Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 217 of 325
Found at i:70625499 original size:40 final size:40
Alignment explanation
Indices: 70625443--70625660 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
70625433 CGGATGATAA
* *
70625443 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
70625483 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
70625523 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
70625563 CCGGGCTAGGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
70625603 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
70625643 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70625661 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 17 0.10
40 146 0.89
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:70627839 original size:46 final size:46
Alignment explanation
Indices: 70627789--70627958 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
70627779 TTGAGCATCT
70627789 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
70627835 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* * *
70627882 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
70627928 GAGCTCGTTGAGTTGAGTTCGAGTTCGCTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70627959 GTGGCGGGTT
Statistics
Matches: 103, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 56 0.54
47 29 0.28
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:70627942 original size:93 final size:93
Alignment explanation
Indices: 70627783--70627954 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
70627773 GGATGGTTGA
* * * *
70627783 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
70627848 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
70627876 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
*
70627941 TGAGTTCGAGTTCG
66 TGAGTCCGAGTTCG
70627955 CTTAGTGGCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70633784 original size:16 final size:16
Alignment explanation
Indices: 70633763--70633794 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
70633753 GGCCGAATGT
70633763 AAGAAAGAAAAAGAAG
1 AAGAAAGAAAAAGAAG
70633779 AAGAAAGAAAAAGAAG
1 AAGAAAGAAAAAGAAG
70633795 CCATTTTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (16 bp):
AAGAAAGAAAAAGAAG
Found at i:70637513 original size:42 final size:43
Alignment explanation
Indices: 70637456--70637568 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 43
70637446 GTGATTTACG
* **
70637456 TGTAAGACCATGTCTGGGACATTGGCATC-ATATATAATTTCA
1 TGTAAGACCCTGTCTGGGACATTGGCATCTATATATAATCACA
* * * *
70637498 TGTATGACCCTGTCTGGGACAGTGGCATCTATATTTGATCACA
1 TGTAAGACCCTGTCTGGGACATTGGCATCTATATATAATCACA
*
70637541 TGTAAGACCAC-GTCTGGGACGTTGGCAT
1 TGTAAGACC-CTGTCTGGGACATTGGCAT
70637569 TGTACAAGCT
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 26 0.44
43 32 0.54
44 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACATTGGCATCTATATATAATCACA
Found at i:70643373 original size:15 final size:16
Alignment explanation
Indices: 70643350--70643397 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
70643340 TAGTATCGTA
70643350 TCTTGGGTTTCTTTAT
1 TCTTGGGTTTCTTTAT
*
70643366 TC-TGGGTTTCTCTA-
1 TCTTGGGTTTCTTTAT
*
70643380 TCTTGGATTTCTTTAT
1 TCTTGGGTTTCTTTAT
70643396 TC
1 TC
70643398 GATTTCCTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 2 0.07
15 21 0.78
16 4 0.15
ACGTcount: A:0.08, C:0.17, G:0.17, T:0.58
Consensus pattern (16 bp):
TCTTGGGTTTCTTTAT
Found at i:70643493 original size:20 final size:20
Alignment explanation
Indices: 70643468--70643507 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
70643458 TTTAGCTCGT
70643468 GATAATGATGTCAAGTCTAA
1 GATAATGATGTCAAGTCTAA
70643488 GATAATGATGTCAAGTCTAA
1 GATAATGATGTCAAGTCTAA
70643508 CTATACTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (20 bp):
GATAATGATGTCAAGTCTAA
Found at i:70645905 original size:46 final size:46
Alignment explanation
Indices: 70645855--70646020 Score: 153
Period size: 46 Copynumber: 3.6 Consensus size: 46
70645845 TCCGAACTTT
* *
70645855 TTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTTCGAACTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCCGAGCTCG
* * * * *
70645901 TTGAGTTGGGTCCAAGTTC-GTGA--GATGT-AACTAGGCATCCGAGCTCT
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC---G--TCCGAGCTCG
* * *
70645948 TTGAGTTTAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGGTCG
1 TTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCC-GAGCTCG
70645994 TTGAGTTGAGTCCGAGTTCACTTATGG
1 TTGAGTTGAGTCCGAGTTCACTTATGG
70646021 GCAGGTTACA
Statistics
Matches: 94, Mismatches: 16, Indels: 20
0.72 0.12 0.15
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
45 5 0.05
46 48 0.51
47 23 0.24
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (46 bp):
TTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCCGAGCTCG
Found at i:70646000 original size:93 final size:93
Alignment explanation
Indices: 70645841--70646012 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
70645831 AGGATATTTG
* * *
70645841 GGCATCCGAACTTTTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTTCGAACTCGTTGAG
1 GGCATCCGAACTCTTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAG
*
70645906 TTGGGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* * **
70645934 GGCATCCGAGCTCTTTGAGTTTAGTCCGAGTTCACTTATGGATGCGAACGC-CTGAGGTCGTTGA
1 GGCATCCGAACTCTTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTC-GAACTCGTTGA
*
70645998 GTTGAGTCCGAGTTC
65 GTTGAGTCCAAGTTC
70646013 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 1 0.01
93 68 0.99
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.31
Consensus pattern (93 bp):
GGCATCCGAACTCTTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCTCGAACTCGTTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:70664866 original size:23 final size:23
Alignment explanation
Indices: 70664820--70664867 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
70664810 TAATTGCATG
*
70664820 ATTTATGTATGCATGATAATTGC
1 ATTTATGTATGCATGATAAATGC
*
70664843 ATTTATTTATTGCATGA-AAATGC
1 ATTTATGTA-TGCATGATAAATGC
70664866 AT
1 AT
70664868 CTTTGATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (23 bp):
ATTTATGTATGCATGATAAATGC
Found at i:70671280 original size:42 final size:43
Alignment explanation
Indices: 70671180--70671328 Score: 155
Period size: 42 Copynumber: 3.5 Consensus size: 43
70671170 TGAAACATCG
* * *
70671180 TGTAAGAACGTGTCTGGGACACAGGCCTCGAT-TTGAAATTTACA
1 TGTAAGACCCTGTCTGGGACACAGGCATCGATATTG-AA-TTACA
* * *
70671224 TGTAAGACCATGTCTGGGACATCA-GCATC-ATATCTG-ATTTCG
1 TGTAAGACCCTGTCTGGGACA-CAGGCATCGATAT-TGAATTACA
*
70671266 TGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGAATTACA
1 TGTAAGACCCTGTCTGGGACACAGGCATCGATATTGAATTACA
70671309 TGTAAGACCAC-GTCTGGGAC
1 TGTAAGACC-CTGTCTGGGAC
70671329 GTCGGCATTG
Statistics
Matches: 89, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
41 1 0.01
42 30 0.34
43 29 0.33
44 25 0.28
45 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (43 bp):
TGTAAGACCCTGTCTGGGACACAGGCATCGATATTGAATTACA
Found at i:70671336 original size:43 final size:42
Alignment explanation
Indices: 70671219--70671336 Score: 125
Period size: 43 Copynumber: 2.8 Consensus size: 42
70671209 GATTTGAAAT
* * *
70671219 TTACATGTAAGACCATGTCTGGGACATCAGCATCATATCTGA
1 TTACATGTAAGACCACGTCTGGGACGTCGGCATCATATCTGA
* * *
70671261 TTTCGTGTAAGACC-CTGTCTGGGACAG-AGGCATCGATAT-TGAA
1 TTACATGTAAGACCAC-GTCTGGGAC-GTCGGCATC-ATATCTG-A
70671304 TTACATGTAAGACCACGTCTGGGACGTCGGCAT
1 TTACATGTAAGACCACGTCTGGGACGTCGGCAT
70671337 TGTACCCGTT
Statistics
Matches: 61, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
42 29 0.48
43 31 0.51
44 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACGTCGGCATCATATCTGA
Found at i:70675727 original size:79 final size:82
Alignment explanation
Indices: 70675616--70675800 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
70675606 GCTACTCGTT
* * *
70675616 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGAGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCG-GATCTTAACCC
* *
70675679 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
70675696 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
70675759 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
70675776 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70675801 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:70675800 original size:40 final size:40
Alignment explanation
Indices: 70675597--70675800 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
70675587 CGGAATTTAA
** *
70675597 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
70675637 CCGGTTATAGTAACTCGCACAATTGCCTTCGAGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
70675677 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70675716 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
70675756 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
70675796 CCGGA
1 CCGGA
70675801 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 90 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:70706073 original size:20 final size:18
Alignment explanation
Indices: 70706039--70706075 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
70706029 GCAACTCATA
70706039 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
70706057 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
70706076 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:70719477 original size:24 final size:25
Alignment explanation
Indices: 70719445--70719504 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
70719435 CTGGAGGCCT
* *
70719445 AGCCTTTTTTAAT-AACTAGGGCAA
1 AGCCCTTTTCAATAAACTAGGGCAA
** *
70719469 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTTCAATAAACTAGGGCAA
70719494 AGCCCTTTTCA
1 AGCCCTTTTCA
70719505 CTTCCTCCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
24 9 0.31
25 20 0.69
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTAGGGCAA
Found at i:70719584 original size:20 final size:20
Alignment explanation
Indices: 70719547--70719584 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70719537 ATATATGAAT
*
70719547 ATATCATGTGCATTTCATAC
1 ATATCATGTGCATATCATAC
*
70719567 ATATCATGTTCATATCAT
1 ATATCATGTGCATATCAT
70719585 GTCAAATCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.42
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:70727270 original size:24 final size:24
Alignment explanation
Indices: 70727224--70727297 Score: 85
Period size: 25 Copynumber: 3.0 Consensus size: 24
70727214 GTTTTATCAT
** * *
70727224 ATAACTGGAGGCCTAGCCTTTTTTA
1 ATAACTGG-GGCAAAGCCCTTTTCA
70727249 ATAACTGGGGCAAAGCCCTTTTCA
1 ATAACTGGGGCAAAGCCCTTTTCA
*
70727273 GTAAACTGGGGCAAAGCCCTTTTCA
1 AT-AACTGGGGCAAAGCCCTTTTCA
70727298 CTTCCTCCAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
24 13 0.30
25 30 0.70
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCCTTTTCA
Found at i:70729585 original size:27 final size:27
Alignment explanation
Indices: 70729555--70729756 Score: 199
Period size: 27 Copynumber: 7.4 Consensus size: 27
70729545 TTAAGTCCGT
* *
70729555 ACACTCAGTGCTATATAATCAACTCGC
1 ACACTTAGTGCTACATAATCAACTCGC
*
70729582 ACACTTAGTGCCACATAATCAAACTCGC
1 ACACTTAGTGCTACATAATC-AACTCGC
*
70729610 ACACTTAGTGCTACATAGTCAACTCGC
1 ACACTTAGTGCTACATAATCAACTCGC
** ** *
70729637 ACACTTAGTGCCGCATGGTCAATTCGC
1 ACACTTAGTGCTACATAATCAACTCGC
** **
70729664 ACACTTAGTGC-ATCATTTTCATTTCGC
1 ACACTTAGTGCTA-CATAATCAACTCGC
* ** *
70729691 ACACTTAGTGCAACATGGTCAAATCGC
1 ACACTTAGTGCTACATAATCAACTCGC
** *
70729718 ACACTTAGTGCTACATAGCCAAATCGC
1 ACACTTAGTGCTACATAATCAACTCGC
70729745 ACACTTAGTGCT
1 ACACTTAGTGCT
70729757 GTACAATTTA
Statistics
Matches: 152, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
27 126 0.83
28 26 0.17
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
ACACTTAGTGCTACATAATCAACTCGC
Found at i:70729691 original size:54 final size:54
Alignment explanation
Indices: 70729555--70729755 Score: 251
Period size: 54 Copynumber: 3.7 Consensus size: 54
70729545 TTAAGTCCGT
* * * **
70729555 ACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACTCGC
1 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-TCGC
* *
70729610 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATTCGC
1 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAATCGC
** ** *
70729664 ACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAATCGC
1 ACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAATCGC
* *
70729718 ACACTTAGTGCTACATAGCCAAATCGCACACTTAGTGC
1 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC
70729756 TGTACAATTT
Statistics
Matches: 125, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.64
55 44 0.35
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAATCGC
Found at i:70729718 original size:81 final size:81
Alignment explanation
Indices: 70729606--70729755 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
70729596 ATAATCAAAC
* * * * * *
70729606 TCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
70729671 GTGCATCATTTTCATT
66 GTGCATCATTTTCATT
* *
70729687 TCGCACACTTAGTGCAACATGGTCAAATCGCACACTTAGTGCTACATAGCCAAATCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
70729752 GTGC
66 GTGC
70729756 TGTACAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
GTGCATCATTTTCATT
Found at i:70734361 original size:21 final size:21
Alignment explanation
Indices: 70734332--70734371 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
70734322 TTCCGAAGTC
*
70734332 TGTGCTCAGAAAAATTAATAA
1 TGTGATCAGAAAAATTAATAA
*
70734353 TGTGATCAGAAAATTTAAT
1 TGTGATCAGAAAAATTAAT
70734372 GAATCAGCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.07, G:0.15, T:0.33
Consensus pattern (21 bp):
TGTGATCAGAAAAATTAATAA
Found at i:70737153 original size:40 final size:40
Alignment explanation
Indices: 70737065--70737358 Score: 391
Period size: 40 Copynumber: 7.4 Consensus size: 40
70737055 TGATAACCGA
* *
70737065 GCTAAGTACCGAAGGCATTT-TGCGCTAGTGACTAGT-TCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCG--AGTTACTA-TATCCGG
* * * *
70737106 GCTAAGTCGCGAAGGCATTTGTACGAGTTATTACATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
70737146 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
70737186 GCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
70737226 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
70737266 GCTAAGTCCCGAAGGCAATGGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
* *
70737306 GCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC-G
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGG
* *
70737344 GTTAAATCCCGAAGG
1 GCTAAGTCCCGAAGG
70737359 TACTTGGCTT
Statistics
Matches: 228, Mismatches: 22, Indels: 9
0.88 0.08 0.03
Matches are distributed among these distances:
38 15 0.07
39 15 0.07
40 177 0.78
41 18 0.08
42 3 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:70742046 original size:43 final size:43
Alignment explanation
Indices: 70741956--70742051 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 43
70741946 TTTAGGATGT
* * *
70741956 TGGCATCAATTTGAGATATTGTGTAAGACCGTGTCTGAAACAC
1 TGGCATCGATTAGAGATATTGTGTAAGACCATGTCTGAAACAC
* ** *
70741999 TGGCATCGATTAGAGATTTTGTTGTAA-ACCATGTCTGGGACAG
1 TGGCATCGATTAGAGATATTG-TGTAAGACCATGTCTGAAACAC
70742042 TGGCATCGAT
1 TGGCATCGAT
70742052 ATGTAATTAC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 40 0.89
44 5 0.11
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (43 bp):
TGGCATCGATTAGAGATATTGTGTAAGACCATGTCTGAAACAC
Found at i:70743738 original size:34 final size:33
Alignment explanation
Indices: 70743673--70743738 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
70743663 AACATAGTGT
**
70743673 CAGTACAATCTGGGCCAAAGCCTTATTCAGTAA
1 CAGTACAATCTGGGCCAAAGCCTTAAACAGTAA
* **
70743706 CAGTACAGTCTGGGCCTTAGCCCTTAAACAGTA
1 CAGTACAATCTGGGCCAAAG-CCTTAAACAGTA
70743739 GCAATATGGG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
33 17 0.63
34 10 0.37
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (33 bp):
CAGTACAATCTGGGCCAAAGCCTTAAACAGTAA
Found at i:70743848 original size:30 final size:31
Alignment explanation
Indices: 70743773--70743854 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 31
70743763 CAGTCTCGAT
*
70743773 ATAT-ACTGGGCCGAAGCCTTTTCATAAATC
1 ATATCACTAGGCCGAAGCCTTTTCATAAATC
70743803 ATATCACTAGGCCGAAGCCTTTTCATAAATC
1 ATATCACTAGGCCGAAGCCTTTTCATAAATC
*
70743834 ATATCA-TTGGCCGAAGCCTTT
1 ATATCACTAGGCCGAAGCCTTT
70743855 ACTGTAAGCG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 18 0.37
31 31 0.63
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (31 bp):
ATATCACTAGGCCGAAGCCTTTTCATAAATC
Found at i:70744102 original size:25 final size:25
Alignment explanation
Indices: 70744074--70744143 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
70744064 CTCTTTTAAT
*
70744074 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* * *
70744099 AACTGGGGCAAAGCTCGTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
70744124 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
70744144 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:70744983 original size:27 final size:26
Alignment explanation
Indices: 70744953--70745016 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
70744943 GGGCATATTC
70744953 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCAT-CAAGGGCT-TTACG
* * *
70744980 GTCACTTTACCCTCAGGGGCTTTACG
1 GTCATTTTACCATCAAGGGCTTTACG
*
70745006 GTCTTTTTACC
1 GTCATTTTACC
70745017 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 19 0.61
27 12 0.39
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (26 bp):
GTCATTTTACCATCAAGGGCTTTACG
Found at i:70745100 original size:27 final size:27
Alignment explanation
Indices: 70745070--70745289 Score: 138
Period size: 27 Copynumber: 8.1 Consensus size: 27
70745060 GTAAATCTAC
*
70745070 AAACCAAGGGTACTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
70745097 AAACCAATGGTATTTCTA-TAATTTTTT
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
70745124 AAAGTCAAGGGTATTTCTGTAATTTTGT
1 AAA-CCAAGGGTATTTCAGTAATTTTGT
* * ** **
70745152 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
*** * ***
70745179 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
** **
70745206 AAACC-AGTGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTGT
* * ** *
70745233 AAACTAGGGGTATTTTGGCAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
70745260 AAACCAAGGGTATTTTAGTAATCTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
70745287 AAA
1 AAA
70745290 TAGAGGGTAA
Statistics
Matches: 157, Mismatches: 31, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.01
27 131 0.83
28 24 0.15
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:70745281 original size:81 final size:81
Alignment explanation
Indices: 70745089--70745281 Score: 178
Period size: 81 Copynumber: 2.4 Consensus size: 81
70745079 GTACTTCAGT
* *** **
70745089 AATTTTGTAAACCAATGGTATTTCTA-TAATTTTTTAAAGTCAAGGGTATTTCTGTAATTTTGTA
1 AATTTTGTAAACCAAGGGTATTT-TAGTAATTTCACAAAG-CAAGGGTATTTCTGTAATTTTACA
*
70745153 AATCAGGGGTATTTTGGT
64 AATCAGGGGTATTTTGGC
** *** ** *
70745171 AATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAA-CCAGTGGTATTT-TGGTAATTTTACA
1 AATTTTGTAAACCAAGGGTATTTTAGTAATTTCACAAAGCAAG-GGTATTTCT-GTAATTTTACA
70745234 AA-CTAGGGGTATTTTGGC
64 AATC-AGGGGTATTTTGGC
70745252 AATTTTGTAAACCAAGGGTATTTTAGTAAT
1 AATTTTGTAAACCAAGGGTATTTTAGTAAT
70745282 CTTGTAAATA
Statistics
Matches: 85, Mismatches: 22, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
80 5 0.06
81 54 0.64
82 26 0.31
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (81 bp):
AATTTTGTAAACCAAGGGTATTTTAGTAATTTCACAAAGCAAGGGTATTTCTGTAATTTTACAAA
TCAGGGGTATTTTGGC
Found at i:70745298 original size:54 final size:55
Alignment explanation
Indices: 70745047--70745298 Score: 187
Period size: 54 Copynumber: 4.7 Consensus size: 55
70745037 TTTCATCCTA
* * * * * * **
70745047 CAAGGGTGTTTTCGTAAATCTACAAACCA-AGGGTACTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTACAAACTAGAGGGTATTTTGGTAATTTTGTAAAC
* ** * *
70745101 CAATGGTATTTCTA-TAATTTTTTAAAGTCA-AGGGTATTTCT-GTAATTTTGTAAAT
1 CAAGGGTATTT-TAGTAATTTTACAAACT-AGAGGGTATTT-TGGTAATTTTGTAAAC
* * * * ***
70745156 CAGGGGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTAGTAATTTTACAAACTAGAGGGTATTTTGGTAATTTTGTAAAC
* *
70745210 C-AGTGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGCAATTTTGTAAAC
1 CAAG-GGTATTTTAGTAATTTTACAAACTAGAGGGTATTTTGGTAATTTTGTAAAC
* **
70745264 CAAGGGTATTTTAGTAATCTTGTAAA-TAGAGGGTA
1 CAAGGGTATTTTAGTAATTTTACAAACTAGAGGGTA
70745299 AAACGATAAT
Statistics
Matches: 154, Mismatches: 34, Indels: 20
0.74 0.16 0.10
Matches are distributed among these distances:
53 4 0.03
54 104 0.68
55 46 0.30
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.38
Consensus pattern (55 bp):
CAAGGGTATTTTAGTAATTTTACAAACTAGAGGGTATTTTGGTAATTTTGTAAAC
Found at i:70745308 original size:27 final size:27
Alignment explanation
Indices: 70745286--70745433 Score: 206
Period size: 27 Copynumber: 5.5 Consensus size: 27
70745276 AGTAATCTTG
* *
70745286 TAAATAGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
70745313 TAAATCGAGGGTAAAACGGTAAATCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
** *
70745340 TAAATTAAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
70745367 TAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
70745394 TAAATTGAGGGTAAAACGGTAATTCTG
1 TAAATCGAGGGTAAAACGGTAATTCTA
70745421 TAAATCGAGGGTA
1 TAAATCGAGGGTA
70745434 CTTTGATAAT
Statistics
Matches: 104, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 104 1.00
ACGTcount: A:0.43, C:0.08, G:0.22, T:0.27
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGGTAATTCTA
Found at i:70745325 original size:81 final size:81
Alignment explanation
Indices: 70745257--70745433 Score: 212
Period size: 81 Copynumber: 2.2 Consensus size: 81
70745247 TTGGCAATTT
*** *
70745257 TGTAAACCAAGGGTATTTTAGTAA-TCTTGTAAATAGAGGGTAAAACGATAATTCTATAAATCGA
1 TGTAAACCAAGGGTAAAATAGTAATTC-TATAAATAGAGGGTAAAACGATAATTCTATAAATCGA
*
70745321 GGGTAAAACGGTAAATC
65 GGGTAAAACGGCAAATC
** * * *
70745338 TGTAAATTAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGATAATTCTATAAATTGAG
1 TGTAAACCAAGGGTAAAATAGTAATTCTATAAATAGAGGGTAAAACGATAATTCTATAAATCGAG
* *
70745403 GGTAAAACGGTAATTC
66 GGTAAAACGGCAAATC
* *
70745419 TGTAAATCGAGGGTA
1 TGTAAACCAAGGGTA
70745434 CTTTGATAAT
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 81 0.98
82 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (81 bp):
TGTAAACCAAGGGTAAAATAGTAATTCTATAAATAGAGGGTAAAACGATAATTCTATAAATCGAG
GGTAAAACGGCAAATC
Found at i:70749952 original size:47 final size:46
Alignment explanation
Indices: 70749884--70750008 Score: 153
Period size: 47 Copynumber: 2.7 Consensus size: 46
70749874 ATCGATAAGA
* * * *
70749884 ACCTATACATAGCCCGTAGCCAAATCAAGGTAACTTATCCCAGAGT
1 ACCTATACATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAAT
** * *
70749930 ACCTATACCATGGCCCGTAGCCAAATCAAGGTAGGTCCTCTCAAAAT
1 ACCTATA-CATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAAT
70749977 ACCTATACATTGGCCC-TAGCCAAATCAAGGTA
1 ACCTATACA-TGGCCCGTAGCCAAATCAAGGTA
70750009 TTATTCGCGC
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
46 25 0.36
47 44 0.64
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.22
Consensus pattern (46 bp):
ACCTATACATGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAAT
Found at i:70750332 original size:42 final size:42
Alignment explanation
Indices: 70750273--70750358 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
70750263 AGAAACAACG
70750273 AAACTAGTCGATTAATCGAGCACTTTGTTCTTGCATCGATCT
1 AAACTAGTCGATTAATCGAGCACTTTGTTCTTGCATCGATCT
* *
70750315 AAACTAGTCGATTAATCGAGTACTTTGTTCTTGCCTCGATCT
1 AAACTAGTCGATTAATCGAGCACTTTGTTCTTGCATCGATCT
70750357 AA
1 AA
70750359 GTCCAAAATC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (42 bp):
AAACTAGTCGATTAATCGAGCACTTTGTTCTTGCATCGATCT
Found at i:70755592 original size:28 final size:28
Alignment explanation
Indices: 70755529--70755651 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
70755519 ATATTAAGTC
*
70755529 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
70755556 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70755584 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
70755612 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
70755641 CGCACACTTAG
1 CGCACACTTAG
70755652 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70768121 original size:79 final size:82
Alignment explanation
Indices: 70768010--70768194 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
70768000 GCTACTCGTT
* * *
70768010 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
70768073 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
70768090 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
70768153 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
70768170 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
70768195 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:70768194 original size:40 final size:40
Alignment explanation
Indices: 70767991--70768194 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
70767981 CGGAATTTAA
** *
70767991 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
70768031 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
70768071 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
70768110 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
70768150 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
70768190 CCGGA
1 CCGGA
70768195 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:70772124 original size:37 final size:37
Alignment explanation
Indices: 70772081--70772188 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
70772071 GCTCGGACGT
* *
70772081 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
70772118 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
70772155 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
70772189 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:70772403 original size:47 final size:47
Alignment explanation
Indices: 70772351--70772771 Score: 637
Period size: 47 Copynumber: 9.0 Consensus size: 47
70772341 TTTCACACTA
* * * * * *
70772351 GCCATTCGGCTTTACCGCATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
70772398 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
70772445 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
70772492 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
70772539 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
70772586 GCCATTCGG-CTTCATCACATATATGCATGTTCACATTCATCACATAG
1 GCCATTCGGCCTT-ATCACATATATGCATGTTCACATTCATCACATTG
* * *
70772633 GCCATTCTGCCTTATCACATATATGCATGTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
70772680 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
70772727 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
70772772 AAAATCCTAA
Statistics
Matches: 339, Mismatches: 33, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
46 3 0.01
47 333 0.98
48 3 0.01
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:70772550 original size:141 final size:141
Alignment explanation
Indices: 70772368--70772772 Score: 722
Period size: 141 Copynumber: 2.9 Consensus size: 141
70772358 GGCTTTACCG
*
70772368 CATATATGCATTTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
1 CATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
* * *
70772433 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTGGCCATT
66 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGCCATT
70772498 CGGCCTCATCA
131 CGGCCTCATCA
*
70772509 CATATATGCATGTTCACATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
1 CATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
70772574 TTCATCACATTGGCCATTCGG-CTTCATCACATATATGCATGTTCACATTCATCACATAGGCCAT
66 TTCATCACATTGGCCATTCGGCCTT-ATCACATATATGCATGTTCACATTCATCACATAGGCCAT
* *
70772638 TCTGCCTTATCA
130 TCGGCCTCATCA
70772650 CATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
1 CATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
*
70772715 TTCATCACATTGGCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACATA
66 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATA
70772773 AAATCCTAAA
Statistics
Matches: 253, Mismatches: 9, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
140 3 0.01
141 248 0.98
142 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (141 bp):
CATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATAGGCCATT
CGGCCTCATCA
Found at i:70778483 original size:68 final size:68
Alignment explanation
Indices: 70778411--70778594 Score: 250
Period size: 68 Copynumber: 2.7 Consensus size: 68
70778401 CATCATGTGT
* * *
70778411 ACAAGAAG-GCTA-TGAGATACTATATAGTAGCTAGGTCACATTTGTGATACGAGATGTATCCCA
1 ACAAGAAGAGCTACTGAGAGA-TAAAT-GTAGCTAGGTCACATGTGTGATACGAGATGTATCCCA
70778474 TGTAG
64 TGTAG
*
70778479 ACAAG-AGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCAT
1 ACAAGAAGAGCTAC-TGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGAGATGTATCCCAT
70778543 GTAG
65 GTAG
* *
70778547 ACAAG-AGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGAT
1 ACAAGAAGAGCTAC-TGAGAGATAAATGTAGCTAGGTCACATGTGTGAT
70778595 TCCAAGTGAA
Statistics
Matches: 107, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
67 2 0.02
68 95 0.89
69 4 0.04
70 6 0.06
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (68 bp):
ACAAGAAGAGCTACTGAGAGATAAATGTAGCTAGGTCACATGTGTGATACGAGATGTATCCCATG
TAG
Found at i:70782314 original size:27 final size:26
Alignment explanation
Indices: 70782266--70782325 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
70782256 GCGAGGCTGC
* *
70782266 CAGATATTGTGACGATGTCACCAGATA
1 CAGATATTGTGACGACGCCACCAGA-A
* *
70782293 CAGATATTGTGGCTACGCCACCAGAA
1 CAGATATTGTGACGACGCCACCAGAA
*
70782319 CGGATAT
1 CAGATAT
70782326 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGACGCCACCAGAA
Found at i:70786359 original size:9 final size:9
Alignment explanation
Indices: 70786345--70786369 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
70786335 CATATTTCAT
70786345 AAATTCACA
1 AAATTCACA
70786354 AAATTCACA
1 AAATTCACA
70786363 AAATTCA
1 AAATTCA
70786370 ATTCAACCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (9 bp):
AAATTCACA
Found at i:70787211 original size:47 final size:46
Alignment explanation
Indices: 70787142--70787312 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
70787132 TTTGTGAGCT
70787142 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGAGAACC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTGATGAGAACC
* * *
70787188 AGTGTAAGACCATGTCTGAGACATGGCATCGG--CATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCCATT--GATGAGAACC
*
70787236 AGTGTAAGACATGTCTGGGACATGCATCGG-CC-TCGA-GACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGATGA-G-AA-CC
* * *
70787282 AATGTAAGACATGTGTGGGACATGAATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
70787313 TACGAGATGA
Statistics
Matches: 105, Mismatches: 10, Indels: 19
0.78 0.07 0.14
Matches are distributed among these distances:
43 2 0.02
44 3 0.03
45 5 0.05
46 45 0.43
47 27 0.26
48 23 0.22
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGATGAGAACC
Found at i:70787381 original size:47 final size:45
Alignment explanation
Indices: 70787136--70787407 Score: 228
Period size: 47 Copynumber: 5.8 Consensus size: 45
70787126 CATTTGTTTG
* *
70787136 TGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC-C-ACATTA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGA-TA
* *
70787180 TGAGAACCAGTGTAAGACCATGTCTGAGACATGGCATCGGCATTGAGATGA
1 TGAG--CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCGAGAT-A
* **
70787231 -GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTCGAGATA
* * * *
70787276 TAAGCCAATGTAAGACATGTGTGGGACATGAATCGGCTACGAGATGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGAT-A
* * * * *
70787323 T-AGTCAATGTAAGACCATGTCTGGGACATGGCATCGACTTGATATA
1 TGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTCGAGATA
**
70787369 TGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
70787408 ACCTTGCCCA
Statistics
Matches: 188, Mismatches: 25, Indels: 27
0.78 0.10 0.11
Matches are distributed among these distances:
44 4 0.02
45 2 0.01
46 71 0.38
47 79 0.42
48 25 0.13
50 4 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (45 bp):
TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATA
Found at i:70787396 original size:140 final size:141
Alignment explanation
Indices: 70787144--70787407 Score: 365
Period size: 140 Copynumber: 1.9 Consensus size: 141
70787134 TGTGAGCTAG
* * *
70787144 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAACCAGTGTAAGACCATGTCTGAGA
1 TGTAAGACATGTCTGGGACATGAATCGGCCACATGATGAGAACCAATGTAAGACCATGTCTGAGA
*
70787209 CATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAG
66 CATGGCATCGACATTGAGATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAG
70787273 ACGTAAGCCAA
131 ACGTAAGCCAA
* * * ** *
70787284 TGTAAGACATGTGTGGGACATGAATCGGCTACGA-GATGATAGTCAATGTAAGACCATGTCTGGG
1 TGTAAGACATGTCTGGGACATGAATCGGCCAC-ATGATGAGAACCAATGTAAGACCATGTCTGAG
* *
70787348 ACATGGCATCGAC-TTGATAT-ATGAGTTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65 ACATGGCATCGACATTGAGATGA-GAGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGC
70787408 ACCTTGCCCA
Statistics
Matches: 108, Mismatches: 12, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
138 1 0.01
139 19 0.18
140 79 0.73
141 9 0.08
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (141 bp):
TGTAAGACATGTCTGGGACATGAATCGGCCACATGATGAGAACCAATGTAAGACCATGTCTGAGA
CATGGCATCGACATTGAGATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAG
ACGTAAGCCAA
Found at i:70801870 original size:17 final size:17
Alignment explanation
Indices: 70801823--70801870 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
70801813 TACTTTAGCC
*
70801823 ATTTATTTTTCTTGTAAT
1 ATTTATTTTT-TTTTAAT
* *
70801841 -TTTATTTTATTTTATT
1 ATTTATTTTTTTTTAAT
70801857 ATTTATTTTTTTTT
1 ATTTATTTTTTTTT
70801871 CGCTCTCTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
16 5 0.20
17 20 0.80
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (17 bp):
ATTTATTTTTTTTTAAT
Found at i:70804888 original size:22 final size:23
Alignment explanation
Indices: 70804857--70804899 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
70804847 GGGTGAACTT
70804857 GATAGGAAAAACACGGGTGTGGG
1 GATAGGAAAAACACGGGTGTGGG
*
70804880 GATA-GAAAACCACGGGTGTG
1 GATAGGAAAAACACGGGTGTG
70804900 CCACGAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.35, C:0.12, G:0.40, T:0.14
Consensus pattern (23 bp):
GATAGGAAAAACACGGGTGTGGG
Found at i:70808406 original size:47 final size:47
Alignment explanation
Indices: 70808299--70808824 Score: 845
Period size: 47 Copynumber: 11.1 Consensus size: 47
70808289 GAAATGATAG
* *
70808299 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGA
* * **
70808348 TACGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* **
70808395 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70808442 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70808489 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
70808536 TAGGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGCGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70808583 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70808630 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
70808677 TAAGGCCTAATAGCCGAGGTGATGAATGTGAAAGTGTATGTGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70808724 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
70808771 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
70808818 CAAGGCC
1 TAAGGCC
70808825 GAGTGGCCAA
Statistics
Matches: 457, Mismatches: 20, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
47 422 0.92
49 35 0.08
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:70809056 original size:37 final size:37
Alignment explanation
Indices: 70808987--70809065 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
70808977 CCGAGCTCTA
* * * * *
70808987 AAGACCCGGTGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
*
70809024 AAGACCCGATAACTTCGTATGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
70809061 AAGAC
1 AAGAC
70809066 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTATGGAGATTATGTCCGGGT
Found at i:70811421 original size:6 final size:5
Alignment explanation
Indices: 70811396--70811504 Score: 91
Period size: 5 Copynumber: 20.8 Consensus size: 5
70811386 GAATCCTCTT
70811396 TTTTA TTTTA TTTTA -TTTA TTCTTA TTTTTA TTTTA TTTTA -TTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA TTTTA
* *
70811446 TTTTTC TTTTGA TTTTTA TTTTTA TTTTTA TTTTCA TTTCAA TTTTA --TTA
1 -TTTTA TTTT-A -TTTTA -TTTTA -TTTTA TTTT-A TTT-TA TTTTA TTTTA
70811496 TTTTA TTTT
1 TTTTA TTTT
70811505 GAAAAACATA
Statistics
Matches: 89, Mismatches: 4, Indels: 22
0.77 0.03 0.19
Matches are distributed among these distances:
3 3 0.03
4 8 0.09
5 41 0.46
6 31 0.35
7 6 0.07
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:70811426 original size:26 final size:25
Alignment explanation
Indices: 70811395--70811504 Score: 123
Period size: 26 Copynumber: 4.2 Consensus size: 25
70811385 TGAATCCTCT
70811395 TTTTTATTTTATTTTATTTATTCTTA
1 TTTTTATTTTATTTTATTTATT-TTA
70811421 TTTTTATTTTATTTTATTTATTTTA
1 TTTTTATTTTATTTTATTTATTTTA
*
70811446 TTTTTCTTTTGATTTTTATTTTTATTTTTA
1 TTTTTATTTT-A-TTTTA--TTTA-TTTTA
* *
70811476 TTTTCATTTCAATTTTA-TTATTTTA
1 TTTTTATTT-TATTTTATTTATTTTA
70811501 TTTT
1 TTTT
70811505 GAAAAACATA
Statistics
Matches: 74, Mismatches: 4, Indels: 13
0.81 0.04 0.14
Matches are distributed among these distances:
25 21 0.28
26 26 0.35
27 5 0.07
29 9 0.12
30 13 0.18
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (25 bp):
TTTTTATTTTATTTTATTTATTTTA
Found at i:70811464 original size:18 final size:18
Alignment explanation
Indices: 70811395--70811484 Score: 72
Period size: 18 Copynumber: 5.5 Consensus size: 18
70811385 TGAATCCTCT
70811395 TTTTTA-TTTTATTTT-A
1 TTTTTATTTTTATTTTGA
* *
70811411 --TTTATTCTTATTTTTA
1 TTTTTATTTTTATTTTGA
70811427 -TTTTA-TTTTA-TTT-A
1 TTTTTATTTTTATTTTGA
*
70811441 -TTTTATTTTTCTTTTGA
1 TTTTTATTTTTATTTTGA
*
70811458 TTTTTATTTTTATTTTTA
1 TTTTTATTTTTATTTTGA
*
70811476 TTTTCATTT
1 TTTTTATTT
70811485 CAATTTTATT
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
14 10 0.16
15 15 0.25
16 8 0.13
17 5 0.08
18 23 0.38
ACGTcount: A:0.17, C:0.03, G:0.01, T:0.79
Consensus pattern (18 bp):
TTTTTATTTTTATTTTGA
Found at i:70815301 original size:22 final size:25
Alignment explanation
Indices: 70815257--70815303 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
70815247 TAATAAAATA
70815257 TAAAATTATATTTAATAATTAATTT
1 TAAAATTATATTTAATAATTAATTT
*
70815282 TAAAA-TAT-TTTATTAA-TAATTT
1 TAAAATTATATTTAATAATTAATTT
70815304 AGATTTTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 7 0.33
24 3 0.14
25 5 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
TAAAATTATATTTAATAATTAATTT
Found at i:70824620 original size:18 final size:19
Alignment explanation
Indices: 70824580--70824626 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 19
70824570 GGTCATTTCC
70824580 CTCTTCATCGTAAACCAAG
1 CTCTTCATCGTAAACCAAG
*
70824599 -TCTTCATTGTAAACC-AG
1 CTCTTCATCGTAAACCAAG
*
70824616 CTCTTCTTCGT
1 CTCTTCATCGT
70824627 TGCTACCCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 2 0.08
18 22 0.92
ACGTcount: A:0.23, C:0.30, G:0.11, T:0.36
Consensus pattern (19 bp):
CTCTTCATCGTAAACCAAG
Found at i:70828224 original size:48 final size:48
Alignment explanation
Indices: 70827918--70828238 Score: 251
Period size: 48 Copynumber: 6.7 Consensus size: 48
70827908 AGGGTGAGTT
* * * * * *
70827918 GTCGATTCCATGTTCCAAACATGGTCCTATACTAGCTCACATGTCGA-G
1 GTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC-ATG
* * ** *
70827966 GCCGATGCCATGTCCCAGAA-ATGATCTTACACTAGCTCTTGTCTCAAT-
1 GTCGATGCCATGTCCCA-AACATGGTCTTACACTAGCTCTCATATC-ATG
* * *
70828014 GTCTG-TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GTC-GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCAT-ATCATG
* * * * * *
70828062 GTCGATGTCATCTCCTATACATGGTCTTACACTAGCGCACATATCAAT-
1 GTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATC-ATG
* * * * *
70828110 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAACATC
1 GTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCATG
* * * * *
70828158 GCCAATGACATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTG
1 GTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCATG
*
70828206 GTCGATGCCATGTCCCAAACGTAGG-CTTACACT
1 GTCGATGCCATGTCCCAAACAT-GGTCTTACACT
70828239 GGCACACATA
Statistics
Matches: 213, Mismatches: 49, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
47 7 0.03
48 199 0.93
49 7 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCATG
Found at i:70828235 original size:144 final size:142
Alignment explanation
Indices: 70827918--70828251 Score: 350
Period size: 144 Copynumber: 2.3 Consensus size: 142
70827908 AGGGTGAGTT
* * * * * * * *
70827918 GTCGATTCCATGTTCCAAACATGGTCCTATACTAGCTCACATGTCGAGGCCGATGCCATGTCCCA
1 GTCGATGCCATCTCCCAAACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCA
* * ** * * *
70827983 GAAATGATCTTACACTAGCTCTTGTCTCAATGTCTGTGCCATGTCCCAGACATGGTCTTACACTG
66 GAAATGATCTTACACTAGCTC-T-TCACAATGCCAATGACATGTCCCAAACATGGTCTTACACTA
70828048 GCTCTCATAATGTG
129 GCTCTCATAATGTG
* * * * *
70828062 GTCGATGTCATCTCCTATACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCA
1 GTCGATGCCATCTCCCAAACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCA
* * *
70828127 GACATGGTCTTACACTAGCTC-TCACAACATCGCCAATGACATGTTCCAAACATGGTCTTACACT
66 GAAATGATCTTACACTAGCTCTTCAC-A-AT-GCCAATGACATGTCCCAAACATGGTCTTACACT
70828191 AGCTCTCAT-ATCGTG
128 AGCTCTCATAAT-GTG
* * *
70828206 GTCGATGCCATGTCCCAAACGTAGG-CTTACACTGGCACACATATCA
1 GTCGATGCCATCTCCCAAACAT-GGTCTTACACTAGCACACATATCA
70828252 CCCAAATGTC
Statistics
Matches: 156, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
141 3 0.02
142 1 0.01
143 4 0.03
144 146 0.94
145 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (142 bp):
GTCGATGCCATCTCCCAAACATGGTCTTACACTAGCACACATATCAAGGCCGATGCCATGTCCCA
GAAATGATCTTACACTAGCTCTTCACAATGCCAATGACATGTCCCAAACATGGTCTTACACTAGC
TCTCATAATGTG
Found at i:70832919 original size:15 final size:15
Alignment explanation
Indices: 70832901--70832934 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
70832891 TTTATTTTAC
70832901 TTTCATTTCCTTTCA
1 TTTCATTTCCTTTCA
*
70832916 TTTCATTTCCTTTCC
1 TTTCATTTCCTTTCA
70832931 TTTC
1 TTTC
70832935 CTTAGGAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.09, C:0.29, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTCATTTCCTTTCA
Found at i:70832937 original size:10 final size:10
Alignment explanation
Indices: 70832900--70832934 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
70832890 ATTTATTTTA
70832900 CTTTCATTTC
1 CTTTCATTTC
70832910 CTTTCATTTC
1 CTTTCATTTC
* *
70832920 ATTTCCTTTC
1 CTTTCATTTC
70832930 CTTTC
1 CTTTC
70832935 CTTAGGAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.09, C:0.31, G:0.00, T:0.60
Consensus pattern (10 bp):
CTTTCATTTC
Found at i:70834454 original size:20 final size:20
Alignment explanation
Indices: 70834425--70834462 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70834415 ACTCACAAGA
*
70834425 TGTATGGGTAGAAATGGACT
1 TGTATCGGTAGAAATGGACT
*
70834445 TGTATCGGTAGAAGTGGA
1 TGTATCGGTAGAAATGGA
70834463 TGTAACAGCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.05, G:0.37, T:0.29
Consensus pattern (20 bp):
TGTATCGGTAGAAATGGACT
Found at i:70835244 original size:13 final size:12
Alignment explanation
Indices: 70835218--70835250 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
70835208 GTTATTAATG
70835218 TTTTATTA-AAA
1 TTTTATTATAAA
70835229 TTTTATTATGAAA
1 TTTTATTAT-AAA
70835242 TTTTATTAT
1 TTTTATTAT
70835251 TTAGATAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
13 12 0.60
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (12 bp):
TTTTATTATAAA
Found at i:70841491 original size:13 final size:13
Alignment explanation
Indices: 70841473--70841497 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70841463 TGGAAAATGA
70841473 TTGGGGTTGGGGG
1 TTGGGGTTGGGGG
70841486 TTGGGGTTGGGG
1 TTGGGGTTGGGG
70841498 TTGAGATAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32
Consensus pattern (13 bp):
TTGGGGTTGGGGG
Found at i:70844202 original size:19 final size:20
Alignment explanation
Indices: 70844178--70844224 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
70844168 TATTGTTATT
*
70844178 ATATTTATAATTATAATA-A
1 ATATTTATAATTAAAATATA
*
70844197 ATATTTATTATTAAAATATTA
1 ATATTTATAATTAAAATA-TA
70844218 ATATTTA
1 ATATTTA
70844225 ATATTTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 16 0.67
21 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATATTTATAATTAAAATATA
Found at i:70844274 original size:15 final size:17
Alignment explanation
Indices: 70844249--70844285 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
70844239 ATGTAAAGAA
70844249 TATTATTTAAAATT-AT
1 TATTATTTAAAATTCAT
70844265 TATT-TTTAAAATTCAT
1 TATTATTTAAAATTCAT
70844281 TATTA
1 TATTA
70844286 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
TATTATTTAAAATTCAT
Found at i:70846825 original size:25 final size:24
Alignment explanation
Indices: 70846781--70846827 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
70846771 TATTATATAT
70846781 AATAAAACAAATAAAGAAAGAATA
1 AATAAAACAAATAAAGAAAGAATA
*
70846805 AATAAATAGAAATAGAA-AAAGAA
1 AATAAA-ACAAATA-AAGAAAGAA
70846828 AGCCAAAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 6 0.30
25 12 0.60
26 2 0.10
ACGTcount: A:0.74, C:0.02, G:0.11, T:0.13
Consensus pattern (24 bp):
AATAAAACAAATAAAGAAAGAATA
Found at i:70846884 original size:17 final size:17
Alignment explanation
Indices: 70846858--70846890 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70846848 AGAGAAGGAA
*
70846858 AGAAATAAAAGAGAAAG
1 AGAAAGAAAAGAGAAAG
70846875 AGAAAGAAAAGAGAAA
1 AGAAAGAAAAGAGAAA
70846891 AGGTTAGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (17 bp):
AGAAAGAAAAGAGAAAG
Found at i:70851133 original size:24 final size:24
Alignment explanation
Indices: 70851088--70851134 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
70851078 TATATATACC
70851088 AATTCAATCAATATAAATTCAATA
1 AATTCAATCAATATAAATTCAATA
70851112 AATTC-ATCACATACTAAA-TCAAT
1 AATTCAATCA-ATA-TAAATTCAAT
70851135 CCATTTCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATATAAATTCAATA
Found at i:70851893 original size:5 final size:5
Alignment explanation
Indices: 70851883--70851931 Score: 89
Period size: 5 Copynumber: 9.8 Consensus size: 5
70851873 TTGTTTTTAT
*
70851883 TATAA TATAA TATAA TATAA TATAA TATAG TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
70851932 CTTAATTCTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 42 1.00
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:70853719 original size:63 final size:63
Alignment explanation
Indices: 70853558--70853728 Score: 173
Period size: 63 Copynumber: 2.7 Consensus size: 63
70853548 ATCCCTAAAG
** * * ** *
70853558 AATGTGTTGATGCAGGGAATAATTACGCGTGC-TGTGGTGCTTATGTAAAATAAACTAGTGCTG
1 AATGTGTTGATGCAGGGAATAATTGTGCGT-CTTGTGGTGCTTGTGTAAAATAAACCAAAGCTA
** * * * * * *
70853621 GTTATGTTGATGCAGAGAATGATTGTGCATGTTGTGGTACTTGTGTAAAATAAACCAAAGCTA
1 AATGTGTTGATGCAGGGAATAATTGTGCGTCTTGTGGTGCTTGTGTAAAATAAACCAAAGCTA
* *
70853684 AATGTGTTGATGCAGGGAATAAGTGTGCGTCTTGTGATGCTTGTG
1 AATGTGTTGATGCAGGGAATAATTGTGCGTCTTGTGGTGCTTGTG
70853729 ACAAAAAAAT
Statistics
Matches: 82, Mismatches: 25, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
63 82 1.00
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.33
Consensus pattern (63 bp):
AATGTGTTGATGCAGGGAATAATTGTGCGTCTTGTGGTGCTTGTGTAAAATAAACCAAAGCTA
Found at i:70855690 original size:19 final size:19
Alignment explanation
Indices: 70855668--70855704 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70855658 CATAAAACCT
*
70855668 TTGACATGACATGAAAATC
1 TTGACATGAAATGAAAATC
*
70855687 TTGAGATGAAATGAAAAT
1 TTGACATGAAATGAAAAT
70855705 GACTTGAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.08, G:0.19, T:0.27
Consensus pattern (19 bp):
TTGACATGAAATGAAAATC
Found at i:70855772 original size:17 final size:17
Alignment explanation
Indices: 70855750--70855786 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
70855740 GTTACTTGAT
70855750 TGATATGAAGATTTTGG
1 TGATATGAAGATTTTGG
70855767 TGATATGAAGATTTTGG
1 TGATATGAAGATTTTGG
70855784 TGA
1 TGA
70855787 CTAACATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.30, T:0.41
Consensus pattern (17 bp):
TGATATGAAGATTTTGG
Found at i:70856782 original size:22 final size:21
Alignment explanation
Indices: 70856732--70856784 Score: 81
Period size: 20 Copynumber: 2.5 Consensus size: 21
70856722 GTTCTAGGGT
70856732 CACACGGGCGTTTCCCTTGGA
1 CACACGGGCGTTTCCCTTGGA
*
70856753 C-CACGGGCGTTTCTCTTGGA
1 CACACGGGCGTTTCCCTTGGA
70856773 CCACACGGGCGT
1 -CACACGGGCGT
70856785 GTAAACCCTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 18 0.62
21 2 0.07
22 9 0.31
ACGTcount: A:0.13, C:0.34, G:0.30, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTTTCCCTTGGA
Found at i:70862567 original size:5 final size:5
Alignment explanation
Indices: 70862559--70862612 Score: 56
Period size: 5 Copynumber: 10.6 Consensus size: 5
70862549 TGGTAACTTA
* * *
70862559 TTTAT TTTAGA TTTAT TTTAT TTTATT TTTAT TTGAT TGT-T TTTAT TTTAT
1 TTTAT TTTA-T TTTAT TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT
70862610 TTT
1 TTT
70862613 TGGAAGTGAC
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
4 3 0.08
5 28 0.70
6 9 0.22
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:70862596 original size:25 final size:27
Alignment explanation
Indices: 70862559--70862613 Score: 80
Period size: 25 Copynumber: 2.1 Consensus size: 27
70862549 TGGTAACTTA
70862559 TTTATTTTAGATT-TATTTTATTTTATT
1 TTTATTTTAGATTGT-TTTTATTTTATT
70862586 TTTA-TTT-GATTGTTTTTATTTTATT
1 TTTATTTTAGATTGTTTTTATTTTATT
70862611 TTT
1 TTT
70862614 GGAAGTGACG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 19 0.70
26 4 0.15
27 4 0.15
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.76
Consensus pattern (27 bp):
TTTATTTTAGATTGTTTTTATTTTATT
Found at i:70885148 original size:12 final size:13
Alignment explanation
Indices: 70885126--70885154 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
70885116 TTTATATTAT
70885126 ATAACATAAATAA
1 ATAACATAAATAA
70885139 ATAA-ATAAATAA
1 ATAACATAAATAA
70885151 ATAA
1 ATAA
70885155 GGGAAAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAACATAAATAA
Found at i:70887607 original size:45 final size:46
Alignment explanation
Indices: 70887510--70887618 Score: 141
Period size: 45 Copynumber: 2.3 Consensus size: 46
70887500 AGCTTAAGAT
**
70887510 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAG-GTAAATATGTGATAAGGC
*
70887557 CGAATGGCCAATGTGAT-ATATGTGTAA-GTAAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGGTAAATATGTGATAAGGC
*
70887602 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
70887619 AAAGTGTGCA
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
45 26 0.46
46 6 0.11
47 24 0.43
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.28
Consensus pattern (46 bp):
CGAATGGCCAATGTGATGAATGTGAAAGGTAAATATGTGATAAGGC
Found at i:70891611 original size:46 final size:45
Alignment explanation
Indices: 70891561--70891823 Score: 228
Period size: 46 Copynumber: 5.7 Consensus size: 45
70891551 GGCATATGAA
* * *
70891561 CTCGTTGATTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGAG
** *** * *
70891607 CTCGTTGAGTTGAGTTTGAGTTCGAGAGATGTAACTAG-GCA-TCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCGAG
*
70891654 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGAG
*** * *
70891700 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCGAG
* *
70891747 CTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCGAG
*
70891793 CTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70891824 GCGGGTTACA
Statistics
Matches: 172, Mismatches: 31, Indels: 28
0.74 0.13 0.12
Matches are distributed among these distances:
43 2 0.01
44 6 0.03
45 2 0.01
46 90 0.52
47 62 0.36
48 2 0.01
49 6 0.03
50 2 0.01
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (45 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCGAG
Found at i:70891661 original size:47 final size:47
Alignment explanation
Indices: 70891601--70891769 Score: 209
Period size: 47 Copynumber: 3.6 Consensus size: 47
70891591 GATGCGAATG
* **
70891601 TCCGAACTCGTTGAGTTGAGTTTGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
*** * * * *
70891648 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGAACGC-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-AC-TAGGCA
70891695 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
70891741 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
70891770 ACTTGTGGAT
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
45 3 0.03
46 34 0.34
47 60 0.60
48 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.31, T:0.28
Consensus pattern (47 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:70891710 original size:93 final size:93
Alignment explanation
Indices: 70891561--70891816 Score: 440
Period size: 93 Copynumber: 2.8 Consensus size: 93
70891551 GGCATATGAA
* * * * * **
70891561 CTCGTTGATTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTGAGTTTGA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGAGTCCGA
70891626 GTTCGAGAGATGTAACTAGGCATCCGAG
66 GTTCGAGAGATGTAACTAGGCATCCGAG
70891654 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGAGTCCGA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGAGTCCGA
70891719 GTTCGAGAGATGTAACTAGGCATCCGAG
66 GTTCGAGAGATGTAACTAGGCATCCGAG
*
70891747 CTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTCGTTGAGTTGAGTCCGA
1 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGAGTCCGA
70891812 GTTCG
66 GTTCG
70891817 CTTATGGGCG
Statistics
Matches: 155, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 155 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGTTGAGTCCGA
GTTCGAGAGATGTAACTAGGCATCCGAG
Found at i:70894194 original size:22 final size:21
Alignment explanation
Indices: 70894144--70894195 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
70894134 AAATAATAAA
* *
70894144 AAATAATCAAAATTTATTATT
1 AAATAATTAAAATTCATTATT
70894165 AAATTAATTAAAATTCATTATGT
1 AAA-TAATTAAAATTCATTAT-T
*
70894188 TAATAATT
1 AAATAATT
70894196 TAAGTACAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 3 0.12
22 20 0.77
23 3 0.12
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (21 bp):
AAATAATTAAAATTCATTATT
Found at i:70895767 original size:39 final size:39
Alignment explanation
Indices: 70895708--70895786 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
70895698 ACAAGTTAGT
*
70895708 CACAGAATCTTATATGAATATCAAGTAAACATAGATGAG
1 CACAGAATCTCATATGAATATCAAGTAAACATAGATGAG
*
70895747 CACATAATCTCATATGAATATCAAGTAAACATAGATGAG
1 CACAGAATCTCATATGAATATCAAGTAAACATAGATGAG
70895786 C
1 C
70895787 CCAGCACATT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (39 bp):
CACAGAATCTCATATGAATATCAAGTAAACATAGATGAG
Found at i:70895784 original size:21 final size:21
Alignment explanation
Indices: 70895721--70895784 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
70895711 AGAATCTTAT
70895721 ATGAATATCAAGTAAACATAG
1 ATGAATATCAAGTAAACATAG
** * *
70895742 ATGAGCA-C-A-TAATC-TCAT
1 ATGAATATCAAGTAAACAT-AG
70895760 ATGAATATCAAGTAAACATAG
1 ATGAATATCAAGTAAACATAG
70895781 ATGA
1 ATGA
70895785 GCCCAGCACA
Statistics
Matches: 30, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
17 1 0.03
18 10 0.33
19 2 0.07
20 2 0.07
21 14 0.47
22 1 0.03
ACGTcount: A:0.48, C:0.12, G:0.14, T:0.25
Consensus pattern (21 bp):
ATGAATATCAAGTAAACATAG
Found at i:70896418 original size:40 final size:38
Alignment explanation
Indices: 70896350--70896433 Score: 105
Period size: 40 Copynumber: 2.2 Consensus size: 38
70896340 AGTCTTGGGC
* * *
70896350 TTAGTATCAGTAGCGTTGGGCCTTAGCCCAACTCAGTA
1 TTAGTATCAGTAGCCTAGGGCCTTAGCCCAACACAGTA
*
70896388 TTAGTATCAGTATGCACTAGGGCCTTAGCCCATCACAGTA
1 TTAGTATCAGTA-GC-CTAGGGCCTTAGCCCAACACAGTA
*
70896428 TCAGTA
1 TTAGTA
70896434 ACAAATATAC
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
38 12 0.31
39 2 0.05
40 25 0.64
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (38 bp):
TTAGTATCAGTAGCCTAGGGCCTTAGCCCAACACAGTA
Found at i:70896995 original size:18 final size:18
Alignment explanation
Indices: 70896957--70896991 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
70896947 ATCCCACACA
*
70896957 CCCGTGTGGACCCACATG
1 CCCGTGTAGACCCACATG
70896975 CCCGTGTAG-CCCACATG
1 CCCGTGTAGACCCACATG
70896992 GCCCAAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.40, G:0.26, T:0.17
Consensus pattern (18 bp):
CCCGTGTAGACCCACATG
Found at i:70899375 original size:49 final size:49
Alignment explanation
Indices: 70899319--70899563 Score: 256
Period size: 49 Copynumber: 4.9 Consensus size: 49
70899309 TAGCCAAAGC
* * *
70899319 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * *
70899368 TATCTGGTACACGTAGTAGCCTGCATTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * * *
70899418 CATCTGATACACGTAGGAGCCTTCACTTAGTACTACACACGTGATCAAAGT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * * * *
70899469 TATCGGGTACGCATAGTAGCTTGCACTTAGTACTACGCATGCGACCAAT
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * * *
70899518 AATCCGATACACGTAGTAGCTTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
70899564 TCACAATAGA
Statistics
Matches: 160, Mismatches: 33, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
49 80 0.50
50 46 0.29
51 34 0.21
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:70899556 original size:100 final size:99
Alignment explanation
Indices: 70899332--70899562 Score: 277
Period size: 100 Copynumber: 2.3 Consensus size: 99
70899322 CTGGTACGCA
* * * * * * *
70899332 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTAGCCTGCATTTA
1 TAGTAGCTTGCACTTAGTACTACACACGTGACAAATTATCGGGTACACATAGTAGCCTGCACTTA
* * *
70899397 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACAATCCGATACACG
* * *
70899431 TAGGAGCCTT-CACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCATAGTAGCTTGCAC
1 TAGTAG-CTTGCACTTAGTACTACACACGTGA-CAAA-TTATCGGGTACACATAGTAGCCTGCAC
* * *
70899495 TTAGTACTACGCATGCGACC-AATAATCCGATACACG
63 TTAGTACTACACACGCGACCTAACAATCCGATACACG
70899531 TAGTAGCTTGCACTTAGTACTACACACGTGAC
1 TAGTAGCTTGCACTTAGTACTACACACGTGAC
70899563 CTCACAATAG
Statistics
Matches: 111, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
99 28 0.25
100 44 0.40
101 39 0.35
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
TAGTAGCTTGCACTTAGTACTACACACGTGACAAATTATCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACAATCCGATACACG
Found at i:70907504 original size:292 final size:292
Alignment explanation
Indices: 70906973--70907559 Score: 1111
Period size: 292 Copynumber: 2.0 Consensus size: 292
70906963 ACGAGCTTAC
70906973 AAATGTTATAACTCAATCAAATTAAACTCAATCAAGTTATTTCCATGCTTAATCATGTTTGGCTA
1 AAATGTTATAACTCAATCAAATTAAACTCAATCAAGTTATTTCCATGCTTAATCATGTTTGGCTA
*
70907038 ACTCTACTATAAATCCATAAATTTCAATTCAGCATATTAAACCAATTTACATTTAAAATTAATGA
66 ACTCTACTATAAATCCATAAATTTCAATTCAGCATATTAAACCAATTTACATTCAAAATTAATGA
70907103 TGTTTAATTGCTTAAAGACTTACCTCGGATGTTATAAAACGGAACAGGGCAGCTAGTCGACAACT
131 TGTTTAATTGCTTAAAGACTTACCTCGGATGTTATAAAACGGAACAGGGCAGCTAGTCGACAACT
*
70907168 TTCATCTTTCCCTGATCCAAATTCGATTTCTTTGGTTTTTGATCTAAACATATCAAAATTAAGCT
196 TTCATCTTTCCCTGATCCAAATTCGATTTCTTTGGTTCTTGATCTAAACATATCAAAATTAAGCT
*
70907233 CATTCAAACATATTTTCATTCCATTTAGTCCA
261 CATTCAAACATATTTTCATTCAATTTAGTCCA
70907265 AAATGTTATAACTCAATCAAATTAAACTCAATCAAGTTATTTCCATGCTTAATCATGTTTGGCTA
1 AAATGTTATAACTCAATCAAATTAAACTCAATCAAGTTATTTCCATGCTTAATCATGTTTGGCTA
70907330 ACTCTACTATAAATCCATAAATTTCAATTCAGCATATTAAACCAATTTACATTCAAAATTAATGA
66 ACTCTACTATAAATCCATAAATTTCAATTCAGCATATTAAACCAATTTACATTCAAAATTAATGA
*
70907395 TGTTTAATTGCTTAAAGACTTACCTCGGATGTTATAAAACGGAACAGGGCAGCTAGTTGACAACT
131 TGTTTAATTGCTTAAAGACTTACCTCGGATGTTATAAAACGGAACAGGGCAGCTAGTCGACAACT
* * *
70907460 TTCGTCTTTCCCTGATCCAAATTTGATTTCTTTGGTTCTTGATCTAAACATATCCAAATTAAGCT
196 TTCATCTTTCCCTGATCCAAATTCGATTTCTTTGGTTCTTGATCTAAACATATCAAAATTAAGCT
70907525 CATTCAAACATATTTTCATTCAATTTAGTCCA
261 CATTCAAACATATTTTCATTCAATTTAGTCCA
70907557 AAA
1 AAA
70907560 ACACATAAAT
Statistics
Matches: 288, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
292 288 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (292 bp):
AAATGTTATAACTCAATCAAATTAAACTCAATCAAGTTATTTCCATGCTTAATCATGTTTGGCTA
ACTCTACTATAAATCCATAAATTTCAATTCAGCATATTAAACCAATTTACATTCAAAATTAATGA
TGTTTAATTGCTTAAAGACTTACCTCGGATGTTATAAAACGGAACAGGGCAGCTAGTCGACAACT
TTCATCTTTCCCTGATCCAAATTCGATTTCTTTGGTTCTTGATCTAAACATATCAAAATTAAGCT
CATTCAAACATATTTTCATTCAATTTAGTCCA
Found at i:70910919 original size:6 final size:6
Alignment explanation
Indices: 70910908--70911100 Score: 170
Period size: 6 Copynumber: 31.8 Consensus size: 6
70910898 AACCAAAATG
70910908 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAAT- A-AATGTTC
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAA---TC
* *
70910957 -GTAA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
70911005 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
70911053 AGAATC AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
70911101 GTGAATGCAA
Statistics
Matches: 155, Mismatches: 12, Indels: 40
0.75 0.06 0.19
Matches are distributed among these distances:
4 2 0.01
5 12 0.08
6 127 0.82
7 10 0.06
8 2 0.01
9 2 0.01
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:70911008 original size:85 final size:90
Alignment explanation
Indices: 70910908--70911100 Score: 299
Period size: 91 Copynumber: 2.2 Consensus size: 90
70910898 AACCAAAATG
*
70910908 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAAT-A-AAT-GT-TC-GTAA-CAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATAGTAACAG-AATCAGAAT
*
70910967 CAGAATCAGAATCAGAATTAGGTGAC
65 CAGAATCAGAATCAGAATTACGTGAC
*
70910993 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAG-AATAGTAACAGAATCAGAAT
70911058 CAGAATCAGAATCAGAATTACGTGAC
65 CAGAATCAGAATCAGAATTACGTGAC
70911084 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
70911101 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 3, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
85 41 0.42
86 1 0.01
88 2 0.02
89 2 0.02
90 3 0.03
91 49 0.50
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (90 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAGAATAGTAACAGAATCAGAATC
AGAATCAGAATCAGAATTACGTGAC
Found at i:70911504 original size:22 final size:22
Alignment explanation
Indices: 70911456--70911514 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
70911446 GTAAATACGT
*
70911456 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
70911478 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
70911500 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
70911515 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:70911667 original size:27 final size:26
Alignment explanation
Indices: 70911602--70911684 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
70911592 TCGATCGGTC
* * *
70911602 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
*
70911628 ATACAGGTATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
70911655 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
70911682 AAC
1 AAC
70911685 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 7 0.14
27 42 0.86
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:70912088 original size:27 final size:27
Alignment explanation
Indices: 70911882--70912094 Score: 248
Period size: 27 Copynumber: 7.9 Consensus size: 27
70911872 AGGGGCAAAA
* * *
70911882 CGGTAATT-TCACCCCACAAGGGTATCT
1 CGGTAATTCT-ACCCTACAGGGGTATTT
70911909 CGGTAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
* *
70911936 CGGTATTTCTACCCTACAAGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
* *
70911963 CGATAATTCTACCCTATAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
* * * *
70911990 TGGTAATTCTATCCTATAAGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
** *
70912017 CAATAATTCTACCCTATAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
*
70912044 CGGAAATTCTACCCTACAGGGGTATTT
1 CGGTAATTCTACCCTACAGGGGTATTT
* **
70912071 CAGTAATTCTACATTACAGGGGTA
1 CGGTAATTCTACCCTACAGGGGTA
70912095 AAATGATAAT
Statistics
Matches: 159, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 158 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
CGGTAATTCTACCCTACAGGGGTATTT
Found at i:70912120 original size:27 final size:27
Alignment explanation
Indices: 70912090--70912438 Score: 429
Period size: 27 Copynumber: 13.0 Consensus size: 27
70912080 TACATTACAG
* * *
70912090 GGGTAAAATGATAATTTTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
** *
70912117 GGGTAAAACAATAATTTTGTAAA-CTGA
1 GGGTAAAACGGTAATTCTGTAAATC-GA
* *
70912144 GGGT-AAACTAGTAATTCTGTAAATCAA
1 GGGTAAAAC-GGTAATTCTGTAAATCGA
* ** *
70912171 GGGTAAAACGGTAATTTTACAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
70912198 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
70912225 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
70912252 GGGTAAAACAGTAATTCTGTAAA-CTGA
1 GGGTAAAACGGTAATTCTGTAAATC-GA
* *
70912279 GGGTAAAACGGTAATTCTATAAATTGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
70912306 GGGTAAAAC-GTAATTCTGTAAA-CTGA
1 GGGTAAAACGGTAATTCTGTAAATC-GA
70912332 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
* * ** *
70912359 GGGTAAAACGATAATTTTAAAAATCAA
1 GGGTAAAACGGTAATTCTGTAAATCGA
*
70912386 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAACGGTAATTCTGTAAATCGA
70912413 GGGTAAAACGGTAATTCTGTAAATCG
1 GGGTAAAACGGTAATTCTGTAAATCG
70912439 GGAGTACTTT
Statistics
Matches: 282, Mismatches: 31, Indels: 18
0.85 0.09 0.05
Matches are distributed among these distances:
26 29 0.10
27 247 0.88
28 6 0.02
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
GGGTAAAACGGTAATTCTGTAAATCGA
Found at i:70913748 original size:46 final size:45
Alignment explanation
Indices: 70913681--70913798 Score: 157
Period size: 46 Copynumber: 2.6 Consensus size: 45
70913671 TATGTGTGCT
* * *
70913681 AGTGTAAGACATGTTTGGGACATGCATTAGCCA-CAGCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CATCAG-ACGAGAGCC
* *
70913727 AGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCA-TCAGACGAGAGCC
70913773 AGTGTAAGACATGTCTGGGACATGCA
1 AGTGTAAGACATGTCTGGGACATGCA
70913799 CCGTCTGGGA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
45 2 0.03
46 61 0.94
47 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCATCAGACGAGAGCC
Found at i:70913806 original size:16 final size:16
Alignment explanation
Indices: 70913785--70913817 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
70913775 TGTAAGACAT
70913785 GTCTGGGACATGCACC
1 GTCTGGGACATGCACC
70913801 GTCTGGGACATGCACC
1 GTCTGGGACATGCACC
70913817 G
1 G
70913818 GCCTCGCGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.18
Consensus pattern (16 bp):
GTCTGGGACATGCACC
Found at i:70916612 original size:46 final size:47
Alignment explanation
Indices: 70916560--70916787 Score: 338
Period size: 46 Copynumber: 5.1 Consensus size: 47
70916550 CTTACATCCA
70916560 GCCTTATCACATATA-ACACTTTCACATTCATCACATCGGCCATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
*
70916606 GCCTTATCACATATATA-ACCTTCACATTCATCACATCGGCC-TTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
*
70916651 GCCTTAT-AC-----T--ACTTTCACATTCATCACATCGGCTATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
70916690 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
*
70916737 GCCTTATCACAT-TATACACTTTCACATTCATCACATCAG-CATTAG
1 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
70916782 GCCTTA
1 GCCTTA
70916788 CATCATTCAT
Statistics
Matches: 167, Mismatches: 5, Indels: 21
0.87 0.03 0.11
Matches are distributed among these distances:
38 22 0.13
39 12 0.07
40 2 0.01
44 2 0.01
45 24 0.14
46 64 0.38
47 41 0.25
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
Found at i:70916648 original size:38 final size:38
Alignment explanation
Indices: 70916605--70916731 Score: 114
Period size: 38 Copynumber: 3.1 Consensus size: 38
70916595 TCGGCCATTA
*
70916605 GGCCTTATCACATATATAACCTTCACATTCATCACATC
1 GGCCTTATCACATATATAACTTTCACATTCATCACATC
* *
70916643 GGCCTTAGGC-CTTATACT-ACTTTCACATTCATCACATCGGC
1 GGCCTTA-TCACATATA-TAACTTTCACATTCATCACAT---C
70916684 TATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
1 -----GGCCTTATCACATATATA-ACTTTCACATTCATCACATC
70916728 GGCC
1 GGCC
70916732 ATTAGGCCTT
Statistics
Matches: 71, Mismatches: 5, Indels: 25
0.70 0.05 0.25
Matches are distributed among these distances:
38 30 0.42
39 6 0.08
41 1 0.01
44 1 0.01
45 2 0.03
46 12 0.17
47 19 0.27
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (38 bp):
GGCCTTATCACATATATAACTTTCACATTCATCACATC
Found at i:70916668 original size:84 final size:89
Alignment explanation
Indices: 70916577--70916787 Score: 317
Period size: 84 Copynumber: 2.4 Consensus size: 89
70916567 CACATATAAC
70916577 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-ACCTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACA
70916641 TCGGCC-TTAGGCCTTAT-AC-T-
66 TCGGCCATTAGGCCTTATCACATA
* *
70916661 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACA
70916726 TCGGCCATTAGGCCTTATCACATTATA
66 TCGGCCATTAGGCCTTATCAC---ATA
*
70916753 CACTTTCACATTCATCACATCAG-CATTAGGCCTTA
1 -ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
70916788 CATCATTCAT
Statistics
Matches: 114, Mismatches: 4, Indels: 10
0.89 0.03 0.08
Matches are distributed among these distances:
84 45 0.39
85 23 0.20
86 11 0.10
87 2 0.02
91 1 0.01
92 11 0.10
93 21 0.18
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (89 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATA
Found at i:70916712 original size:47 final size:45
Alignment explanation
Indices: 70916654--70916787 Score: 223
Period size: 47 Copynumber: 2.9 Consensus size: 45
70916644 GCCTTAGGCC
70916654 TTATACTACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACA
1 TTATAC-ACTTTCACATTCATCACATCGGC-ATTAGGCCTTATCACA
70916701 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 T-TATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACA
*
70916748 TTATACACTTTCACATTCATCACATCAGCATTAGGCCTTA
1 TTATACACTTTCACATTCATCACATCGGCATTAGGCCTTA
70916788 CATCATTCAT
Statistics
Matches: 84, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
45 12 0.14
46 26 0.31
47 40 0.48
48 6 0.07
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.34
Consensus pattern (45 bp):
TTATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACA
Found at i:70920232 original size:40 final size:40
Alignment explanation
Indices: 70920175--70920357 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
70920165 CCAGCATGAT
* *
70920175 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
70920215 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
70920255 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
70920296 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
70920336 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
70920358 CATCATTCGA
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 96 0.81
41 20 0.17
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:70920704 original size:29 final size:29
Alignment explanation
Indices: 70920665--70920743 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
70920655 CTTAATAATC
*
70920665 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
70920695 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
70920724 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70920744 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:70922877 original size:47 final size:47
Alignment explanation
Indices: 70922799--70923122 Score: 459
Period size: 47 Copynumber: 7.1 Consensus size: 47
70922789 CCCTTCAGGA
* * * * * * *
70922799 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
70922846 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70922893 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70922940 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGG-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70922986 -----C-C-T-TATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70923025 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70923072 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70923119 CTTA
1 CTTA
70923123 CTATCATTTC
Statistics
Matches: 252, Mismatches: 16, Indels: 18
0.88 0.06 0.06
Matches are distributed among these distances:
38 35 0.14
39 1 0.00
40 1 0.00
41 1 0.00
44 1 0.00
45 1 0.00
46 1 0.00
47 211 0.84
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70923018 original size:85 final size:85
Alignment explanation
Indices: 70922904--70923076 Score: 337
Period size: 85 Copynumber: 2.0 Consensus size: 85
70922894 TTATCACATA
70922904 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCA
*
70922969 TCACATCGGCTATTAGGCCT
66 TCACATCGGCCATTAGGCCT
70922989 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCA
70923054 TCACATCGGCCATTAGGCCT
66 TCACATCGGCCATTAGGCCT
70923074 TAT
1 TAT
70923077 CACATATATA
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 87 1.00
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.34
Consensus pattern (85 bp):
TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCT
Found at i:70923028 original size:132 final size:132
Alignment explanation
Indices: 70922857--70923122 Score: 496
Period size: 132 Copynumber: 2.0 Consensus size: 132
70922847 CCGTCACATA
70922857 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
* * *
70922922 TCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
70922987 CT
131 CT
*
70922989 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
70923054 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
66 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
70923119 CT
131 CT
70923121 TA
1 TA
70923123 CTATCATTTC
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 130 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (132 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
CT
Found at i:70923163 original size:132 final size:130
Alignment explanation
Indices: 70922857--70923164 Score: 379
Period size: 132 Copynumber: 2.3 Consensus size: 130
70922847 CCGTCACATA
*** **
70922857 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACAT-AAACATTA-GCAATATCACATATATACACTTTCACATTCA
* * *
70922922 TCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
64 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
70922987 CT
129 CT
*** **
70922989 TATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATTCATCACATAAAC-ATTA-GCAATATCACATATATACACTTTCACATTCA
70923054 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
64 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
70923119 CT
129 CT
* *
70923121 TACTATCA-TTTCATATTCGAATACTCATAAAC-TTA-CAATATCAC
1 TA-TA-CACTTTCACATTC--AT-CACATAAACATTAGCAATATCAC
70923165 GATTTAGAAT
Statistics
Matches: 158, Mismatches: 12, Indels: 12
0.87 0.07 0.07
Matches are distributed among these distances:
131 2 0.01
132 133 0.84
133 11 0.07
134 5 0.03
135 2 0.01
136 5 0.03
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (130 bp):
TATACACTTTCACATTCATCACATAAACATTAGCAATATCACATATATACACTTTCACATTCATC
ACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGCCT
Found at i:70936415 original size:27 final size:27
Alignment explanation
Indices: 70936384--70936470 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
70936374 CATAATCGTC
* * *
70936384 ATTTTACCATACAGGGATATTATGGTT
1 ATTTTACCCTATAGGGGTATTATGGTT
* * *
70936411 ATTTTACCCTATAGGGGCATTACGGTC
1 ATTTTACCCTATAGGGGTATTATGGTT
*
70936438 ATTTTACCCTGTAGGGGTATTATGGTT
1 ATTTTACCCTATAGGGGTATTATGGTT
70936465 ATTTTA
1 ATTTTA
70936471 ACTATTTTGG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (27 bp):
ATTTTACCCTATAGGGGTATTATGGTT
Found at i:70941575 original size:46 final size:46
Alignment explanation
Indices: 70941522--70941696 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
70941512 TATTTGGGCA
*
70941522 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
70941568 TCCGAACTCGTTGAGTT-AGTCCGAGTT---TGA-GAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A--CG
* * * *
70941614 TTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
70941660 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70941697 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
41 1 0.01
42 8 0.08
44 1 0.01
45 10 0.09
46 67 0.63
47 10 0.09
48 1 0.01
50 7 0.07
51 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:70941654 original size:92 final size:93
Alignment explanation
Indices: 70941518--70941687 Score: 279
Period size: 92 Copynumber: 1.8 Consensus size: 93
70941508 GGGATATTTG
* *
70941518 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCGAACTCGTTGAG
70941583 TT-AGTCCGAGTTTGAGAGATGTAACTA
66 TTGAGTCCGAGTTTGAGAGATGTAACTA
* * * *
70941610 GGCATTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGTCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCGAACTCGTTGAG
70941675 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
70941688 CGCTTATGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 61 0.86
93 10 0.14
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTTGAGAGATGTAACTA
Found at i:70947395 original size:21 final size:21
Alignment explanation
Indices: 70947371--70947432 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
70947361 ACTCCGTTAT
*
70947371 GCACAGAAGTGCATCAGTTAC
1 GCACAGAAGTGCATCAATTAC
*
70947392 GCACTA-AAGTGCATTAATT-C
1 GCAC-AGAAGTGCATCAATTAC
* *
70947412 GCACCGAAGAGCATCAATTAC
1 GCACAGAAGTGCATCAATTAC
70947433 ATCCTATTAG
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
20 16 0.48
21 16 0.48
22 1 0.03
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.21
Consensus pattern (21 bp):
GCACAGAAGTGCATCAATTAC
Found at i:70985583 original size:46 final size:46
Alignment explanation
Indices: 70985530--70985655 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
70985520 TGGTTGAGCA
* *
70985530 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
70985576 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
70985622 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70985656 GGGGCGGGTT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:70992440 original size:39 final size:40
Alignment explanation
Indices: 70992356--70992571 Score: 219
Period size: 39 Copynumber: 5.5 Consensus size: 40
70992346 CGGATGATAA
* * * * *
70992356 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTATA-T
* *
70992396 TCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAC
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTATTATAT
* *
70992435 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTATAT
* *
70992475 CCGGGCT-AGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTATAT
* * *
70992514 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-TTATAT
* *
70992554 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
70992572 TACTTGGCTT
Statistics
Matches: 150, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
39 79 0.53
40 71 0.47
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTATAT
Found at i:70992489 original size:79 final size:79
Alignment explanation
Indices: 70992356--70992545 Score: 226
Period size: 79 Copynumber: 2.4 Consensus size: 79
70992346 CGGATGATAA
* * * * *
70992356 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTAATTTCGGGCTAAGCCCGAAGGCAATT-G
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGC-ATTGG
*
70992420 TGCGAGTTATTATAC
65 TGCGAGTTACTATAC
* *
70992435 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTA-TTATGTCCGGGCT-AGTCCCGAAGGCATTG
1 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGCATTG
*
70992498 GTGCGAGTTACTATAT
64 GTGCGAGTTACTATAC
*
70992514 CCGGGCT-ATGTCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAT-TCCCGAAGGCATTCGTGCGAGT
70992546 AGCTATATCC
Statistics
Matches: 97, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 10 0.10
79 87 0.90
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (79 bp):
CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCATTGGT
GCGAGTTACTATAC
Found at i:70992552 original size:40 final size:40
Alignment explanation
Indices: 70992356--70992557 Score: 209
Period size: 40 Copynumber: 5.1 Consensus size: 40
70992346 CGGATGATAA
* * * * *
70992356 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* * * *
70992396 TCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAC
1 CCGGGCTATGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
* *
70992435 CCGGGCTAAT-TCCCGAAGGCATTCGTGCGAGTTATTATGT
1 CCGGGCT-ATGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
70992475 CCGGGCTA-GTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATAT
*
70992514 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
70992554 CCGG
1 CCGG
70992558 TTAAATCCCG
Statistics
Matches: 139, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
39 65 0.47
40 74 0.53
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTATGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:70992567 original size:79 final size:79
Alignment explanation
Indices: 70992356--70992571 Score: 217
Period size: 79 Copynumber: 2.7 Consensus size: 79
70992346 CGGATGATAA
* * * * * * * *
70992356 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATTTCGGGCTAAGCCCGAAGGCAATTG
1 CCGGGCTAATTCCCGAAGGCATTCGAGCGAGTTACTATA-TCCGGGCTAATCCCGAAGGCAATTG
*
70992420 TGCGAGTTATTATAC
65 TGCGAGTTACTATAC
* * * *
70992435 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGTCCGGGCTAGTCCCGAAGGC-ATTGG
1 CCGGGCTAATTCCCGAAGGCATTCGAGCGAGTTACTATATCCGGGCTAATCCCGAAGGCAATT-G
*
70992499 TGCGAGTTACTATAT
65 TGCGAGTTACTATAC
*
70992514 CCGGGCT-ATGTCCCGAAGGCATTCGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAT-TCCCGAAGGCATTCGAGCGAGTTA-CTATATCCGGGCT-AATCCCGAAGG
70992572 TACTTGGCTT
Statistics
Matches: 115, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
78 10 0.09
79 105 0.91
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAATTCCCGAAGGCATTCGAGCGAGTTACTATATCCGGGCTAATCCCGAAGGCAATTGT
GCGAGTTACTATAC
Found at i:70996397 original size:46 final size:46
Alignment explanation
Indices: 70996347--70996519 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 46
70996337 TGGTTGAGCA
70996347 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
70996393 TCCGAACTCGTTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* *
70996438 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
70996486 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70996520 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 8, Indels: 24
0.77 0.06 0.17
Matches are distributed among these distances:
42 6 0.06
43 5 0.05
45 3 0.03
46 56 0.52
47 25 0.23
48 2 0.02
50 4 0.04
51 6 0.06
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70996503 original size:93 final size:93
Alignment explanation
Indices: 70996344--70996513 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
70996334 GGATGGTTGA
*
70996344 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
70996409 TGAGTCCGAGTTTGTGAGATGTAACTAG
66 TGAGTCCGAGTTTGTGAGATGTAACTAG
* *
70996437 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
70996501 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
70996514 CACTTAGGGG
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTTGTGAGATGTAACTAG
Found at i:70999008 original size:36 final size:36
Alignment explanation
Indices: 70998955--70999051 Score: 103
Period size: 34 Copynumber: 2.8 Consensus size: 36
70998945 CTTTCAGTTT
* * * * **
70998955 CAGTTTGGGCCTGAGCCCCTTTTTTAGTAACAGTCG
1 CAGTCTGGGCCTAAGCCCCTTTTTCAGTAACAATAA
*
70998991 CAGTCTGGGCCTAAG-CCC-ATTTCAGTAACAATAA
1 CAGTCTGGGCCTAAGCCCCTTTTTCAGTAACAATAA
70999025 CAGTCTGGGCCTAA-CCCC-TTTTCAGTA
1 CAGTCTGGGCCTAAGCCCCTTTTTCAGTA
70999052 CAGTATGCAA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
34 36 0.69
35 3 0.06
36 13 0.25
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (36 bp):
CAGTCTGGGCCTAAGCCCCTTTTTCAGTAACAATAA
Found at i:71005722 original size:93 final size:93
Alignment explanation
Indices: 71005611--71005780 Score: 268
Period size: 93 Copynumber: 1.8 Consensus size: 93
71005601 GCCCCTAAGT
* ** * *
71005611 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTTAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
71005676 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
71005704 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
71005769 CGAGTTCGGATG
66 CGAGTTCGGATG
71005781 ATCAACCATC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:71005764 original size:46 final size:45
Alignment explanation
Indices: 71005604--71005776 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 45
71005594 GTAACCCGCC
* * ** *
71005604 CCTAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
* * * *
71005649 CCATAAATGAACTCGGACTTAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTC-GA--AC-A-TTCGCAT
* *
71005699 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
71005742 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCG
71005777 GATGATCAAC
Statistics
Matches: 103, Mismatches: 15, Indels: 19
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 56 0.54
47 26 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
Done.