Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 219 of 325
Found at i:71482347 original size:18 final size:20
Alignment explanation
Indices: 71482310--71482348 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
71482300 TATTTAATGT
71482310 TTCATATCTTATTATCATTA
1 TTCATATCTTATTATCATTA
71482330 TTCAT-TCTTATT-TCATTA
1 TTCATATCTTATTATCATTA
71482348 T
1 T
71482349 ACGTTATCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.37
19 7 0.37
20 5 0.26
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (20 bp):
TTCATATCTTATTATCATTA
Found at i:71486820 original size:69 final size:69
Alignment explanation
Indices: 71486705--71486842 Score: 215
Period size: 69 Copynumber: 2.0 Consensus size: 69
71486695 TTTCATTCAT
* *
71486705 TAGGTTTTTATCTCATAGGGCTTTTCCTAATAAGGTTTTAACGAGGCACATTATCTACCAATGGA
1 TAGGTTTTTATCTCACAGGGCTTTTCCTAATAAGGTTTTAACGAGGCACATTATCTACCAATAGA
71486770 CATC
66 CATC
* * *
71486774 TAGGTTTTTATC-CTACAGGGTTTTTCCTAATAAGGTTTTAATGAGGCACATTATCTACTAATAG
1 TAGGTTTTTATCTC-ACAGGGCTTTTCCTAATAAGGTTTTAACGAGGCACATTATCTACCAATAG
71486838 ACATC
65 ACATC
71486843 CAATGGGAAG
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
68 1 0.02
69 62 0.98
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (69 bp):
TAGGTTTTTATCTCACAGGGCTTTTCCTAATAAGGTTTTAACGAGGCACATTATCTACCAATAGA
CATC
Found at i:71489386 original size:14 final size:14
Alignment explanation
Indices: 71489367--71489395 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
71489357 CAATAAAAAG
71489367 TATCCACGTCAGCT
1 TATCCACGTCAGCT
71489381 TATCCACGTCAGCT
1 TATCCACGTCAGCT
71489395 T
1 T
71489396 CTTATTTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.34, G:0.14, T:0.31
Consensus pattern (14 bp):
TATCCACGTCAGCT
Found at i:71495481 original size:32 final size:30
Alignment explanation
Indices: 71495445--71495509 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
71495435 ATCTAAAAAT
*
71495445 AAAATTATAAAAACTTAAAATATATAAATTTA
1 AAAATTATAAAAA-TTAAAA-ATATAAAATTA
* **
71495477 AAAATTCTCGAAATTAAAAATATAAAATTA
1 AAAATTATAAAAATTAAAAATATAAAATTA
71495507 AAA
1 AAA
71495510 TATATGAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 13 0.45
31 6 0.21
32 10 0.34
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (30 bp):
AAAATTATAAAAATTAAAAATATAAAATTA
Found at i:71495511 original size:13 final size:14
Alignment explanation
Indices: 71495438--71495513 Score: 55
Period size: 16 Copynumber: 5.1 Consensus size: 14
71495428 AACAATTATC
* *
71495438 TAAAAATAAAATTA
1 TAAAATTAAAAATA
71495452 TAAAAACTTAAAATATA
1 T-AAAA-TTAAAA-ATA
* *
71495469 TAAATTTAAAAATTC
1 TAAAATTAAAAA-TA
*
71495484 TCGAAATTAAAAATA
1 T-AAAATTAAAAATA
71495499 TAAAATT-AAAATA
1 TAAAATTAAAAATA
71495512 TA
1 TA
71495514 TGAATATTGT
Statistics
Matches: 49, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
13 8 0.16
14 7 0.14
15 14 0.29
16 17 0.35
17 3 0.06
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (14 bp):
TAAAATTAAAAATA
Found at i:71496213 original size:21 final size:20
Alignment explanation
Indices: 71496196--71496232 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
71496186 GAATTTCTAG
71496196 TTTTAGAT-TTTATGTTTCT
1 TTTTAGATATTTATGTTTCT
*
71496215 TTTTATATATTTATGTTT
1 TTTTAGATATTTATGTTT
71496233 AACAGTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.19, C:0.03, G:0.08, T:0.70
Consensus pattern (20 bp):
TTTTAGATATTTATGTTTCT
Found at i:71496392 original size:22 final size:20
Alignment explanation
Indices: 71496352--71496406 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 20
71496342 ATAAATTATA
* *
71496352 ATAAAAATTATTTTTAAAAT
1 ATAAAAATTATCTTTAAAAG
71496372 ATAAAAATATAATCTTTAAAAG
1 ATAAAAAT-T-ATCTTTAAAAG
71496394 ATTAAAAACTTAT
1 A-TAAAAA-TTAT
71496407 TTTTCTCTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 8 0.28
21 1 0.03
22 12 0.41
23 7 0.24
24 1 0.03
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (20 bp):
ATAAAAATTATCTTTAAAAG
Found at i:71497173 original size:57 final size:57
Alignment explanation
Indices: 71497109--71497216 Score: 171
Period size: 57 Copynumber: 1.9 Consensus size: 57
71497099 ACATACACTA
* * * *
71497109 TTTTAACATTAATTCAAATTGTCCATGAAATAGCAAGAGATAGTCATGTTCCTCAGC
1 TTTTAACATTAACTCAAACTGTCCATGAAATAGCAAGAGATAATAATGTTCCTCAGC
*
71497166 TTTTAACATTAACTCAAACTGTCCATGAGATAGCAAGAGATAATAATGTTC
1 TTTTAACATTAACTCAAACTGTCCATGAAATAGCAAGAGATAATAATGTTC
71497217 GTTGGAACAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (57 bp):
TTTTAACATTAACTCAAACTGTCCATGAAATAGCAAGAGATAATAATGTTCCTCAGC
Found at i:71503534 original size:42 final size:42
Alignment explanation
Indices: 71503475--71503560 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
71503465 GATGGAGAAA
*
71503475 ACCTCATTTTCCTTGTGGAAAAGGTTAAAAACTCCTTATGCG
1 ACCTCATTTGCCTTGTGGAAAAGGTTAAAAACTCCTTATGCG
*
71503517 ACCTCATTTGCCTTGTGGAAAAGGTTAAAAACTCTTTATGCG
1 ACCTCATTTGCCTTGTGGAAAAGGTTAAAAACTCCTTATGCG
71503559 AC
1 AC
71503561 TAAATTTCTG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (42 bp):
ACCTCATTTGCCTTGTGGAAAAGGTTAAAAACTCCTTATGCG
Found at i:71504841 original size:34 final size:34
Alignment explanation
Indices: 71504798--71504865 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
71504788 AGAAATAATC
71504798 TTTTAGTTAAACTCTGTTTATTTGTTTCAATCAA
1 TTTTAGTTAAACTCTGTTTATTTGTTTCAATCAA
71504832 TTTTAGTTAAACTCTGTTTATTTGTTTCAATCAA
1 TTTTAGTTAAACTCTGTTTATTTGTTTCAATCAA
71504866 ACACTAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.26, C:0.12, G:0.09, T:0.53
Consensus pattern (34 bp):
TTTTAGTTAAACTCTGTTTATTTGTTTCAATCAA
Found at i:71506095 original size:20 final size:21
Alignment explanation
Indices: 71506070--71506108 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
71506060 TATTTTAGAT
*
71506070 ATTTAATTA-TTAATTTTTCA
1 ATTTAATTACTCAATTTTTCA
71506090 ATTTAATTACTCAATTTTT
1 ATTTAATTACTCAATTTTT
71506109 TGAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTTAATTACTCAATTTTTCA
Found at i:71508515 original size:25 final size:26
Alignment explanation
Indices: 71508487--71508538 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
71508477 AATAAATTTA
71508487 TATATTTA-TTATATAA-AAATAAAAT
1 TATATTTATTTATATAATAAA-AAAAT
71508512 TATATTTATTTATATAATAAAAAAAT
1 TATATTTATTTATATAATAAAAAAAT
71508538 T
1 T
71508539 TACATGTACT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 8 0.32
26 14 0.56
27 3 0.12
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
TATATTTATTTATATAATAAAAAAAT
Found at i:71508531 original size:29 final size:28
Alignment explanation
Indices: 71508480--71508540 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 28
71508470 TTATGGTAAT
71508480 AAATTTATATATTTATTATATAAAAATA
1 AAATTTATATATTTATTATATAAAAATA
71508508 AAA--T-TATATTTATTTATATAATAAA-A
1 AAATTTATATATTTA-TTATATAA-AAATA
71508534 AAATTTA
1 AAATTTA
71508541 CATGTACTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
25 8 0.29
26 13 0.46
27 3 0.11
28 4 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (28 bp):
AAATTTATATATTTATTATATAAAAATA
Found at i:71516527 original size:20 final size:20
Alignment explanation
Indices: 71516499--71516536 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
71516489 CAAGATTCGG
71516499 GCAAAA-TTTGTAAAGATTTA
1 GCAAAATTTTG-AAAGATTTA
*
71516519 GCAAGATTTTGAAAGATT
1 GCAAAATTTTGAAAGATT
71516537 ATTTAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.42, C:0.05, G:0.18, T:0.34
Consensus pattern (20 bp):
GCAAAATTTTGAAAGATTTA
Found at i:71526947 original size:13 final size:13
Alignment explanation
Indices: 71526929--71526963 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
71526919 GTTAAATTAG
71526929 CACACGGGTAGGA
1 CACACGGGTAGGA
*
71526942 CACACGGGCAGGA
1 CACACGGGTAGGA
71526955 CACACGGGT
1 CACACGGGT
71526964 GTGTGTCTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.29, C:0.29, G:0.37, T:0.06
Consensus pattern (13 bp):
CACACGGGTAGGA
Found at i:71530797 original size:44 final size:45
Alignment explanation
Indices: 71530703--71530933 Score: 238
Period size: 44 Copynumber: 5.2 Consensus size: 45
71530693 GATCTCTTTT
* * *
71530703 ACTGCAACTTCAGAGAGATAAGATTCACTATCTTCAGTTTGCTCC
1 ACTGCAACTTCAGAGAGATAAGACTCACTAACTTCAGTCTGCTCC
*
71530748 ACTGCAACTTCAGAGAGATAAGACTCA-TAACTTCAGTCTACTCC
1 ACTGCAACTTCAGAGAGATAAGACTCACTAACTTCAGTCTGCTCC
* * **
71530792 ACTGCAACTTCAGGGAGATAAGACTTACTAA-TTCAACCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGACTCACTAACTTCAGTCTGCTCC
* * * *
71530836 ACTGCAACTTCAGGGAGATAAGGTCTTCA--ATCTTCAGTCTGTTCC
1 ACTGCAACTTCAGAGAGATAA-GAC-TCACTAACTTCAGTCTGCTCC
* * ** ** *
71530881 ACTACAACTTCAGAGGGATAAGACTTGCT-ACTTCAACCTGCTTC
1 ACTGCAACTTCAGAGAGATAAGACTCACTAACTTCAGTCTGCTCC
71530925 ACTGCAACT
1 ACTGCAACT
71530934 GCTTCACTGT
Statistics
Matches: 153, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
43 1 0.01
44 91 0.59
45 59 0.39
46 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (45 bp):
ACTGCAACTTCAGAGAGATAAGACTCACTAACTTCAGTCTGCTCC
Found at i:71530804 original size:89 final size:89
Alignment explanation
Indices: 71530703--71530933 Score: 279
Period size: 89 Copynumber: 2.6 Consensus size: 89
71530693 GATCTCTTTT
* ***
71530703 ACTGCAACTTCAGAGAGATAAGA-TTCACTATCTTCAGTTTGCTCCACTGCAACTTCAGAGAGAT
1 ACTGCAACTTCAGAGAGATAAGACTT-ACTA-ATTCAACCTGCTCCACTGCAACTTCAGAGAGAT
71530767 AA-GAC-TCATAACTTCAGTCTACTCC
64 AAGGACTTCA-AACTTCAGTCTACTCC
* *
71530792 ACTGCAACTTCAGGGAGATAAGACTTACTAATTCAACCTGCTCCACTGCAACTTCAGGGAGATAA
1 ACTGCAACTTCAGAGAGATAAGACTTACTAATTCAACCTGCTCCACTGCAACTTCAGAGAGATAA
* * **
71530857 GGTCTTCAATCTTCAGTCTGTTCC
66 GGACTTCAAACTTCAGTCTACTCC
* * * * *
71530881 ACTACAACTTCAGAGGGATAAGACTTGCTACTTCAACCTGCTTCACTGCAACT
1 ACTGCAACTTCAGAGAGATAAGACTTACTAATTCAACCTGCTCCACTGCAACT
71530934 GCTTCACTGT
Statistics
Matches: 123, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
88 30 0.24
89 88 0.72
90 5 0.04
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (89 bp):
ACTGCAACTTCAGAGAGATAAGACTTACTAATTCAACCTGCTCCACTGCAACTTCAGAGAGATAA
GGACTTCAAACTTCAGTCTACTCC
Found at i:71530937 original size:14 final size:14
Alignment explanation
Indices: 71530918--71530947 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
71530908 CTACTTCAAC
71530918 CTGCTTCACTGCAA
1 CTGCTTCACTGCAA
*
71530932 CTGCTTCACTGTAA
1 CTGCTTCACTGCAA
71530946 CT
1 CT
71530948 TCAGGGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.33
Consensus pattern (14 bp):
CTGCTTCACTGCAA
Found at i:71531078 original size:45 final size:44
Alignment explanation
Indices: 71531018--71531142 Score: 153
Period size: 45 Copynumber: 2.8 Consensus size: 44
71531008 TTATTTATAG
* * *
71531018 CTTCAATCTGTTCCACTGCATCTTCAGGTAAATAAGA-TTAGCTA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGACTTA-CTA
* * *
71531062 TCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTACTA
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGACTTACTA
* *
71531107 CTTCAACCTACTCCACTGCAACTTCAGGGAAATAAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAG
71531143 GTATTCAATC
Statistics
Matches: 68, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
44 31 0.46
45 34 0.50
46 3 0.04
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.30
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGACTTACTA
Found at i:71531126 original size:44 final size:45
Alignment explanation
Indices: 71531029--71531142 Score: 142
Period size: 44 Copynumber: 2.6 Consensus size: 45
71531019 TTCAATCTGT
* * ** *
71531029 TCCACTGCATCTTCAGGTAAATAAGATTAGCTATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAAATAAGATTAGCTATCTTCAACCTAC
* *
71531074 TCCACTGCAACTTTAGGGAGATAAGACTTA-CTA-CTTCAACCTAC
1 TCCACTGCAACTTCAGGGAAATAAGA-TTAGCTATCTTCAACCTAC
71531118 TCCACTGCAACTTCAGGGAAATAAG
1 TCCACTGCAACTTCAGGGAAATAAG
71531143 GTATTCAATC
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
44 31 0.53
45 25 0.42
46 3 0.05
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (45 bp):
TCCACTGCAACTTCAGGGAAATAAGATTAGCTATCTTCAACCTAC
Found at i:71532552 original size:15 final size:15
Alignment explanation
Indices: 71532532--71532579 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
71532522 TTTATTCGAT
71532532 TTTTTTGATTGATTC
1 TTTTTTGATTGATTC
**
71532547 TTTTTTTTTTGA---
1 TTTTTTGATTGATTC
71532559 TTTTTTGATTGATTC
1 TTTTTTGATTGATTC
71532574 TTTTTT
1 TTTTTT
71532580 TTTAATTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
12 10 0.38
15 16 0.62
ACGTcount: A:0.10, C:0.04, G:0.10, T:0.75
Consensus pattern (15 bp):
TTTTTTGATTGATTC
Found at i:71532577 original size:26 final size:27
Alignment explanation
Indices: 71532532--71532590 Score: 102
Period size: 26 Copynumber: 2.2 Consensus size: 27
71532522 TTTATTCGAT
*
71532532 TTTTTTGATTGATTCTTTTTTTTTTGA
1 TTTTTTGATTGATTCTTTTTTTTTTAA
71532559 TTTTTTGATTGATTC-TTTTTTTTTAA
1 TTTTTTGATTGATTCTTTTTTTTTTAA
71532585 TTTTTT
1 TTTTTT
71532591 TAAGGTCTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 16 0.52
27 15 0.48
ACGTcount: A:0.12, C:0.03, G:0.08, T:0.76
Consensus pattern (27 bp):
TTTTTTGATTGATTCTTTTTTTTTTAA
Found at i:71532591 original size:27 final size:28
Alignment explanation
Indices: 71532530--71532591 Score: 101
Period size: 27 Copynumber: 2.3 Consensus size: 28
71532520 TCTTTATTCG
*
71532530 ATTTTTTTGATTGATTCTTTTTTTTTTG
1 ATTTTTTTGATTGATTCTTTTTTTTTTA
71532558 A-TTTTTTGATTGATTC-TTTTTTTTTA
1 ATTTTTTTGATTGATTCTTTTTTTTTTA
71532584 ATTTTTTT
1 ATTTTTTT
71532592 AAGGTCTCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 10 0.31
27 21 0.66
28 1 0.03
ACGTcount: A:0.13, C:0.03, G:0.08, T:0.76
Consensus pattern (28 bp):
ATTTTTTTGATTGATTCTTTTTTTTTTA
Found at i:71533466 original size:13 final size:13
Alignment explanation
Indices: 71533450--71533481 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
71533440 CTGTGAAGAA
71533450 ATGAATACGGTAC
1 ATGAATACGGTAC
71533463 ATGAATACGGTAC
1 ATGAATACGGTAC
71533476 ATGAAT
1 ATGAAT
71533482 CTTGTCTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.25
Consensus pattern (13 bp):
ATGAATACGGTAC
Found at i:71543539 original size:19 final size:20
Alignment explanation
Indices: 71543517--71543556 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
71543507 TTTTATATTA
71543517 ATATTAA-A-TAAATATAAAT
1 ATATTAATATTAAATA-AAAT
71543536 ATATTAATATTAAATAAAAT
1 ATATTAATATTAAATAAAAT
71543556 A
1 A
71543557 AAAATCCACC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 6 0.32
21 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATATTAATATTAAATAAAAT
Found at i:71543543 original size:25 final size:24
Alignment explanation
Indices: 71543510--71543558 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 24
71543500 TCCCACATTT
71543510 TATATTAATATTAAATAAATATAAA
1 TATATTAATATTAAATAAA-ATAAA
71543535 TATATTAATATTAAATAAAATAAA
1 TATATTAATATTAAATAAAATAAA
71543559 AATCCACCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (24 bp):
TATATTAATATTAAATAAAATAAA
Found at i:71544125 original size:43 final size:43
Alignment explanation
Indices: 71544023--71544144 Score: 120
Period size: 43 Copynumber: 2.9 Consensus size: 43
71544013 AAAAACGCCA
* * ** * *
71544023 CTAAAGAACATGACCTTTAG-GGCGTTACTGGTAAAAGTGTTG
1 CTAAAGAACATGATCTTTAGCGGCATTTTTGGGAAAAGTGCTG
*
71544065 CTAAAGAACATGATCTTTAGTGGCATTTTTGGGAAAAGTGCTG
1 CTAAAGAACATGATCTTTAGCGGCATTTTTGGGAAAAGTGCTG
* ** * * *
71544108 TTAAAGATTATGTTCTTTAGCGGCGTTTTTTGGAAAA
1 CTAAAGAACATGATCTTTAGCGGCATTTTTGGGAAAA
71544145 TGTCACTAAT
Statistics
Matches: 66, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
42 19 0.29
43 47 0.71
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (43 bp):
CTAAAGAACATGATCTTTAGCGGCATTTTTGGGAAAAGTGCTG
Found at i:71550082 original size:12 final size:12
Alignment explanation
Indices: 71550065--71550090 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
71550055 CTTTCTGCCT
71550065 TAACAAATAAAA
1 TAACAAATAAAA
71550077 TAACAAATAAAA
1 TAACAAATAAAA
71550089 TA
1 TA
71550091 TTTTAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.19
Consensus pattern (12 bp):
TAACAAATAAAA
Found at i:71550878 original size:76 final size:76
Alignment explanation
Indices: 71550766--71550935 Score: 231
Period size: 77 Copynumber: 2.2 Consensus size: 76
71550756 CGAGATTTCT
* *
71550766 AAAAAAA-TTAGGGATTTTGGGGTAGGGGAATTGATTT-GGGAAAAAAATT-GGGAAAAACAGAA
1 AAAAAAACTTAGGGATTTCGGGGGAGGGGAATTGATTTGGGGAAAAAAATTGGGGAAAAA-AGAA
71550828 AGGGGTCTGGG-
65 AGGGGTCTGGGA
* *
71550839 AAAGAAACTTAGGGATTTCGGGGAGAGGGAGAATTGATTTGGGGAAAGAAATTGGGGAAAAAAGA
1 AAAAAAACTTAGGGATTTCGGGG-GAGGG-GAATTGATTTGGGGAAAAAAATTGGGGAAAAAAGA
*
71550904 AAGGGGTTTGGGAA
64 AAGGGGTCTGGG-A
71550918 AAAAAAACTTAGGGATTT
1 AAAAAAACTTAGGGATTT
71550936 TGAGAAGAGG
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
73 6 0.07
74 14 0.17
75 4 0.05
76 10 0.12
77 25 0.30
78 8 0.10
79 17 0.20
ACGTcount: A:0.41, C:0.03, G:0.35, T:0.21
Consensus pattern (76 bp):
AAAAAAACTTAGGGATTTCGGGGGAGGGGAATTGATTTGGGGAAAAAAATTGGGGAAAAAAGAAA
GGGGTCTGGGA
Found at i:71550905 original size:77 final size:78
Alignment explanation
Indices: 71550766--71550975 Score: 252
Period size: 79 Copynumber: 2.7 Consensus size: 78
71550756 CGAGATTTCT
* *
71550766 AAAAAAA-TTAGGGATTTTGGGG-TAGGGGAATTGATTT-GGGAAAAAAATT-GGGAAAAACAGA
1 AAAAAAACTTAGGGATTTTGGGGAGAGGGGAATTGATTTGGGGAAAGAAATTGGGGAAAAACAGA
71550827 AAGGGGTCTGGG-
66 AAGGGGTCTGGGA
* *
71550839 AAAGAAACTTAGGGATTTCGGGGAGAGGGAGAATTGATTTGGGGAAAGAAATTGGGGAAAAA-AG
1 AAAAAAACTTAGGGATTTTGGGGAGAGGG-GAATTGATTTGGGGAAAGAAATTGGGGAAAAACAG
*
71550903 AAAGGGGTTTGGGAA
65 AAAGGGGTCTGGG-A
* * * * *
71550918 AAAAAAACTTAGGGATTTTGAGAAGAGGGGGAATTAATCTGGGGAAAAGAATTTGGGG
1 AAAAAAACTTAGGGATTTTGGGGAGA-GGGGAATTGATTTGGGG-AAAGAAATTGGGG
71550976 TTTTGGGGCT
Statistics
Matches: 116, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
73 6 0.05
74 14 0.12
75 4 0.03
76 10 0.09
77 25 0.22
78 8 0.07
79 34 0.29
80 15 0.13
ACGTcount: A:0.40, C:0.03, G:0.37, T:0.21
Consensus pattern (78 bp):
AAAAAAACTTAGGGATTTTGGGGAGAGGGGAATTGATTTGGGGAAAGAAATTGGGGAAAAACAGA
AAGGGGTCTGGGA
Found at i:71565259 original size:13 final size:13
Alignment explanation
Indices: 71565241--71565268 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
71565231 GAACACGGGT
71565241 GTGTTCCATGGCC
1 GTGTTCCATGGCC
71565254 GTGTTCCATGGCC
1 GTGTTCCATGGCC
71565267 GT
1 GT
71565269 TTACCCCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.29, G:0.32, T:0.32
Consensus pattern (13 bp):
GTGTTCCATGGCC
Found at i:71565524 original size:20 final size:20
Alignment explanation
Indices: 71565483--71565526 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
71565473 AATAATCTTT
* *
71565483 ATTTTTCTCATTTTACTTTC
1 ATTTTGCTCATTTTACTATC
71565503 ATTTTGCTCATTATT-CTATC
1 ATTTTGCTCATT-TTACTATC
71565523 ATTT
1 ATTT
71565527 AATTTGTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.18, C:0.18, G:0.02, T:0.61
Consensus pattern (20 bp):
ATTTTGCTCATTTTACTATC
Found at i:71583258 original size:27 final size:28
Alignment explanation
Indices: 71583199--71583268 Score: 88
Period size: 27 Copynumber: 2.5 Consensus size: 28
71583189 GTGACAGAGT
* * *
71583199 CACCAGATACAGATATTTTGTGGCAGTGA
1 CACCAGA-ACAGATATTATGTAGCAGGGA
*
71583228 CACCAGAACAGATA-TATGTAGCAGGGC
1 CACCAGAACAGATATTATGTAGCAGGGA
71583255 CACCAGAACAGATA
1 CACCAGAACAGATA
71583269 ATTTATGGCA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 23 0.62
28 7 0.19
29 7 0.19
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (28 bp):
CACCAGAACAGATATTATGTAGCAGGGA
Found at i:71583441 original size:28 final size:28
Alignment explanation
Indices: 71583397--71583485 Score: 144
Period size: 28 Copynumber: 3.2 Consensus size: 28
71583387 TTAACCCTAA
*
71583397 GGGTATAAAT-GTCATTTTGCATACATAG
1 GGGTAT-AATGGTAATTTTGCATACATAG
*
71583425 GGGTATAATGGTAATTTTCCATACATAG
1 GGGTATAATGGTAATTTTGCATACATAG
71583453 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAATGGTAATTTTGCATACATAG
71583481 GGGTA
1 GGGTA
71583486 ATCTAGTACA
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 3 0.05
28 54 0.95
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.35
Consensus pattern (28 bp):
GGGTATAATGGTAATTTTGCATACATAG
Found at i:71586873 original size:232 final size:232
Alignment explanation
Indices: 71586462--71586920 Score: 855
Period size: 232 Copynumber: 2.0 Consensus size: 232
71586452 CTTATTCCCT
71586462 CCAGGATGCATGGCACAAAGTCCCCTATGAGCTTCCTTCAAAATTGACTGTCTCGAGTCAGAGTC
1 CCAGGATGCATGGCACAAAGTCCCCTATGAGCTTCCTTCAAAATTGACTGTCTCGAGTCAGAGTC
* * *
71586527 CTTCGGTACACAAATTCTACCTCGAAAACACAGAACCCCATCATTATTTAACCCAAACTCAGAAG
66 CTTCGGAACACAAATTCTACCTCGAAAACACAGAACCCCATCATCATTTAACCCAAACTCAAAAG
71586592 TTTCCCCTTCCTTAACTTGTTGAAAACGAGGGACCAAAGACTCATCTTTCAACTGCTTTTCCTTA
131 TTTCCCCTTCCTTAACTTGTTGAAAACGAGGGACCAAAGACTCATCTTTCAACTGCTTTTCCTTA
71586657 ATCTGATCCACCCAGGTTGGCCTTACTTGCAAAACAG
196 ATCTGATCCACCCAGGTTGGCCTTACTTGCAAAACAG
71586694 CCAGGATGCATGGCACAAAGTCCCCTATGAGCTTCCTTCAAAATTGACTGTCTCGAGTCAGAGTC
1 CCAGGATGCATGGCACAAAGTCCCCTATGAGCTTCCTTCAAAATTGACTGTCTCGAGTCAGAGTC
*
71586759 CTTCGGAACAGAAATTCTACCTCGAAAACACAGAACCCCATCATCATTTAACCCAAACTCAAAAG
66 CTTCGGAACACAAATTCTACCTCGAAAACACAGAACCCCATCATCATTTAACCCAAACTCAAAAG
* * *
71586824 TTTCCCCTTCCTTAACTTGTTTAAAACGAGGGACCAAATACTTATCTTTCAACTGCTTTTCCTTA
131 TTTCCCCTTCCTTAACTTGTTGAAAACGAGGGACCAAAGACTCATCTTTCAACTGCTTTTCCTTA
71586889 ATCTGATCCACCCAGGTTGGCCTTACTTGCAA
196 ATCTGATCCACCCAGGTTGGCCTTACTTGCAA
71586921 TTCAGCCAAC
Statistics
Matches: 220, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
232 220 1.00
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (232 bp):
CCAGGATGCATGGCACAAAGTCCCCTATGAGCTTCCTTCAAAATTGACTGTCTCGAGTCAGAGTC
CTTCGGAACACAAATTCTACCTCGAAAACACAGAACCCCATCATCATTTAACCCAAACTCAAAAG
TTTCCCCTTCCTTAACTTGTTGAAAACGAGGGACCAAAGACTCATCTTTCAACTGCTTTTCCTTA
ATCTGATCCACCCAGGTTGGCCTTACTTGCAAAACAG
Found at i:71591383 original size:55 final size:56
Alignment explanation
Indices: 71591318--71591432 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
71591308 AGCATGGCTG
* *
71591318 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
71591374 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
71591429 CCAG
1 CCAG
71591433 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:71591395 original size:27 final size:27
Alignment explanation
Indices: 71591343--71591432 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
71591333 GTGACAGAGT
71591343 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
71591372 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
71591399 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
71591427 CACCAG
1 CACCAG
71591433 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:71591601 original size:26 final size:27
Alignment explanation
Indices: 71591538--71591601 Score: 94
Period size: 28 Copynumber: 2.4 Consensus size: 27
71591528 AAATTAACCC
*
71591538 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATA-A
*
71591566 TAGGGGTATAATGGTAATTTTGCAT-A
1 TAGGGGTATAAAGGTAATTTTGCATAA
71591592 TAGGGGTATA
1 TAGGGGTATA
71591602 TACATACATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 11 0.32
28 23 0.68
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.34
Consensus pattern (27 bp):
TAGGGGTATAAAGGTAATTTTGCATAA
Found at i:71599792 original size:56 final size:55
Alignment explanation
Indices: 71599719--71599833 Score: 144
Period size: 55 Copynumber: 2.1 Consensus size: 55
71599709 AGCATGGCTG
* * *
71599719 CCAGATACAGAAAATGTGATAGAGTCACCAGATACAGATATTTTGTGGCAGTA-CCA
1 CCAGATACAGAAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* *
71599775 CCAGA-ACAGATATATGTGGCAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGA-AAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
71599830 CCAG
1 CCAG
71599834 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 2 0.04
55 28 0.54
56 22 0.42
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (55 bp):
CCAGATACAGAAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:71599796 original size:27 final size:28
Alignment explanation
Indices: 71599744--71599833 Score: 123
Period size: 28 Copynumber: 3.2 Consensus size: 28
71599734 GTGATAGAGT
71599744 CACCAGATACAGATATTTTGTGGCAGTA-C
1 CACCAGA-ACAGATA-TTTGTGGCAGTAGC
*
71599773 CACCAGAACAGATATATGTGGCAG-AGC
1 CACCAGAACAGATATTTGTGGCAGTAGC
71599800 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGTAGC
71599828 CACCAG
1 CACCAG
71599834 GACGCTTCCT
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
26 1 0.02
27 23 0.41
28 25 0.45
29 7 0.12
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATATTTGTGGCAGTAGC
Found at i:71599986 original size:28 final size:28
Alignment explanation
Indices: 71599939--71600003 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
71599929 GAATTAACCC
*
71599939 TAGGGGTATACAGGTCATTTTGCATACA
1 TAGGGGTATACAGGTAATTTTGCATACA
71599967 TAGGGGTATA-ATGGTAATTTTGCATACA
1 TAGGGGTATACA-GGTAATTTTGCATACA
71599995 TAGGGGTAT
1 TAGGGGTAT
71600004 TCTAGTACAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.29, C:0.09, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATACAGGTAATTTTGCATACA
Found at i:71619912 original size:38 final size:39
Alignment explanation
Indices: 71619870--71619963 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 39
71619860 CCATCTCCGA
* * * *
71619870 CCAACCCAACACACCA-TGTGGGGATAGAATCGACCCAC
1 CCAACCCTACACACCAGTATAGGGATAGAATCAACCCAC
* *
71619908 CCAACCCTACACACCAAGTATAGGGATATAATCAACCCAT
1 CCAACCCTACACACC-AGTATAGGGATAGAATCAACCCAC
71619948 CCAACCCTACACACCA
1 CCAACCCTACACACCA
71619964 AAAGGTACCG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
38 14 0.29
39 2 0.04
40 32 0.67
ACGTcount: A:0.37, C:0.38, G:0.12, T:0.13
Consensus pattern (39 bp):
CCAACCCTACACACCAGTATAGGGATAGAATCAACCCAC
Found at i:71621235 original size:36 final size:36
Alignment explanation
Indices: 71621194--71621267 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
71621184 CCAACTGACC
71621194 TCAAGTCAGACTTTATTCAATAAAAACAAAAAATTA
1 TCAAGTCAGACTTTATTCAATAAAAACAAAAAATTA
71621230 TCAAGTCAGACTTTATTCAATAAAAACAAAAAATTA
1 TCAAGTCAGACTTTATTCAATAAAAACAAAAAATTA
71621266 TC
1 TC
71621268 CTAAGTTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.51, C:0.15, G:0.05, T:0.28
Consensus pattern (36 bp):
TCAAGTCAGACTTTATTCAATAAAAACAAAAAATTA
Found at i:71625267 original size:27 final size:29
Alignment explanation
Indices: 71625205--71625281 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 29
71625195 ATAAGGTGAT
*
71625205 TTGGGCTTAATGGGCCATATGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATATGAA
*
71625234 TTTGGCCTAATGGGCCATATG-A-ATGAGA
1 TTGGGCCTAATGGGCCATATGAATATGA-A
71625262 -TGGGCC-AAGTGGGCCATATG
1 TTGGGCCTAA-TGGGCCATATG
71625282 CATGTATGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
26 2 0.05
27 20 0.47
28 2 0.05
29 19 0.44
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATATGAA
Found at i:71637223 original size:23 final size:23
Alignment explanation
Indices: 71637205--71637259 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
71637195 TTAGCTCGTC
71637205 AGAGCTTACCATTTTAGCTCAAT
1 AGAGCTTACCATTTTAGCTCAAT
71637228 AGAGCTTACCATTTTAGCTCAAT
1 AGAGCTTACCATTTTAGCTCAAT
*
71637251 AAAGCTTAC
1 AGAGCTTAC
71637260 TGTCCATCAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.33
Consensus pattern (23 bp):
AGAGCTTACCATTTTAGCTCAAT
Found at i:71637475 original size:19 final size:20
Alignment explanation
Indices: 71637431--71637476 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
71637421 AAAAGCTATG
* *
71637431 TGTTTATACGGATGAGTTAC
1 TGTTTATACGAATGAATTAC
*
71637451 TG-TTAT-CGAATGAATTAT
1 TGTTTATACGAATGAATTAC
71637469 TGTTTATA
1 TGTTTATA
71637477 TGATTGAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
18 11 0.52
19 8 0.38
20 2 0.10
ACGTcount: A:0.28, C:0.07, G:0.20, T:0.46
Consensus pattern (20 bp):
TGTTTATACGAATGAATTAC
Found at i:71649305 original size:37 final size:37
Alignment explanation
Indices: 71649264--71649345 Score: 146
Period size: 37 Copynumber: 2.2 Consensus size: 37
71649254 CAATCTATCA
71649264 TCAACCAATAAATCAAAATCTAACTTAATATGATTTC
1 TCAACCAATAAATCAAAATCTAACTTAATATGATTTC
*
71649301 TCAACCAATAAATCACAATCTAACTTAATATGATTTC
1 TCAACCAATAAATCAAAATCTAACTTAATATGATTTC
*
71649338 TCAGCCAA
1 TCAACCAA
71649346 AAAACCATAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.44, C:0.22, G:0.04, T:0.30
Consensus pattern (37 bp):
TCAACCAATAAATCAAAATCTAACTTAATATGATTTC
Found at i:71650057 original size:50 final size:49
Alignment explanation
Indices: 71649943--71650124 Score: 171
Period size: 50 Copynumber: 3.7 Consensus size: 49
71649933 ATAAGGTATA
* *
71649943 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATTG
1 ATGCTGATGCCATGTCCTAGACATGGTCTTACACTGACTATCGAAATTG
* * * *
71649992 AGGCTGACGCCATGTCCTAGACATGGTCTTGCACT-AGCTCTC-ACATATCT-
1 ATGCTGATGCCATGTCCTAGACATGGTCTTACACTGA-CTATCGA-A-AT-TG
* *
71650042 ATGCTGATGCCATGTCCTAGACATGGTCTTACACTGAC-ACCTCTATA-TG
1 ATGCTGATGCCATGTCCTAGACATGGTCTTACACTGACTA--TCGAAATTG
*
71650091 -TG-TCGATGCCATGTCCGAGACATGGTCTTACACT
1 ATGCT-GATGCCATGTCCTAGACATGGTCTTACACT
71650125 TACACATCTC
Statistics
Matches: 111, Mismatches: 12, Indels: 21
0.77 0.08 0.15
Matches are distributed among these distances:
47 1 0.01
48 34 0.31
49 35 0.32
50 36 0.32
51 4 0.04
52 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
ATGCTGATGCCATGTCCTAGACATGGTCTTACACTGACTATCGAAATTG
Found at i:71650117 original size:48 final size:47
Alignment explanation
Indices: 71649947--71650169 Score: 163
Period size: 50 Copynumber: 4.7 Consensus size: 47
71649937 GGTATAATGC
* * *
71649947 CGATGCCATGTCCCAGACATGGTCTTACACTGACTA--TCGAAATTGAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACCTC-ATA-TGTGT
* * * * * * *
71649995 CTGACGCCATGTCCTAGACATGGTCTTGCACT-AGCTCTCACATATCTAT
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-CTCATATGTGT
*
71650044 GCTGATGCCATGTCCTAGACATGGTCTTACACTGACACCTCTATATGTGT
1 -C-GATGCCATGTCCCAGACATGGTCTTACACTGACACCTC-ATATGTGT
* * * * *
71650094 CGATGCCATGTCCGAGACATGGTCTTACACTTACACATC-T-CGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCATATGT-GT
71650140 CGATG-CATGTCCCAGACAT-GTCTTACACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
71650170 GCTTACATCT
Statistics
Matches: 143, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
44 10 0.07
45 15 0.10
46 7 0.05
48 37 0.26
49 32 0.22
50 40 0.28
51 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACACCTCATATGTGT
Found at i:71650284 original size:48 final size:48
Alignment explanation
Indices: 71649945--71650300 Score: 192
Period size: 46 Copynumber: 7.5 Consensus size: 48
71649935 AAGGTATAAT
* * * *
71649945 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGA-AATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CCCATAA-TGTG
* * * * * * *
71649994 GCTGACGCCATGTCCTAGACATGGTCTTGCACTAGCTCTCACAT-ATCTAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-C-CATAATGT-G
* * * *
71650044 GCTGATGCCATGTCCTAGACATGGTCTTACACTGACACCTC-TATATGT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCC-CATA-ATGTG
* * * * *
71650092 GTCGATGCCATGTCCGAGACATGGTCTTACACT---TACACAT-CTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-CCCATAAT-GTG
** * *
71650138 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-CTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAAT-GTG
* *
71650184 GCCAATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTC-TCAAAT-T-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-C--CAT--AATGTG
*
71650232 --CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCCCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAATGTG
*
71650278 GCCGATG-CATGTCCCAGTCATGG
1 GCCGATGCCATGTCCCAGACATGG
71650301 CATGAATATC
Statistics
Matches: 243, Mismatches: 38, Indels: 54
0.73 0.11 0.16
Matches are distributed among these distances:
44 14 0.06
45 18 0.07
46 54 0.22
47 31 0.13
48 51 0.21
49 36 0.15
50 38 0.16
51 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCCCATAATGTG
Found at i:71650286 original size:94 final size:95
Alignment explanation
Indices: 71649946--71650300 Score: 284
Period size: 94 Copynumber: 3.7 Consensus size: 95
71649936 AGGTATAATG
* * * * *
71649946 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGA-AATTGAGGCTGACGCCATGTCCT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACT-CCCATAA-TGAGGCCGATGCCATGTCCC
* *
71650010 AGACATGGTCTTGCACTAGCTCTCACATATCTAT
64 AGACATGGTCTTACACTAGCTCT--CATCTCTAT
* * * * *
71650044 GCTGATGCCATGTCCTAGACATGGTCTTACACTGACACCTC-TATATG-TGTCGATGCCATGTCC
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCC-CATA-ATGAGGCCGATGCCATGTCC
* * *
71650107 GAGACATGGTCTTACACT---TACACATCTCGTAG
63 CAGACATGGTCTTACACTAGCT-CTCATCTC-TAT
* ** * *
71650139 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-CTCGAGGCCAATG-CATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCATAAT-GAGGCCGATGCCATGTCCCA
* *
71650200 GACAT-GTCTTACACTAGCTCTCGTCTCAAAT
65 GACATGGTCTTACACTAGCTCTCATCTC-TAT
* * * *
71650231 TCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCCCATAATGTGGCCGATG-CATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCATAATGAGGCCGATGCCATGTCCCAG
*
71650295 TCATGG
66 ACATGG
71650301 CATGAATATC
Statistics
Matches: 204, Mismatches: 37, Indels: 34
0.74 0.13 0.12
Matches are distributed among these distances:
90 11 0.05
91 15 0.07
92 30 0.15
93 28 0.14
94 48 0.24
95 5 0.02
96 1 0.00
98 29 0.14
99 36 0.18
100 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (95 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCCCATAATGAGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCTCTCATCTCTAT
Found at i:71651552 original size:21 final size:20
Alignment explanation
Indices: 71651524--71651562 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
71651514 CAATACTTAC
71651524 AAAGAAAG-AAAACTAAAAAA
1 AAAGAAAGCAAAA-TAAAAAA
71651544 AAAGTAAAGCAAAATAAAA
1 AAAG-AAAGCAAAATAAAA
71651563 TAAATCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 9 0.53
22 4 0.24
ACGTcount: A:0.77, C:0.05, G:0.10, T:0.08
Consensus pattern (20 bp):
AAAGAAAGCAAAATAAAAAA
Found at i:71652199 original size:16 final size:17
Alignment explanation
Indices: 71652168--71652205 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
71652158 ATACTTTTCA
71652168 CATACATTTAATCAATC
1 CATACATTTAATCAATC
71652185 CATACATTT-ATCAATC
1 CATACATTTAATCAATC
*
71652201 AATAC
1 CATAC
71652206 TAATCAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.34
Consensus pattern (17 bp):
CATACATTTAATCAATC
Found at i:71652983 original size:30 final size:30
Alignment explanation
Indices: 71652949--71653009 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
71652939 AATCATTTAC
71652949 AAATATGCATTAATATGCTCAATTCCACAA
1 AAATATGCATTAATATGCTCAATTCCACAA
71652979 AAATATGCATTAATATGCTCAATTCCACAA
1 AAATATGCATTAATATGCTCAATTCCACAA
71653009 A
1 A
71653010 TATACCAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.30
Consensus pattern (30 bp):
AAATATGCATTAATATGCTCAATTCCACAA
Found at i:71656417 original size:48 final size:48
Alignment explanation
Indices: 71656357--71656799 Score: 760
Period size: 48 Copynumber: 9.1 Consensus size: 48
71656347 AAATATATAT
* *
71656357 ATATATATGAGATATGTATATGTGGTAAAGCCGTATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
71656405 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA
* *
71656454 TATATATATGAGATATGTATGTGTGGTAAAGCCGAATGGCTAATGTGAAA
1 -ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA
*
71656504 TATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 -ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
71656553 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
71656601 ATATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
71656649 ATATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
71656697 ATATGTATGAGATAAGTATATGTGGTAAAGCTGAATGGCTAATGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
71656745 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
71656793 ATATGTA
1 ATATGTA
71656800 GGCGATGTGT
Statistics
Matches: 382, Mismatches: 11, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
48 285 0.75
49 4 0.01
50 93 0.24
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:71656727 original size:144 final size:146
Alignment explanation
Indices: 71656303--71656796 Score: 821
Period size: 144 Copynumber: 3.3 Consensus size: 146
71656293 GCGGAAATTG
71656303 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATATATGAG
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG----A-A-ATATATATATGAG
*
71656368 ATATGTATATGTGGTAAAGCCGTATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
60 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
71656433 AGCCGAATGGCTAATGTGAAATAT
125 AGCCGAATGGCTAATGTG-AA-AT
* *
71656457 ATATATGAGATATGTATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
71656522 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
71656587 ATGGCTAATGTGAAAT
131 ATGGCTAATGTGAAAT
* * *
71656603 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATAAGT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
* *
71656666 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCTGA
66 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
71656731 ATGGCTAATGTGAAAT
131 ATGGCTAATGTGAAAT
*
71656747 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
71656797 GTAGGCGATG
Statistics
Matches: 326, Mismatches: 12, Indels: 12
0.93 0.03 0.03
Matches are distributed among these distances:
144 136 0.42
145 4 0.01
146 45 0.14
147 2 0.01
148 95 0.29
149 1 0.00
150 1 0.00
154 42 0.13
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (146 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAAT
Found at i:71657128 original size:37 final size:37
Alignment explanation
Indices: 71656951--71657127 Score: 275
Period size: 37 Copynumber: 4.8 Consensus size: 37
71656941 TATATTTCGA
* *
71656951 GTAAGACCCGATGACTACATGTGGAAATATAT-TCCGG
1 GTAAGACCCGATGACTACGTGTGGAGAT-TATGTCCGG
71656988 GTAAGACCCGATGACTACGTGTGGAGATTATGTCCGG
1 GTAAGACCCGATGACTACGTGTGGAGATTATGTCCGG
71657025 GTAAGACCCGATGACTACGTGTGGAGATTATGTCCGG
1 GTAAGACCCGATGACTACGTGTGGAGATTATGTCCGG
* *
71657062 GTAAGACCCGATGACTACGTATGGAGATTTTGTCCGG
1 GTAAGACCCGATGACTACGTGTGGAGATTATGTCCGG
* **
71657099 GTAAGACCCGATAACTTTGTGTGGAGATT
1 GTAAGACCCGATGACTACGTGTGGAGATT
71657128 TCATCTGAGC
Statistics
Matches: 131, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
36 3 0.02
37 128 0.98
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (37 bp):
GTAAGACCCGATGACTACGTGTGGAGATTATGTCCGG
Found at i:71657974 original size:28 final size:29
Alignment explanation
Indices: 71657941--71657996 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
71657931 TCTTCAAAGT
71657941 ACTGATAT-CATGGCCCAAAGCCAAATCA
1 ACTGATATGCATGGCCCAAAGCCAAATCA
**
71657969 ACTGATATGCATGGCCCGTAGCCAAATC
1 ACTGATATGCATGGCCCAAAGCCAAATC
71657997 GGTATAACTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 8 0.32
29 17 0.68
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.20
Consensus pattern (29 bp):
ACTGATATGCATGGCCCAAAGCCAAATCA
Found at i:71658653 original size:20 final size:21
Alignment explanation
Indices: 71658613--71658654 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
71658603 AAACTTATAT
*
71658613 ATCTATCAACAAGCATTCAAA
1 ATCTATCAACAAACATTCAAA
*
71658634 ATCTATCAAGAAAC-TTCAAA
1 ATCTATCAACAAACATTCAAA
71658654 A
1 A
71658655 CTCATACATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.50, C:0.21, G:0.05, T:0.24
Consensus pattern (21 bp):
ATCTATCAACAAACATTCAAA
Found at i:71677112 original size:24 final size:22
Alignment explanation
Indices: 71677074--71677139 Score: 62
Period size: 22 Copynumber: 2.9 Consensus size: 22
71677064 TTTAATAACC
*
71677074 TAGGGTTTCGTATGTAATATCAGTT
1 TAGGG-TTCGCATGTAATATCA--T
*
71677099 TAGGGTTCGCATGTAA-GTCAT
1 TAGGGTTCGCATGTAATATCAT
*
71677120 TAGGGGTTCACATGTAATAT
1 TA-GGGTTCGCATGTAATAT
71677140 TCTAACTCGC
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 3 0.09
22 13 0.37
23 4 0.11
24 10 0.29
25 5 0.14
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.38
Consensus pattern (22 bp):
TAGGGTTCGCATGTAATATCAT
Found at i:71677320 original size:17 final size:17
Alignment explanation
Indices: 71677300--71677348 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
71677290 CCAAGGGTGT
*
71677300 TCGCGTACAAAAGGGGC
1 TCGCATACAAAAGGGGC
* *
71677317 TCGCATAC-AAGGGGGT
1 TCGCATACAAAAGGGGC
71677333 TCGCATACAAAGAGGG
1 TCGCATACAAA-AGGG
71677349 TTCACATGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 14 0.54
17 9 0.35
18 3 0.12
ACGTcount: A:0.31, C:0.20, G:0.35, T:0.14
Consensus pattern (17 bp):
TCGCATACAAAAGGGGC
Found at i:71677335 original size:33 final size:34
Alignment explanation
Indices: 71677276--71677348 Score: 94
Period size: 33 Copynumber: 2.1 Consensus size: 34
71677266 AGCTCACTAT
* * *
71677276 AAGGGGTTCACATACCAAGGGTGTTCGCGTACAA
1 AAGGGGCTCACATACCAAGGGGGTTCGCATACAA
*
71677310 AAGGGGCTCGCATA-CAAGGGGGTTCGCATACAA
1 AAGGGGCTCACATACCAAGGGGGTTCGCATACAA
71677343 AGAGGG
1 A-AGGG
71677349 TTCACATGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 18 0.53
34 16 0.47
ACGTcount: A:0.30, C:0.19, G:0.34, T:0.16
Consensus pattern (34 bp):
AAGGGGCTCACATACCAAGGGGGTTCGCATACAA
Found at i:71677336 original size:16 final size:16
Alignment explanation
Indices: 71677278--71677342 Score: 67
Period size: 17 Copynumber: 3.9 Consensus size: 16
71677268 CTCACTATAA
*
71677278 GGGGTTCACATACCAAG
1 GGGGTTCGCATA-CAAG
* * *
71677295 GGTGTTCGCGTACAAAA
1 GGGGTTCGCATAC-AAG
*
71677312 GGGGCTCGCATACAAG
1 GGGGTTCGCATACAAG
71677328 GGGGTTCGCATACAA
1 GGGGTTCGCATACAA
71677343 AGAGGGTTCA
Statistics
Matches: 38, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
16 17 0.45
17 21 0.55
ACGTcount: A:0.28, C:0.22, G:0.32, T:0.18
Consensus pattern (16 bp):
GGGGTTCGCATACAAG
Found at i:71677351 original size:17 final size:17
Alignment explanation
Indices: 71677279--71677351 Score: 62
Period size: 17 Copynumber: 4.4 Consensus size: 17
71677269 TCACTATAAG
* *
71677279 GGGTTCACATACCAAG-
1 GGGTTCGCATACAAAGA
*
71677295 GGTGTTCGCGTACAAA-A
1 GG-GTTCGCATACAAAGA
* *
71677312 GGGGCTCGCATAC-AAGG
1 -GGGTTCGCATACAAAGA
71677329 GGGTTCGCATACAAAGA
1 GGGTTCGCATACAAAGA
71677346 GGGTTC
1 GGGTTC
71677352 ACATGTATAG
Statistics
Matches: 44, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
16 15 0.34
17 27 0.61
18 2 0.05
ACGTcount: A:0.27, C:0.21, G:0.33, T:0.19
Consensus pattern (17 bp):
GGGTTCGCATACAAAGA
Found at i:71678950 original size:31 final size:31
Alignment explanation
Indices: 71678907--71678972 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
71678897 CTTTTTACTA
* * * *
71678907 AATTTAACCATCAATCTTTTAAAAAGAGTTG
1 AATTTAACCATCAACCTATCAAAAAGAGTAG
71678938 AATTTGAA-CATCAACCTATCAAAAAGAGTAG
1 AATTT-AACCATCAACCTATCAAAAAGAGTAG
71678969 AATT
1 AATT
71678973 GTTACTTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 28 0.93
32 2 0.07
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (31 bp):
AATTTAACCATCAACCTATCAAAAAGAGTAG
Found at i:71687723 original size:33 final size:33
Alignment explanation
Indices: 71687681--71687748 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
71687671 TTACTATTTA
*
71687681 GGTTTAGGGATTTTTTTAGATGATTTTTTGTTT
1 GGTTTAGGGACTTTTTTAGATGATTTTTTGTTT
71687714 GGTTTAGGGACTTTTTTAGATGATTTTTTGTTT
1 GGTTTAGGGACTTTTTTAGATGATTTTTTGTTT
71687747 GG
1 GG
71687749 AGATAAAGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.15, C:0.01, G:0.26, T:0.57
Consensus pattern (33 bp):
GGTTTAGGGACTTTTTTAGATGATTTTTTGTTT
Found at i:71688016 original size:18 final size:18
Alignment explanation
Indices: 71687993--71688029 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
71687983 TATAATTTGG
* *
71687993 TATTCGATTTATTTGAAT
1 TATTCGAGTTATTCGAAT
71688011 TATTCGAGTTATTCGAAT
1 TATTCGAGTTATTCGAAT
71688029 T
1 T
71688030 CAAAAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.08, G:0.14, T:0.51
Consensus pattern (18 bp):
TATTCGAGTTATTCGAAT
Found at i:71688070 original size:23 final size:24
Alignment explanation
Indices: 71688021--71688071 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 24
71688011 TATTCGAGTT
* ***
71688021 ATTCGAATTCAAAAATTAAACTCA
1 ATTCGAACTCAAAAATTAAAAAAA
71688045 ATTCGAACTC-AAAATTAAAAAAA
1 ATTCGAACTCAAAAATTAAAAAAA
71688068 ATTC
1 ATTC
71688072 AAGTTGACTC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.53, C:0.16, G:0.04, T:0.27
Consensus pattern (24 bp):
ATTCGAACTCAAAAATTAAAAAAA
Found at i:71693658 original size:23 final size:23
Alignment explanation
Indices: 71693632--71693699 Score: 95
Period size: 22 Copynumber: 2.9 Consensus size: 23
71693622 GTTTTTAGGG
71693632 TTTTTAGGGTTAGGGTTTTTATA
1 TTTTTAGGGTTAGGGTTTTTATA
71693655 -TTTTAGGGTTAGGGTTTTT-TA
1 TTTTTAGGGTTAGGGTTTTTATA
71693676 TATTTTAGGGTTTTAGGGTTTTTA
1 T-TTTTAGGG--TTAGGGTTTTTA
71693700 GAGTTTATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
21 2 0.05
22 19 0.47
23 8 0.20
25 11 0.28
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.57
Consensus pattern (23 bp):
TTTTTAGGGTTAGGGTTTTTATA
Found at i:71693661 original size:22 final size:22
Alignment explanation
Indices: 71693633--71693699 Score: 107
Period size: 23 Copynumber: 2.9 Consensus size: 22
71693623 TTTTTAGGGT
71693633 TTTTAGGGTTAGGGTTTTTATA
1 TTTTAGGGTTAGGGTTTTTATA
71693655 TTTTAGGGTTAGGGTTTTTTATA
1 TTTTAGGGTTAGGG-TTTTTATA
71693678 TTTTAGGGTTTTAGGGTTTTTA
1 TTTTAGGG--TTAGGGTTTTTA
71693700 GAGTTTATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
22 14 0.33
23 16 0.38
24 6 0.14
25 6 0.14
ACGTcount: A:0.16, C:0.00, G:0.27, T:0.57
Consensus pattern (22 bp):
TTTTAGGGTTAGGGTTTTTATA
Found at i:71694819 original size:125 final size:126
Alignment explanation
Indices: 71694387--71694828 Score: 613
Period size: 126 Copynumber: 3.5 Consensus size: 126
71694377 TGAGTAGACA
* * *
71694387 TTTCTGAACAAATAGTGTCGAAAACGCTTCATGCAGGATGCAATGTCAG-AAAATTTCTGGAAAA
1 TTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTTCT-GAAAA
* * * * * * *
71694451 AA-CTCCCACATGGACGCTTTTTTTGCTACAGTAGTTCGTAGAAAAATAAATCTGAGTAGATG
65 AAGCTTCCACGTGGACGC-TCTTTTGCTACAGTAGTTCGCAGAAAAATGAGTCTGAGTCGATG
* *
71694513 TTTCTGAACAGATAGTGTCGAAAACGCTTCAAGTAGGATGCACTGTCAGCAAAAGTTCTGAAAAA
1 TTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTTCTGAAAAA
* * * * *
71694578 AGCTTCCACGTGGACGCTCTTTTGCTATAGTAGTTCGCAGAAACATGAGCCTGAGTCAACG
66 AGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTTCGCAGAAAAATGAGTCTGAGTCGATG
* * *
71694639 TTTCTAAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTATC-GACTAAAGTTCTGAAAA
1 TTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAG-CAAAAGTTCTGAAAA
*
71694703 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTTCGCA-AAAAATGAGTCTAAGTCGATG
65 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTTCGCAGAAAAATGAGTCTGAGTCGATG
* * *
71694764 TTTTTGAACAAATATTGTCGAAAACGTTTCAAGCAGGATGCACTGTCAGCAAAAGTTCTGAAAAA
1 TTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTTCTGAAAAA
71694829 GGTCTCGTGT
Statistics
Matches: 278, Mismatches: 34, Indels: 9
0.87 0.11 0.03
Matches are distributed among these distances:
125 74 0.27
126 183 0.66
127 21 0.08
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.27
Consensus pattern (126 bp):
TTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTCAGCAAAAGTTCTGAAAAA
AGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTTCGCAGAAAAATGAGTCTGAGTCGATG
Found at i:71698098 original size:34 final size:35
Alignment explanation
Indices: 71698038--71698109 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
71698028 TTGTTGTAAA
* *
71698038 AAACTATGGTGTATTATTTATATTTTATT-AAATG
1 AAACTATGGTGTATTATATATATTTTATTCAAAAG
* *
71698072 AAACTATGTTGTATTATA-ATTGTTTTATTCAAAAG
1 AAACTATGGTGTATTATATA-TATTTTATTCAAAAG
71698107 AAA
1 AAA
71698110 TATATTAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 1 0.03
34 24 0.75
35 7 0.22
ACGTcount: A:0.39, C:0.04, G:0.11, T:0.46
Consensus pattern (35 bp):
AAACTATGGTGTATTATATATATTTTATTCAAAAG
Found at i:71698277 original size:21 final size:21
Alignment explanation
Indices: 71698239--71698278 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
71698229 TTGATCAGCT
* * *
71698239 TCCGGCGGGGGTTGTGGTTCC
1 TCCGGCAGGGGATCTGGTTCC
71698260 TCCGGCAGGGGATCTGGTT
1 TCCGGCAGGGGATCTGGTT
71698279 GTGGGTGTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.05, C:0.23, G:0.45, T:0.28
Consensus pattern (21 bp):
TCCGGCAGGGGATCTGGTTCC
Found at i:71698546 original size:18 final size:18
Alignment explanation
Indices: 71698523--71698560 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
71698513 TAGAAAAAAA
*
71698523 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAGGAT
71698541 ACATATAAGGGCTAGGAT
1 ACATATAAGGGCTAGGAT
71698559 AC
1 AC
71698561 GCACCTCGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.11, G:0.26, T:0.24
Consensus pattern (18 bp):
ACATATAAGGGCTAGGAT
Found at i:71700239 original size:48 final size:47
Alignment explanation
Indices: 71700154--71700287 Score: 182
Period size: 48 Copynumber: 2.8 Consensus size: 47
71700144 ATGCAAACAT
*
71700154 CATAAATGAAAAAAA-ATCAAGTAGTATTGAAATTTTAATTATAA-TTG
1 CATAAATGAAAAAAATATCAAATAGTATTGAAA-TTTAATTA-AATTTG
71700201 CATAAATGAAAAAAATATCAAATAGTATTGCAAATTTAATTAAATTTG
1 CATAAATGAAAAAAATATCAAATAGTATTG-AAATTTAATTAAATTTG
* * *
71700249 CATAAATTAAGAAAATATCGAATAGTATTGAAAATTTAA
1 CATAAATGAAAAAAATATCAAATAGTATTG-AAATTTAA
71700288 AATCATCACT
Statistics
Matches: 79, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
47 17 0.22
48 59 0.75
49 3 0.04
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (47 bp):
CATAAATGAAAAAAATATCAAATAGTATTGAAATTTAATTAAATTTG
Found at i:71700442 original size:11 final size:11
Alignment explanation
Indices: 71700426--71700483 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
71700416 ACAAATAAAA
71700426 TTGATAGAATT
1 TTGATAGAATT
71700437 TTGATAGAATT
1 TTGATAGAATT
* *
71700448 TTGAGAAAATT
1 TTGATAGAATT
** *
71700459 TCAAT-GAAAT
1 TTGATAGAATT
*
71700469 TTGATAGATTT
1 TTGATAGAATT
71700480 TTGA
1 TTGA
71700484 AGGGAATATT
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
10 6 0.17
11 29 0.83
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (11 bp):
TTGATAGAATT
Found at i:71704200 original size:42 final size:42
Alignment explanation
Indices: 71704144--71704350 Score: 175
Period size: 42 Copynumber: 4.8 Consensus size: 42
71704134 TGTGTGGTTT
*
71704144 CATGTAAGAACATATCTGGGATATGGAATTGATATGTGATCC
1 CATGTAAGACCATATCTGGGATATGGAATTGATATGTGATCC
**
71704186 CATGTAAGACCATATCTGGGATAT-GACATTGGCATCAATATGTGATTT
1 CATGTAAGACCATATCTGGGATATGGA-ATT-G-----ATATGTGATCC
* * * * **
71704234 CGTGTAAGACCATGTCTGGGATAT-GACATCGATATGAGATAT
1 CATGTAAGACCATATCTGGGATATGGA-ATTGATATGTGATCC
* * * * *
71704276 CGTGTAAGACCATAGCTGGGTTATTGGCATCGATATGTGATCC
1 CATGTAAGACCATATCTGGGATA-TGGAATTGATATGTGATCC
* *
71704319 CATGTAAGACCTTATCTGGGATATGGCATTGA
1 CATGTAAGACCATATCTGGGATATGGAATTGA
71704351 CATCTTACTA
Statistics
Matches: 136, Mismatches: 20, Indels: 18
0.78 0.11 0.10
Matches are distributed among these distances:
41 2 0.01
42 63 0.46
43 33 0.24
44 1 0.01
47 1 0.01
48 36 0.26
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (42 bp):
CATGTAAGACCATATCTGGGATATGGAATTGATATGTGATCC
Found at i:71704255 original size:90 final size:85
Alignment explanation
Indices: 71704136--71704350 Score: 234
Period size: 90 Copynumber: 2.5 Consensus size: 85
71704126 TAGGGTTATG
* * * * *
71704136 TGTGGTTTCATGTAAGAACATATCTGGGATATGGAATTGATATGTGATCCCATGTAAGACCATAT
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGAATTGATATGAGATACCATGTAAGACCATAG
71704201 CTGGGATATGACATTGGCATCAATA
66 CTGGG-T-T---ATTGGCATCAATA
* * * * *
71704226 TGTGATTTCGTGTAAGACCATGTCTGGGATAT-GACATCGATATGAGATATCGTGTAAGACCATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGA-ATTGATATGAGATACCATGTAAGACCATA
*
71704290 GCTGGGTTATTGGCATCGATA
65 GCTGGGTTATTGGCATCAATA
** * *
71704311 TGTGATCCCATGTAAGACCTTATCTGGGATATGGCATTGA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGAATTGA
71704351 CATCTTACTA
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
85 43 0.41
86 1 0.01
88 1 0.01
89 3 0.03
90 57 0.54
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.32
Consensus pattern (85 bp):
TGTGATTTCATGTAAGACCATATCTGGGATATGGAATTGATATGAGATACCATGTAAGACCATAG
CTGGGTTATTGGCATCAATA
Found at i:71707348 original size:49 final size:51
Alignment explanation
Indices: 71707288--71707419 Score: 141
Period size: 50 Copynumber: 2.6 Consensus size: 51
71707278 TCCATCAAGT
* * *
71707288 CGATGCTATGTCCCAGATATGGTTTTACACTGA-ATATCGA-A-ATC-GAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAGATATC-ACATATCTG-GGC
* * *
71707337 CGATGCCATGT-CCAGGACATGGTCTTACACT-AGCTCTCACATATCTGTGC
1 CGATGCCATGTCCCA-GACATGGTCTTACACTGAGATATCACATATCTGGGC
71707387 CGATGCCATGTCCCAGACATGGTCTTACACTGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA
71707420 TACATCTCTT
Statistics
Matches: 70, Mismatches: 6, Indels: 12
0.80 0.07 0.14
Matches are distributed among these distances:
48 5 0.07
49 28 0.40
50 32 0.46
51 5 0.07
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (51 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGAGATATCACATATCTGGGC
Found at i:71707470 original size:46 final size:48
Alignment explanation
Indices: 71707335--71707561 Score: 213
Period size: 46 Copynumber: 4.8 Consensus size: 48
71707325 CGAAATCGAG
* *
71707335 GCCGATGCCATGT-CCAGGACATGGTCTTACACTAGCTCTCACATATCTGT
1 GCCGATGCCATGTCCCA-GACATGGTCTTACACTAGCTCT-ACATCTCT-A
*
71707385 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G--ATACATCTCTTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTC-TA
* * * *
71707431 GCCGATG-CATATCCTAGACAT-GTCTTACACTGGCT-TACATCTCGA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCTA
* * *
71707476 GCCCGAT-ACATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAA
1 G-CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCTA
* * *
71707522 TGCCGATGCCATGTCCTAGACATAGTCTTACACTGGCTCT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT
71707562 TATAATGACA
Statistics
Matches: 152, Mismatches: 14, Indels: 24
0.80 0.07 0.13
Matches are distributed among these distances:
44 10 0.07
45 15 0.10
46 62 0.41
47 17 0.11
48 15 0.10
49 1 0.01
50 29 0.19
51 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTACATCTCTA
Found at i:71707580 original size:28 final size:28
Alignment explanation
Indices: 71707540--71707596 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
71707530 CCATGTCCTA
71707540 GACATAGTCTTACACTGGCTCTTATAAT
1 GACATAGTCTTACACTGGCTCTTATAAT
71707568 GACATAGTCTTACACTGGCTCTTATAAT
1 GACATAGTCTTACACTGGCTCTTATAAT
71707596 G
1 G
71707597 TGGTCGATGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (28 bp):
GACATAGTCTTACACTGGCTCTTATAAT
Found at i:71708314 original size:16 final size:17
Alignment explanation
Indices: 71708293--71708330 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
71708283 AAGCTCATGC
71708293 TACAA-GGTTCTAAAAG
1 TACAAGGGTTCTAAAAG
71708309 TACAAGGGTTCTAAAAG
1 TACAAGGGTTCTAAAAG
71708326 TACAA
1 TACAA
71708331 AAATCATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.45, C:0.13, G:0.18, T:0.24
Consensus pattern (17 bp):
TACAAGGGTTCTAAAAG
Found at i:71710611 original size:27 final size:27
Alignment explanation
Indices: 71710577--71710754 Score: 198
Period size: 27 Copynumber: 6.6 Consensus size: 27
71710567 TAAATTGTAC
71710577 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
71710604 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
71710630 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
71710658 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
71710686 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
71710713 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
71710740 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71710755 GACTCAATAT
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 104 0.81
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:71710691 original size:82 final size:81
Alignment explanation
Indices: 71710578--71710733 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
71710568 AAATTGTACA
* *
71710578 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
71710642 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
71710659 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
71710724 TGCGAGTTGA
65 TGCGAATTGA
71710734 TGATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71710745 original size:82 final size:81
Alignment explanation
Indices: 71710574--71710754 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
71710564 GAGTAAATTG
* *
71710574 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
71710639 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
71710655 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
71710719 AAGTGTGCGAGTTGATGA
64 AAGTGTGCGAATTGACCA
* *
71710737 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
71710755 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:71717273 original size:60 final size:60
Alignment explanation
Indices: 71717180--71717299 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 60
71717170 TTAATACGGG
71717180 CCTACGAAGCCCCAAACATCTATTGGAAACCATTCGAGACCAACCGGGGTCATTTAACTA
1 CCTACGAAGCCCCAAACATCTATTGGAAACCATTCGAGACCAACCGGGGTCATTTAACTA
*
71717240 CCTACGAAGCCCCAAACATCTATTGGAAACCATTCGGGACCAACCGGGGTCATTTAACTA
1 CCTACGAAGCCCCAAACATCTATTGGAAACCATTCGAGACCAACCGGGGTCATTTAACTA
71717300 ACTTTAGAAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (60 bp):
CCTACGAAGCCCCAAACATCTATTGGAAACCATTCGAGACCAACCGGGGTCATTTAACTA
Found at i:71719330 original size:42 final size:42
Alignment explanation
Indices: 71719262--71719399 Score: 127
Period size: 42 Copynumber: 3.2 Consensus size: 42
71719252 TCCTAGACTT
* * *
71719262 GGTCTTACATGTAATTC-AGTATCGATGCTTCTGTCCCAGACAG
1 GGTCTTACATG-AATTCAAATA-CGATGCTTATGTCCCAGACAC
* * *
71719305 GGTCTTACATGAATTCAAATACGATGCTGATATCCCAGACAT
1 GGTCTTACATGAATTCAAATACGATGCTTATGTCCCAGACAC
* * * *
71719347 GGTCTTACACGTAAATCTCAAAT-CGAGGCCTATGTCCTAGACAC
1 GGTCTTACA--TGAAT-TCAAATACGATGCTTATGTCCCAGACAC
71719391 GGTCTTACA
1 GGTCTTACA
71719400 CAATATCTCA
Statistics
Matches: 79, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
42 31 0.39
43 14 0.18
44 28 0.35
45 6 0.08
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (42 bp):
GGTCTTACATGAATTCAAATACGATGCTTATGTCCCAGACAC
Found at i:71721525 original size:46 final size:43
Alignment explanation
Indices: 71721439--71721561 Score: 131
Period size: 46 Copynumber: 2.7 Consensus size: 43
71721429 ACATATCTGT
*
71721439 GCCGATGCCATGTCCCAAGCATGGTCTTACGCTGACACATCTC-ATA
1 GCCGATG-CATGTCCCAA-CAT-GTCTTACACTGACACATCTCGA-A
* *
71721485 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAG
1 GCCGATGCATGTCCCA-ACATGTCTTACACTGAC--ACATCTCGAA
*
71721531 GCTGATGCATGTCCCAAACATGTCTTACACT
1 GCCGATGCATGTCCC-AACATGTCTTACACT
71721562 TGATACGTGA
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
44 11 0.16
45 12 0.18
46 43 0.63
47 2 0.03
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (43 bp):
GCCGATGCATGTCCCAACATGTCTTACACTGACACATCTCGAA
Found at i:71738103 original size:14 final size:15
Alignment explanation
Indices: 71738074--71738103 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
71738064 AAAAATTAAG
71738074 ACATGATACTTTCAC
1 ACATGATACTTTCAC
71738089 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
71738103 A
1 A
71738104 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:71741657 original size:22 final size:22
Alignment explanation
Indices: 71741632--71741677 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
71741622 TGTGTAAAGT
71741632 ATGGGAAAGAATTAAGGACAAC
1 ATGGGAAAGAATTAAGGACAAC
71741654 ATGGGAAAGAATTAAGGACAAC
1 ATGGGAAAGAATTAAGGACAAC
71741676 AT
1 AT
71741678 AAGTCTTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.50, C:0.09, G:0.26, T:0.15
Consensus pattern (22 bp):
ATGGGAAAGAATTAAGGACAAC
Found at i:71746236 original size:42 final size:42
Alignment explanation
Indices: 71746189--71746390 Score: 192
Period size: 42 Copynumber: 4.6 Consensus size: 42
71746179 TGTGGTTTCG
*
71746189 TGTAAGACCATATCTGGGATATGGCCTCGATATGTGATCTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGTGATCTCA
* * * *
71746231 TGTAAGGCCATATCTGGGATATGGCATTGGCATCAATATGTGATTTCG
1 TGTAAGACCATATCTGGG--AT---A-TGGCATCGATATGTGATCTCA
* * *
71746279 TGTAATACCATGTCTGGGCA-ATGGCATCGATATGAGA-CATCA
1 TGTAAGACCATATCTGGG-ATATGGCATCGATATGTGATC-TCA
* * * *
71746321 TGTAAGATCATAGCTGGGCTATTGGCATCGATATGTGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGTGATCTCA
*
71746364 TGTAAGACCATATCTAGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
71746391 TGGCATCTTA
Statistics
Matches: 126, Mismatches: 24, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
42 54 0.43
43 35 0.28
44 3 0.02
47 2 0.02
48 32 0.25
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGTGATCTCA
Found at i:71746338 original size:90 final size:91
Alignment explanation
Indices: 71746179--71746348 Score: 220
Period size: 90 Copynumber: 1.9 Consensus size: 91
71746169 TAGGGTTATG
* * * * *
71746179 TGTGGTTTCGTGTAAGACCATATCTGGGATATGGCCTCGATATGTGATCTCATGTAAGGCCATAT
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATCTCATGTAAGACCATAG
71746244 CTGGGATA-TGGCATTGGCATCAATA
66 CTGGGATATTGGCATTGGCATCAATA
* * *
71746269 TGTGATTTCGTGTAATACCATGTCTGGGCA-ATGGCATCGATATGAGA-CATCATGTAAGATCAT
1 TGTGATTTCGTGTAAGACCATATCTGGG-ATATGGCATCGATATGAGATC-TCATGTAAGACCAT
*
71746332 AGCTGGGCTATTGGCAT
64 AGCTGGGATATTGGCAT
71746349 CGATATGTGA
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
89 1 0.01
90 60 0.88
91 7 0.10
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (91 bp):
TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATATGAGATCTCATGTAAGACCATAG
CTGGGATATTGGCATTGGCATCAATA
Found at i:71756782 original size:44 final size:44
Alignment explanation
Indices: 71756714--71757028 Score: 161
Period size: 49 Copynumber: 6.7 Consensus size: 44
71756704 TATACAAGCT
* *
71756714 AGTGTAAGACCTATCTGGGTCATGGCGTCAGCTTGTTGTGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCGTCAGCTTGTTGTGTGTC
* * * * * *
71756758 AGTGTAAGACCTGT-TGTGGACATGGCATTGACACCGATAGATGAGAG-C
1 AGTGTAAGACCTGTCTG-GGACATGGC---GTCA--GCTTGTTGTGTGTC
* *
71756806 TAGTGTAAGACCGGTCTGGGACATGGCGTCAGCTTGTTCTGTGTC
1 -AGTGTAAGACCTGTCTGGGACATGGCGTCAGCTTGTTGTGTGTC
* * * * * *
71756851 AGTGCAAGACCTGTCTGGGACATGGCATC-GACATCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCGTCAG-C-T---T-GTTGTGTGTC
* * * * * * *
71756900 AGTGTAAGACCTATTTGAGACACGGCATCAGCCTTGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCGTCAG-CTTG-T-TGTG--TGTC
* * *
71756949 AGTGTAAGACCTGTCTGGGACATGGCATC-GACTTTGATGTGTTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCGTCAG-C-TTGTTGTG-T-GTC
71756996 AGTGTAAGACCATGTCTGGGACATGGCGTCAGC
1 AGTGTAAGACC-TGTCTGGGACATGGCGTCAGC
71757029 ATCTTATCCC
Statistics
Matches: 202, Mismatches: 45, Indels: 44
0.69 0.15 0.15
Matches are distributed among these distances:
43 3 0.01
44 54 0.27
45 3 0.01
46 4 0.02
47 21 0.10
48 22 0.11
49 91 0.45
50 4 0.02
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.26
Consensus pattern (44 bp):
AGTGTAAGACCTGTCTGGGACATGGCGTCAGCTTGTTGTGTGTC
Found at i:71756812 original size:93 final size:93
Alignment explanation
Indices: 71756714--71757028 Score: 375
Period size: 93 Copynumber: 3.3 Consensus size: 93
71756704 TATACAAGCT
* *
71756714 AGTGTAAGACCTATCTGGGTCATGGCGTCAGCTTGTTGTGTGTCAGTGTAAGACCTGT-TGTGGA
1 AGTGTAAGACCTATCTGGGACATGGCGTCAGCTTGTTATGTGTCAGTGTAAGACCTGTCTG-GGA
* * *
71756778 CATGGCATTGACACCGATAGATGAGAGCT
65 CATGGCATCGACATCGATAGATGAGAGCC
** * *
71756807 AGTGTAAGACCGGTCTGGGACATGGCGTCAGCTTGTTCTGTGTCAGTGCAAGACCTGTCTGGGAC
1 AGTGTAAGACCTATCTGGGACATGGCGTCAGCTTGTTATGTGTCAGTGTAAGACCTGTCTGGGAC
71756872 ATGGCATCGACATCGATAGATGAGAGCC
66 ATGGCATCGACATCGATAGATGAGAGCC
* * * * *
71756900 AGTGTAAGACCTATTTGAGACACGGCATCAGCCTTGATATATGAAAGTCAGTGTAAGACCTGTCT
1 AGTGTAAGACCTATCTGGGACATGGCGTCAG-CTTG-T-TATG--TGTCAGTGTAAGACCTGTCT
* * **
71756965 GGGACATGGCATCGACTTTGAT-G-TGTTAGCC
61 GGGACATGGCATCGACATCGATAGATGAGAGCC
*
71756996 AGTGTAAGACCATGTCTGGGACATGGCGTCAGC
1 AGTGTAAGACC-TATCTGGGACATGGCGTCAGC
71757029 ATCTTATCCC
Statistics
Matches: 189, Mismatches: 26, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
93 107 0.57
94 6 0.03
95 1 0.01
96 21 0.11
97 16 0.08
98 38 0.20
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.26
Consensus pattern (93 bp):
AGTGTAAGACCTATCTGGGACATGGCGTCAGCTTGTTATGTGTCAGTGTAAGACCTGTCTGGGAC
ATGGCATCGACATCGATAGATGAGAGCC
Found at i:71756927 original size:49 final size:49
Alignment explanation
Indices: 71756757--71757022 Score: 210
Period size: 49 Copynumber: 5.6 Consensus size: 49
71756747 TGTTGTGTGT
* ** *
71756757 CAGTGTAAGACCTGT-TGTGGACATGGCATTGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTG-GGACATGGCATCGACATTGATAGATGAAAGC
* * * ** * *
71756806 TAGTGTAAGACCGGTCTGGGACATGGCGTC-AGC-TTG-T-TCTG--TGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-CATTGATAGATGAAAGC
* * *
71756850 CAGTGCAAGACCTGTCTGGGACATGGCATCGACATCGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAAAGC
* * * * * * *
71756899 CAGTGTAAGACCTATTTGAGACACGGCATC-AGCCTTGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-CATTGATAGATGAAAGC
* **
71756948 CAGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGAT-G-TGTTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAAAGC
71756995 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
71757023 GTCAGCATCT
Statistics
Matches: 168, Mismatches: 38, Indels: 23
0.73 0.17 0.10
Matches are distributed among these distances:
44 28 0.17
45 3 0.02
46 3 0.02
47 19 0.11
48 18 0.11
49 94 0.56
50 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATAGATGAAAGC
Found at i:71757445 original size:22 final size:22
Alignment explanation
Indices: 71757420--71757464 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
71757410 TGATAAACTT
71757420 AGTATCATTAACTTACACTAAA
1 AGTATCATTAACTTACACTAAA
71757442 AGTATCATTAACTTACACTAAA
1 AGTATCATTAACTTACACTAAA
71757464 A
1 A
71757465 CAATTTTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (22 bp):
AGTATCATTAACTTACACTAAA
Found at i:71760354 original size:11 final size:11
Alignment explanation
Indices: 71760318--71760373 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
71760308 CATGGTATGT
71760318 ATGATATGCAC
1 ATGATATGCAC
* *
71760329 ATGACATG--T
1 ATGATATGCAC
71760338 ATGATATGCAC
1 ATGATATGCAC
*
71760349 ATGATATG--T
1 ATGATATGCAC
71760358 ATGATATGCAC
1 ATGATATGCAC
71760369 ATGAT
1 ATGAT
71760374 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:71760373 original size:20 final size:20
Alignment explanation
Indices: 71760307--71760373 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
71760297 ATTTTGATAA
*
71760307 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
71760327 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
71760347 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
71760367 ACATGAT
1 ACATGAT
71760374 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:71760479 original size:24 final size:23
Alignment explanation
Indices: 71760423--71760568 Score: 193
Period size: 24 Copynumber: 6.2 Consensus size: 23
71760413 GAGGAATTGA
71760423 AAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
71760446 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
71760469 CAAAAGTGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
**
71760493 CAAAAGGGCTTACACCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
71760517 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
* *
71760540 AAAAAGGGCTTTTGCCCTAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
71760565 AAAA
1 AAAA
71760569 TAGGCTAGGC
Statistics
Matches: 108, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
23 42 0.39
24 65 0.60
25 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:71760492 original size:47 final size:47
Alignment explanation
Indices: 71760423--71760568 Score: 195
Period size: 47 Copynumber: 3.1 Consensus size: 47
71760413 GAGGAATTGA
*
71760423 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * **
71760469 CAAAAGTGCTTATGCCCCAGTTATCAAAAGGGCTTACACCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * *
71760517 TAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
71760565 AAAA
1 AAAA
71760569 TAGGCTAGGC
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
47 61 0.72
48 24 0.28
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:71760539 original size:71 final size:71
Alignment explanation
Indices: 71760423--71760568 Score: 229
Period size: 71 Copynumber: 2.1 Consensus size: 71
71760413 GAGGAATTGA
** * *
71760423 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGTGCTTATGCCCCA
1 AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
71760488 GTTATC
66 GTTATC
* *
71760494 AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCTA
1 AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
71760559 GTTATT
66 GTTATC
71760565 AAAA
1 AAAA
71760569 TAGGCTAGGC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (71 bp):
AAAAGGGCTTACACCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATC
Found at i:71760574 original size:25 final size:24
Alignment explanation
Indices: 71760422--71760589 Score: 191
Period size: 24 Copynumber: 7.0 Consensus size: 24
71760412 GGAGGAATTG
71760422 AAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
*
71760446 -TAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
* *
71760469 CAAAAGTGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
* **
71760493 CAAAAGGGCTTACACCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
*
71760517 -TAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
* *
71760540 AAAAAGGGCTTTTGCCCTAGTTATT
1 AAAAAGGGCTTATGCCCCAGTTA-T
*
71760565 AAAATA-GGC-TAGGCCTCCAGTTAT
1 AAAA-AGGGCTTATGCC-CCAGTTAT
71760589 A
1 A
71760590 TGATAAAGTA
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
23 42 0.34
24 67 0.54
25 14 0.11
26 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (24 bp):
AAAAAGGGCTTATGCCCCAGTTAT
Found at i:71760817 original size:31 final size:31
Alignment explanation
Indices: 71760782--71760845 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
71760772 CGTTTACAGT
*
71760782 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
71760813 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
71760844 AA
1 AA
71760846 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:71763673 original size:47 final size:47
Alignment explanation
Indices: 71763620--71763811 Score: 269
Period size: 47 Copynumber: 4.1 Consensus size: 47
71763610 TTAGGATTTT
* * *
71763620 AATGTGATGAATGTGAAAATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
71763667 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
71763714 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAAGGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
71763761 GATGTGATGAATGTGAACATGTATATATGTGGA-AAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGT-GATAAGGCCGAATGGCC
71763808 AATG
1 AATG
71763812 CGAAATGTGT
Statistics
Matches: 132, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
47 130 0.98
48 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.24
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:71763921 original size:46 final size:46
Alignment explanation
Indices: 71763785--71763921 Score: 168
Period size: 46 Copynumber: 3.0 Consensus size: 46
71763775 GAACATGTAT
*
71763785 ATATGTGG-AAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAA-GCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * * *
71763831 ATATGAGATAAAGACGAATGGCTAATGCGAAACGTATATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
71763877 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
71763922 TGTATATATA
Statistics
Matches: 75, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
46 72 0.96
47 3 0.04
ACGTcount: A:0.37, C:0.08, G:0.30, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:71765851 original size:40 final size:40
Alignment explanation
Indices: 71765408--71765839 Score: 621
Period size: 40 Copynumber: 10.8 Consensus size: 40
71765398 AAGAATTGAG
* *
71765408 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTTCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
71765448 AGTGATGTATCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
71765488 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
71765528 AGTGATATATCCGGGGTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
71765568 AGTGATGTATCCTGGCTAAGTCGCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** * *
71765608 AGTGACGTATCCGGGCTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
71765648 AGTGATATATCCGGGCTAAGTCCCGAAAAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
71765688 AGTGATGTATCCGGGCTAAGTCCCGAAGAGAATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
71765728 AGTGACATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** **
71765768 AGTGATATATCCATGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
71765808 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
71765840 ATTATGCTGG
Statistics
Matches: 345, Mismatches: 47, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 345 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:71769929 original size:47 final size:47
Alignment explanation
Indices: 71769876--71770067 Score: 260
Period size: 47 Copynumber: 4.1 Consensus size: 47
71769866 TTAGGATTTT
* * *
71769876 AATGTGATGAATGTGAAAATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
71769923 AATGTGATGAATGTGAACATGCGTATGTGCGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
71769970 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCTGAAGGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
71770017 GATGTGATGAATGTGAACATGTATATATGTGGA-AAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGT-GATAAGGCCGAATGGCC
71770064 AATG
1 AATG
71770068 CGAAATGTGT
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
47 128 0.98
48 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.31, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:71770177 original size:46 final size:46
Alignment explanation
Indices: 71770041--71770177 Score: 177
Period size: 46 Copynumber: 3.0 Consensus size: 46
71770031 GAACATGTAT
*
71770041 ATATGTGG-AAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAA-GCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
71770087 ATATGAGATAAAGCCGAATGGCTAATGCGAAACGTATATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
71770133 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
71770178 TGTATATATA
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
46 74 0.96
47 3 0.04
ACGTcount: A:0.36, C:0.09, G:0.30, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:71778685 original size:11 final size:11
Alignment explanation
Indices: 71778649--71778704 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
71778639 CATGGTATGT
71778649 ATGATATGCAC
1 ATGATATGCAC
* *
71778660 ATGACATG--T
1 ATGATATGCAC
71778669 ATGATATGCAC
1 ATGATATGCAC
*
71778680 ATGATATG--T
1 ATGATATGCAC
71778689 ATGATATGCAC
1 ATGATATGCAC
71778700 ATGAT
1 ATGAT
71778705 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:71778704 original size:20 final size:20
Alignment explanation
Indices: 71778638--71778704 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
71778628 ATTTTGATAA
*
71778638 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
71778658 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
71778678 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
71778698 ACATGAT
1 ACATGAT
71778705 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:71778810 original size:24 final size:23
Alignment explanation
Indices: 71778754--71778905 Score: 178
Period size: 24 Copynumber: 6.4 Consensus size: 23
71778744 GAGGAAGTGA
* *
71778754 AAAAAGGCTTATGCCCTAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
71778777 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
71778800 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
** *
71778824 CAAAAGGGCTTACACCCTAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
* *
71778848 TAAAGGGCTTATGCCGCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
71778871 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
71778896 AAAAGAGGCT
1 AAAAG-GGCT
71778906 AGGCCTCTAG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
23 38 0.35
24 67 0.61
25 5 0.05
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:71778823 original size:47 final size:47
Alignment explanation
Indices: 71778754--71778905 Score: 180
Period size: 47 Copynumber: 3.2 Consensus size: 47
71778744 GAGGAAGTGA
* * *
71778754 AAAAAGGCTTATGCCCTAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* ** *
71778800 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACACCCTAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
* * *
71778848 TAAAGGGCTTATGCCGCAGTTATAAAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTA-T
71778896 AAAAGAGGCT
1 AAAAG-GGCT
71778906 AGGCCTCTAG
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
47 60 0.68
48 24 0.27
49 4 0.05
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCAGTTAT
Found at i:71778876 original size:71 final size:72
Alignment explanation
Indices: 71778753--71778905 Score: 236
Period size: 71 Copynumber: 2.1 Consensus size: 72
71778743 GGAGGAAGTG
* ** *
71778753 AAAAAAGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCC
1 AAAAGAGGCTTACACCCTAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCC
71778818 AGTTATC
66 AGTTATC
* *
71778825 AAAAG-GGCTTACACCCTAGTTATTAAAGGGCTTATGCCGCAGTTATAAAAAGGGCTTTTGCCCC
1 AAAAGAGGCTTACACCCTAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCC
*
71778889 AGTTATT
66 AGTTATC
71778896 AAAAGAGGCT
1 AAAAGAGGCT
71778906 AGGCCTCTAG
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
71 65 0.89
72 8 0.11
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (72 bp):
AAAAGAGGCTTACACCCTAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCC
AGTTATC
Found at i:71779151 original size:31 final size:31
Alignment explanation
Indices: 71779113--71779176 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
71779103 CGTTTACAGT
* *
71779113 AAAGGCTTTAGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* **
71779144 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
71779175 AA
1 AA
71779177 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.14, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:71791451 original size:25 final size:25
Alignment explanation
Indices: 71791417--71791500 Score: 66
Period size: 25 Copynumber: 3.4 Consensus size: 25
71791407 GCAGCTCTTA
*
71791417 TGAGCGTCCTGTTATAGGCTATTCT
1 TGAGCTTCCTGTTATAGGCTATTCT
* **
71791442 TGAGCTTCCTGATAT-GGCT-CGCT
1 TGAGCTTCCTGTTATAGGCTATTCT
* * *
71791465 TGAACATCCTGTTAAATGGCTATT-T
1 TGAGCTTCCTGTTATA-GGCTATTCT
*
71791490 GGAGCTTCCTG
1 TGAGCTTCCTG
71791501 GTAATAGCTC
Statistics
Matches: 43, Mismatches: 13, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
23 13 0.30
24 4 0.09
25 26 0.60
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (25 bp):
TGAGCTTCCTGTTATAGGCTATTCT
Found at i:71791616 original size:25 final size:25
Alignment explanation
Indices: 71791581--71791628 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
71791571 TAAAGCCCAG
*
71791581 ATGAGCTTCCTATTACATGGCTCAC
1 ATGAGCATCCTATTACATGGCTCAC
* *
71791606 ATGAGCATCCTGTTATATGGCTC
1 ATGAGCATCCTATTACATGGCTC
71791629 GAGAGAGTGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (25 bp):
ATGAGCATCCTATTACATGGCTCAC
Found at i:71797676 original size:48 final size:47
Alignment explanation
Indices: 71797607--71798032 Score: 384
Period size: 48 Copynumber: 8.9 Consensus size: 47
71797597 ATGGATACCT
* * * *
71797607 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAACAAAGCT
1 GATGCCATGT-CCAAACATGGTCTTACACTAGCTCTCATAACAAGGCC
* * * * *** *
71797655 GATGCCATGCTCCAAACATGGTCTTACCCTGGTTCACATATTGAGGCT
1 GATGCCATG-TCCAAACATGGTCTTACACTAGCTCTCATAACAAGGCC
* *
71797703 GATGCCATGTCGCAGACATGGTCTTACACTAGCTCTCATAACAATGCC
1 GATGCCATGTC-CAAACATGGTCTTACACTAGCTCTCATAACAAGGCC
* * * ***
71797751 AATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCC
1 GATGCCATG-TCCAAACATGGTCTTACACTAGCTCTCATAACAAGGCC
* ** *
71797799 GATGCCATGTCCCAGACATAATCTTACACTAGCTCTCATAACAATGCC
1 GATGCCATGT-CCAAACATGGTCTTACACTAGCTCTCATAACAAGGCC
* * * ***
71797847 GATGCCATGTTCCAAACATGGTCTTACACTGGCACACATATTGAGGCC
1 GATGCCATG-TCCAAACATGGTCTTACACTAGCTCTCATAACAAGGCC
* * * *
71797895 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAAAAATGTC
1 GATGCCATGTCC-AAACATGGTCTTACACTAGCTCTCATAACAAGGCC
* * ***
71797943 GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATTGAGGCC
1 GATGCCATG-TCCAAACATGGTCTTACACTAGCTCTCATAACAAGGCC
* ** *
71797991 AATGCCATGTTCCAAATGTGGTCTTACACTAGCTCACATAAC
1 GATGCCATG-TCCAAACATGGTCTTACACTAGCTCTCATAAC
71798033 CCTAGCATCA
Statistics
Matches: 300, Mismatches: 71, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
47 6 0.02
48 287 0.96
49 7 0.02
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCAAACATGGTCTTACACTAGCTCTCATAACAAGGCC
Found at i:71797769 original size:96 final size:95
Alignment explanation
Indices: 71797607--71798032 Score: 645
Period size: 96 Copynumber: 4.4 Consensus size: 95
71797597 ATGGATACCT
* * * *
71797607 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTAACAAAGCTGATGCCATGCTCCAAAC
1 GATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAAC
* * *
71797672 ATGGTCTTACCCTGGTTCACATATTGAGGCT
65 ATGGTCTTACACTGGCTCACATATTGAGGCC
*
71797703 GATGCCATGTCGCAGACATGGTCTTACACTAGCTCTCATAACAATGCCAATGCCATGTTCCAAAC
1 GATGCCATGTC-CAGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAAC
71797768 ATGGTCTTACACTGGCTCACATATTGAGGCC
65 ATGGTCTTACACTGGCTCACATATTGAGGCC
**
71797799 GATGCCATGTCCCAGACATAATCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAAC
1 GATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAAC
*
71797864 ATGGTCTTACACTGGCACACATATTGAGGCC
65 ATGGTCTTACACTGGCTCACATATTGAGGCC
* *
71797895 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAAAAATGTCGATGCCATGTTCCAAAC
1 GATGCCATGTCC-AGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAAC
71797960 ATGGTCTTACACTGGCTCACATATTGAGGCC
65 ATGGTCTTACACTGGCTCACATATTGAGGCC
* * ** *
71797991 AATGCCATGTTCCAAATGTGGTCTTACACTAGCTCACATAAC
1 GATGCCATG-TCCAGACATGGTCTTACACTAGCTCTCATAAC
71798033 CCTAGCATCA
Statistics
Matches: 303, Mismatches: 23, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
95 3 0.01
96 296 0.98
97 4 0.01
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (95 bp):
GATGCCATGTCCAGACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAACA
TGGTCTTACACTGGCTCACATATTGAGGCC
Found at i:71808978 original size:48 final size:47
Alignment explanation
Indices: 71808922--71809190 Score: 207
Period size: 48 Copynumber: 5.6 Consensus size: 47
71808912 ATCCCATGTC
** *
71808922 CCAAACATGGTCTTACACTAGCTCTGGTAACAAAGCCGATGCCATCTT
1 CCAAACATGGTCTTACACTAGCTCTCATAACAAAGCTGATGCCAT-TT
* * *** * *
71808970 CCAAACATGGTCTTACACTGGCTCACATATTGAGGCTGATGCCATGT
1 CCAAACATGGTCTTACACTAGCTCTCATAACAAAGCTGATGCCATTT
* * *
71809017 CCTAGACATGGTCTTACAGTAGCTCTCATAACAATGCTGATGCCATGTT
1 CC-AAACATGGTCTTACACTAGCTCTCATAACAAAGCTGATGCCAT-TT
* *** * * *
71809066 CCAAACATGGTCTTACACTGGCT-TACATATTGAGGCCGATGCCATGT
1 CCAAACATGGTCTTACACTAGCTCT-CATAACAAAGCTGATGCCATTT
** * * * * * *
71809113 CCGAGGCATGATCTTTCAATAGCTCTCATAATAATGCCGATGCCATGTT
1 CC-AAACATGGTCTTACACTAGCTCTCATAACAAAGCTGATGCCAT-TT
* *
71809162 CCAAACATGGTCTTACACTGGCTCACATA
1 CCAAACATGGTCTTACACTAGCTCTCATA
71809191 TCGAGGCCAA
Statistics
Matches: 170, Mismatches: 45, Indels: 12
0.75 0.20 0.05
Matches are distributed among these distances:
47 7 0.04
48 156 0.92
49 7 0.04
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (47 bp):
CCAAACATGGTCTTACACTAGCTCTCATAACAAAGCTGATGCCATTT
Found at i:71809079 original size:96 final size:96
Alignment explanation
Indices: 71808910--71809240 Score: 419
Period size: 96 Copynumber: 3.4 Consensus size: 96
71808900 GGTAAGATGT
* * * ** * *
71808910 CGATCCCATGTCCCAAACATGGTCTTACACTAGCTCTGGTAACAAAGCCGATGCCATCTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCATAACAATGCCGATGCCATGTTCCAAA
71808975 CATGGTCTTACACTGGCTCACATATTGAGGC
66 CATGGTCTTACACTGGCTCACATATTGAGGC
* * * *
71809006 TGATGCCATGTCCTAGACATGGTCTTACAGTAGCTCTCATAACAATGCTGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCATAACAATGCCGATGCCATGTTCCAAA
*
71809071 CATGGTCTTACACTGGCTTACATATTGAGGC
66 CATGGTCTTACACTGGCTCACATATTGAGGC
* * * * *
71809102 CGATGCCATGTCCGAGGCATGATCTTTCAATAGCTCTCATAATAATGCCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCATAACAATGCCGATGCCATGTTCCAAA
*
71809167 CATGGTCTTACACTGGCTCACATATCGAGGC
66 CATGGTCTTACACTGGCTCACATATTGAGGC
* * * ** * * * *
71809198 CAATGTCTTGTTTCAAACATGGTCTTACATTGGCTCACATAAC
1 CGATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCATAAC
71809241 CCTAGTATCA
Statistics
Matches: 200, Mismatches: 35, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 200 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACAATAGCTCTCATAACAATGCCGATGCCATGTTCCAAA
CATGGTCTTACACTGGCTCACATATTGAGGC
Done.