Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 218 of 325
Found at i:71013353 original size:46 final size:46
Alignment explanation
Indices: 71013187--71013359 Score: 158
Period size: 46 Copynumber: 3.7 Consensus size: 46
71013177 GTAACCCGCC
* * * *
71013187 CCTAAGTGAAATCAGACTCAACTCAACGAGCTC-AGGCGTTCGCAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGAGACATTCGCAT
* * * *
71013232 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTC-GA-GAC-A-TTCGCAT
* *
71013282 -CTCA-CGAACTCAGACTCAACTCAACGAGTTCGA-ACATTCGCAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGAGACATTCGCAT
*
71013325 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTCG
71013360 GATGCTCAAC
Statistics
Matches: 103, Mismatches: 15, Indels: 19
0.75 0.11 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 55 0.53
47 25 0.24
48 3 0.03
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGAGACATTCGCAT
Found at i:71013380 original size:46 final size:46
Alignment explanation
Indices: 71013187--71013380 Score: 132
Period size: 46 Copynumber: 4.2 Consensus size: 46
71013177 GTAACCCGCC
* * * * * *
71013187 CCTAAGTGAAATCAGACTCAACTCAACGAGCTCAGG-CGTTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTC-GGATGCTCAACAT
*
71013232 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACAT
* * * * *** *
71013282 -CTCA-CGAACTCAGACTCAACTCAACGAGTTCGAACATTC-GCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
71013325 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CAT
71013373 CCT-AGTGA
1 CCTAAGTGA
71013381 GATGTCACTT
Statistics
Matches: 113, Mismatches: 23, Indels: 25
0.70 0.14 0.16
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 7 0.06
46 62 0.55
47 28 0.25
48 8 0.07
49 1 0.01
50 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAT
Found at i:71032426 original size:13 final size:13
Alignment explanation
Indices: 71032408--71032432 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71032398 GTGTTTGGGC
71032408 CCACACGGGCATT
1 CCACACGGGCATT
71032421 CCACACGGGCAT
1 CCACACGGGCAT
71032433 GTGTGTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.40, G:0.24, T:0.12
Consensus pattern (13 bp):
CCACACGGGCATT
Found at i:71036035 original size:19 final size:19
Alignment explanation
Indices: 71035998--71036033 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
71035988 ATATGTGATG
*
71035998 TTAATAAATAATTTAAAAT
1 TTAAAAAATAATTTAAAAT
71036017 TTAAAAAAT-ATTTAAAA
1 TTAAAAAATAATTTAAAA
71036034 ATAAGAGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAAAAAATAATTTAAAAT
Found at i:71037387 original size:154 final size:154
Alignment explanation
Indices: 71037102--71037401 Score: 492
Period size: 154 Copynumber: 1.9 Consensus size: 154
71037092 GGAGACTAAA
* * ** *
71037102 GTATATTGCTTAAGGGAGTAAAAGTGGGAATAAGATCCCTTTTGTATTGTATGTTGGGTATATAT
1 GTATATTGCTAAAGGGAGTAAAAGTGGGAAGAAGATCAATTTTGTATTGTATGTTGGGTATACAT
* * *
71037167 AGGGAGAAAGTCTCCTTGCTTGTAATGTCACGTCATCAACAACACGAGTGGTGGCCTGCTCGTGT
66 AGGGAGAAAGTCTCCTTGCTTGTAATGTCACGTCATCAACAACACGAGCGATGGCCTGCTCATGT
**
71037232 GGTTAGTCAAGTGGCAAGTCTAGG
131 GGCCAGTCAAGTGGCAAGTCTAGG
71037256 GTATATTGCTAAAGGGAGTAAAAGTGGGAAGAAGATCAATTTTGTATTGTATGTTGGGTATACAT
1 GTATATTGCTAAAGGGAGTAAAAGTGGGAAGAAGATCAATTTTGTATTGTATGTTGGGTATACAT
* *
71037321 AGGGAGAAGGTCTCCTTGCTTGTAATGTCACGTCATCAACAGCACGAGCGATGGCCTGCTCATGT
66 AGGGAGAAAGTCTCCTTGCTTGTAATGTCACGTCATCAACAACACGAGCGATGGCCTGCTCATGT
71037386 GGCCAGTCAAGTGGCA
131 GGCCAGTCAAGTGGCA
71037402 GGCCTGTTAT
Statistics
Matches: 134, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
154 134 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (154 bp):
GTATATTGCTAAAGGGAGTAAAAGTGGGAAGAAGATCAATTTTGTATTGTATGTTGGGTATACAT
AGGGAGAAAGTCTCCTTGCTTGTAATGTCACGTCATCAACAACACGAGCGATGGCCTGCTCATGT
GGCCAGTCAAGTGGCAAGTCTAGG
Found at i:71039124 original size:22 final size:24
Alignment explanation
Indices: 71039096--71039144 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
71039086 GAGTCATTTA
*
71039096 AAAAGTAAAG-ATTCAAT-CAAAC
1 AAAAGTAAAGAATTAAATCCAAAC
*
71039118 AAAAGTAATGAATTAAATCCAAAC
1 AAAAGTAAAGAATTAAATCCAAAC
71039142 AAA
1 AAA
71039145 TTGATAAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 9 0.39
23 6 0.26
24 8 0.35
ACGTcount: A:0.61, C:0.12, G:0.08, T:0.18
Consensus pattern (24 bp):
AAAAGTAAAGAATTAAATCCAAAC
Found at i:71043255 original size:40 final size:40
Alignment explanation
Indices: 71043200--71043281 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
71043190 CAATGCTTGC
71043200 TTTGTGGGATGAATTATTAAAGGTTGCATCGCAGCTGAGT
1 TTTGTGGGATGAATTATTAAAGGTTGCATCGCAGCTGAGT
71043240 TTTGTGGGATGAATTATTAAAGGTTGCATCGCAGCTGAGT
1 TTTGTGGGATGAATTATTAAAGGTTGCATCGCAGCTGAGT
71043280 TT
1 TT
71043282 CAGTGATCTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.24, C:0.10, G:0.29, T:0.37
Consensus pattern (40 bp):
TTTGTGGGATGAATTATTAAAGGTTGCATCGCAGCTGAGT
Found at i:71045998 original size:20 final size:20
Alignment explanation
Indices: 71045973--71046016 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
71045963 ATCCATTTGC
71045973 AAACAATAGCTCATCCATAT
1 AAACAATAGCTCATCCATAT
**
71045993 AAACAATATTTCATCCATAT
1 AAACAATAGCTCATCCATAT
71046013 AAAC
1 AAAC
71046017 TGTAATAGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.23, G:0.02, T:0.27
Consensus pattern (20 bp):
AAACAATAGCTCATCCATAT
Found at i:71046769 original size:40 final size:40
Alignment explanation
Indices: 71046682--71046792 Score: 118
Period size: 40 Copynumber: 2.8 Consensus size: 40
71046672 CGACTATGTT
* *
71046682 TGGCACTAAGTGTGCG-ATTCAAAATAGCTTTGGCTATAAA
1 TGGCACTAAGTGTGCGAATT-GAAATAGTTTTGGCTATAAA
** *
71046722 TAACACTAAGTGTGCGAATTGAAATAGTTTTGGCTATACGA
1 TGGCACTAAGTGTGCGAATTGAAATAGTTTTGGCTATA-AA
* *
71046763 -GGCACTAAGTGTGTGATATTGAGATAGTTT
1 TGGCACTAAGTGTGCGA-ATTGAAATAGTTT
71046793 CGATTATTTG
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
40 43 0.73
41 16 0.27
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (40 bp):
TGGCACTAAGTGTGCGAATTGAAATAGTTTTGGCTATAAA
Found at i:71048601 original size:32 final size:32
Alignment explanation
Indices: 71048561--71048629 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
71048551 TTAATCGCAA
71048561 TATCAGTGTGGCCGTAGCCCATAT-AGTATCAG
1 TATCAGTGTGGCCGTAGCCCATATCAGTA-CAG
* * *
71048593 TATCAGTGTGGGCTTAGCCCATCTCAGTACAG
1 TATCAGTGTGGCCGTAGCCCATATCAGTACAG
71048625 TATCA
1 TATCA
71048630 TAAATGCATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 29 0.88
33 4 0.12
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (32 bp):
TATCAGTGTGGCCGTAGCCCATATCAGTACAG
Found at i:71050579 original size:40 final size:40
Alignment explanation
Indices: 71050501--71050724 Score: 274
Period size: 40 Copynumber: 5.5 Consensus size: 40
71050491 ACCCAAGTAT
* * *
71050501 CTTCGAGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
71050540 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
71050580 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
71050620 CTTCGGAACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * * *
71050663 CTTCGAGACTTAGCCCAGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
71050703 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
71050725 CATCCGAATA
Statistics
Matches: 159, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
39 11 0.07
40 114 0.72
41 1 0.01
43 33 0.21
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:71050697 original size:83 final size:80
Alignment explanation
Indices: 71050501--71050724 Score: 290
Period size: 83 Copynumber: 2.8 Consensus size: 80
71050491 ACCCAAGTAT
* * * *
71050501 CTTCGAGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
71050565 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* * * *
71050580 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGAACTTAGCCCGGGTATAG-
1 CTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
71050644 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* *
71050663 CTTCGAGACTTAGCCCAGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
71050725 CATCCGAATA
Statistics
Matches: 124, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
79 12 0.10
80 48 0.39
83 64 0.52
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CTTCGAGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:71055717 original size:30 final size:30
Alignment explanation
Indices: 71055673--71055741 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
71055663 CAAAGATAAC
*
71055673 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
* * *
71055702 GAGAAACCCAGAATAAAGAGATCCAGGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
71055732 AAGAAACCCA
1 AAGAAACCCA
71055742 AGATACGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 7 0.21
30 27 0.79
ACGTcount: A:0.57, C:0.17, G:0.17, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:71055746 original size:15 final size:15
Alignment explanation
Indices: 71055684--71055746 Score: 65
Period size: 15 Copynumber: 4.2 Consensus size: 15
71055674 AGAAAACCGA
*
71055684 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
*
71055699 ATAGAGAAACCC-AG
1 ATAAAGAAACCCAAG
* * *
71055713 AATAAAGAGATCCAGG
1 -ATAAAGAAACCCAAG
71055729 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
71055744 ATA
1 ATA
71055747 CGATACTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
14 2 0.05
15 34 0.92
16 1 0.03
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.11
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:71058718 original size:46 final size:44
Alignment explanation
Indices: 71058651--71058824 Score: 197
Period size: 46 Copynumber: 3.8 Consensus size: 44
71058641 TGTAACCCGC
71058651 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TT-GCAT
* *
71058697 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-CTTGCAT
* *** * *
71058743 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTGCAT
*
71058789 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
71058825 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
44 1 0.01
45 30 0.28
46 46 0.43
47 28 0.26
48 2 0.02
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTGCAT
Found at i:71058817 original size:92 final size:93
Alignment explanation
Indices: 71058659--71058828 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
71058649 GCCCATAAGT
* *
71058659 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
71058724 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
71058752 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
71058816 CGAGTTCGGATGC
66 CGAGCTCGGATGC
71058829 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 43 0.59
93 30 0.41
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:71096495 original size:24 final size:23
Alignment explanation
Indices: 71096438--71096498 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 23
71096428 AACCAGCAAA
*
71096438 CTCTTATGAGCTGAAACGATAAG
1 CTCTTATGAGCTGAAAAGATAAG
* * *
71096461 CT-TCAACGAGCTGAAAATAGTAAG
1 CTCT-TATGAGCTGAAAAGA-TAAG
71096485 CTCTTATGAGCTGA
1 CTCTTATGAGCTGA
71096499 TATATCGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
22 1 0.03
23 13 0.45
24 14 0.48
25 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (23 bp):
CTCTTATGAGCTGAAAAGATAAG
Found at i:71105640 original size:9 final size:9
Alignment explanation
Indices: 71105626--71105656 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
71105616 GGAGCAACCA
71105626 ATGAAGAAG
1 ATGAAGAAG
71105635 ATGAAGAAG
1 ATGAAGAAG
71105644 A-GAAGAAG
1 ATGAAGAAG
71105652 ATGAA
1 ATGAA
71105657 ACAGATTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.58, C:0.00, G:0.32, T:0.10
Consensus pattern (9 bp):
ATGAAGAAG
Found at i:71108255 original size:40 final size:40
Alignment explanation
Indices: 71108176--71108456 Score: 404
Period size: 40 Copynumber: 7.0 Consensus size: 40
71108166 CGGGATTCAA
* *
71108176 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71108215 CCGGATATAGTAACTCGCACCATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* ** *
71108255 CCGGATATAGTAACTCACACAAATGCCTTCGAAACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71108295 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
71108335 CCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
71108375 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
71108415 CCGGATGTAATAACTCGCACAAATGCCTTTGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
71108455 CC
1 CC
71108457 AGTTATCATC
Statistics
Matches: 220, Mismatches: 20, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
38 1 0.00
39 17 0.08
40 202 0.92
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:71117329 original size:40 final size:40
Alignment explanation
Indices: 71117259--71117436 Score: 209
Period size: 40 Copynumber: 4.5 Consensus size: 40
71117249 AAGCCAAGTA
* * * *
71117259 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
71117298 CCTTCGGGACATAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
71117338 CCTTTGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
71117378 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
71117418 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
71117437 TTATCATCCA
Statistics
Matches: 120, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 13 0.11
40 107 0.89
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:71117416 original size:80 final size:80
Alignment explanation
Indices: 71117273--71117436 Score: 233
Period size: 80 Copynumber: 2.0 Consensus size: 80
71117263 CGGGATTTAA
* * *
71117273 CCGGATATAGCTACTCGCTCGAATGCCTTCGGGACATAGCCCAGATATAGTAACTCGCACAAATG
1 CCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCAGATATAGTAACTAGCACAAATG
71117338 CCTTTGGGACTTAGC
66 CCTTTGGGACTTAGC
* * * *
71117353 CCGGATATAG-TAGCTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAA
1 CCGGATATAGCTA-CTCGCACAAATGCCTTCGGGACATAGCCCAGATA-TAGTAACTAGCACAAA
71117416 TGCCTTTGGGACTTAGC
64 TGCCTTTGGGACTTAGC
71117433 CCGG
1 CCGG
71117437 TTATCATCCA
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
79 3 0.04
80 72 0.96
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (80 bp):
CCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCAGATATAGTAACTAGCACAAATG
CCTTTGGGACTTAGC
Found at i:71119853 original size:16 final size:16
Alignment explanation
Indices: 71119829--71119864 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
71119819 AGAAATAAAA
71119829 AAAATAACAAAAA-TT
1 AAAATAACAAAAATTT
71119844 AAAATCAACAAAAATTT
1 AAAAT-AACAAAAATTT
71119861 AAAA
1 AAAA
71119865 GAGAAGTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
16 8 0.42
17 6 0.32
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAATAACAAAAATTT
Found at i:71121990 original size:68 final size:68
Alignment explanation
Indices: 71121863--71122057 Score: 284
Period size: 68 Copynumber: 2.8 Consensus size: 68
71121853 CGATTTATCT
* * * *
71121863 CGTAGCTCTCTTGTCTACATGGTG-TCCTTCACTTGGAATCACTCATGTGACCTAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGG-GATACATC-C-T-GTATCACACATGTGACCTAGCTACATTTA
71121927 TCTCTCA
62 TCTCTCA
71121934 CGTAGCTCTCTTGTCTACATGGGATACATCCTGTATCACACATGTGACCTAGCTACATTTATCTC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCTGTATCACACATGTGACCTAGCTACATTTATCTC
71121999 TCA
66 TCA
* * *
71122002 CGTACCTCTCTTGTCTACACGGGATACATCCCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGGATACATCCTGTATCACACATGTGACCTAGCTAC
71122058 TATATAGTAT
Statistics
Matches: 116, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
68 87 0.75
69 1 0.01
70 2 0.02
71 26 0.22
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (68 bp):
CGTAGCTCTCTTGTCTACATGGGATACATCCTGTATCACACATGTGACCTAGCTACATTTATCTC
TCA
Found at i:71122082 original size:68 final size:68
Alignment explanation
Indices: 71121900--71122083 Score: 259
Period size: 68 Copynumber: 2.7 Consensus size: 68
71121890 TTCACTTGGA
* *
71121900 ATCACTCATGTGACCTAGCTACATTTATCTCTCACGTAG-CTCTCTTGTCTACATGGGATACATC
1 ATCACACATGTGACCTAGCTACATTTATCTCT-ACGTAGCCTCTCTTGTCTACACGGGATACATC
*
71121964 CTGT
65 CCGT
71121968 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTA-CCTCTCTTGTCTACACGGGATACATC
1 ATCACACATGTGACCTAGCTACATTTATCTCT-ACGTAGCCTCTCTTGTCTACACGGGATACATC
71122032 CCGT
65 CCGT
* *
71122036 ATCACACATGTGACCTAGCTACTATATAGTATCT-CGTAGCCT-TCTTGT
1 ATCACACATGTGACCTAGCTAC-ATTTA-TCTCTACGTAGCCTCTCTTGT
71122084 ACACATGATG
Statistics
Matches: 107, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
68 96 0.90
69 7 0.07
70 4 0.04
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTACGTAGCCTCTCTTGTCTACACGGGATACATCC
CGT
Found at i:71127401 original size:21 final size:21
Alignment explanation
Indices: 71127377--71127450 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
71127367 CTAGGAAATA
71127377 TGTGATCTGAACTCATTGAGT
1 TGTGATCTGAACTCATTGAGT
* ** *
71127398 TGTGGTCTGAGTTCA-TGATCT
1 TGTGATCTGAACTCATTGA-GT
*
71127419 ATGTAATCTGAACTCATTGAGT
1 -TGTGATCTGAACTCATTGAGT
*
71127441 TGTGGTCTGA
1 TGTGATCTGA
71127451 GTTCATGATA
Statistics
Matches: 39, Mismatches: 11, Indels: 6
0.70 0.20 0.11
Matches are distributed among these distances:
20 3 0.08
21 21 0.54
22 12 0.31
23 3 0.08
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.39
Consensus pattern (21 bp):
TGTGATCTGAACTCATTGAGT
Found at i:71127436 original size:43 final size:43
Alignment explanation
Indices: 71127374--71127510 Score: 193
Period size: 43 Copynumber: 3.1 Consensus size: 43
71127364 TCACTAGGAA
*
71127374 ATATGTGATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGAT
1 ATATGTAATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGAT
*
71127417 CTATGTAATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGAT
1 ATATGTAATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGAT
* * * **
71127460 ATATGTGACATCCGAACTCATTGAGTAGTGGTTTGAGTTTGTGAT
1 ATATGT-A-ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGAT
71127505 ATATGT
1 ATATGT
71127511 GACTCATGTT
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
43 46 0.55
44 1 0.01
45 37 0.44
ACGTcount: A:0.24, C:0.12, G:0.25, T:0.39
Consensus pattern (43 bp):
ATATGTAATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGAT
Found at i:71127497 original size:45 final size:45
Alignment explanation
Indices: 71127385--71127513 Score: 190
Period size: 45 Copynumber: 2.9 Consensus size: 45
71127375 TATGTGATCT
* *
71127385 GAACTCATTGAGTTGTGGTCTGAGTTCATGATCTATGT-A-ATCT
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
71127428 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
* * **
71127473 GAACTCATTGAGTAGTGGTTTGAGTTTGTGATATATGTGAC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
71127514 TCATGTTTTG
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
43 37 0.47
44 1 0.01
45 40 0.51
ACGTcount: A:0.24, C:0.12, G:0.26, T:0.38
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
Found at i:71137410 original size:15 final size:15
Alignment explanation
Indices: 71137390--71137418 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
71137380 GAATTGTTGC
71137390 TTGATAACACGGTGA
1 TTGATAACACGGTGA
71137405 TTGATAACACGGTG
1 TTGATAACACGGTG
71137419 TGTGAAGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (15 bp):
TTGATAACACGGTGA
Found at i:71149966 original size:19 final size:19
Alignment explanation
Indices: 71149933--71149978 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
71149923 AGTTTTAAGT
* *
71149933 ATATATATGTGAATAATTTG
1 ATAT-TATGTAAATAATGTG
71149953 ATATTATGTAAATAATGTG
1 ATATTATGTAAATAATGTG
*
71149972 ACATTAT
1 ATATTAT
71149979 AATATGTTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.41, C:0.02, G:0.13, T:0.43
Consensus pattern (19 bp):
ATATTATGTAAATAATGTG
Found at i:71153847 original size:25 final size:25
Alignment explanation
Indices: 71153813--71153862 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
71153803 ATAAAATTCC
71153813 TTAACTAAATATTCACACAATCATA
1 TTAACTAAATATTCACACAATCATA
*
71153838 TTAACTAAATTTTCACACAATCATA
1 TTAACTAAATATTCACACAATCATA
71153863 CTATCATGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (25 bp):
TTAACTAAATATTCACACAATCATA
Found at i:71158939 original size:25 final size:25
Alignment explanation
Indices: 71158911--71158959 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
71158901 AAGAAATCGT
71158911 ATTAAATAATAAGGTTAA-ATATGTA
1 ATTAAATAATAA-GTTAATATATGTA
*
71158936 ATTAAATTATAAGTTAATATATGT
1 ATTAAATAATAAGTTAATATATGT
71158960 TATAATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (25 bp):
ATTAAATAATAAGTTAATATATGTA
Found at i:71164132 original size:39 final size:39
Alignment explanation
Indices: 71164010--71164262 Score: 226
Period size: 40 Copynumber: 6.6 Consensus size: 39
71164000 GCTCCTCGTT
* *
71164010 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* *
71164050 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
* * *
71164090 CAAATGCCTTCGGGCTTAGCCGGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
71164129 CAAATGCCTTC-GG---A--TC----TTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
71164158 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * *
71164197 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
71164238 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
71164263 CATCATTCAA
Statistics
Matches: 176, Mismatches: 21, Indels: 31
0.77 0.09 0.14
Matches are distributed among these distances:
29 22 0.12
30 2 0.01
33 1 0.01
35 2 0.01
38 2 0.01
39 58 0.33
40 79 0.45
41 10 0.06
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:71164186 original size:68 final size:68
Alignment explanation
Indices: 71164072--71164217 Score: 267
Period size: 68 Copynumber: 2.2 Consensus size: 68
71164062 GGACTTAACC
* *
71164072 CGGAT-TTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCGGGAATTAGTATCTCGTACAAATGC
1 CGGATCTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGC
71164136 CTT
66 CTT
71164139 CGGATCTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGC
1 CGGATCTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGC
71164204 CTT
66 CTT
71164207 CGGATCTTAGT
1 CGGATCTTAGT
71164218 CCGGATATGG
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
67 5 0.07
68 71 0.93
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (68 bp):
CGGATCTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGC
CTT
Found at i:71171422 original size:79 final size:80
Alignment explanation
Indices: 71171320--71171583 Score: 385
Period size: 79 Copynumber: 3.3 Consensus size: 80
71171310 GCTCCTCGTT
* * * **
71171320 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
71171383 GGATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
71171400 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
71171464 ATTTAGTAACTCGCA
66 ATTTAGTAACTCGCA
71171479 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
* * * *
71171543 ATATGGTCACTTAGCA
66 ATTTAGTAAC-TCGCA
71171559 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71171584 CATCATTCAA
Statistics
Matches: 171, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
78 3 0.02
79 134 0.78
80 34 0.20
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
ATTTAGTAACTCGCA
Found at i:71171583 original size:40 final size:40
Alignment explanation
Indices: 71171320--71171583 Score: 326
Period size: 40 Copynumber: 6.7 Consensus size: 40
71171310 GCTCCTCGTT
* *
71171320 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
71171360 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
71171400 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* *
71171439 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTCGCA
*
71171479 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
71171518 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
71171559 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71171584 CATCATTCAA
Statistics
Matches: 194, Mismatches: 19, Indels: 22
0.83 0.08 0.09
Matches are distributed among these distances:
38 4 0.02
39 64 0.33
40 112 0.58
41 14 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:71173454 original size:56 final size:56
Alignment explanation
Indices: 71173354--71173464 Score: 143
Period size: 56 Copynumber: 2.0 Consensus size: 56
71173344 AAGACCACGG
* * * *
71173354 CTTCGATATATGTGTGCAAGTAAGACCATGTTTTATACGTTGGCATCGATATGTGA
1 CTTCAATATATGTGTGCAAGTAAGACCATGTCTGAGACGTTGGCATCGATATGTGA
* * *
71173410 CTTCAATATATGTGTGCGAGTAAGACCCTGTCTGGGACAG-TGGCATCGATATGTG
1 CTTCAATATATGTGTGCAAGTAAGACCATGTCTGAGAC-GTTGGCATCGATATGTG
71173465 GTTACATGTA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
56 46 0.98
57 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (56 bp):
CTTCAATATATGTGTGCAAGTAAGACCATGTCTGAGACGTTGGCATCGATATGTGA
Found at i:71175083 original size:21 final size:22
Alignment explanation
Indices: 71175041--71175085 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
71175031 AAAATAAATT
* *
71175041 TGTTTTGATATATGTTGGATTA
1 TGTTTTAATATATGTTAGATTA
*
71175063 TGTTTTAAT-TATGTTATATTA
1 TGTTTTAATATATGTTAGATTA
71175084 TG
1 TG
71175086 AATAATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.24, C:0.00, G:0.18, T:0.58
Consensus pattern (22 bp):
TGTTTTAATATATGTTAGATTA
Found at i:71176165 original size:34 final size:32
Alignment explanation
Indices: 71176114--71176216 Score: 100
Period size: 34 Copynumber: 3.1 Consensus size: 32
71176104 CAGTGTTGAA
* *
71176114 CAGTCTGGGCTTAAGCCCATATCAGTCGCAGTAT
1 CAGTGTGGGCTT-AGCCCATATCAGT-ACAGTAT
71176148 CAGTGTGGGCCTTAGCCCA-ATACAGTAACAGTAT
1 CAGTGTGGG-CTTAGCCCATAT-CAGT-ACAGTAT
* * * *
71176182 AAGTGTAGGCGTAGCCCATTTCAGTACAGTAT
1 CAGTGTGGGCTTAGCCCATATCAGTACAGTAT
71176214 CAG
1 CAG
71176217 AAATGCATAC
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
32 9 0.16
33 14 0.24
34 32 0.55
35 3 0.05
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.25
Consensus pattern (32 bp):
CAGTGTGGGCTTAGCCCATATCAGTACAGTAT
Found at i:71182895 original size:25 final size:25
Alignment explanation
Indices: 71182867--71182915 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
71182857 AAGAAATCAT
*
71182867 ATTATATAATAAGGTTAA-ATATGTA
1 ATTAAATAATAA-GTTAATATATGTA
71182892 ATTAAATAATAAGTTAATATATGT
1 ATTAAATAATAAGTTAATATATGT
71182916 TATAATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (25 bp):
ATTAAATAATAAGTTAATATATGTA
Found at i:71183927 original size:56 final size:56
Alignment explanation
Indices: 71183827--71183938 Score: 138
Period size: 56 Copynumber: 2.0 Consensus size: 56
71183817 AAGACCATGG
* * *
71183827 CTTCGATATATGTGTGCAAGTAAGACCACGTTTTATACGTTGGCATCAATATGTGA
1 CTTCGATATATGTGTGCAAGTAAGACCACGTCTGAGACGTTGGCATCAATATGTGA
* * *
71183883 CTTCGATATATGTGTGCGAGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATGTGA
1 CTTCGATATATGTGTGCAAGTAAGACCAC-GTCTGAGAC-GTTGGCATCAATATGTGA
71183939 TTACATGTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
55 1 0.02
56 46 0.96
57 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (56 bp):
CTTCGATATATGTGTGCAAGTAAGACCACGTCTGAGACGTTGGCATCAATATGTGA
Found at i:71190979 original size:30 final size:30
Alignment explanation
Indices: 71190943--71191039 Score: 158
Period size: 30 Copynumber: 3.2 Consensus size: 30
71190933 GTGCCTCAAC
*
71190943 CGTGTGTGACACACAGTCTTGTTACCTGGT
1 CGTGTGTGACACACAGTCTTGTTACATGGT
71190973 CGTGTGTGACACACAGTCTTGTTACATGGT
1 CGTGTGTGACACACAGTCTTGTTACATGGT
* * *
71191003 CGTGTGTGACACACAGTCTTATTACACGGC
1 CGTGTGTGACACACAGTCTTGTTACATGGT
71191033 CGTGTGT
1 CGTGTGT
71191040 CCTGTAACAC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.32
Consensus pattern (30 bp):
CGTGTGTGACACACAGTCTTGTTACATGGT
Found at i:71193537 original size:49 final size:49
Alignment explanation
Indices: 71193483--71193707 Score: 288
Period size: 49 Copynumber: 4.5 Consensus size: 49
71193473 CTGGTACGCA
* * * *
71193483 TAGTAGCCTGCACATAATACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
*
71193532 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCTGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* ** * *
71193581 TAGTAGCCTGCACTTAGTACTACATACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
71193631 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
71193682 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
71193708 TGCGACCTCA
Statistics
Matches: 153, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
49 76 0.50
50 41 0.27
51 35 0.23
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:71195296 original size:43 final size:43
Alignment explanation
Indices: 71195235--71195346 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 43
71195225 TATTACACTA
* * * *
71195235 TCCCAGACAGGGTCTTACACGTAATC-GACTAACGATCCCAATG
1 TCCCAGACATGGTCTTACATGTAATCTGAAT-ACAATCCCAATG
* * *
71195278 TCCCATACATGGTCTTACATGTAATCTTAATACAATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCTGAATACAATCCCAATG
*
71195321 TCCCAGACATAGTCTTACATGTAATC
1 TCCCAGACATGGTCTTACATGTAATC
71195347 ACATCTCTGT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 57 0.97
44 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCTGAATACAATCCCAATG
Found at i:71198749 original size:42 final size:42
Alignment explanation
Indices: 71198702--71198849 Score: 199
Period size: 42 Copynumber: 3.5 Consensus size: 42
71198692 AGATTACGTA
*
71198702 TAAGACCATATCTAGGATATGGCATCAATATGAGACTTCGTG
1 TAAGACCATATCTGGGATATGGCATCAATATGAGACTTCGTG
71198744 TAAGACCATATCTGGGATATGGCATCAATATGAGACTTCGTG
1 TAAGACCATATCTGGGATATGGCATCAATATGAGACTTCGTG
* * * * * *
71198786 TAAGACCATAGCTGGGCTATTGGTATCGATACGAGA-TTACATG
1 TAAGACCATATCTGGGATA-TGGCATCAATATGAGACTT-CGTG
*
71198829 TAAGACCATATTTGGGATATG
1 TAAGACCATATCTGGGATATG
71198850 ACATTGGAAT
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
42 62 0.66
43 32 0.34
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCAATATGAGACTTCGTG
Found at i:71202494 original size:46 final size:44
Alignment explanation
Indices: 71202438--71202613 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 44
71202428 TATTTAGGCA
71202438 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAAT
* ** * *
71202483 GTCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATAT-AACTAGGCA-
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC---ACTTATGGA-T-GGAAT
*
71202531 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAAT
*
71202576 TCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 T-CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71202614 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.01
44 7 0.06
45 2 0.02
46 64 0.58
47 27 0.25
48 1 0.01
49 7 0.06
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAT
Found at i:71202591 original size:93 final size:93
Alignment explanation
Indices: 71202432--71202605 Score: 296
Period size: 93 Copynumber: 1.9 Consensus size: 93
71202422 CTAGGATATT
*
71202432 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTG
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTG
71202497 AGTTGAGTCCGAGTTCGAGAGATATAAC
66 AGTTGAGTCCGAGTTCGAGAGATATAAC
* * *
71202525 TAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAT-TCCCGAGCTCGTT
1 TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT-CCGAACTCGTT
71202589 GAGTTGAGTCCGAGTTC
65 GAGTTGAGTCCGAGTTC
71202606 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 1 0.01
93 75 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
TAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTG
AGTTGAGTCCGAGTTCGAGAGATATAAC
Found at i:71203361 original size:14 final size:14
Alignment explanation
Indices: 71203342--71203373 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
71203332 AATATGGAAT
71203342 TGAGTTATATTTTA
1 TGAGTTATATTTTA
71203356 TGAGTTATATTTTA
1 TGAGTTATATTTTA
71203370 TGAG
1 TGAG
71203374 ATGTTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.19, T:0.53
Consensus pattern (14 bp):
TGAGTTATATTTTA
Found at i:71206611 original size:85 final size:85
Alignment explanation
Indices: 71206461--71206620 Score: 180
Period size: 85 Copynumber: 1.9 Consensus size: 85
71206451 GTCTGAGACA
* * * * **
71206461 TCGTGTAAGACCATGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTTTGGGA
1 TCGTGTAAGACCATGTCTAGGACACAGGCATCGATTGAGATTTACATATAAGACCATATCCGGGA
71206526 CATCGACATTGTATCTGATT
66 CATCGACATTGTATCTGATT
* * * *
71206546 TCGTGTAAGACCCTGTCTAGGACAGAGGCATTGATATTGA-A-TTACATGTAAGACCATATCCGG
1 TCGTGTAAGACCATGTCTAGGACACAGGCATCG--ATTGAGATTTACATATAAGACCATATCCGG
* *
71206609 GACGTCGGCATT
64 GACATCGACATT
71206621 ATACATGTTT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
85 55 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (85 bp):
TCGTGTAAGACCATGTCTAGGACACAGGCATCGATTGAGATTTACATATAAGACCATATCCGGGA
CATCGACATTGTATCTGATT
Found at i:71215493 original size:27 final size:27
Alignment explanation
Indices: 71215456--71215630 Score: 244
Period size: 27 Copynumber: 6.5 Consensus size: 27
71215446 ACACTAGAAC
71215456 CCCTTATGTGATAAAATGACTATTTTG
1 CCCTTATGTGATAAAATGACTATTTTG
* * *
71215483 CTCTTATGTGATAAAATGATTATTTTT
1 CCCTTATGTGATAAAATGACTATTTTG
*
71215510 CCCTTATGTGATAAAATGACTAATTTG
1 CCCTTATGTGATAAAATGACTATTTTG
*
71215537 CCCTTATGTGATAAAATGACTGTTTTG
1 CCCTTATGTGATAAAATGACTATTTTG
* * *
71215564 CCCTCATGTGGTAAAATGATTATTTTG
1 CCCTTATGTGATAAAATGACTATTTTG
* *
71215591 CCCTTATGTGGTAAAATGACTGTTTTG
1 CCCTTATGTGATAAAATGACTATTTTG
71215618 -CCTCTATGTGATA
1 CCCT-TATGTGATA
71215631 TATTTTTCTA
Statistics
Matches: 130, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
26 3 0.02
27 127 0.98
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACTATTTTG
Found at i:71219259 original size:27 final size:27
Alignment explanation
Indices: 71219221--71219449 Score: 293
Period size: 27 Copynumber: 8.5 Consensus size: 27
71219211 ACACTGGACC
* *
71219221 CCCTTATATGATAAAATGACTATTTTT
1 CCCTTATGTGATAAAATGACTATTTTG
*
71219248 CCCTTATGTGATAAAATGACTATTTTA
1 CCCTTATGTGATAAAATGACTATTTTG
*
71219275 CCCTTATCTGATAAAATGACTATTTTG
1 CCCTTATGTGATAAAATGACTATTTTG
*
71219302 CCCTTTTGTGATAAAATGACTATTTTG
1 CCCTTATGTGATAAAATGACTATTTTG
71219329 CCCTTATGTGATAAAATGACTAATTTT-
1 CCCTTATGTGATAAAATGACT-ATTTTG
* *
71219356 CCCTTATTTGATAAAATAACTATTTTG
1 CCCTTATGTGATAAAATGACTATTTTG
* * * * *
71219383 CCCTCATGTGGTAAAATGATTGTGTTG
1 CCCTTATGTGATAAAATGACTATTTTG
*
71219410 CCCTTATGT-AGTAGAATGACTATTTTG
1 CCCTTATGTGA-TAAAATGACTATTTTG
71219437 TCCC-TATGTGATA
1 -CCCTTATGTGATA
71219450 TATGTTTATA
Statistics
Matches: 175, Mismatches: 22, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
26 5 0.03
27 161 0.92
28 9 0.05
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGACTATTTTG
Found at i:71221780 original size:20 final size:20
Alignment explanation
Indices: 71221755--71221810 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
71221745 TCAACTTTTA
71221755 AATCAAGTTAAAATGATT-TC
1 AATCAAGTTAAAAT-ATTGTC
* *
71221775 AATCAAGTTAGAATTTTGTC
1 AATCAAGTTAAAATATTGTC
*
71221795 AATC-AGTTAAATTATT
1 AATCAAGTTAAAATATT
71221811 TTTAAAACAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 11 0.37
20 19 0.63
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (20 bp):
AATCAAGTTAAAATATTGTC
Found at i:71250129 original size:20 final size:20
Alignment explanation
Indices: 71250104--71250143 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
71250094 ACTTGCCTAC
*
71250104 GGGGTTTGATATATTTACAA
1 GGGGTTCGATATATTTACAA
71250124 GGGGTTCGATATATTTACAA
1 GGGGTTCGATATATTTACAA
71250144 TTTCAGTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (20 bp):
GGGGTTCGATATATTTACAA
Found at i:71259881 original size:40 final size:41
Alignment explanation
Indices: 71259816--71259926 Score: 122
Period size: 40 Copynumber: 2.8 Consensus size: 41
71259806 GATTAAGTTC
*
71259816 GGCACTAAGTGTGCG-GTTCGAAATAGCTTTAGCTACA-AA
1 GGCACTAAGTGTGCGAGTTCGAAATAGCTTCAGCTACATAA
* * * *
71259855 TGGCATTAAGTGTGCGAGTT-GGAATAGCTTCGGCTACATGA
1 -GGCACTAAGTGTGCGAGTTCGAAATAGCTTCAGCTACATAA
*
71259896 GGCACTAAGTGTGCGA-TATCGAGATAGCTTC
1 GGCACTAAGTGTGCGAGT-TCGAAATAGCTTC
71259927 GGTTTATTGA
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
39 1 0.02
40 45 0.76
41 13 0.22
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (41 bp):
GGCACTAAGTGTGCGAGTTCGAAATAGCTTCAGCTACATAA
Found at i:71264042 original size:46 final size:48
Alignment explanation
Indices: 71263970--71264074 Score: 133
Period size: 46 Copynumber: 2.2 Consensus size: 48
71263960 GACAGGACAG
* * * *
71263970 GACAGAAATGAGCCATGTAAGTCCATATCAG-T-TATATGGCTTTGGA
1 GACAGGAATGAGCCATATAAGCCCATATCAGATATATATGGCATTGGA
*
71264016 GACAGGAATGAGCCATATAAGCCCATATTAGATATATATATGGCATTGGA
1 GACAGGAATGAGCCATATAAGCCCATATCAG--ATATATATGGCATTGGA
71264066 GACAGGAAT
1 GACAGGAAT
71264075 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
46 27 0.54
49 1 0.02
50 22 0.44
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATATAAGCCCATATCAGATATATATGGCATTGGA
Found at i:71268372 original size:45 final size:46
Alignment explanation
Indices: 71268308--71268428 Score: 136
Period size: 50 Copynumber: 2.6 Consensus size: 46
71268298 GGACAGACAG
* *
71268308 GACAGAAATGAGCCATGTAAGTCCATATCAG-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCAGATATATGGCATTGGA
* *
71268353 GACAGGAATGAGCCATGTAAGCCCATATTAGATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGTCCATATCAG----ATATATGGCATTGGA
* **
71268403 GACAGGAATAATTCATGTAAGTCCAT
1 GACAGGAATGAGCCATGTAAGTCCAT
71268429 GTCGAAGCAT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
45 28 0.44
50 35 0.56
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGTCCATATCAGATATATGGCATTGGA
Found at i:71272618 original size:46 final size:46
Alignment explanation
Indices: 71272474--71272778 Score: 246
Period size: 46 Copynumber: 6.6 Consensus size: 46
71272464 GGGGTAAAAT
* *
71272474 GTTGATGCCATGTCCCAGACATAGTCTTACACTGGTTTATATCTC-AA
1 GTTGATG-CATGTCCCAGACAT-GTCTTACATTGGTTTACATCTCGAA
** * ** *
71272521 GACGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA
1 GTTGATG-CATGTCCCAGACAT-GTCTTACATTGGTTTACATCTCGAA
* * * *
71272567 CTTGATGCATGTCTCAGACGTGTCTTACATTGGTTTACTTCTCGAA
1 GTTGATGCATGTCCCAGACATGTCTTACATTGGTTTACATCTCGAA
* * *
71272613 GTTGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTC-AA
1 GTTGATGCATGTCCCAGACATGTCTTACA-TTGGTTTACATCTCGAA
** * ** *
71272658 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA
1 -GTTGATG-CATGTCCCAGACAT-GTCTTACATTGGTTTACATCTCGAA
* * *
71272705 GTTGATGCATGTCTCAGACGTGTCTTACATTGGTTTACTTCTCGAA
1 GTTGATGCATGTCCCAGACATGTCTTACATTGGTTTACATCTCGAA
** *
71272751 GCCGATGCATGTCCCAGACATGACTTAC
1 GTTGATGCATGTCCCAGACATGTCTTAC
71272779 TCTAGCTCTC
Statistics
Matches: 201, Mismatches: 46, Indels: 23
0.74 0.17 0.09
Matches are distributed among these distances:
44 18 0.09
45 34 0.17
46 92 0.46
47 49 0.24
48 8 0.04
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (46 bp):
GTTGATGCATGTCCCAGACATGTCTTACATTGGTTTACATCTCGAA
Found at i:71272668 original size:138 final size:138
Alignment explanation
Indices: 71272474--71272830 Score: 583
Period size: 138 Copynumber: 2.6 Consensus size: 138
71272464 GGGGTAAAAT
* * * *
71272474 GTTGATGCCATGTCCCAGACATAGTCTTACACT-GGTTTATATCTCAA-GACGATGCCATGTCCC
1 GTTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTCAATGCCGATGCCATGTCCC
71272537 AGACATGGTCTTACACTGACACATCTCGTACTTGATGCATGTCTCAGACGTGTCTTACATTGGTT
63 AGACATGGTCTTACACTGACACATCTCGTACTTGATGCATGTCTCAGACGTGTCTTACATTGGTT
71272602 TACTTCTCGAA
128 TACTTCTCGAA
71272613 GTTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGA
1 GTTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGA
*
71272678 CATGGTCTTACACTGACACATCTCGTAGTTGATGCATGTCTCAGACGTGTCTTACATTGGTTTAC
66 CATGGTCTTACACTGACACATCTCGTACTTGATGCATGTCTCAGACGTGTCTTACATTGGTTTAC
71272743 TTCTCGAA
131 TTCTCGAA
** * * *
71272751 GCCGATGCATGTCCCAGACATGACTTACTCTAGCTCTCATCTCAATGCCGATGCCATGTCCCATA
1 GTTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGA
71272816 CATGGTCTTACACTG
66 CATGGTCTTACACTG
71272831 GCTCATAATA
Statistics
Matches: 206, Mismatches: 10, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
137 17 0.08
138 182 0.88
139 7 0.03
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.31
Consensus pattern (138 bp):
GTTGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAGA
CATGGTCTTACACTGACACATCTCGTACTTGATGCATGTCTCAGACGTGTCTTACATTGGTTTAC
TTCTCGAA
Found at i:71272702 original size:92 final size:91
Alignment explanation
Indices: 71272477--71272772 Score: 271
Period size: 92 Copynumber: 3.2 Consensus size: 91
71272467 GTAAAATGTT
* * **
71272477 GATGCCATGTCCCAGACATAGTCTTACACTGGTTTATATCTC-AAGACGATGCCATGTCCCAGAC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGTTTACATCTCGAAGTTGATG-CATGTCCCAGAC
* * * * *
71272541 ATGGTCTTACACTGACACATCTC-GTACTT
64 AT-GTCTTACACTGTCTCATCTCAATGC-C
* * * *
71272570 GATGCATGTCTCAGACGT-GTCTTACATTGGTTTACTTCTCGAAGTTGATGCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGGTCTTACACTGGTTTACATCTCGAAGTTGATGCATGTCCCAGACAT
71272634 GTCTTACACTAGCTCTCATCTCAATGCC
66 GTCTTACACT-G-TCTCATCTCAATGCC
** * * *
71272662 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTAGTTGATGCATGTCTCAGACG
1 GATG-CATGTCCCAGACATGGTCTTACACTGGTTTACATCTCGAAGTTGATGCATGTCCCAGACA
* * *
71272725 TGTCTTACATTGGTTTACTTCTCGAA-GCC
65 TGTCTTACACT-GTCT-CATCTC-AATGCC
71272754 GATGCATGTCCCAGACATG
1 GATGCATGTCCCAGACATG
71272773 ACTTACTCTA
Statistics
Matches: 170, Mismatches: 25, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
90 10 0.06
91 51 0.30
92 79 0.46
93 21 0.12
94 9 0.05
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGTTTACATCTCGAAGTTGATGCATGTCCCAGACAT
GTCTTACACTGTCTCATCTCAATGCC
Found at i:71272801 original size:46 final size:45
Alignment explanation
Indices: 71272477--71272830 Score: 227
Period size: 46 Copynumber: 7.6 Consensus size: 45
71272467 GTAAAATGTT
* * * *
71272477 GATGCCATGTCCCAGACATAGTCTTACACTGGTTTATATCTCAA-GAC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGCTCT-CATCTCAATGCC
* * * * *
71272524 GATGCCATGTCCCAGACATGGTCTTACACTG-ACACATCTC-GTACTT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGCTCTCATCTCAATGC-C
* * * * * * **
71272570 GATGCATGTCTCAGACGTGTCTTACATTGGTTTACTTCTCGAA-GTT
1 GATGCATGTCCCAGACATGTCTTACACTGCTCT-CATCTC-AATGCC
71272616 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACT-GCTCTCATCTCAATGCC
* * * **
71272662 GATGCCATGTCCCAGACATGGTCTTACACTG-ACACATCTC-GTAGTT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGCTCTCATCTCAAT-GCC
* * * * * *
71272708 GATGCATGTCTCAGACGTGTCTTACATTGGTTTACTTCTCGAA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGCTCT-CATCTC-AATGCC
* *
71272754 GATGCATGTCCCAGACATGACTTACTCTAGCTCTCATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACT-GCTCTCATCTCAATGCC
*
71272800 GATGCCATGTCCCATACATGGTCTTACACTG
1 GATG-CATGTCCCAGACAT-GTCTTACACTG
71272831 GCTCATAATA
Statistics
Matches: 235, Mismatches: 53, Indels: 38
0.72 0.16 0.12
Matches are distributed among these distances:
44 20 0.09
45 34 0.14
46 98 0.42
47 65 0.28
48 18 0.08
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGCTCTCATCTCAATGCC
Found at i:71275243 original size:27 final size:27
Alignment explanation
Indices: 71275213--71275390 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
71275203 ATATTGAGTC
* *
71275213 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
71275240 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
71275267 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
71275295 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
71275322 CGCACACTTAGTGCATCACAT--TCATTT
1 CGCACACTTAGTGC-T-ACATAATCAACT
* * *
71275349 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
71275376 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71275391 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.03
27 98 0.77
28 23 0.18
29 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:71282726 original size:27 final size:27
Alignment explanation
Indices: 71282696--71282873 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
71282686 ATATTGAGTC
* *
71282696 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
71282723 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
71282750 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
71282778 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
71282805 CGCACACTTAGTGCATCACAT--TCATTT
1 CGCACACTTAGTGC-T-ACATAATCAACT
* * *
71282832 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
71282859 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71282874 GTACAATTTA
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
25 4 0.03
27 98 0.77
28 23 0.18
29 3 0.02
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:71290990 original size:12 final size:12
Alignment explanation
Indices: 71290952--71290996 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 12
71290942 AGCCTCACGA
71290952 ATTCTCGTTCAT
1 ATTCTCGTTCAT
71290964 ATTCTGTCACGTTCAT
1 ATTC--T--CGTTCAT
71290980 ATTCTCGTTCAT
1 ATTCTCGTTCAT
71290992 ATTCT
1 ATTCT
71290997 ACCACAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
12 16 0.55
14 2 0.07
16 11 0.38
ACGTcount: A:0.18, C:0.24, G:0.09, T:0.49
Consensus pattern (12 bp):
ATTCTCGTTCAT
Found at i:71292226 original size:48 final size:48
Alignment explanation
Indices: 71292149--71292326 Score: 184
Period size: 48 Copynumber: 3.7 Consensus size: 48
71292139 AGGGTTAGGA
* * *
71292149 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCCTTGATATGT
1 GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGCCCTTGATATAT
* * * *
71292197 GAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAG-CATTCATATAA
1 GAGCCAGTGTAAGACCATGTCTGGAACATGGCATC-GCCCTTGATATAT
**
71292245 GAGCTTGTGTAAGACCATGTCTGGGAA-ATGGCATCGACACC--GATATAT
1 GAGCCAGTGTAAGACCATGTCT-GGAACATGGCATCG-C-CCTTGATATAT
*
71292293 AAGAGCCAGTGTAAGACCATGTCTGGGACATGGC
1 --GAGCCAGTGTAAGACCATGTCTGGAACATGGC
71292327 GTCGGCATCT
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
47 1 0.01
48 71 0.67
49 8 0.08
50 26 0.25
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGCCCTTGATATAT
Found at i:71301945 original size:50 final size:50
Alignment explanation
Indices: 71301781--71301958 Score: 217
Period size: 48 Copynumber: 3.6 Consensus size: 50
71301771 TAGGGTTATG
* * *
71301781 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-CCCTCGATATGT-
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACAC-CGATATATA
* *
71301830 -GAGCCAGTGTAAGACCATGTTTGGAACATGGCATC-A-A-C-ATTCATATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGA-T-ATATA
*
71301877 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATATATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATATATA
*
71301927 AGAGCCAGTGTAAGACCATGTCTAGGACATGG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGG
71301959 TGTCGGCATC
Statistics
Matches: 110, Mismatches: 10, Indels: 17
0.80 0.07 0.12
Matches are distributed among these distances:
44 1 0.01
45 2 0.02
46 3 0.03
48 64 0.58
49 1 0.01
50 36 0.33
51 2 0.02
52 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (50 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATATATA
Found at i:71304853 original size:33 final size:33
Alignment explanation
Indices: 71304774--71304854 Score: 117
Period size: 33 Copynumber: 2.5 Consensus size: 33
71304764 ATGAATAACA
* *
71304774 CAGTATCAGTACAATCTTGGCCAAAGCCCTATT
1 CAGTATCAGTACAGTCTGGGCCAAAGCCCTATT
*
71304807 CAGTATTAGTACAGTCTGGGCCAAAGCCCTATT
1 CAGTATCAGTACAGTCTGGGCCAAAGCCCTATT
* *
71304840 CAGTAACAATACAGT
1 CAGTATCAGTACAGT
71304855 ACGATGTAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (33 bp):
CAGTATCAGTACAGTCTGGGCCAAAGCCCTATT
Found at i:71305320 original size:27 final size:27
Alignment explanation
Indices: 71305244--71305321 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
71305234 CATTTTATAA
** * *
71305244 TACAGGGGTATTACGGTCACTTTACCC
1 TACAGGGGCCTTACGATCATTTTACCC
* *
71305271 TACAGGGGCTTTACGGTCATTTTACCC
1 TACAGGGGCCTTACGATCATTTTACCC
*
71305298 TACAGGGGCCTTACGATCTTTTTA
1 TACAGGGGCCTTACGATCATTTTA
71305322 TCTATTAGGG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
TACAGGGGCCTTACGATCATTTTACCC
Found at i:71305444 original size:24 final size:27
Alignment explanation
Indices: 71305412--71305479 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 27
71305402 ACAAACCAAT
71305412 GGTATTTCTATAATTTTTG-AAA-A-G
1 GGTATTTCTATAATTTTTGTAAATAGG
71305436 GGTATTTCTATAA-TTTTGTAAATTAGG
1 GGTATTTCTATAATTTTTGTAAA-TAGG
*
71305463 GGTATTTCTGTAATTTT
1 GGTATTTCTATAATTTT
71305480 CCAAATCTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
23 5 0.13
24 16 0.42
26 1 0.03
27 13 0.34
28 3 0.08
ACGTcount: A:0.28, C:0.04, G:0.18, T:0.50
Consensus pattern (27 bp):
GGTATTTCTATAATTTTTGTAAATAGG
Found at i:71305573 original size:80 final size:79
Alignment explanation
Indices: 71305488--71305663 Score: 203
Period size: 80 Copynumber: 2.2 Consensus size: 79
71305478 TTCCAAATCT
* * * *
71305488 AGGGTATTTCGGTAATTTTCCAAATC-AGGGGTATTTTGGTAACTTTA-AAATCGAGGGTAGTTT
1 AGGGTATTTCGGTAATTTTACAAATCGA-GGGTATTTCGGTAACTTTACAAA-CGACGGTA-TTC
*
71305551 GGTAATTTCATAAACTA
63 AGTAATTTCATAAACTA
* * * *
71305568 GGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAACTACGGTATTCAGT
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAACTTTACAAACGACGGTATTCAGT
**
71305633 AATTTTGTAAACTA
66 AATTTCATAAACTA
*
71305647 AGGGTATTTCAGTAATT
1 AGGGTATTTCGGTAATT
71305664 CTACCCTACA
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
79 30 0.38
80 46 0.57
81 4 0.05
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (79 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGGTAACTTTACAAACGACGGTATTCAGT
AATTTCATAAACTA
Found at i:71305628 original size:53 final size:54
Alignment explanation
Indices: 71305434--71305621 Score: 222
Period size: 54 Copynumber: 3.5 Consensus size: 54
71305424 ATTTTTGAAA
** ** * * *
71305434 AGGGTATTTCTATAATTTTGTAAATTAGGGGTATTTCT-GTAATTTTCCAAATCT
1 AGGGTATTTCGGTAATTTTACAAACTAGGGGTATTT-TGGTAATTTTACAAATCG
* *
71305488 AGGGTATTTCGGTAATTTTCCAAA-TCAGGGGTATTTTGGTAACTTTA-AAATCG
1 AGGGTATTTCGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAATCG
* *
71305541 AGGGTAGTTT-GGTAATTTCATAAACTAGGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTA-TTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATCG
71305595 AGGGTATTTCGGTAATTTTACAAACTA
1 AGGGTATTTCGGTAATTTTACAAACTA
71305622 CGGTATTCAG
Statistics
Matches: 115, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
53 47 0.41
54 68 0.59
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
AGGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATCG
Found at i:71305652 original size:26 final size:26
Alignment explanation
Indices: 71305381--71305663 Score: 168
Period size: 27 Copynumber: 10.7 Consensus size: 26
71305371 ATCTATAAAC
*
71305381 CTAGGGTATTTCAGTGATTTTACAAA
1 CTAGGGTATTTCAGTAATTTTACAAA
* * **
71305407 CCAATGGTATTTCTA-TAATTTTTGAAA
1 -CTAGGGTATTTC-AGTAATTTTACAAA
**
71305434 --AGGGTATTTCTA-TAATTTTGTAAA
1 CTAGGGTATTTC-AGTAATTTTACAAA
* * *
71305458 TTAGGGGTATTTCTGTAATTTTCCAAA
1 CTA-GGGTATTTCAGTAATTTTACAAA
* *
71305485 TCTAGGGTATTTCGGTAATTTTCCAAA
1 -CTAGGGTATTTCAGTAATTTTACAAA
** *
71305512 -TCAGGGGTATTTTGGTAACTTTA-AAA
1 CT-A-GGGTATTTCAGTAATTTTACAAA
* * * *
71305538 TCGAGGGTAGTTT-GGTAATTTCATAAA
1 -CTAGGGTA-TTTCAGTAATTTTACAAA
**
71305565 CTAGGGGTATTTTGGTAATTTTACAAA
1 CTA-GGGTATTTCAGTAATTTTACAAA
* *
71305592 TCGAGGGTATTTCGGTAATTTTACAAA
1 -CTAGGGTATTTCAGTAATTTTACAAA
* **
71305619 CTACGGTA-TTCAGTAATTTTGTAAA
1 CTAGGGTATTTCAGTAATTTTACAAA
71305644 CTAAGGGTATTTCAGTAATT
1 CT-AGGGTATTTCAGTAATT
71305664 CTACCCTACA
Statistics
Matches: 209, Mismatches: 30, Indels: 34
0.77 0.11 0.12
Matches are distributed among these distances:
24 21 0.10
25 17 0.08
26 34 0.16
27 132 0.63
28 5 0.02
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (26 bp):
CTAGGGTATTTCAGTAATTTTACAAA
Found at i:71305682 original size:27 final size:27
Alignment explanation
Indices: 71305646--71305725 Score: 142
Period size: 27 Copynumber: 3.0 Consensus size: 27
71305636 TTTGTAAACT
*
71305646 AAGGGTATTTCAGTAATTCTACCCTAC
1 AAGGGCATTTCAGTAATTCTACCCTAC
*
71305673 AATGGCATTTCAGTAATTCTACCCTAC
1 AAGGGCATTTCAGTAATTCTACCCTAC
71305700 AAGGGCATTTCAGTAATTCTACCCTA
1 AAGGGCATTTCAGTAATTCTACCCTA
71305726 TAGATATGAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.33
Consensus pattern (27 bp):
AAGGGCATTTCAGTAATTCTACCCTAC
Found at i:71313694 original size:27 final size:27
Alignment explanation
Indices: 71313661--71313749 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
71313651 GGCATAATCA
*
71313661 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGTATTACGG
* * * * *
71313688 TCCTTTTACCCTATAAGGGCATTATGG
1 TCATTTTACCCTACAGGGGTATTACGG
**
71313715 TCATTTTACCCTACAGGGGTATTATAG
1 TCATTTTACCCTACAGGGGTATTACGG
71313742 TCATTTTA
1 TCATTTTA
71313750 TCAATTTTGG
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGTATTACGG
Found at i:71313749 original size:54 final size:54
Alignment explanation
Indices: 71313646--71313749 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
71313636 CACACGGAGC
* *
71313646 ATAAGGGCATAATCATCATTTTACCATACAGGGGTATTACGGTCCTTTTACCCT
1 ATAAGGGCATAATCATCATTTTACCATACAGGGGTATTACAGTCATTTTACCCT
* ** * *
71313700 ATAAGGGCATTATGGTCATTTTACCCTACAGGGGTATTATAGTCATTTTA
1 ATAAGGGCATAATCATCATTTTACCATACAGGGGTATTACAGTCATTTTA
71313750 TCAATTTTGG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (54 bp):
ATAAGGGCATAATCATCATTTTACCATACAGGGGTATTACAGTCATTTTACCCT
Found at i:71316777 original size:40 final size:40
Alignment explanation
Indices: 71316697--71316902 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
71316687 AGGATTTAGT
** * * * *
71316697 CGGATATAACCACTCGCAC-AAGGCCTTCAGGTCTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
* * *
71316736 CGGATATGGTCACTAGCATAAATGCCTTCGGGACTTGGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
* *
71316776 CGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
* * * *
71316816 CGGATTTAG-CAACTCGCACAAATGCCTTC-GGATCCTAGTC
1 CGGATATAGTC-ACTAGCACAAATGCCTTCGGGA-CTTAGCC
* * *
71316856 CGGATATAGTCACTAGCATAAAAGACTTCGGGACTTAGCC
1 CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
71316896 CGGATAT
1 CGGATAT
71316903 CATTCGAATA
Statistics
Matches: 135, Mismatches: 27, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
39 17 0.13
40 114 0.84
41 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
Found at i:71324851 original size:40 final size:40
Alignment explanation
Indices: 71324804--71324986 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
71324794 TCGCACAAGG
* * *
71324804 CCTTCAGGTCTTAGCCCGGATATGGTCACTAGCATAGATA
1 CCTTCAGGTCTTAGCCCGGATATAGTCACTAGCACAAATA
* * * *
71324844 CCTTCAGGACTTGGCCCGGATATAGTCGCTAGCACAAATG
1 CCTTCAGGTCTTAGCCCGGATATAGTCACTAGCACAAATA
* * *
71324884 CCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATG
1 CCTTCAGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATA
* *
71324924 CCTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAA-A
1 CCTTCAGG-TCTTAGCCCGGATATAGTCACTAGCACAAATA
* *
71324963 GCCTTCGGGACTTAGCCCGGATAT
1 -CCTTCAGGTCTTAGCCCGGATAT
71324987 CATTCGAATA
Statistics
Matches: 120, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 3 0.03
40 114 0.95
41 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCAGGTCTTAGCCCGGATATAGTCACTAGCACAAATA
Found at i:71324928 original size:80 final size:80
Alignment explanation
Indices: 71324767--71324986 Score: 234
Period size: 80 Copynumber: 2.8 Consensus size: 80
71324757 ACCCAAGTAT
** * * * *
71324767 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGCCTTCAGGTCTTAGCCCGGATATGG
1 CTTC-GGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
* *
71324829 TCACTAGCATAGATAC
65 TCACTAGCACAAATAC
* * *
71324845 CTTCAGGA-CTTGGCCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTC-GGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
* *
71324909 -CAACTCGCACAAATGC
65 TC-ACTAGCACAAATAC
* * *
71324925 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
71324987 CATTCGAATA
Statistics
Matches: 118, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
78 10 0.08
79 20 0.17
80 88 0.75
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATAC
Found at i:71338883 original size:45 final size:46
Alignment explanation
Indices: 71338809--71338895 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 46
71338799 AGAATAAATA
* *
71338809 GAAATAGATAAATAGAATACATTCAGAAATGATTGTGGTTTTTTTT
1 GAAATAGAGAAATAGAATACATTCAGAAATGAATGTGGTTTTTTTT
* * *
71338855 GAAATGGAGAAATGGAAT-CATTTAGAAATGAATGTGGTTTT
1 GAAATAGAGAAATAGAATACATTCAGAAATGAATGTGGTTTT
71338896 CTCAAAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
45 21 0.58
46 15 0.42
ACGTcount: A:0.39, C:0.03, G:0.22, T:0.36
Consensus pattern (46 bp):
GAAATAGAGAAATAGAATACATTCAGAAATGAATGTGGTTTTTTTT
Found at i:71340541 original size:29 final size:29
Alignment explanation
Indices: 71340455--71340685 Score: 196
Period size: 28 Copynumber: 8.3 Consensus size: 29
71340445 AGATTCTCAC
*
71340455 AAGG-TTTCCTTTATCAGAGG-TTGTCACA
1 AAGGCTTTCCTTTA-CAGAGGTTTGCCACA
* *
71340483 AAGGCTTT-CTTTACAAAGGTTCGCCACA
1 AAGGCTTTCCTTTACAGAGGTTTGCCACA
** *
71340511 AAGGCTTTCCTTTGTAGAGGTTTGCCGCA
1 AAGGCTTTCCTTTACAGAGGTTTGCCACA
* *
71340540 AAAGCTTTCCTTTACGGAGGTTTGCCACA
1 AAGGCTTTCCTTTACAGAGGTTTGCCACA
* * *
71340569 AAGGCTTTCCTTT-CAGAGGTTCGACATA
1 AAGGCTTTCCTTTACAGAGGTTTGCCACA
* * *
71340597 AAGGCTTT-CTTTTCAAAGGTTCT-CCATA
1 AAGGCTTTCCTTTACAGAGGTT-TGCCACA
* * *
71340625 AAGGCTTTCCTCT-CAGAGGTTCGCCATA
1 AAGGCTTTCCTTTACAGAGGTTTGCCACA
* *
71340653 AAGGCTTT-C---ATAGAGGTTTGCAACA
1 AAGGCTTTCCTTTACAGAGGTTTGCCACA
71340678 AAGGCTTT
1 AAGGCTTT
71340686 GTAATGGCCT
Statistics
Matches: 167, Mismatches: 28, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
25 19 0.11
27 10 0.06
28 81 0.49
29 57 0.34
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (29 bp):
AAGGCTTTCCTTTACAGAGGTTTGCCACA
Found at i:71340641 original size:56 final size:56
Alignment explanation
Indices: 71340468--71340661 Score: 221
Period size: 56 Copynumber: 3.4 Consensus size: 56
71340458 GTTTCCTTTA
* *
71340468 TCAGAGGTT-GTCACAAAGGCTTTCTTTACAAAGGTTCGCCACAAAGGCTTTCCTT
1 TCAGAGGTTCGCCACAAAGGCTTTCTTTACAAAGGTTCTCCACAAAGGCTTTCCTT
* * * * **
71340523 TGTAGAGGTTTGCCGCAAAAGCTTTCCTTTACGGAGGTT-TGCCACAAAGGCTTTCCTT
1 T-CAGAGGTTCGCCACAAAGGCTTT-CTTTACAAAGGTTCT-CCACAAAGGCTTTCCTT
* * * * *
71340581 TCAGAGGTTCGACATAAAGGCTTTCTTTTCAAAGGTTCTCCATAAAGGCTTTCCTC
1 TCAGAGGTTCGCCACAAAGGCTTTCTTTACAAAGGTTCTCCACAAAGGCTTTCCTT
*
71340637 TCAGAGGTTCGCCATAAAGGCTTTC
1 TCAGAGGTTCGCCACAAAGGCTTTC
71340662 ATAGAGGTTT
Statistics
Matches: 115, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
55 1 0.01
56 56 0.49
57 29 0.25
58 29 0.25
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (56 bp):
TCAGAGGTTCGCCACAAAGGCTTTCTTTACAAAGGTTCTCCACAAAGGCTTTCCTT
Found at i:71343054 original size:27 final size:26
Alignment explanation
Indices: 71342981--71343092 Score: 82
Period size: 27 Copynumber: 4.2 Consensus size: 26
71342971 AGCATGGCTG
* * **
71342981 CCAGAAGAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAACCA
*
71343007 CCAGATACAGATAATCATGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAACCA
*
71343035 CCAGAACAGATATATGTGGCAG-AGCA
1 CCAGAACAGATA-ATGTGGCAGAACCA
* * * *
71343061 CTCGGATCAGATAATTGTGGCATAGCCA
1 C-CAGAACAGATAA-TGTGGCAGAACCA
71343089 CCAG
1 CCAG
71343093 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
26 10 0.15
27 39 0.58
28 18 0.27
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAACCA
Found at i:71344538 original size:24 final size:24
Alignment explanation
Indices: 71344511--71344560 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
71344501 CTAGATTTCC
**
71344511 TCCCTTATCTGCTCCTAAAACCTA
1 TCCCTTATCAACTCCTAAAACCTA
*
71344535 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAAACCTA
71344559 TC
1 TC
71344561 TGACAGACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.38, G:0.02, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAAACCTA
Found at i:71349276 original size:259 final size:255
Alignment explanation
Indices: 71348799--71349295 Score: 868
Period size: 259 Copynumber: 1.9 Consensus size: 255
71348789 GCATAAGGGG
*
71348799 AAATTCAACCCAACCCAATTAGAGTAACCCCAATTCCTTCCTAGCTTTTTTTTTCTTCTTTCATT
1 AAATTCAACCCAACCCAATTAGAGTAACCCCAATTCCTTCCAAGCTTTTTTTTTCTTCTTTCATT
*
71348864 TTATAGCATATGTTTCATGCACTCATATTTAATTGTCATTGCATTTTTATAATTTTTAGCTGTTT
66 TTATAACATATGTTTCATGCACTCATATTTAATTGTCATTGCATTTTTATAATTTTTAGCTGTTT
* * * *
71348929 TTTTTTTTTGCATTTTGACATGTTTCATTGTTCATGCTTTGAGGGTAATGCATCCTTTAGGTTTG
131 TTTTTTTTTGCATTTTGACATGTTTCATTATTCAAGCTTTGAGGGCAATGCATCCCTTAGGTTTG
71348994 GGGGTGTGTTATGCTGTAAATATAGTATGCTGTAGATAGATGCCATAAATGTGTTGGCAA
196 GGGGTGTGTTATGCTGTAAATATAGTATGCTGTAGATAGATGCCATAAATGTGTTGGCAA
* * *
71349054 AAATTCAATCCAACCCAATTAGAGTAACCCTAATTCCTTCCAAGGTTTTTTTTTCGTCTTCTTTC
1 AAATTCAACCCAACCCAATTAGAGTAACCCCAATTCCTTCCAA-GCTTTTTTTT--TCTTCTTTC
*
71349119 ATTTTATAACATATGTTTCATGCATTCATATTTAATTGTCATTGCATTTTTATAATTTTTAGCTG
63 ATTTTATAACATATGTTTCATGCACTCATATTTAATTGTCATTGCATTTTTATAATTTTTAGCTG
71349184 TTTTTTTTTTTTTGCATTTTGACATGTTTCATTATTCAAGCTTTGAGGGCAATGCATCCCTTAGG
128 -TTTTTTTTTTTTGCATTTTGACATGTTTCATTATTCAAGCTTTGAGGGCAATGCATCCCTTAGG
71349249 TTTGGGGGTGTGTTATGCTGTAAATATAGTATGCTGTAGATAGATGC
192 TTTGGGGGTGTGTTATGCTGTAAATATAGTATGCTGTAGATAGATGC
71349296 TTTAATATTC
Statistics
Matches: 228, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
255 40 0.18
256 9 0.04
258 72 0.32
259 107 0.47
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.45
Consensus pattern (255 bp):
AAATTCAACCCAACCCAATTAGAGTAACCCCAATTCCTTCCAAGCTTTTTTTTTCTTCTTTCATT
TTATAACATATGTTTCATGCACTCATATTTAATTGTCATTGCATTTTTATAATTTTTAGCTGTTT
TTTTTTTTTGCATTTTGACATGTTTCATTATTCAAGCTTTGAGGGCAATGCATCCCTTAGGTTTG
GGGGTGTGTTATGCTGTAAATATAGTATGCTGTAGATAGATGCCATAAATGTGTTGGCAA
Found at i:71357133 original size:47 final size:47
Alignment explanation
Indices: 71357064--71357243 Score: 168
Period size: 50 Copynumber: 3.7 Consensus size: 47
71357054 TAGAATGCCC
* *
71357064 ATGCCATGTCCCAGCCATGGTCTTACACTGGCTCATCCATCAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCG
* * * *
71357111 ATGCCATGTCCCAGGCATGGTCTTACACT-GACT-ATCGAAATCGAGGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATC--CATC-AAGTCG
* * * *
71357160 ACGCCATGTCCCAGACATGGTCTTACACTAGCTCTTGCAT-ATTCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCA--AGT--CG
*
71357210 ATGCCATGTCCAAGACATGGTCTTACACTAGCTC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC
71357244 TCATAATGTG
Statistics
Matches: 110, Mismatches: 13, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
46 5 0.05
47 30 0.27
48 7 0.06
49 33 0.30
50 35 0.32
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTCG
Found at i:71357179 original size:49 final size:47
Alignment explanation
Indices: 71357066--71357238 Score: 152
Period size: 49 Copynumber: 3.6 Consensus size: 47
71357056 GAATGCCCAT
* * * *
71357066 GCCATGTCCCAGCCATGGTCTTACACTGGCTCATCCATCAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGTCGAC
* * *
71357113 GCCATGTCCCAGGCATGGTCTTACACTGACT-ATCGAAATCGAGGTTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATC-AAGTCGAC
* ** * *
71357162 GCCATGTCCCAGACATGGTCTTACACT-AGCTCTTGCATATTCGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTCAT-CA-A-TCAAGTCGAC
*
71357212 GCCATGTCCAAGACATGGTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
71357239 AGCTCTCATA
Statistics
Matches: 104, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
46 3 0.03
47 29 0.28
48 4 0.04
49 34 0.33
50 31 0.30
51 3 0.03
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGTCGAC
Found at i:71359218 original size:33 final size:33
Alignment explanation
Indices: 71359181--71359249 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
71359171 AAATAAATCA
71359181 ATCATAGATGAGCTCATTACGATATAATCTTTT
1 ATCATAGATGAGCTCATTACGATATAATCTTTT
*
71359214 ATCATAGATGAGCTTATTACGATATAATCTTTT
1 ATCATAGATGAGCTCATTACGATATAATCTTTT
71359247 ATC
1 ATC
71359250 TCATTTCATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (33 bp):
ATCATAGATGAGCTCATTACGATATAATCTTTT
Found at i:71367126 original size:40 final size:40
Alignment explanation
Indices: 71366914--71367119 Score: 324
Period size: 40 Copynumber: 5.2 Consensus size: 40
71366904 AACCCAAGTA
* * ** *
71366914 CCTTCGGGATTTAG-TCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
71366953 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
71366993 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACATATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
71367033 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
71367073 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
71367113 CCTTCGG
1 CCTTCGG
71367120 ATCTTAGTCC
Statistics
Matches: 156, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 13 0.08
40 143 0.92
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:71368494 original size:13 final size:13
Alignment explanation
Indices: 71368476--71368501 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71368466 ATTTTTATTT
71368476 TTAACATAAAATA
1 TTAACATAAAATA
71368489 TTAACATAAAATA
1 TTAACATAAAATA
71368502 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:71379270 original size:13 final size:13
Alignment explanation
Indices: 71379252--71379276 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71379242 AGGCCGTGTG
71379252 AGGGACACGGGCC
1 AGGGACACGGGCC
71379265 AGGGACACGGGC
1 AGGGACACGGGC
71379277 GTGTGCTCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:71400601 original size:40 final size:40
Alignment explanation
Indices: 71400371--71400602 Score: 297
Period size: 40 Copynumber: 5.8 Consensus size: 40
71400361 CATTTGAATG
* * *
71400371 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * * * *
71400411 TTATCCGGGCTAAGTCCCAAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
71400451 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
71400491 ATATCCGGTCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
71400531 ATATCCGGGCTAAGAGCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
71400571 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
71400603 TTGTGGTTAT
Statistics
Matches: 176, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 173 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:71416029 original size:27 final size:26
Alignment explanation
Indices: 71415995--71416114 Score: 132
Period size: 27 Copynumber: 4.5 Consensus size: 26
71415985 TGGATAAGTT
* *
71415995 GTAGAATTACTAAAATACCTCTGTAAG
1 GTAGAATTACCAAAATACC-CTGTAGG
*
71416022 GTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCAAAATACCC-TGTAGG
* *
71416049 GTAGAAATACCAAAATACCCCTATAGG
1 GTAGAATTACCAAAATA-CCCTGTAGG
* *
71416076 GTAGAATTACCGAGATACCCTTGTAGG
1 GTAGAATTACCAAAATACCC-TGTAGG
*
71416103 GTAAAATTACCA
1 GTAGAATTACCA
71416115 TTTTGCGTCT
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
26 4 0.05
27 71 0.91
28 3 0.04
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (26 bp):
GTAGAATTACCAAAATACCCTGTAGG
Found at i:71416079 original size:54 final size:54
Alignment explanation
Indices: 71415995--71416114 Score: 170
Period size: 54 Copynumber: 2.2 Consensus size: 54
71415985 TGGATAAGTT
* * * *
71415995 GTAGAATTACTAAAATACCTCTGTAAGGTAGAATTACCGAAATACCCTTGTAGG
1 GTAGAAATACCAAAATACCCCTATAAGGTAGAATTACCGAAATACCCTTGTAGG
* *
71416049 GTAGAAATACCAAAATACCCCTATAGGGTAGAATTACCGAGATACCCTTGTAGG
1 GTAGAAATACCAAAATACCCCTATAAGGTAGAATTACCGAAATACCCTTGTAGG
71416103 GTA-AAATTACCA
1 GTAGAAA-TACCA
71416115 TTTTGCGTCT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 3 0.05
54 56 0.95
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (54 bp):
GTAGAAATACCAAAATACCCCTATAAGGTAGAATTACCGAAATACCCTTGTAGG
Found at i:71416508 original size:24 final size:24
Alignment explanation
Indices: 71416480--71416535 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
71416470 GGCCGAAAAC
* *
71416480 GGGCCAACAGGCTAACGGGCCAAT
1 GGGCCAACAGACCAACGGGCCAAT
71416504 GGGCCAACAGACCAACGGGCCAAT
1 GGGCCAACAGACCAACGGGCCAAT
71416528 GGGCCAAC
1 GGGCCAAC
71416536 TTTGGTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.30, C:0.32, G:0.32, T:0.05
Consensus pattern (24 bp):
GGGCCAACAGACCAACGGGCCAAT
Found at i:71416509 original size:8 final size:8
Alignment explanation
Indices: 71416477--71416535 Score: 64
Period size: 8 Copynumber: 7.4 Consensus size: 8
71416467 TTGGGCCGAA
71416477 AACGGGCC
1 AACGGGCC
* *
71416485 AACAGGCT
1 AACGGGCC
71416493 AACGGGCC
1 AACGGGCC
*
71416501 AATGGGCC
1 AACGGGCC
* *
71416509 AACAGACC
1 AACGGGCC
71416517 AACGGGCC
1 AACGGGCC
*
71416525 AATGGGCC
1 AACGGGCC
71416533 AAC
1 AAC
71416536 TTTGGTAAAA
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
8 39 1.00
ACGTcount: A:0.32, C:0.32, G:0.31, T:0.05
Consensus pattern (8 bp):
AACGGGCC
Found at i:71426475 original size:45 final size:44
Alignment explanation
Indices: 71426411--71426497 Score: 156
Period size: 45 Copynumber: 2.0 Consensus size: 44
71426401 CCAAAACATG
71426411 TGTCACATATATCATGAACTCAAACCACAACTCAATGAGTTCATA
1 TGTCACATATATCATGAACTCAAACCACAACTC-ATGAGTTCATA
*
71426456 TGTCACATATATCATGAACTCAGACCACAACTCATGAGTTCA
1 TGTCACATATATCATGAACTCAAACCACAACTCATGAGTTCA
71426498 GATCGCATAG
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
44 9 0.22
45 32 0.78
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.26
Consensus pattern (44 bp):
TGTCACATATATCATGAACTCAAACCACAACTCATGAGTTCATA
Found at i:71431806 original size:3 final size:3
Alignment explanation
Indices: 71431798--71431824 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
71431788 CTCTAAAGCA
71431798 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
71431825 GAAAAACTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:71432212 original size:24 final size:24
Alignment explanation
Indices: 71432180--71432226 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
71432170 TCTAATGTAA
71432180 AATGATTAATATATTTATTTTTTT
1 AATGATTAATATATTTATTTTTTT
71432204 AATGATTAATATATTTATTTTTT
1 AATGATTAATATATTTATTTTTT
71432227 AATAAAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (24 bp):
AATGATTAATATATTTATTTTTTT
Found at i:71435031 original size:46 final size:46
Alignment explanation
Indices: 71434973--71435194 Score: 173
Period size: 46 Copynumber: 4.7 Consensus size: 46
71434963 GGTGGTATGT
* *
71434973 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGTCATTGAGATGA
1 GAGCCAGTGTAAGACCTGTCTGGGACATGCATCGTCATCGAGATGA
* * * * *
71435019 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGTCCTCGGGATATA
1 GAGCCAGTGTAAGACCTGTCTGGGACATGCATCGTCATCGAGAT-GA
* * * * * * ** *
71435066 CAACCTAGTGTAAGACCTGTCTCGGACATGGA--GTTAGCTTGTTATGT
1 GAGCC-AGTGTAAGACCTGTCTGGGACATGCATCGTCA--TCGAGATGA
* *
71435113 GA--CAGTGTAAGACCTGTCTGGGACATGGCATTGACATCGATAGATGA
1 GAGCCAGTGTAAGACCTGTCTGGGACAT-GCATCGTCATCG--AGATGA
*
71435160 GAGCCAGTGTAAGACCTATCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCTGTCTGGGACAT-GCATCG
71435195 GTTCAATATA
Statistics
Matches: 136, Mismatches: 29, Indels: 19
0.74 0.16 0.10
Matches are distributed among these distances:
44 22 0.16
45 5 0.04
46 42 0.31
47 11 0.08
48 27 0.20
49 29 0.21
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
GAGCCAGTGTAAGACCTGTCTGGGACATGCATCGTCATCGAGATGA
Found at i:71440167 original size:36 final size:39
Alignment explanation
Indices: 71440100--71440202 Score: 140
Period size: 36 Copynumber: 2.6 Consensus size: 39
71440090 CCAAGATTAC
71440100 ATCATATCTTCAAGATTGTATATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTG-ATATCATATCTAAGATTGCAT
71440140 ATCATATC-T-AAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
71440176 ATCATATCATATCTAAGATTGCATATC
1 ATCATATC-T-TC-AAGATTG-ATATC
71440203 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 11
0.84 0.00 0.16
Matches are distributed among these distances:
36 28 0.50
38 7 0.12
39 2 0.04
40 8 0.14
41 7 0.12
43 4 0.07
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.39
Consensus pattern (39 bp):
ATCATATCTTCAAGATTGATATCATATCTAAGATTGCAT
Found at i:71440185 original size:24 final size:24
Alignment explanation
Indices: 71440156--71440202 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
71440146 TCTAAGATTG
71440156 TATCATATCTAAGATTGCATATCA
1 TATCATATCTAAGATTGCATATCA
71440180 TATCATATCTAAGATTGCATATC
1 TATCATATCTAAGATTGCATATC
71440203 CTTAAAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (24 bp):
TATCATATCTAAGATTGCATATCA
Found at i:71440202 original size:19 final size:19
Alignment explanation
Indices: 71440100--71440183 Score: 127
Period size: 19 Copynumber: 4.4 Consensus size: 19
71440090 CCAAGATTAC
*
71440100 ATCATATCTTCAAGATTGTAT
1 ATCATATC-T-AAGATTGCAT
71440121 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
71440140 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
71440157 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
71440176 ATCATATC
1 ATCATATC
71440184 ATATCTAAGA
Statistics
Matches: 60, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
17 17 0.28
19 34 0.57
20 1 0.02
21 8 0.13
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:71440766 original size:87 final size:86
Alignment explanation
Indices: 71440619--71441104 Score: 255
Period size: 87 Copynumber: 5.6 Consensus size: 86
71440609 TTTTGACAAA
* * * * *
71440619 ACAAAGATGCCAAATCATCTTAGATCTGCTTCAGCATAAACA-CGTGAAAGCCAAATCTGCTATG
1 ACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATC-TGAAAGTCAAACCTGCTATG
71440683 TCTTCGATTTGCTCCTTGTGAAC
65 TCTTCGATTTGCTCCTT-TGAAC
* * *
71440706 ACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTA-AAATCATCTGAAGGTTAGACCTGCTATG
1 ACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAA-CATCTGAAAGTCAAACCTGCTATG
* * * *
71440770 TACCT-G--CT-CTCCATCGAA-
65 T-CTTCGATTTGCTCCTTTGAAC
** * ** * * *
71440788 A-TGGAGATGCCAGATTAGTTATCTTGGATCTGCTTTGGTGTAAGAACATCCGAAAGTCAAATCT
1 ACAAG-GATGCCA-A--A-TCATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAACCT
* *
71440852 GCTATGTCTTCGATTTGTTCCTTATAAAC
59 GCTATGTCTTCGATTTGCTCCTT-TGAAC
* * * * *
71440881 ACAAGAATTCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGT
1 ACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAACCTGCTATGT
* * * *
71440946 ACCT-G--CT-CTCCGTCGAA-
66 -CTTCGATTTGCTCCTTTGAAC
** * * * ** * *
71440963 A-TGGAGATGCCATATCTGTTATCTTAGATCTTCTTTGGTGTGAGAACATCTGAAAGTCAAATCT
1 ACAAG-GATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAACCT
* * *
71441027 GCTATGTTTTCGATTTGTTCCTTGTAAAC
59 GCTATGTCTTCGATTTGCTCCTT-TGAAC
** * *
71441056 ACAATAATGCCAAATCATCTTGGATCTGTTTTAGTATAAACATCT-AAAG
1 ACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAG
71441105 GTTAGACCTA
Statistics
Matches: 287, Mismatches: 79, Indels: 67
0.66 0.18 0.15
Matches are distributed among these distances:
81 2 0.01
82 17 0.06
83 6 0.02
84 9 0.03
85 3 0.01
86 41 0.14
87 86 0.30
88 53 0.18
89 37 0.13
90 3 0.01
91 8 0.03
92 5 0.02
93 16 0.06
94 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (86 bp):
ACAAGGATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAACCTGCTATGT
CTTCGATTTGCTCCTTTGAAC
Found at i:71440867 original size:175 final size:175
Alignment explanation
Indices: 71440664--71441246 Score: 900
Period size: 175 Copynumber: 3.3 Consensus size: 175
71440654 ATAAACACGT
* * * *
71440664 GAAAGCCAAATCTGCTATGTCTTCGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
*
71440729 ATCTGCTTCAGTA-AAATCATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCATCGAAATGGA
66 ATCTGCTTCAGTATAAA-CATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGA
*
71440793 GATGCCAGAT-TAGTTATCTTGGATCTGCTTTGGTGTAAGAACATCC
130 GATGCCAGATCT-GTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
* *
71440839 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTATAAACACAAGAATTCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
71440904 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
* * * *
71440969 ATGCCATATCTGTTATCTTAGATCTTCTTTGGTGTGAGAACATCT
131 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
* *
71441014 GAAAGTCAAATCTGCTATGTTTTCGATTTGTTCCTTGTAAACACAATAATGCCAAATCATCTTGG
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
* * * *
71441079 ATCTGTTTTAGTATAAACATCTAAAGGTTAGACCTACTATGTACCTGCTCTCCGTCGAAATGGAG
66 ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
* * *
71441144 ATGCCAGATCTGTTACCATGGATTTGCTTTGGTGTGAGAACATCC
131 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
* * * * *
71441189 GAAAATCAGATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAAATC
1 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATC
71441247 TGCTATCTTC
Statistics
Matches: 372, Mismatches: 34, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
175 368 0.99
176 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (175 bp):
GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
ATCTGCTTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAG
ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCC
Found at i:71441264 original size:44 final size:45
Alignment explanation
Indices: 71441198--71441286 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 45
71441188 CGAAAATCAG
* * *
71441198 ATCTGCTATGTCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAA
1 ATCTGCTA-GTCTTCAACTTGTTCCCTATAAACACAGGGATGCCAA
71441244 ATCTGCTA-TCTTCAACTTGTTCCCTATAAACACAGGGATGCCA
1 ATCTGCTAGTCTTCAACTTGTTCCCTATAAACACAGGGATGCCA
71441287 TGTTAAAATC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 32 0.80
46 8 0.20
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (45 bp):
ATCTGCTAGTCTTCAACTTGTTCCCTATAAACACAGGGATGCCAA
Found at i:71441393 original size:44 final size:45
Alignment explanation
Indices: 71441208--71441393 Score: 132
Period size: 44 Copynumber: 4.2 Consensus size: 45
71441198 ATCTGCTATG
* * * **
71441208 TCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAAATC-TGCTA
1 TCTTTGATCTGTTCCCTATAAACACAGGGATGCCAAATCTTAATA
* * * *
71441252 TC-TTCAACTTGTTCCCTATAAACACAGGGATGCC--ATGTTAAAA
1 TCTTTGATC-TGTTCCCTATAAACACAGGGATGCCAAATCTTAATA
* * * * * * **
71441295 TCTTTGATCTGTTTCGCTGTAAGCACAGGAATGTCAGAT-TTGCTA
1 TCTTTGATCTG-TTCCCTATAAACACAGGGATGCCAAATCTTAATA
* * *
71441340 TCTTCGATCTGTTCCCTATAAAGACAGGGATGCCAAATCTT-ATT
1 TCTTTGATCTGTTCCCTATAAACACAGGGATGCCAAATCTTAATA
71441384 TCTTTGATCT
1 TCTTTGATCT
71441394 ACATTGTCCC
Statistics
Matches: 105, Mismatches: 30, Indels: 14
0.70 0.20 0.09
Matches are distributed among these distances:
42 2 0.02
43 8 0.08
44 78 0.74
45 15 0.14
46 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (45 bp):
TCTTTGATCTGTTCCCTATAAACACAGGGATGCCAAATCTTAATA
Found at i:71447065 original size:46 final size:44
Alignment explanation
Indices: 71447006--71447120 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
71446996 TGACAGACAA
* *
71447006 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
71447052 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
71447096 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
71447121 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:71447101 original size:44 final size:45
Alignment explanation
Indices: 71447006--71447139 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
71446996 TGACAGACAA
* *
71447006 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
71447052 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
71447096 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
71447140 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:71448851 original size:530 final size:529
Alignment explanation
Indices: 71447851--71449440 Score: 2938
Period size: 530 Copynumber: 3.0 Consensus size: 529
71447841 AACAGGTAAA
71447851 GGTATTATATTTTATGAGATATCTGAGTTTTAGTGAAACAGGGTCAGAG-AGATTTCTGGATCCC
1 GGTATTATATTTTATGAGATATCTGAGTTTTAGTGAAACAGGGTCAGAGCA-ATTTCTGGATCCC
*
71447915 CTATTTCAACTTTGGAAATTCACCATAAATTGTACAAAACTAATT---AGGTGTAATTTACATGG
65 CTATTTCAACTTTGGAAATTCACCATAAATTGTACAAAACTAATTAGAAGGTGTAATTTATATGG
71447977 TTAGAATCCTTATTGAATCTAGTTTTGAGAGAAACAAACGGCTTAGTCATATGAATTTTTTACAG
130 TTAGAATCCTTATTGAATCTAGTTTTGAGAGAAACAAACGGCTTAGTCATATGAATTTTTTACAG
* * *
71448042 GAAGAAACATGGCTCTTAGTAAGAAGAGGTCAGAGTAGTTAAGTTTTGAAACAGGGGAAACTTTA
195 GAAGAAACATGGCTCGTAGTAAGAAGAGGTCAGTGTAGTTGAGTTTTGAAACAGGGGAAACTTTA
*
71448107 ACTAATAAACTGTACTAATTGGCCAAGTCAAAAATTATAG-AAAAATTAGTAGATAGATATATGA
260 ACTAATAAACTGTACTAATTGGCCAAGTCAAAAATTCTAGAAAAAATTAGTAGATAGATATATGA
71448171 GTCTAGTTTCAGGAAAAATTTACGGATCTAAATTTTGAGTTTTGAAACTCGAGAAATGAATTTTT
325 GTCTAGTTTCAGGAAAAATTTACGGATCTAAATTTTGAGTTTTGAAACTCGAGAAATGAATTTTT
71448236 AAGCAACCATGACGCAGAAAAACAGTTTATTCCAAAAATTAAAATAAGTGGTTTAGAGTTGTTTA
390 AAGCAACCATGACGCAGAAAAACAGTTTATTCCAAAAATTAAAATAAGTGGTTTAGAGTTGTTTA
* *
71448301 AAAGGTAAGATAAGTTTAGTAACACCTCAAGCTTGACTCCGGTGATGGTTTCAGGCATGGGGGTG
455 AAAGGTAAGATAAGTTTAGTAACACCTCAAGCTTGACTCCGGTGATGGTTTCGGGCGTGGGGGTG
71448366 TTACATTATT
520 TTACATTATT
*
71448376 GGTATTATATTTTATGAGATATCTGAGTTTTAGTGAAACAGAGTCAGAGCAATTTCTGGATCCCC
1 GGTATTATATTTTATGAGATATCTGAGTTTTAGTGAAACAGGGTCAGAGCAATTTCTGGATCCCC
71448441 TATTTCAACTTTGGAAATTCACCATAAATTGTACAAAACTAATTAGAAGGTGTAATTTATATGGT
66 TATTTCAACTTTGGAAATTCACCATAAATTGTACAAAACTAATTAGAAGGTGTAATTTATATGGT
*
71448506 TAGAATCCTTATTGAATCTAGTTTTGAGAGAAACAAACGTCTTAGTCATATGAATTTTTTACAGG
131 TAGAATCCTTATTGAATCTAGTTTTGAGAGAAACAAACGGCTTAGTCATATGAATTTTTTACAGG
71448571 AAGAAACATGGCTCGTAGTAAGAAGAGGTCAGTGTAGTTGAGTTTTGAAACAGGGGAAACTTTAA
196 AAGAAACATGGCTCGTAGTAAGAAGAGGTCAGTGTAGTTGAGTTTTGAAACAGGGGAAACTTTAA
71448636 CTAATAAACTGTACTAATTGGCCAAGTCAAAAATTCTAGAAACAAATTAGTAGATAGATATATGA
261 CTAATAAACTGTACTAATTGGCCAAGTCAAAAATTCTAGAAA-AAATTAGTAGATAGATATATGA
71448701 GTCTAGTTTCAGGAAAAATTTACGGATCTAAATTTTGAGTTTTGAAACTCGAGAAATGAATTTTT
325 GTCTAGTTTCAGGAAAAATTTACGGATCTAAATTTTGAGTTTTGAAACTCGAGAAATGAATTTTT
*
71448766 AAGCAACCATGACGCAGAAAAATAGTTTATTCCAAAAATTAAAATAAGTGGTTTAGAGTTGTTTA
390 AAGCAACCATGACGCAGAAAAACAGTTTATTCCAAAAATTAAAATAAGTGGTTTAGAGTTGTTTA
71448831 AAAGGTAAGATAAGTTTAGTAACACCTCAAGCTTGACTCCGGTGATGGTTTCGGGCGTGGGGGTG
455 AAAGGTAAGATAAGTTTAGTAACACCTCAAGCTTGACTCCGGTGATGGTTTCGGGCGTGGGGGTG
71448896 TTACATTATT
520 TTACATTATT
*
71448906 GGTATTATATTTTATGAGATATCTGAGTTTTAGTGAAACAGGGTCAGAGCGATTTCTGGATCCCC
1 GGTATTATATTTTATGAGATATCTGAGTTTTAGTGAAACAGGGTCAGAGCAATTTCTGGATCCCC
*
71448971 TGTTTCAACTTTGGAAATTCACCATAAATTGTACAAAACTAATTAGAAGGTGTAATTTATATGGT
66 TATTTCAACTTTGGAAATTCACCATAAATTGTACAAAACTAATTAGAAGGTGTAATTTATATGGT
* *
71449036 TAGAATCCTTATTGAATCTAGTTTTGAGAGAAATAAACGGCTTAGTCATATGAATTTTGTACAGG
131 TAGAATCCTTATTGAATCTAGTTTTGAGAGAAACAAACGGCTTAGTCATATGAATTTTTTACAGG
* *
71449101 AAGAAACATGGCTCGTAGTAATAAGAGGTCAGTGTAGTTGAGTTTTGAAATAGGGGAAACTTTAA
196 AAGAAACATGGCTCGTAGTAAGAAGAGGTCAGTGTAGTTGAGTTTTGAAACAGGGGAAACTTTAA
71449166 CTAATAAACTGTACTAATTGGCCAAGTCAAAAATTCTAGAAAAAAATTAGTAGATAGATATATGA
261 CTAATAAACTGTACTAATTGGCCAAGTCAAAAATTCTAG-AAAAAATTAGTAGATAGATATATGA
*
71449231 GTCTAGTTTTAGGAAAAATTTACGGATCTAAATTTTGAGTTTTGAAACTCGAGAAATGAATTTTT
325 GTCTAGTTTCAGGAAAAATTTACGGATCTAAATTTTGAGTTTTGAAACTCGAGAAATGAATTTTT
*
71449296 AAGCAACCATGATGCAGAAAAACAGTTTATTCCAAAAATTAAAATAAGTGGTTTAGAGTTGTTTA
390 AAGCAACCATGACGCAGAAAAACAGTTTATTCCAAAAATTAAAATAAGTGGTTTAGAGTTGTTTA
* *
71449361 AAAGGTAAGATAAGTTTAGTAACACCTCAAGCTTGACTCCGGTGATGGTTTCGGGCGCGGGGGAG
455 AAAGGTAAGATAAGTTTAGTAACACCTCAAGCTTGACTCCGGTGATGGTTTCGGGCGTGGGGGTG
71449426 TTACATTATT
520 TTACATTATT
71449436 GGTAT
1 GGTAT
71449441 CAGAGTAGGT
Statistics
Matches: 1035, Mismatches: 23, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
525 106 0.10
526 1 0.00
528 181 0.17
529 2 0.00
530 742 0.72
531 3 0.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.32
Consensus pattern (529 bp):
GGTATTATATTTTATGAGATATCTGAGTTTTAGTGAAACAGGGTCAGAGCAATTTCTGGATCCCC
TATTTCAACTTTGGAAATTCACCATAAATTGTACAAAACTAATTAGAAGGTGTAATTTATATGGT
TAGAATCCTTATTGAATCTAGTTTTGAGAGAAACAAACGGCTTAGTCATATGAATTTTTTACAGG
AAGAAACATGGCTCGTAGTAAGAAGAGGTCAGTGTAGTTGAGTTTTGAAACAGGGGAAACTTTAA
CTAATAAACTGTACTAATTGGCCAAGTCAAAAATTCTAGAAAAAATTAGTAGATAGATATATGAG
TCTAGTTTCAGGAAAAATTTACGGATCTAAATTTTGAGTTTTGAAACTCGAGAAATGAATTTTTA
AGCAACCATGACGCAGAAAAACAGTTTATTCCAAAAATTAAAATAAGTGGTTTAGAGTTGTTTAA
AAGGTAAGATAAGTTTAGTAACACCTCAAGCTTGACTCCGGTGATGGTTTCGGGCGTGGGGGTGT
TACATTATT
Found at i:71455485 original size:46 final size:44
Alignment explanation
Indices: 71455426--71455540 Score: 122
Period size: 44 Copynumber: 2.6 Consensus size: 44
71455416 ACAGGACAGA
* *
71455426 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTAGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTAGAG
* * * * *
71455472 ACAGGATTGAGCCATATAATTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTAGAG
* **
71455516 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
71455541 GTCAAAGACA
Statistics
Matches: 56, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
44 32 0.57
46 24 0.43
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTAGAG
Found at i:71456924 original size:46 final size:46
Alignment explanation
Indices: 71456874--71457049 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
71456864 TGATTGAGCA
71456874 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71456920 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71456965 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
71457013 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71457050 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71457030 original size:93 final size:93
Alignment explanation
Indices: 71456871--71457042 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
71456861 GGATGATTGA
*
71456871 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
71456936 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71456964 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
71457028 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
71457043 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71461631 original size:47 final size:47
Alignment explanation
Indices: 71461580--71461710 Score: 194
Period size: 46 Copynumber: 2.8 Consensus size: 47
71461570 TGATTGAGCA
*
71461580 TCCGAACTCGTTGAGTTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTTGAGTCCGAGTTCACTTATGGATGCGAACG
71461627 TCCGAACTCGTTGAG-TTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * **
71461673 -CCTGAGCTCGTTGAGTTGGAGTCCGAGTTTGCTTATGG
1 TCC-GAACTCGTTGAGTTTGAGTCCGAGTTCACTTATGG
71461711 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
45 2 0.03
46 41 0.53
47 34 0.44
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:71463161 original size:76 final size:75
Alignment explanation
Indices: 71463034--71463192 Score: 284
Period size: 76 Copynumber: 2.1 Consensus size: 75
71463024 AGTGGTTCAA
*
71463034 CAGGTCAGGATACGAGTTAAATTACAGTGAATTAACAGCAGAGGAAAAGTAGATTATACTTATGA
1 CAGGTAAGGATACGAGTTAAATTACAGTGAATTAACAGCAGAGGAAAAGTAGATTA-ACTTATG-
71463099 AAAAGGAAAGGT
64 AAAAGGAAAGGT
71463111 CAGGTAAGGATACGAGTTAAATTACA-TGAATTAACAGCAGAGGAAAAGTAGATTAACTTATGAA
1 CAGGTAAGGATACGAGTTAAATTACAGTGAATTAACAGCAGAGGAAAAGTAGATTAACTTATGAA
71463175 AAGGAAAGGT
66 AAGGAAAGGT
71463185 CAGGTAAG
1 CAGGTAAG
71463193 AAAGAAGGTA
Statistics
Matches: 81, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
74 20 0.25
75 7 0.09
76 29 0.36
77 25 0.31
ACGTcount: A:0.45, C:0.09, G:0.25, T:0.21
Consensus pattern (75 bp):
CAGGTAAGGATACGAGTTAAATTACAGTGAATTAACAGCAGAGGAAAAGTAGATTAACTTATGAA
AAGGAAAGGT
Found at i:71466186 original size:22 final size:21
Alignment explanation
Indices: 71466156--71466221 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
71466146 TACCAATTCA
71466156 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
71466178 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
71466199 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
71466218 ATCT
1 ATCT
71466222 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:71466208 original size:19 final size:19
Alignment explanation
Indices: 71466173--71466270 Score: 164
Period size: 19 Copynumber: 5.2 Consensus size: 19
71466163 AGATTACAAG
71466173 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
71466194 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
71466213 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
71466230 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
71466249 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
71466268 ATC
1 ATC
71466271 CTTAAAGATT
Statistics
Matches: 75, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.23
19 49 0.65
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:71466237 original size:36 final size:37
Alignment explanation
Indices: 71466173--71466270 Score: 153
Period size: 36 Copynumber: 2.6 Consensus size: 37
71466163 AGATTACAAG
71466173 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
71466213 ATCATATCTAAGATTG-TATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
71466249 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
71466271 CTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
36 36 0.64
38 11 0.20
39 1 0.02
40 8 0.14
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:71467034 original size:175 final size:174
Alignment explanation
Indices: 71466740--71467665 Score: 1510
Period size: 175 Copynumber: 5.3 Consensus size: 174
71466730 ACGTGAATGC
* * * **
71466740 CAAATCTGCTATGTCTTTGATTTGTTCCTTATAAACACAAGAATACCAAATCATCTTAAATCTGC
1 CAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
*
71466805 TTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCATCGAAATGGAGATGCCA
66 TTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCA
71466870 GATTAGTTATCTTGGATCTGCTTTGGTGTAAGAACATCCGAAAGT
131 GATT-GTTATCTTGGATCTGCTTTGGTGTAAGAACATCCGAAAGT
71466915 CAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
1 CAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
* *
71466980 TTCAGTATAAACATCTGAAGGTTAGACCTTCTATGTACCTGCTCTCCGTCGAAATAGAGATGCCA
66 TTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCA
* **
71467045 GATTTGTTATCTTAGATCTGCTTTGGTGTAAGAACATTTGAAAGT
131 GA-TTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCCGAAAGT
* * *
71467090 CAAATCTGCTATGTCTTCAATTTGTTTCTTGTAAACACAAGAATGCCAAATCATCTTAGATCTGC
1 CAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
*
71467155 TTCAATATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCA
66 TTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCA
* *
71467220 GATCTGTTATCTTGGATCTACTTTGGTGTAAGAACATCCAAAAGT
131 GAT-TGTTATCTTGGATCTGCTTTGGTGTAAGAACATCCGAAAGT
* *
71467265 CAAATCTACTATGTCTTCAATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
1 CAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
* * *
71467330 TTCAGTATAAACATCTGAAGGTTAGACCTACTATGTACCTGCTCTCCGTCGAAGTGGAGATTCCA
66 TTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCA
*
71467395 GATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGT
131 GAT-TGTTATCTTGGATCTGCTTTGGTGTAAGAACATCCGAAAGT
* *
71467440 CAAATCTGCTATGTTTTCGATTTGTTCCTTGTAAACACAATAATGCCAAATCATCTTGGATCTGC
1 CAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
* *
71467505 TTCAGTATAAACATCTGAAGGTTAGACCAGCTATGTACCTGCTCTCCGTCGAAATGGAGATGTCA
66 TTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCA
* *
71467570 GATTTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAAT
131 GA-TTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCCGAAAGT
* * * *
71467615 TAGATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAGGGATGCCAAAT
1 CAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAAT
71467666 TTGCTATCTT
Statistics
Matches: 700, Mismatches: 48, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
174 1 0.00
175 696 0.99
176 3 0.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (174 bp):
CAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGATCTGC
TTCAGTATAAACATCTGAAGGTTAGACCTGCTATGTACCTGCTCTCCGTCGAAATGGAGATGCCA
GATTGTTATCTTGGATCTGCTTTGGTGTAAGAACATCCGAAAGT
Found at i:71467764 original size:45 final size:45
Alignment explanation
Indices: 71467618--71467932 Score: 227
Period size: 44 Copynumber: 7.1 Consensus size: 45
71467608 CGAAAATTAG
* * * *
71467618 ATCTGCTATGTCTTCGATTTG-TTCCTTGTAAACACAGGGATGCCAA
1 ATCTGCTA--TCTTCGATCTGTTTCCCTATAAACACAGGGATGTCAA
* * * *
71467664 ATTTGCTATCTTC-AACT-TGTTCCCTATAAACACAGGGATGCCAT
1 ATCTGCTATCTTCGATCTGT-TTCCCTATAAACACAGGGATGTCAA
* *** * * * * * *
71467708 GT-TAAAATCTTTGATCTGTTTCGCTGTAAGCACAGGAATGTCAG
1 ATCTGCTATCTTCGATCTGTTTCCCTATAAACACAGGGATGTCAA
* *
71467752 ATCTGCTATCTTTGATCTG-TTCCCTATAAACACAGGGAT-ACTAA
1 ATCTGCTATCTTCGATCTGTTTCCCTATAAACACAGGGATGTC-AA
* * *
71467796 ATCTGCTATCTTCAATTTG-TTCCCTATAAACATAGGGATGTC--
1 ATCTGCTATCTTCGATCTGTTTCCCTATAAACACAGGGATGTCAA
** * * * *
71467838 ATGCTGAAATCTTCGATCTGTTTCACTGTAAGCACA-GGAGTGTCAG
1 AT-CTGCTATCTTCGATCTGTTTCCCTATAAACACAGGGA-TGTCAA
* *
71467884 ATCTGCTATCTTCAATCTGTTTCCTTATAAACACAGGGATGTCAA
1 ATCTGCTATCTTCGATCTGTTTCCCTATAAACACAGGGATGTCAA
71467929 ATCT
1 ATCT
71467933 TGTTTCTTTG
Statistics
Matches: 207, Mismatches: 49, Indels: 27
0.73 0.17 0.10
Matches are distributed among these distances:
42 2 0.01
43 25 0.12
44 118 0.57
45 50 0.24
46 12 0.06
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTGTTTCCCTATAAACACAGGGATGTCAA
Found at i:71467803 original size:132 final size:132
Alignment explanation
Indices: 71467616--71467932 Score: 445
Period size: 132 Copynumber: 2.4 Consensus size: 132
71467606 TCCGAAAATT
* * * *
71467616 AGATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAGGGATGCCAAATTTGCTATCTTCAACT
1 AGATCTGCTA--TCTTCGATCTGTTCCTTATAAACACAGGGATACCAAATCTGCTATCTTCAACT
* * *
71467681 TGTTCCCTATAAACACAGGGATGCCATGTTAAAATCTTTGATCTGTTTCGCTGTAAGCACAGGAA
64 TGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGTTTCACTGTAAGCACAGGAA
71467746 TGTC
129 TGTC
* * * *
71467750 AGATCTGCTATCTTTGATCTGTTCCCTATAAACACAGGGATACTAAATCTGCTATCTTCAATTTG
1 AGATCTGCTATCTTCGATCTGTTCCTTATAAACACAGGGATACCAAATCTGCTATCTTCAACTTG
* * * *
71467815 TTCCCTATAAACATAGGGATGTCATGCTGAAATCTTCGATCTGTTTCACTGTAAGCACAGGAGTG
66 TTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGTTTCACTGTAAGCACAGGAATG
71467880 TC
131 TC
* **
71467882 AGATCTGCTATCTTCAATCTGTTTCCTTATAAACACAGGGATGTCAAATCT
1 AGATCTGCTATCTTCGATCTG-TTCCTTATAAACACAGGGATACCAAATCT
71467933 TGTTTCTTTG
Statistics
Matches: 161, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
132 126 0.78
133 25 0.16
134 10 0.06
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.34
Consensus pattern (132 bp):
AGATCTGCTATCTTCGATCTGTTCCTTATAAACACAGGGATACCAAATCTGCTATCTTCAACTTG
TTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCGATCTGTTTCACTGTAAGCACAGGAATG
TC
Found at i:71471269 original size:19 final size:19
Alignment explanation
Indices: 71471220--71471295 Score: 107
Period size: 19 Copynumber: 3.8 Consensus size: 19
71471210 AAATTAAATC
* *
71471220 TCTAAGATTACAAGATCATA
1 TCTAAGATTGC-ATATCATA
71471240 TCTTCAAGATTGCATATCATA
1 TC-T-AAGATTGCATATCATA
71471261 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
71471280 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
71471296 CTTAAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
19 32 0.62
20 3 0.06
21 10 0.19
22 7 0.13
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:71471659 original size:16 final size:17
Alignment explanation
Indices: 71471633--71471664 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
71471623 GCTTAAGGGA
71471633 AAAACTATAATTTTTCC
1 AAAACTATAATTTTTCC
71471650 AAAA-TATAATTTTTC
1 AAAACTATAATTTTTC
71471665 AACTGATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (17 bp):
AAAACTATAATTTTTCC
Done.