 TATTTGGGCA
70405124 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
70405170 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
70405215 CATCCGAAATCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
70405263 GCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70405300 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.58
47 28 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70405279 original size:93 final size:93
Alignment explanation
Indices: 70405120--70405291 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
70405110 GGGATATTTG
* * * *
70405120 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGGCCGAACTCGTTGAG
70405185 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* *
70405213 GGCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGGCTGAGCTCGTTGAG
1 GGCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGGCCGAACTCGTTGAG
*
70405278 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
70405292 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAAATCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGGCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:70407824 original size:68 final size:68
Alignment explanation
Indices: 70407744--70407879 Score: 272
Period size: 68 Copynumber: 2.0 Consensus size: 68
70407734 ATCAAACATG
70407744 GGGTAAAAATATGTATAATTTATGGTTTATCAATTGGACATTGGACATTTTATTTTGGATGGTTT
1 GGGTAAAAATATGTATAATTTATGGTTTATCAATTGGACATTGGACATTTTATTTTGGATGGTTT
70407809 TAT
66 TAT
70407812 GGGTAAAAATATGTATAATTTATGGTTTATCAATTGGACATTGGACATTTTATTTTGGATGGTTT
1 GGGTAAAAATATGTATAATTTATGGTTTATCAATTGGACATTGGACATTTTATTTTGGATGGTTT
70407877 TAT
66 TAT
70407880 AATAATTATG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.29, C:0.04, G:0.21, T:0.46
Consensus pattern (68 bp):
GGGTAAAAATATGTATAATTTATGGTTTATCAATTGGACATTGGACATTTTATTTTGGATGGTTT
TAT
Found at i:70412808 original size:45 final size:45
Alignment explanation
Indices: 70412744--70412917 Score: 152
Period size: 45 Copynumber: 3.9 Consensus size: 45
70412734 AATTTGATTC
* *
70412744 AAATGAGTAAGACCATAGTTGAAAGATGCTATGGCATCAGGAAAA
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAGGAAAA
* * * * * ***
70412789 AAATGAGTAAGACCATAGTTGAAAGACACTATGGAACCATGACGG
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAGGAAAA
* * * * *
70412834 AAGTTAGTAAGACCATGGCTGAAAGATGCTATGGCATCATGG-TAA
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCA-GGAAAA
* * * * *
70412879 ATAGGACTAAGACCATAGCTAAAAGACGTTATGGCATCA
1 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCA
70412918 TTTGATAGTT
Statistics
Matches: 99, Mismatches: 29, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
45 98 0.99
46 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAGGAAAA
Found at i:70419927 original size:79 final size:81
Alignment explanation
Indices: 70419825--70420009 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
70419815 GCTCCTCGTT
* *
70419825 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
70419888 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
70419905 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
70419969 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
70419985 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70420010 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:70420009 original size:40 final size:40
Alignment explanation
Indices: 70419825--70420009 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
70419815 GCTCCTCGTT
* *
70419825 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
70419865 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
70419905 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
70419944 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
70419985 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70420010 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 80 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:70427813 original size:79 final size:81
Alignment explanation
Indices: 70427711--70427895 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
70427701 GCTCCTCGTT
* *
70427711 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
70427774 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
70427791 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
70427855 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
*
70427871 TAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70427896 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:70427895 original size:40 final size:40
Alignment explanation
Indices: 70427711--70427895 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
70427701 GCTCCTCGTT
* *
70427711 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
70427751 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
70427791 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
70427830 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
*
70427871 TAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70427896 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 80 0.64
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:70441978 original size:38 final size:38
Alignment explanation
Indices: 70441935--70442010 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
70441925 CTAGTTATTT
70441935 TATCTCATCACCTTAAGCACATATAACAACTAAAAGTA
1 TATCTCATCACCTTAAGCACATATAACAACTAAAAGTA
70441973 TATCTCATCACCTTAAGCACATATAACAACTAAAAGTA
1 TATCTCATCACCTTAAGCACATATAACAACTAAAAGTA
70442011 CACCCATTTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (38 bp):
TATCTCATCACCTTAAGCACATATAACAACTAAAAGTA
Found at i:70460062 original size:57 final size:57
Alignment explanation
Indices: 70459974--70460089 Score: 232
Period size: 57 Copynumber: 2.0 Consensus size: 57
70459964 ACGTTCTATA
70459974 ATCTCATACGGCCCAATAAATCTTAGACTCAATTTGCCTTTACAACCAAATCTGTGT
1 ATCTCATACGGCCCAATAAATCTTAGACTCAATTTGCCTTTACAACCAAATCTGTGT
70460031 ATCTCATACGGCCCAATAAATCTTAGACTCAATTTGCCTTTACAACCAAATCTGTGT
1 ATCTCATACGGCCCAATAAATCTTAGACTCAATTTGCCTTTACAACCAAATCTGTGT
70460088 AT
1 AT
70460090 TTTCTTCCAC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (57 bp):
ATCTCATACGGCCCAATAAATCTTAGACTCAATTTGCCTTTACAACCAAATCTGTGT
Found at i:70462418 original size:3 final size:3
Alignment explanation
Indices: 70462402--70462489 Score: 62
Period size: 3 Copynumber: 29.3 Consensus size: 3
70462392 TTATATCATT
*
70462402 TTA TTA -TA TATA TTA TTCA TTA -TA TTA TTT TTA TT- TT- TTA TTA
1 TTA TTA TTA T-TA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
70462445 TATA TTA -TA TTA -TA TTA TTA TTTA TTA TTTA TAA TTTA TTA TTA T
1 T-TA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA -TTA TTA TTA T
70462490 GTACAATTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 22
0.73 0.04 0.23
Matches are distributed among these distances:
2 12 0.17
3 41 0.59
4 17 0.24
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:70462485 original size:57 final size:59
Alignment explanation
Indices: 70462324--70462489 Score: 141
Period size: 57 Copynumber: 2.8 Consensus size: 59
70462314 ATATAAAAAA
* *
70462324 TTATTATATA-TATA-TATATTATTTTTTCA-TATTT-TATTTTACATATTATTTATATGCT
1 TTATTATATATTATATTATATTATTATTT-ATTATTTATA-TTTA-TTATTATTTATATGCT
* * * * * * *
70462382 TTATAATATGTTATATCATTTTATTATATATATTATTCAT-TATATTATT-TTTAT-T-TT
1 TTATTATATATTATATTATATTATTAT-T-TATTATTTATATTTATTATTATTTATATGCT
70462439 TTATTATATATTATATTATATTATTATTTATTATTTATAATTTATTATTAT
1 TTATTATATATTATATTATATTATTATTTATTATTTAT-ATTTATTATTAT
70462490 GTACAATTTT
Statistics
Matches: 84, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
55 9 0.11
56 1 0.01
57 32 0.38
58 10 0.12
59 9 0.11
60 12 0.14
61 5 0.06
62 5 0.06
63 1 0.01
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (59 bp):
TTATTATATATTATATTATATTATTATTTATTATTTATATTTATTATTATTTATATGCT
Found at i:70462498 original size:24 final size:24
Alignment explanation
Indices: 70462449--70462498 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
70462439 TTATTATATA
* **
70462449 TTATATTATATTATTATTTATTAT
1 TTATATTATATTATTATGTACAAT
70462473 TTATAATT-TATTATTATGTACAAT
1 TTAT-ATTATATTATTATGTACAAT
70462497 TT
1 TT
70462499 TTAAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (24 bp):
TTATATTATATTATTATGTACAAT
Found at i:70474424 original size:44 final size:44
Alignment explanation
Indices: 70474367--70475213 Score: 1051
Period size: 44 Copynumber: 19.4 Consensus size: 44
70474357 ACCGATATTG
* *
70474367 GATTTGACGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * *
70474411 GATTTGGCATCTCTGTATTAACAGAGAGTAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * * * *
70474455 CATTTGGCGTCTCTGTATTGACAGAGGGTAGATTGAAGATAACA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
*
70474499 GATTTGGCGTCTCTGTATTGACAGAAAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * *
70474543 TATTTGGCGTCTCTGTATTGACAGAGGGCAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
*
70474587 GATTTGGCGTCTCTGTATTGACAGAAAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
70474631 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * * *
70474675 GATTTGGCGTCTCTGTATCGAC-GGGAAGCAGATCAAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAG-AGCAGATCGAAGATAGCA
* * *
70474719 GATTTGGTGTCTCTGTATTGACAGAGAGCAGATTGAAGATAGAA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* *
70474763 GATTTGGCGTCTTTGTATTGACAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * * * *
70474807 GATTTGGCGTCTCTGTATCGACGGGGAGCAGATCAAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* *
70474851 GATTTGGTGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
*
70474895 GATTTGGCGTCTCTGTATTGATAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * * * * * *
70474939 GATTTGGCGTCTCTATATCGACAGGGAGTAGATCAAAGATTGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* *
70474983 GATTTGGTGTCTCTTTATTGACAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * ** * * * *
70475027 GATTTGGCATCTCTGTATGGATGGGGAACAAATCGAAGATAGTA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * * * * * *
70475071 GATCTGACAT-TCT-T-GT-ACCGA-AGCAGACCGAATATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
* * *
70475110 GATTTGGCGTCTCTGTATTGACAGAAAGCATATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
** *
70475154 GATTTGGTTTCTCTGTATTGACAGAG-GACAGATCAAAGATAGCA
1 GATTTGGCGTCTCTGTATTGACAGAGAG-CAGATCGAAGATAGCA
* *
70475198 GATTTAGCATCTCTGT
1 GATTTGGCGTCTCTGT
70475214 GCTTCATGGG
Statistics
Matches: 688, Mismatches: 107, Indels: 16
0.85 0.13 0.02
Matches are distributed among these distances:
39 20 0.03
40 5 0.01
41 1 0.00
42 2 0.00
43 10 0.01
44 648 0.94
45 2 0.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTATTGACAGAGAGCAGATCGAAGATAGCA
Found at i:70476703 original size:27 final size:25
Alignment explanation
Indices: 70476673--70476728 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 25
70476663 ATTTTTAAAT
*
70476673 TTTTAAATTTTTTATACAATTTATTTA
1 TTTTAAATATTTTATA-AA-TTATTTA
*
70476700 TTTTAAATATTTTATATATTATTTA
1 TTTTAAATATTTTATAAATTATTTA
70476725 TTTT
1 TTTT
70476729 TACTATAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 11 0.41
26 1 0.04
27 15 0.56
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (25 bp):
TTTTAAATATTTTATAAATTATTTA
Found at i:70476712 original size:29 final size:28
Alignment explanation
Indices: 70476671--70476727 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
70476661 TCATTTTTAA
* *
70476671 ATTTTTAAATTTTTTATACAATTTATTT
1 ATTTTAAAATTTTATATACAATTTATTT
**
70476699 ATTTTAAATATTTTATATATTATTTATTT
1 ATTTTAAA-ATTTTATATACAATTTATTT
70476728 TTACTATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (28 bp):
ATTTTAAAATTTTATATACAATTTATTT
Found at i:70476835 original size:36 final size:32
Alignment explanation
Indices: 70476795--70476910 Score: 105
Period size: 36 Copynumber: 3.5 Consensus size: 32
70476785 TTATTTTACA
70476795 TATTATTTATATGCTTTATAATATATTATATCATTT
1 TATTATTTATAT--TTTATAATATATTAT-T-ATTT
*
70476831 TATTATATATATTATTCATATATATATT-TTATTT
1 TATTATTTATATT-TT-ATA-ATATATTATTATTT
* *
70476865 T-TTA-TTATATATTATATTATATTATTA-TT
1 TATTATTTATATTTTATAATATATTATTATTT
*
70476894 TATTATTTATAATTTAT
1 TATTATTTATATTTTAT
70476911 TAGTATGTAC
Statistics
Matches: 68, Mismatches: 6, Indels: 17
0.75 0.07 0.19
Matches are distributed among these distances:
29 9 0.13
30 9 0.13
31 11 0.16
32 5 0.07
33 3 0.04
34 6 0.09
35 3 0.04
36 15 0.22
37 7 0.10
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (32 bp):
TATTATTTATATTTTATAATATATTATTATTT
Found at i:70476865 original size:34 final size:31
Alignment explanation
Indices: 70476810--70476912 Score: 99
Period size: 29 Copynumber: 3.3 Consensus size: 31
70476800 TTTATATGCT
*
70476810 TTATAATATATTATATCATTTTATTATATATATTA
1 TTATATTATATTAT-T-ATTTTATTAT-TATA-TA
70476845 TTCATATATATATT-TTATTTT-TTATTATATA
1 TT-ATAT-TATATTATTATTTTATTATTATATA
70476876 TTATATTATATTATTA-TTTATTATT-TATAA
1 TTATATTATATTATTATTTTATTATTATAT-A
70476906 TT-TATTA
1 TTATATTA
70476913 GTATGTACAA
Statistics
Matches: 62, Mismatches: 1, Indels: 16
0.78 0.01 0.20
Matches are distributed among these distances:
29 17 0.27
30 15 0.24
31 4 0.06
32 4 0.06
33 4 0.06
34 5 0.08
35 3 0.05
36 4 0.06
37 6 0.10
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (31 bp):
TTATATTATATTATTATTTTATTATTATATA
Found at i:70476873 original size:17 final size:17
Alignment explanation
Indices: 70476853--70476903 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
70476843 TATTCATATA
70476853 TATATTTTATTTTTTAT
1 TATATTTTATTTTTTAT
* * *
70476870 TATATATTATATTATAT
1 TATATTTTATTTTTTAT
*
70476887 TAT-TATTTATTATTTAT
1 TATAT-TTTATTTTTTAT
70476904 AATTTATTAG
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
16 1 0.04
17 25 0.96
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TATATTTTATTTTTTAT
Found at i:70476900 original size:7 final size:7
Alignment explanation
Indices: 70476858--70476912 Score: 60
Period size: 7 Copynumber: 8.0 Consensus size: 7
70476848 ATATATATAT
*
70476858 TTTATTT
1 TTTATTA
70476865 TTTATTA
1 TTTATTA
*
70476872 TATATTA
1 TTTATTA
70476879 --TATTA
1 TTTATTA
70476884 TATTATTA
1 T-TTATTA
70476892 TTTATTA
1 TTTATTA
*
70476899 TTTATAA
1 TTTATTA
70476906 TTTATTA
1 TTTATTA
70476913 GTATGTACAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 5 0.12
7 30 0.73
8 6 0.15
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (7 bp):
TTTATTA
Found at i:70477301 original size:28 final size:26
Alignment explanation
Indices: 70477269--70477329 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
70477259 TTTTTATGTT
* *
70477269 ATTTATTGTTTTATATATTTGCGTGGAA
1 ATTTATTGTTGT-TATATTTGCAT-GAA
70477297 ATTTA-TGTTGTTATATTTGCATGAA
1 ATTTATTGTTGTTATATTTGCATGAA
70477322 ATATTATT
1 AT-TTATT
70477330 ATATATATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 5 0.17
26 13 0.45
27 6 0.21
28 5 0.17
ACGTcount: A:0.28, C:0.03, G:0.15, T:0.54
Consensus pattern (26 bp):
ATTTATTGTTGTTATATTTGCATGAA
Found at i:70481560 original size:23 final size:22
Alignment explanation
Indices: 70481534--70481613 Score: 61
Period size: 23 Copynumber: 3.5 Consensus size: 22
70481524 CAATATTAAG
70481534 TAAATACAAAAAGATACAAAAAA
1 TAAATACAAAAAGATA-AAAAAA
** * * *
70481557 TAAATAAACAAAATTATGAACATA
1 TAAAT--ACAAAAAGATAAAAAAA
* *
70481581 TAAATAAAAAAAAGATAAGAAAA
1 TAAAT-ACAAAAAGATAAAAAAA
70481604 TAAATACAAA
1 TAAATACAAA
70481614 TTTTTTTAAA
Statistics
Matches: 42, Mismatches: 13, Indels: 5
0.70 0.22 0.08
Matches are distributed among these distances:
22 4 0.10
23 21 0.50
24 9 0.21
25 8 0.19
ACGTcount: A:0.71, C:0.06, G:0.05, T:0.17
Consensus pattern (22 bp):
TAAATACAAAAAGATAAAAAAA
Found at i:70481569 original size:25 final size:24
Alignment explanation
Indices: 70481539--70481609 Score: 72
Period size: 23 Copynumber: 3.0 Consensus size: 24
70481529 TTAAGTAAAT
70481539 ACAAAAAGATACAAAAAATAAATAA
1 ACAAAAAGATA-AAAAAATAAATAA
** * * *
70481564 ACAAAATTATGAACATATAAATAA
1 ACAAAAAGATAAAAAAATAAATAA
*
70481588 A-AAAAAGATAAGAAAATAAATA
1 ACAAAAAGATAAAAAAATAAATA
70481610 CAAATTTTTT
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
23 15 0.43
24 12 0.34
25 8 0.23
ACGTcount: A:0.72, C:0.06, G:0.06, T:0.17
Consensus pattern (24 bp):
ACAAAAAGATAAAAAAATAAATAA
Found at i:70481960 original size:17 final size:17
Alignment explanation
Indices: 70481935--70481986 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
70481925 ATAGGGAATA
70481935 ATATATAATAAAATATG
1 ATATATAATAAAATATG
* *
70481952 ATATGTAATAAAATATAAA
1 ATATATAATAAAATAT--G
*
70481971 ATATATAATGAAATAT
1 ATATATAATAAAATAT
70481987 AAATAATATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 15 0.52
19 14 0.48
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.35
Consensus pattern (17 bp):
ATATATAATAAAATATG
Found at i:70481960 original size:24 final size:24
Alignment explanation
Indices: 70481933--70481999 Score: 63
Period size: 24 Copynumber: 2.9 Consensus size: 24
70481923 ATATAGGGAA
70481933 TAATATATAATAAAATATGATATG
1 TAATATATAATAAAATATGATATG
*
70481957 TAATA-AAATATAAAATAT-ATAATG
1 TAATATATA-ATAAAATATGAT-ATG
*
70481981 -AA-ATATAA-ATAATATGATA
1 TAATATATAATAAAATATGATA
70482000 AAATAACCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
21 7 0.19
22 4 0.11
23 8 0.22
24 17 0.47
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (24 bp):
TAATATATAATAAAATATGATATG
Found at i:70481979 original size:19 final size:18
Alignment explanation
Indices: 70481934--70482004 Score: 81
Period size: 19 Copynumber: 3.9 Consensus size: 18
70481924 TATAGGGAAT
70481934 AATATATAATAAAATAT-
1 AATATATAATAAAATATA
* *
70481951 GATATGTAATAAAATATAA
1 AATATATAATAAAATAT-A
*
70481970 AATATATAATGAAATATA
1 AATATATAATAAAATATA
*
70481988 AATAATATGATAAAATA
1 AAT-ATATAATAAAATA
70482005 ACCTATAATG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
17 15 0.34
18 4 0.09
19 25 0.57
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (18 bp):
AATATATAATAAAATATA
Found at i:70483001 original size:44 final size:44
Alignment explanation
Indices: 70482946--70483619 Score: 789
Period size: 44 Copynumber: 15.3 Consensus size: 44
70482936 AGACGAAATG
* **
70482946 TTCGATCTGCTCTCTGAAAATACAGAGACGCCAAATCAACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
70482990 TTCGATTTGCTCTCTGGCAATATAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
70483034 TTCGATTTGCTCTCTGGCAATACAGAGACACCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
70483078 TTCGATCTGCTCTCTAACAATACAAAGACGCTAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
70483122 TTCGATTTGCTCTCTGGCAATACAGAGACGCCAAATCTGCTATT
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * * *
70483166 TTTGA-CATGCTTTCTGACAATACTGAGATGCCAAATCTGTTATC
1 TTCGATC-TGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
70483210 TTCGATCTGCTCTTTGACAATACAGAGATGCTAAATCTG-TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
* * * *
70483254 TTCGTTCTGCTCTCTGACAATATAGAGATGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * **
70483298 TTCGATCTGCTCTCTGACAATACAAAGATGTTAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* *
70483342 TTCGATCTGCTCTCTGGCAATACAAAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * * * * *
70483386 TTCGACCTGCTCTCTGATAATACAGGGAAGTCAAATTTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * * *
70483430 TTCGATCTACTCTTTGACAATACAGAGATGCCAAATCT-ATCATT
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
* * * *
70483474 TTCGATCTACTCTCTGTCAATACAGAGATGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* *
70483518 TTTGATTTGCTCTCTGACAATACAGAGACGCCAAATCTG-TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
* *
70483562 TTCGATCTGCTCTCTGTCAATACAGAGACTCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
*
70483606 TTTGATCTGCTCTC
1 TTCGATCTGCTCTC
70483620 CATTAATACA
Statistics
Matches: 540, Mismatches: 82, Indels: 16
0.85 0.13 0.03
Matches are distributed among these distances:
43 3 0.01
44 533 0.99
45 4 0.01
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
Found at i:70492375 original size:38 final size:38
Alignment explanation
Indices: 70492333--70492411 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
70492323 TGTACTGGGA
70492333 CTTCAAGTCATCTCGGTCGTCCTCAATCTTCCTCTTTT
1 CTTCAAGTCATCTCGGTCGTCCTCAATCTTCCTCTTTT
70492371 CTTCAAGTCATCTCGGTCGTCCTCAATCTTCCTCTTTT
1 CTTCAAGTCATCTCGGTCGTCCTCAATCTTCCTCTTTT
70492409 CTT
1 CTT
70492412 TCCTTACTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.13, C:0.34, G:0.10, T:0.43
Consensus pattern (38 bp):
CTTCAAGTCATCTCGGTCGTCCTCAATCTTCCTCTTTT
Found at i:70495375 original size:22 final size:21
Alignment explanation
Indices: 70495343--70495417 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 21
70495333 CAATATTAAG
70495343 TAAATACAAAAAGATACAAAAAA
1 TAAATA-AAAAAGATA-AAAAAA
* * *
70495366 TAAATAAAAAAAATTATGAACATA
1 TAAATAAAAAAGA-TA--AAAAAA
*
70495390 TAAATAAAAAAAGATAAGAAAA
1 TAAAT-AAAAAAGATAAAAAAA
70495412 TAAATA
1 TAAATA
70495418 CAAATTTTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
21 1 0.02
22 14 0.34
23 8 0.20
24 11 0.27
25 7 0.17
ACGTcount: A:0.72, C:0.04, G:0.05, T:0.19
Consensus pattern (21 bp):
TAAATAAAAAAGATAAAAAAA
Found at i:70495766 original size:24 final size:24
Alignment explanation
Indices: 70495739--70495803 Score: 61
Period size: 24 Copynumber: 2.9 Consensus size: 24
70495729 ATATTGGAAA
70495739 TAATATATAATAAAATATGATATG
1 TAATATATAATAAAATATGATATG
*
70495763 TAATA-AAATATAAAATAT-A-ATG
1 TAATATATA-ATAAAATATGATATG
*
70495785 -AA-ATATAA-ATAATATGATA
1 TAATATATAATAAAATATGATA
70495804 AAATAACCTA
Statistics
Matches: 34, Mismatches: 3, Indels: 11
0.71 0.06 0.23
Matches are distributed among these distances:
19 6 0.18
20 3 0.09
21 5 0.15
22 3 0.09
23 3 0.09
24 14 0.41
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (24 bp):
TAATATATAATAAAATATGATATG
Found at i:70495807 original size:19 final size:17
Alignment explanation
Indices: 70495738--70495808 Score: 70
Period size: 17 Copynumber: 4.1 Consensus size: 17
70495728 AATATTGGAA
*
70495738 ATAATATATAATAAAAT
1 ATAAAATATAATAAAAT
* * *
70495755 ATGATATGTAATAAAAT
1 ATAAAATATAATAAAAT
*
70495772 ATAAAATATAATGAAAT
1 ATAAAATATAATAAAAT
*
70495789 ATAAATAATATGATAAAAT
1 AT-AA-AATATAATAAAAT
70495808 A
1 A
70495809 ACCTATAATT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
17 30 0.68
18 2 0.05
19 12 0.27
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (17 bp):
ATAAAATATAATAAAAT
Found at i:70495832 original size:17 final size:17
Alignment explanation
Indices: 70495736--70495832 Score: 58
Period size: 17 Copynumber: 5.7 Consensus size: 17
70495726 ATAATATTGG
70495736 AAATAATATATAA-TAA
1 AAATAATATATAATTAA
* *
70495752 AATATGATATGTAA-TAA
1 AA-ATAATATATAATTAA
* *
70495769 AATATAAAATATAATGAA
1 AA-ATAATATATAATTAA
* *
70495787 ATATAA-ATA-ATATGATA
1 AAATAATATATA-ATTA-A
**
70495804 AAATAACCTATAATTAA
1 AAATAATATATAATTAA
70495821 AAATAATATATA
1 AAATAATATATA
70495833 TACTATTTTT
Statistics
Matches: 63, Mismatches: 12, Indels: 11
0.73 0.14 0.13
Matches are distributed among these distances:
15 1 0.02
16 9 0.14
17 44 0.70
18 8 0.13
19 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (17 bp):
AAATAATATATAATTAA
Found at i:70497458 original size:44 final size:44
Alignment explanation
Indices: 70497408--70498095 Score: 826
Period size: 44 Copynumber: 15.6 Consensus size: 44
70497398 AGTCGAAATG
* *
70497408 TTCGATCTGCTCTCTGACAATACAGTGACGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
70497452 TTCGATCTACTTTCTGGCAATACTA-AGACACCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATAC-AGAGACGCCAAATCTGCTATC
* * * * * * *
70497496 TTTGACCTACACTCTGACAATATAGAGATGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* *
70497540 TTCGATCTGCTCTCTGACAATACAAAGACGCTAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* *
70497584 TTCGATCTGCTCTCTGGCAATACAGAGACGCCAAATCTGCTCTC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * * *
70497628 TTCGACCTGCTTTCTGGCAATACAGAGATGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
70497672 TTCGATCTGCTCTCTTACAATACAGAGATGCCAAATCT-ATCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
* *
70497716 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
70497760 TTCGATCTGCTCTATGACAATACAAAGACGCTAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
*
70497804 TTCGATCTGCTCTCTGGCAATACAGAGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* ** * *
70497848 TTCGACCTGCTCTCAAACAATACAGAGACGTCAAATCTGTTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
***
70497892 TTCGATCTGCTCTCTGACAATACAGAGTTTCCAAATCTG-TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
* * * *
70497936 TTCGATCTACTCTCTGTCAATACAGAGATGCCAAATCTGCTATA
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * * *
70497980 TTTGATTTGCTCTCTGACAAAACAGAGACTCCAAATCTG-TCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATC
* * * *
70498024 TTCGATCTGCTCTCTGTCAAAATAGAGACACCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
* * *
70498068 TTTGATCTGCTCTCCGTCAATACAGAGA
1 TTCGATCTGCTCTCTGACAATACAGAGA
70498096 TTCCAGATGT
Statistics
Matches: 552, Mismatches: 84, Indels: 16
0.85 0.13 0.02
Matches are distributed among these distances:
43 4 0.01
44 544 0.99
45 4 0.01
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.31
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATC
Found at i:70511359 original size:12 final size:12
Alignment explanation
Indices: 70511344--70511386 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
70511334 TATAGGGAAT
70511344 AATATAATATAA
1 AATATAATATAA
* **
70511356 AATATGATATGT
1 AATATAATATAA
*
70511368 AATAAAATATAA
1 AATATAATATAA
70511380 AATATAA
1 AATATAA
70511387 AATATATAAT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (12 bp):
AATATAATATAA
Found at i:70511387 original size:31 final size:30
Alignment explanation
Indices: 70511344--70511421 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 30
70511334 TATAGGGAAT
* *
70511344 AATATAATATAAAATATGAT-ATGTAATAAA
1 AATAAAATATAAAATAT-ATAATGAAATAAA
*
70511374 ATATAAAATATAAAATATATAATGAAATATA
1 A-ATAAAATATAAAATATATAATGAAATAAA
*
70511405 AATAATATGATAAAATA
1 AATAAAAT-ATAAAATA
70511422 ACCTATAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
30 9 0.22
31 32 0.78
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (30 bp):
AATAAAATATAAAATATATAATGAAATAAA
Found at i:70511390 original size:19 final size:19
Alignment explanation
Indices: 70511376--70511421 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
70511366 GTAATAAAAT
70511376 ATAAAATATAAA-ATATATA
1 ATAAAATATAAATA-ATATA
* *
70511395 ATGAAATATAAATAATATG
1 ATAAAATATAAATAATATA
70511414 ATAAAATA
1 ATAAAATA
70511422 ACCTATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 22 0.96
20 1 0.04
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.30
Consensus pattern (19 bp):
ATAAAATATAAATAATATA
Found at i:70512833 original size:44 final size:44
Alignment explanation
Indices: 70512773--70513372 Score: 772
Period size: 44 Copynumber: 13.6 Consensus size: 44
70512763 AAATGTTTGC
*
70512773 TCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
* * * *
70512817 TCTGCTCTCTGGCAATACAGAGGCACCAAATCTGCTATCTTTGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
* * *
70512861 CCTGCTCTCTGATAATACAGAGACGCCAAATCTGTTATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
* *
70512905 TTTGCTCTCTGACAATACAAAGACGCCAAATCTGCTATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
* *
70512949 TCTGCTCTCTGGCAATACAGAGACGCCAAATCTTCTATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
* * * *
70512993 CCTGTTTTCTGACAATACAGAGACGCCAAATCTGTTATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
* *
70513037 TCTGCTCTCTGACAATACAGAGATGCCAAATCTGTTATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
* ** *
70513081 TCTGCTCTCTGACAATACAAAGACGTTAAATTTGCTATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
*
70513125 TCTGCTCTCTGGCAATACAGAGACGCCAAATCTGCTATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
* * * * * *
70513169 CCTCCTCTCTAATAATACAGAGACGCCAAATCT-ATCATTTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATCTTCGA
* * * * * *
70513213 TCTACTCTCTGTCAATACAGAGATGCAAAATCTGCTATCTTTGT
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
*
70513257 TTTGCTCTCTGACAATACAGAGACGCCAAATCTG-TCATCTTCGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATCTTCGA
* * * * *
70513301 TCTACTCTCTGTCAATACAGAGACGTCAAATTTGCTATCTTTGA
1 TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
* * *
70513345 TCTGCTCTCCGTCAATACAGAGATGCCA
1 TCTGCTCTCTGACAATACAGAGACGCCA
70513373 GATGTCACCG
Statistics
Matches: 475, Mismatches: 77, Indels: 8
0.85 0.14 0.01
Matches are distributed among these distances:
43 2 0.00
44 471 0.99
45 2 0.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.31
Consensus pattern (44 bp):
TCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCGA
Found at i:70524245 original size:19 final size:19
Alignment explanation
Indices: 70524231--70524276 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
70524221 GTAATAAAAT
70524231 ATAAAATATAAA-ATATATA
1 ATAAAATATAAATA-ATATA
* *
70524250 ATGAAATATAAATAATATG
1 ATAAAATATAAATAATATA
70524269 ATAAAATA
1 ATAAAATA
70524277 ACCTATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 22 0.96
20 1 0.04
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.30
Consensus pattern (19 bp):
ATAAAATATAAATAATATA
Found at i:70525882 original size:44 final size:44
Alignment explanation
Indices: 70525832--70526696 Score: 1128
Period size: 44 Copynumber: 19.7 Consensus size: 44
70525822 GAAATGTTCA
* * * *
70525832 ATCTGCTCTCTGACAATATAAAGATGCCAAATCTACTATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* *
70525876 ATCTGCTCTCTGGCAATACAGAGACGCCAAATCTGCTATCTTTG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* *
70525920 ACCTGCTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* *
70525964 ATCTGCTCTCTGACAATACAGAGACGCTAAATCTGCTAACTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* *
70526008 ACCTGCTCTCT-AGCAATATAGAGACGCCAAATCTGCTATCTTCG
1 ATCTGCTCTCTGA-CAATACAGAGACGCCAAATCTGCTATCTTCG
* * * * *
70526052 ACCTCCTTTTTGACAATACAGAGACGCCAAATCTGTTATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
*
70526096 ATCTGCTCTCTGACAATACAGAGATGCCAAATCTG-TCATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATCTTCG
* *
70526140 ATCTGCTCTCTGACAATACAGAGACGCTAAATTTGCTATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* *
70526184 ATCTGCTCTCTGGCAATACAGAGACGCCAAATTTGCTATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* * *
70526228 ACCTGCTCTGTGACAATACAGAGACGCCAAATCTGTTATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* * * *
70526272 ATCTACTCTCTGACAATACAAAGATGCTAAATCTG-TCATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATCTTCG
* *
70526316 ATCTACTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* * *
70526360 ATCTGCTCTCTGACAATACAAAGACGCTAAATCTGCTATCTTTG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* *
70526404 ATCTGCTCTCTGGCAATACAGAGACTCCAAATCTGCTATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* * *
70526448 ACCTGTTCTCTGACAATACAGAGACGCCAAATCTGTTATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* ** * *
70526492 ATCTGCTCTCTGATAATGGAGAGATGCCAAATCT-ATCATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATCTTCG
* * * *
70526536 ATCTACTCTCTGTCAATACAGAGATGCCAAATCTGCTATCTTTG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* *
70526580 ATTTGCTCTCTGACAATACAAAGACGCCAAATCTG-TCATCTTCG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCT-ATCTTCG
* * * *
70526624 ATCTGTTCTCTGTCAATATAGAGACGCCAAATCTGCTATCTTTG
1 ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
* * * *
70526668 ATCTGCTCTCCGTCAATATAGAGATGCCA
1 ATCTGCTCTCTGACAATACAGAGACGCCA
70526697 GATGTCACCG
Statistics
Matches: 720, Mismatches: 91, Indels: 20
0.87 0.11 0.02
Matches are distributed among these distances:
43 5 0.01
44 710 0.99
45 5 0.01
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (44 bp):
ATCTGCTCTCTGACAATACAGAGACGCCAAATCTGCTATCTTCG
Found at i:70532010 original size:13 final size:13
Alignment explanation
Indices: 70531992--70532017 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70531982 AATGTATCCA
70531992 AGGCCTCCCCAAC
1 AGGCCTCCCCAAC
70532005 AGGCCTCCCCAAC
1 AGGCCTCCCCAAC
70532018 TAAAAAGTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.54, G:0.15, T:0.08
Consensus pattern (13 bp):
AGGCCTCCCCAAC
Found at i:70538451 original size:23 final size:22
Alignment explanation
Indices: 70538425--70538504 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 22
70538415 CAATATTAAG
70538425 TAAATACAAAAAAATACAAAAAA
1 TAAATACAAAAAAATA-AAAAAA
* * *
70538448 TAAATA-AACAAAATTATGAACATA
1 TAAATACAA-AAAA--ATAAAAAAA
* *
70538472 TAAATAAAAAAAAGATAAGAAAA
1 TAAATACAAAAAA-ATAAAAAAA
70538495 TAAATACAAA
1 TAAATACAAA
70538505 TTTTTTAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
22 2 0.05
23 24 0.55
24 14 0.32
25 4 0.09
ACGTcount: A:0.72, C:0.06, G:0.04, T:0.17
Consensus pattern (22 bp):
TAAATACAAAAAAATAAAAAAA
Found at i:70538899 original size:19 final size:19
Alignment explanation
Indices: 70538855--70538900 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
70538845 GTAATAAAAT
70538855 ATAAAATATAAAATATATA
1 ATAAAATATAAAATATATA
* *
70538874 ATGAAATAT-AAATCATATG
1 ATAAAATATAAAAT-ATATA
70538893 ATAAAATA
1 ATAAAATA
70538901 ACCTATAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.30
Consensus pattern (19 bp):
ATAAAATATAAAATATATA
Found at i:70545627 original size:22 final size:22
Alignment explanation
Indices: 70545600--70545722 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
70545590 ATGTGCATAT
70545600 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
70545622 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
70545646 TATGTGATAAGGCCAAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
70545669 ATGTGATGAATGTG-AGCAT-G-CA
1 ATGTGAT-AA-G-GCCGAATGGCCA
70545691 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
70545716 ATGTGAT
1 ATGTGAT
70545723 GAATATGAAC
Statistics
Matches: 73, Mismatches: 12, Indels: 32
0.62 0.10 0.27
Matches are distributed among these distances:
22 24 0.33
23 17 0.23
24 16 0.22
25 16 0.22
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:70545644 original size:47 final size:47
Alignment explanation
Indices: 70545584--70545768 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
70545574 GATAATTGTG
**
70545584 ATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
*
70545631 ATGTGAACATGCATATATGTGATAAGGCCAAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
70545678 ATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * *
70545725 ATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
70545769 AATATATGTA
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:70546023 original size:37 final size:37
Alignment explanation
Indices: 70545973--70546085 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
70545963 GGAAATATAT
*
70545973 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
70546010 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
70546047 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
70546084 TC
1 TC
70546086 TGAGCTAAAG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:70547789 original size:40 final size:40
Alignment explanation
Indices: 70547361--70547778 Score: 680
Period size: 40 Copynumber: 10.5 Consensus size: 40
70547351 GTGGTATACT
* *
70547361 CGGGCTAAGTCCCGTAGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
* * *
70547401 CGGGCTAAGCCCCAAAGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
70547441 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
*
70547481 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
70547521 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
*
70547561 CGGGCTAAG-CCCGAAGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
70547600 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
* *
70547640 CGGGCTAA--CCCGAAGAGCATTCGTGCTGGTGTTATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
70547678 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
* ** * *
70547718 CGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
*
70547758 CGGGCTAGGTCCCGAAGAGCA
1 CGGGCTAAGTCCCGAAGAGCA
70547779 ATCATGCTGG
Statistics
Matches: 352, Mismatches: 23, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
38 36 0.10
39 38 0.11
40 278 0.79
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
Found at i:70547995 original size:25 final size:25
Alignment explanation
Indices: 70547954--70548003 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
70547944 TGTGCAAATA
70547954 CGAATGAATAAGAGCACTATGTGTG
1 CGAATGAATAAGAGCACTATGTGTG
* *
70547979 CGAATG-ATTAGAGGCACTGTGTGTG
1 CGAATGAATAAGA-GCACTATGTGTG
70548004 TGCGAATTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.30, C:0.12, G:0.32, T:0.26
Consensus pattern (25 bp):
CGAATGAATAAGAGCACTATGTGTG
Found at i:70551922 original size:47 final size:47
Alignment explanation
Indices: 70551860--70552044 Score: 271
Period size: 47 Copynumber: 3.9 Consensus size: 47
70551850 GATAATTGTG
**
70551860 ATGTGAATGTGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* *
70551907 ATGTGAACATCCATATATGTGATAAGGCCAAATGGCCAATGTGATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * *
70551954 ATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTTATGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * *
70552001 ATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA
1 ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGA
70552045 AATATATGTA
Statistics
Matches: 122, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 122 1.00
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.27
Consensus pattern (47 bp):
ATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:70552299 original size:37 final size:37
Alignment explanation
Indices: 70552249--70552361 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
70552239 GGAAATATAT
*
70552249 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
70552286 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
70552323 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
70552360 TC
1 TC
70552362 TGAGCTAAAG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:70558614 original size:26 final size:27
Alignment explanation
Indices: 70558585--70558638 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
70558575 TCACACAAGT
*
70558585 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
70558611 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
70558638 T
1 T
70558639 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:70558669 original size:27 final size:27
Alignment explanation
Indices: 70558639--70558784 Score: 202
Period size: 27 Copynumber: 5.4 Consensus size: 27
70558629 GGGGCAAAAT
* * *
70558639 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
70558666 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
70558693 GGTATTTCTACCCTACAAAGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
70558720 GGTAATTCTATCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
70558747 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
70558774 GGTAATTCTAC
1 GGTAATTCTAC
70558785 AACTTATCCA
Statistics
Matches: 102, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:70566341 original size:27 final size:27
Alignment explanation
Indices: 70566200--70566344 Score: 166
Period size: 27 Copynumber: 5.4 Consensus size: 27
70566190 GGGCAAAATG
* * * *
70566200 GTAATTTTACCCCACAAGGGTATCTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
70566226 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* * *
70566254 GTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
70566281 GCAATTCTATCCTACAGGGGTATTACA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
70566308 GCAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
70566335 GTAATTCTAC
1 GTAATTCTAC
70566345 AACTTATCCA
Statistics
Matches: 100, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 98 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:70569694 original size:50 final size:50
Alignment explanation
Indices: 70569619--70569896 Score: 254
Period size: 50 Copynumber: 5.5 Consensus size: 50
70569609 CTCTTACGCA
* * * *
70569619 TAGTAGCCTGCACTTAATACAACACATGTGACCTAACAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* **
70569669 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * * * * * ** *
70569719 TAATAGCTTGCACTTAGTACTACACACGTGATCGAAGCTATCAGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAATCTGGTACACG
* * * * *
70569770 TAGTAGCCTGCAGTTAATAC-ACACATGAGACTTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
* * *** *
70569819 TAGTAGCCTACACTTAGTACTACACACGTAACCTAA-AACCGTCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA---TCTGGTACACG
*
70569871 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
70569897 TGTGTTCTCA
Statistics
Matches: 178, Mismatches: 45, Indels: 8
0.77 0.19 0.03
Matches are distributed among these distances:
49 28 0.16
50 96 0.54
51 23 0.13
52 31 0.17
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACG
Found at i:70569822 original size:150 final size:152
Alignment explanation
Indices: 70569616--70569896 Score: 424
Period size: 150 Copynumber: 1.9 Consensus size: 152
70569606 GCTCTCTTAC
* * *
70569616 GCATAGTAGCCTGCACTTAATACAACACATGTGACCTAACAATCTGGTACATGTAGTAGCCTGCA
1 GCATAGTAGCCTGCACTTAATACAACACATGAGACCTAACAATCTGGTACACGTAGTAGCCTACA
* * * *
70569681 CTTAGTACTACACACGTGACCT-AACCATC-TAATACACGTAATAGCTTGCACTTAGTACTACAC
66 CTTAGTACTACACACGTAACCTAAACCATCTTAA-ACACATAATAGCCTGCACATAGTACTACAC
70569744 ACGTGATCGAAGCTATCAGGTAT
130 ACGTGATCGAAGCTATCAGGTAT
* *
70569767 GCATAGTAGCCTGCAGTTAATAC-ACACATGAGACTTAACAATCTGGTACACGTAGTAGCCTACA
1 GCATAGTAGCCTGCACTTAATACAACACATGAGACCTAACAATCTGGTACACGTAGTAGCCTACA
* *
70569831 CTTAGTACTACACACGTAACCTAAAACCGTCTTAAACACATAGTAGCCTGCACATAGTACTACAC
66 CTTAGTACTACACACGTAACCT-AAACCATCTTAAACACATAATAGCCTGCACATAGTACTACAC
70569896 A
130 A
70569897 TGTGTTCTCA
Statistics
Matches: 116, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
150 58 0.50
151 22 0.19
152 33 0.28
153 3 0.03
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (152 bp):
GCATAGTAGCCTGCACTTAATACAACACATGAGACCTAACAATCTGGTACACGTAGTAGCCTACA
CTTAGTACTACACACGTAACCTAAACCATCTTAAACACATAATAGCCTGCACATAGTACTACACA
CGTGATCGAAGCTATCAGGTAT
Found at i:70571904 original size:29 final size:28
Alignment explanation
Indices: 70571868--70571945 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
70571858 TCATGAGATT
70571868 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
70571898 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
70571925 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
70571946 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:70572213 original size:173 final size:174
Alignment explanation
Indices: 70571898--70572224 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
70571888 AAATTGTACA
* *
70571898 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
70571963 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
70572028 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
70572072 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
70572137 TGTGC-AACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
70572201 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
70572225 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:70580059 original size:29 final size:28
Alignment explanation
Indices: 70580023--70580100 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
70580013 TCATGAGATT
70580023 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
70580053 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
70580080 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
70580101 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:70580372 original size:172 final size:174
Alignment explanation
Indices: 70580053--70580378 Score: 566
Period size: 172 Copynumber: 1.9 Consensus size: 174
70580043 AAATTGTACA
* *
70580053 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
70580118 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
70580183 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
70580227 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
70580292 TGTGC-AACCC-ATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
70580355 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
70580379 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
172 75 0.52
173 5 0.03
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:70585560 original size:138 final size:138
Alignment explanation
Indices: 70585308--70585867 Score: 784
Period size: 138 Copynumber: 4.1 Consensus size: 138
70585298 TAGAAAAATG
* *
70585308 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTTTTTTATATTTTGACCCAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * * *
70585373 TATAAATGCTTATATTAATAAATTCGGTAAAATATATACAATTGATATTTTGTATGAATCAAATC
66 TATAAATGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
70585438 CATATATT
131 CATATATT
* * * * *
70585446 AATAATATTCTTTCCAAAAGAATATTAATTTCCATGTCTATTATACTTTAACTGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * * *
70585511 TGTAACTGTTTATATTGATAAATTCAGTGAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAAATGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
70585576 CATATATT
131 CATATATT
* * * * **
70585584 AATTATATTATTCCCAAAAGGATATTAATTTTCATGTCTTTTATATTTTGACTAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
70585649 TATAAATGTTTAT-TAATATAAATGT-AGTAAAATACATGCAATTAATATTTTGTATGAATCAAA
66 TATAAATGTTTATATTA-ATAAAT-TCAGTAAAATATATACAATTAATATTTTGTATGAATCAAA
70585712 TTCATATATT
129 TTCATATATT
* * * * *
70585722 AATTATCTTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTACATTTTGACCGAAATCAATTAC
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
**
70585787 TATAAACCTTTAT-TTCAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
66 TATAAATGTTTATATT-AATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
*
70585851 TTATATATT
130 TCATATATT
70585860 AATTATAT
1 AATTATAT
70585868 CTATGCTCTT
Statistics
Matches: 371, Mismatches: 47, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
137 2 0.01
138 367 0.99
139 2 0.01
ACGTcount: A:0.40, C:0.10, G:0.06, T:0.44
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAAATGTTTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:70591023 original size:30 final size:30
Alignment explanation
Indices: 70590989--70591139 Score: 132
Period size: 29 Copynumber: 5.1 Consensus size: 30
70590979 AGCTTCAGCT
* *
70590989 ATCAAATAATGAAAAAGGATGGTGACGACC
1 ATCAAACAATGAAAAGGGATGGTGACGACC
70591019 ATC-AACAATGAAAAGGGATGGTGACGACC
1 ATCAAACAATGAAAAGGGATGGTGACGACC
* ** * *
70591048 ATCAAA-ATGTGAAAAGGGATAACT-TCTG-CT
1 ATCAAACA-ATGAAAAGGGAT-GGTGAC-GACC
*** *
70591078 ATCAAATTCTGAAAAGGGATGGTGATGACC
1 ATCAAACAATGAAAAGGGATGGTGACGACC
*
70591108 ATC-AACAATAAAAAGGGATGGTGACGACC
1 ATCAAACAATGAAAAGGGATGGTGACGACC
70591137 ATC
1 ATC
70591140 GAATTTCAAA
Statistics
Matches: 95, Mismatches: 19, Indels: 15
0.74 0.15 0.12
Matches are distributed among these distances:
29 54 0.57
30 39 0.41
31 2 0.02
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.19
Consensus pattern (30 bp):
ATCAAACAATGAAAAGGGATGGTGACGACC
Found at i:70591108 original size:89 final size:88
Alignment explanation
Indices: 70590968--70591225 Score: 338
Period size: 89 Copynumber: 2.9 Consensus size: 88
70590958 CATCGACTAA
* * *
70590968 TGAAAAGGGATAGCTTCAGCTATCAAATAATGAAAAAGGATGGTGACGACCATCAACAATGAAAA
1 TGAAAAGGGATAACTTCAGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGAAAA
70591033 GGGATGGTGACGACCATCAAAATG
66 GGGATGGTGACGACCATC-AAATG
* * * *
70591057 TGAAAAGGGATAACTTCTGCTATCAAATTCTGAAAAGGGATGGTGATGACCATCAACAATAAAAA
1 TGAAAAGGGATAACTTCAGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGAAAA
* *
70591122 GGGATGGTGACGACCATCGAATT
66 GGGATGGTGACGACCATCAAATG
* * * * * *
70591145 TCAAAAAAGGATAACCTT-GGCTATCAAATTATAAAAAGGGATGGTGACAACCATTAACAATGAA
1 T-GAAAAGGGATAA-CTTCAGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGAA
*
70591209 AAAGGATGGTGACGACC
64 AAGGGATGGTGACGACC
70591226 TTTATGAAAA
Statistics
Matches: 148, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
88 4 0.03
89 141 0.95
90 3 0.02
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (88 bp):
TGAAAAGGGATAACTTCAGCTATCAAATTATGAAAAGGGATGGTGACGACCATCAACAATGAAAA
GGGATGGTGACGACCATCAAATG
Found at i:70597838 original size:29 final size:30
Alignment explanation
Indices: 70597773--70597891 Score: 115
Period size: 29 Copynumber: 4.1 Consensus size: 30
70597763 TACATACATG
* * *
70597773 CATA-TGGCCCACTAGGCCC-AATCTCATT
1 CATACTGGCCCATTAGGCCCAAATCACTTT
*
70597801 CCTA-TGGCCCATTAGGCCCAAATCA-TATT
1 CATACTGGCCCATTAGGCCCAAATCACT-TT
** *
70597830 TGT-CTGGCCCATTAGTCCCAAATCACTTT
1 CATACTGGCCCATTAGGCCCAAATCACTTT
*
70597859 CATAC-GGCCCATTAGGCCCAAATCACATT
1 CATACTGGCCCATTAGGCCCAAATCACTTT
70597888 CATA
1 CATA
70597892 TACAAGCTTC
Statistics
Matches: 75, Mismatches: 11, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
28 17 0.23
29 56 0.75
30 2 0.03
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (30 bp):
CATACTGGCCCATTAGGCCCAAATCACTTT
Found at i:70602294 original size:24 final size:24
Alignment explanation
Indices: 70602267--70602313 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
70602257 GGCCCAAAAC
70602267 CCCTTACAGAGCCCAAACAAGTCT
1 CCCTTACAGAGCCCAAACAAGTCT
70602291 CCCTTACAGAGCCCAAACAAGTC
1 CCCTTACAGAGCCCAAACAAGTC
70602314 GACATACATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.38, G:0.13, T:0.15
Consensus pattern (24 bp):
CCCTTACAGAGCCCAAACAAGTCT
Found at i:70602356 original size:28 final size:28
Alignment explanation
Indices: 70602324--70602401 Score: 113
Period size: 29 Copynumber: 2.8 Consensus size: 28
70602314 GACATACATG
*
70602324 CATATGGCCCACTAGGCCCAATC-TCATT
1 CATATGGCCCATTAGGCCCAATCAT-ATT
70602352 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCC-AATCATATT
*
70602381 CGTATGGCCCATTAGGCCCAA
1 CATATGGCCCATTAGGCCCAA
70602402 ATCACTTTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 20 0.43
29 25 0.54
30 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (28 bp):
CATATGGCCCATTAGGCCCAATCATATT
Found at i:70602386 original size:29 final size:30
Alignment explanation
Indices: 70602358--70602413 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
70602348 CATTCATATG
*
70602358 GCCCATTAGGCCCAAATCAT-ATTCGTATG
1 GCCCATTAGGCCCAAATCATCATTCATATG
*
70602387 GCCCATTAGGCCCAAATCA-CTTTCATA
1 GCCCATTAGGCCCAAATCATCATTCATA
70602414 CGACCTGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (30 bp):
GCCCATTAGGCCCAAATCATCATTCATATG
Found at i:70602433 original size:58 final size:57
Alignment explanation
Indices: 70602326--70602434 Score: 137
Period size: 58 Copynumber: 1.9 Consensus size: 57
70602316 CATACATGCA
* * *
70602326 TATGGCCCACTAGGCCCAATCTCATTCATATGGCCCATTAGGCCCAAATCATATTCG
1 TATGGCCCACTAGGCCCAATCACATTCATACGACCCATTAGGCCCAAATCATATTCG
* * ** *
70602383 TATGGCCCATTAGGCCCAAATCACTTTCATACGACCTGTTAGGCCTAAATCA
1 TATGGCCCACTAGGCCC-AATCACATTCATACGACCCATTAGGCCCAAATCA
70602435 CTTCTATATA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 16 0.37
58 27 0.63
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCATACGACCCATTAGGCCCAAATCATATTCG
Found at i:70602645 original size:16 final size:16
Alignment explanation
Indices: 70602624--70602663 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
70602614 GCCGAACTTT
70602624 CAGCTTTTCAGCATTG
1 CAGCTTTTCAGCATTG
** *
70602640 CAGCTTTTTGGCATTT
1 CAGCTTTTCAGCATTG
70602656 CAGCTTTT
1 CAGCTTTT
70602664 ACCGATCTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.45
Consensus pattern (16 bp):
CAGCTTTTCAGCATTG
Found at i:70606843 original size:47 final size:47
Alignment explanation
Indices: 70606784--70606904 Score: 188
Period size: 47 Copynumber: 2.6 Consensus size: 47
70606774 GCATTGGCAC
*
70606784 TAAGACAAGGATACCATGTAAGACCATATTTGGAAAATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATATTTGGAAAATGACATTTGG
* * *
70606831 TAAGACAAGGATACCATGTAAGAGCATGTTTGGAACATGACATTTGG
1 TAAGACAAGGATACCATGTAAGACCATATTTGGAAAATGACATTTGG
* *
70606878 TAAGATAAGGATATCATGTAAGACCAT
1 TAAGACAAGGATACCATGTAAGACCAT
70606905 GCCAAGGCAT
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.26
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATATTTGGAAAATGACATTTGG
Found at i:70606948 original size:54 final size:55
Alignment explanation
Indices: 70606878--70607030 Score: 184
Period size: 54 Copynumber: 2.8 Consensus size: 55
70606868 TGACATTTGG
*
70606878 TAAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGCT-CTA
1 TAAGGTAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGCTGCTA
* ** * * * *
70606932 TAAGGTAAGGAAATCATGTAAGACCATTTCAAGACATGGCATTGATGAGTTGCTT
1 TAAGGTAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGCTGCTA
* **
70606987 TAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTG
1 TAAGG-TAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTG
70607031 GTGAGTTCAT
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
54 44 0.54
55 34 0.41
56 4 0.05
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (55 bp):
TAAGGTAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGCTGCTA
Found at i:70607012 original size:55 final size:53
Alignment explanation
Indices: 70606892--70607080 Score: 182
Period size: 55 Copynumber: 3.5 Consensus size: 53
70606882 ATAAGGATAT
* * * * * * ***
70606892 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGCTCTATAAGGTAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTC-ATAAAGCAAGGATCC
* * *
70606946 CATGTAAGACCATTTCAAGACATGGCATTGATGAGTTGCTTTAAGGCAAAGG-TCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAAGC-AAGGATCC
* * * *
70607001 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAAGCAAGGATGC
1 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAAGCAAGGATCC
*
70607054 CAAGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGTCAAGACATGGCA
70607081 ATGGTAAGTT
Statistics
Matches: 112, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
52 4 0.04
53 31 0.28
54 33 0.29
55 40 0.36
56 4 0.04
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAAGCAAGGATCC
Found at i:70612319 original size:36 final size:36
Alignment explanation
Indices: 70612272--70612348 Score: 138
Period size: 36 Copynumber: 2.2 Consensus size: 36
70612262 TGATGTTTCC
70612272 ATAGAAGGGAAAAATGTTCAAGGTGTCATAAAACAT
1 ATAGAAGGGAAAAATGTTCAAGGTGTCATAAAACAT
*
70612308 ATAGAAGGGAAAATTGTTCAAGGTGTCATAAAACAT
1 ATAGAAGGGAAAAATGTTCAAGGTGTCATAAAACAT
70612344 A-AGAA
1 ATAGAA
70612349 AAATGGATAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
35 4 0.10
36 36 0.90
ACGTcount: A:0.48, C:0.08, G:0.22, T:0.22
Consensus pattern (36 bp):
ATAGAAGGGAAAAATGTTCAAGGTGTCATAAAACAT
Found at i:70612901 original size:15 final size:14
Alignment explanation
Indices: 70612854--70612901 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 14
70612844 GTAAGTTGAG
70612854 TAGCATTTTATTAT
1 TAGCATTTTATTAT
*
70612868 TATGCAATTATTGTTAT
1 TA-GC-ATT-TTATTAT
70612885 TAGCATTGTTATTAT
1 TAGCATT-TTATTAT
70612900 TA
1 TA
70612902 AGTTATGTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
14 2 0.07
15 13 0.46
16 5 0.18
17 8 0.29
ACGTcount: A:0.29, C:0.06, G:0.10, T:0.54
Consensus pattern (14 bp):
TAGCATTTTATTAT
Found at i:70613356 original size:55 final size:53
Alignment explanation
Indices: 70613221--70613379 Score: 155
Period size: 55 Copynumber: 3.0 Consensus size: 53
70613211 TCATAAGGAT
* * * * * *
70613221 ATCATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGAAAGGAA
1 ATCATGTAAAACTATGCCAAGGCATGGCATTGATGAGTTCTATAAAGCAA-GAA
*
70613275 ATCATGTAAGAACTTAT--CAAGACATGGCATTGATGAGTTACTATAAAGCAA-AA
1 ATCATGTAA-AAC-TATGCCAAGGCATGGCATTGATGAGTT-CTATAAAGCAAGAA
* *
70613328 GTCCCATGTAAAACTATGCCAAGGCATGGCATTGGTGAGTTC-ATAAAGCAAG
1 AT--CATGTAAAACTATGCCAAGGCATGGCATTGATGAGTTCTATAAAGCAAG
70613380 GATACCACGT
Statistics
Matches: 87, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
53 15 0.17
54 32 0.37
55 38 0.44
56 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (53 bp):
ATCATGTAAAACTATGCCAAGGCATGGCATTGATGAGTTCTATAAAGCAAGAA
Found at i:70613423 original size:53 final size:54
Alignment explanation
Indices: 70613215--70613422 Score: 177
Period size: 53 Copynumber: 3.9 Consensus size: 54
70613205 AGGATATCAT
* * * * *
70613215 AAGGATATCATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAAGC
* * * * ** *
70613269 AAGGAAATCATGTAAGAACTTATCAAGACATGGCATTGATGAGTTACTATAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAAGC
* * * * * * *
70613324 AA-AAGTCCCATGTAAAACTATGCCAAGGCATGGCATTGGTGAGTTC-ATAAAGC
1 AAGGA-TACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAAGC
* * * *
70613377 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
70613423 AAAAAGGAAA
Statistics
Matches: 120, Mismatches: 31, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
53 42 0.35
54 40 0.33
55 38 0.32
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAAGC
Found at i:70615278 original size:27 final size:27
Alignment explanation
Indices: 70615223--70615287 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
70615213 AGCATAGCTG
* *
70615223 CCAGAAACAGTAAATGTGGCAAAGCCA
1 CCAGTAACAGTAAATGTGACAAAGCCA
* * *
70615250 CCAGTAACAGTTAATGTGACATAGTCA
1 CCAGTAACAGTAAATGTGACAAAGCCA
70615277 CCAGT-ACAGTA
1 CCAGTAACAGTA
70615288 CTTCCTCCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 5 0.16
27 27 0.84
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (27 bp):
CCAGTAACAGTAAATGTGACAAAGCCA
Found at i:70615439 original size:27 final size:27
Alignment explanation
Indices: 70615408--70615510 Score: 95
Period size: 27 Copynumber: 3.8 Consensus size: 27
70615398 TACGAAACAT
* *
70615408 AAGGGCATAGTCGTCATTTTACCATAC
1 AAGGGCATAATCGTCATTTTACCCTAC
* * *
70615435 AAGGGTATTA-CGGTCTTTTTACCCTAC
1 AAGGGCATAATC-GTCATTTTACCCTAC
*
70615462 AGGGGCATTAAT-GTCATTTTACCCTAC
1 AAGGGCA-TAATCGTCATTTTACCCTAC
*
70615489 AAGGGCATTA-CAGTCATTTTAC
1 AAGGGCATAATC-GTCATTTTAC
70615511 AAATCGGGGG
Statistics
Matches: 60, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
26 3 0.05
27 55 0.92
28 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (27 bp):
AAGGGCATAATCGTCATTTTACCCTAC
Found at i:70615534 original size:27 final size:27
Alignment explanation
Indices: 70615490--70615604 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 27
70615480 TTACCCTACA
* * *
70615490 AGGGCATTACAGTCATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* ** *
70615517 GGGGTATTTTGGTAATTTTACAAATAG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
70615544 AGGGTATTTCAGTAATTTTACAAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
70615571 AGGGCATTTCTA-TAATTTTA-TAATCG
1 AGGGTATTTC-AGTAATTTTACAAATCG
70615597 AGGGTATT
1 AGGGTATT
70615605 AACGACCTAA
Statistics
Matches: 71, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
26 11 0.15
27 59 0.83
28 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:70615835 original size:17 final size:19
Alignment explanation
Indices: 70615805--70615844 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
70615795 CAGATTTTAT
70615805 CCATGTGGGCCCACA-GGC
1 CCATGTGGGCCCACACGGC
*
70615823 CCAT-TGGGTCCACACGGC
1 CCATGTGGGCCCACACGGC
70615841 CCAT
1 CCAT
70615845 CAAGGCCCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.17, C:0.40, G:0.28, T:0.15
Consensus pattern (19 bp):
CCATGTGGGCCCACACGGC
Found at i:70619973 original size:18 final size:19
Alignment explanation
Indices: 70619950--70619999 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
70619940 CTTGGCCCAT
*
70619950 TGCAGTAATAGTAAAT-AG
1 TGCAGTAATAGTAAATCAA
*
70619968 TGCAGTAACAGT-AATCAA
1 TGCAGTAATAGTAAATCAA
70619986 TGCAGTAATAGTAA
1 TGCAGTAATAGTAA
70620000 GCAGTATGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 3 0.11
18 23 0.85
19 1 0.04
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.26
Consensus pattern (19 bp):
TGCAGTAATAGTAAATCAA
Found at i:70620403 original size:27 final size:27
Alignment explanation
Indices: 70620338--70620433 Score: 97
Period size: 27 Copynumber: 3.6 Consensus size: 27
70620328 AGATAGGGGC
** *
70620338 AAAACAGTCATCCTACCACATAAGGGC
1 AAAACAGTCATTTTACCACATAAGGGA
*
70620365 AAAATAGTCATTTTACCACATAAGGGA
1 AAAACAGTCATTTTACCACATAAGGGA
* ** *
70620392 AAAACCGTCATTTTAATACATAA-GGC
1 AAAACAGTCATTTTACCACATAAGGGA
*
70620418 AAAACA-ACATTTTACC
1 AAAACAGTCATTTTACC
70620434 TTACATGGGT
Statistics
Matches: 56, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
25 7 0.12
26 7 0.12
27 42 0.75
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.23
Consensus pattern (27 bp):
AAAACAGTCATTTTACCACATAAGGGA
Found at i:70620455 original size:27 final size:26
Alignment explanation
Indices: 70620425--70620540 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 26
70620415 GGCAAAACAA
* * * *
70620425 CATTTTACCTTACATGGGTATTACAGT
1 CATTTTACCCTATAGGGGTATTTC-GT
70620452 CATTTTACCCTATAGGGGTATTTCGAT
1 CATTTTACCCTATAGGGGTATTTCG-T
*
70620479 CATTTTACCCTATGGGGGTATTTCGGT
1 CATTTTACCCTATAGGGGTATTTC-GT
* *
70620506 CATTTTACCCTTTGGGGGTATTTCGAT
1 CATTTTACCCTATAGGGGTATTTCG-T
70620533 CATTTTAC
1 CATTTTAC
70620541 AAGTAAATAA
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
26 2 0.03
27 77 0.96
28 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (26 bp):
CATTTTACCCTATAGGGGTATTTCGT
Found at i:70620487 original size:54 final size:54
Alignment explanation
Indices: 70620425--70620540 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
70620415 GGCAAAACAA
* *
70620425 CATTTTACCTTACATGGGTATTACAGTCATTTTACCCTATAGGGGTATTTCGAT
1 CATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTATAGGGGTATTTCGAT
** * * * *
70620479 CATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTTTGGGGGTATTTCGAT
1 CATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTATAGGGGTATTTCGAT
70620533 CATTTTAC
1 CATTTTAC
70620541 AAGTAAATAA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (54 bp):
CATTTTACCCTACAGGGGTATTACAGTCATTTTACCCTATAGGGGTATTTCGAT
Done.