Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 220 of 325
Found at i:71812147 original size:28 final size:28
Alignment explanation
Indices: 71812115--71812184 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
71812105 AATGAGATTG
*
71812115 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
* *
71812143 GCACTAAGTGTGTGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
71812171 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71812185 GACTTACTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 35 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:71819974 original size:28 final size:28
Alignment explanation
Indices: 71819905--71819974 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
71819895 AATGAGATTG
*
71819905 GCACTAAGTGTGCAAGTTTAATTGTATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
* *
71819933 GCACTAAGTGTGCGAGTTTGATTAT-TAA
1 GCACTAAGTGTGCGAGTTTAATTGTAT-A
71819961 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71819975 GACTTACTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:71830351 original size:25 final size:25
Alignment explanation
Indices: 71830316--71830364 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
71830306 CACAACCCGG
*
71830316 ATGAGCTTCCTGTTACATGGCTCAC
1 ATGAGCATCCTGTTACATGGCTCAC
*
71830341 ATGAGCATCCTGTTATATGGCTCA
1 ATGAGCATCCTGTTACATGGCTCA
71830365 AGAGAGCGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (25 bp):
ATGAGCATCCTGTTACATGGCTCAC
Found at i:71831848 original size:28 final size:29
Alignment explanation
Indices: 71831816--71831930 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
71831806 TACCTGTATC
* *
71831816 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
71831844 TGGCCCATTAGGCCCAAATCACCTAT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
71831873 TGACCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* * *
71831902 TCGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
71831930 T
1 T
71831931 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 27 0.36
29 46 0.62
30 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:71832160 original size:8 final size:8
Alignment explanation
Indices: 71832149--71832179 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
71832139 AGTTTCAGCT
71832149 TTTCGGCA
1 TTTCGGCA
*
71832157 TTTCGACA
1 TTTCGGCA
71832165 TTTCGGCA
1 TTTCGGCA
71832173 TTTCGGC
1 TTTCGGC
71832180 TTTTACCGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.13, C:0.26, G:0.23, T:0.39
Consensus pattern (8 bp):
TTTCGGCA
Found at i:71834665 original size:40 final size:40
Alignment explanation
Indices: 71834603--71834818 Score: 305
Period size: 40 Copynumber: 5.4 Consensus size: 40
71834593 AAACCAAGTA
* * *
71834603 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
**
71834642 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
71834682 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
71834722 CCTTCGGGACTTAGCCCAGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
71834762 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
71834802 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
71834819 CGTTATCATC
Statistics
Matches: 163, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 14 0.09
40 149 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:71841646 original size:6 final size:6
Alignment explanation
Indices: 71841637--71841808 Score: 75
Period size: 6 Copynumber: 27.8 Consensus size: 6
71841627 AATCGAAATG
* * * * * *
71841637 AGAATT AGAATC AGAATC AAAATC AG-GTGAC AGAATC AAAATT AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * ** **
71841686 AGAATC AGAATT AGGTAA-C AGAATT AGTGTC AGTGTC AGGTAA-C AGAATC
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * *
71841736 AGAATC AGAACC AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
*
71841785 AGGTAA-C AGAATT AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
71841809 GTGCATGCAA
Statistics
Matches: 126, Mismatches: 25, Indels: 30
0.70 0.14 0.17
Matches are distributed among these distances:
5 9 0.07
6 98 0.78
7 13 0.10
8 6 0.05
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:71841689 original size:37 final size:37
Alignment explanation
Indices: 71841639--71841709 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
71841629 TCGAAATGAG
* *
71841639 AATTAGAATCAGAATCAAAATCAGGTGACAGAATCAA
1 AATTAAAATCAGAATCAAAATCAGGTAACAGAATCAA
* *
71841676 AATTAAAATCAGAATCAGAATTAGGTAACAGAAT
1 AATTAAAATCAGAATCAAAATCAGGTAACAGAAT
71841710 TAGTGTCAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.52, C:0.11, G:0.15, T:0.21
Consensus pattern (37 bp):
AATTAAAATCAGAATCAAAATCAGGTAACAGAATCAA
Found at i:71841743 original size:25 final size:25
Alignment explanation
Indices: 71841682--71841745 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
71841672 TCAAAATTAA
*
71841682 AATCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
* ** **
71841707 AATTAGTGTCAGTGTCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAG
71841732 AATCAGAATCAGAA
1 AATCAGAATCAGAA
71841746 CCAGAATCAG
Statistics
Matches: 28, Mismatches: 11, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAG
Found at i:71841775 original size:25 final size:25
Alignment explanation
Indices: 71841729--71841808 Score: 101
Period size: 25 Copynumber: 3.2 Consensus size: 25
71841719 TGTCAGGTAA
*
71841729 CAGAATCA-G-AATCAGAACCAGAAT
1 CAGAATCAGGTAA-CAGAATCAGAAT
*
71841753 CAGAATTAGGTAACAGAATCAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
* *
71841778 CAGTATCAGGTAACAGAATTAGAAT
1 CAGAATCAGGTAACAGAATCAGAAT
71841803 CAGAAT
1 CAGAAT
71841809 GTGCATGCAA
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
24 7 0.15
25 39 0.81
26 2 0.04
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGGTAACAGAATCAGAAT
Found at i:71841796 original size:19 final size:19
Alignment explanation
Indices: 71841721--71841780 Score: 88
Period size: 19 Copynumber: 3.2 Consensus size: 19
71841711 AGTGTCAGTG
71841721 TCAGGTAACAGAATCAGAA
1 TCAGGTAACAGAATCAGAA
71841740 TCA-G-AACCAGAATCAGAA
1 TCAGGTAA-CAGAATCAGAA
*
71841758 TTAGGTAACAGAATCAGAA
1 TCAGGTAACAGAATCAGAA
71841777 TCAG
1 TCAG
71841781 TATCAGGTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
17 2 0.06
18 14 0.39
19 18 0.50
20 2 0.06
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.17
Consensus pattern (19 bp):
TCAGGTAACAGAATCAGAA
Found at i:71841802 original size:62 final size:62
Alignment explanation
Indices: 71841643--71841807 Score: 222
Period size: 62 Copynumber: 2.7 Consensus size: 62
71841633 AATGAGAATT
** * * * * *
71841643 AGAATCAGAATCAAAATCAGGTGACAGAATCAAAATTAAAATCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
* ** *
71841705 AGAATTAGTGTCAGTGTCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
*
71841767 AGAATCAGAATCAGTATCAGGTAACAGAATTAGAATCAGAA
1 AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAA
71841808 TGTGCATGCA
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 87 1.00
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.20
Consensus pattern (62 bp):
AGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAAC
Found at i:71842363 original size:27 final size:27
Alignment explanation
Indices: 71842314--71842752 Score: 536
Period size: 27 Copynumber: 16.3 Consensus size: 27
71842304 CACGTAAAAT
* * ** *
71842314 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71842341 GGTAATTCTATCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
71842368 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
71842395 AGTACTTCTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
71842422 GGTAATTCTACCATACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
71842449 AGTACTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
71842476 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
71842503 AGTAATTCTATCGTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
71842530 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
71842557 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71842584 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
71842611 GGTATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71842638 GGTAATTCTACCCTACAGGTGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71842665 AGTAATTCTACCCTACAGGGGTTTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71842692 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
71842719 GGTAATTCTTCCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
71842746 GATAATT
1 GGTAATT
71842753 TTGTAAATCG
Statistics
Matches: 350, Mismatches: 62, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 350 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:71842458 original size:81 final size:81
Alignment explanation
Indices: 71842314--71842745 Score: 596
Period size: 81 Copynumber: 5.3 Consensus size: 81
71842304 CACGTAAAAT
* * * * * * * *
71842314 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTATCCTACAGGGGTATTTTAGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTAC
*
71842379 CCTACAGGGGTATTTC
66 CCTACAAGGGTATTTC
* * * * * *
71842395 AGTACTTCTACCCTACAAGGGTATCTCGGTAATTCTACCATACAGGGGTATTTCAGTACTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTAC
71842460 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * * *
71842476 GGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTATCGTACAGGGGTATTTCAGTATTTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTAC
71842541 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * * * *
71842557 GGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTAT
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTAC
71842622 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* * *
71842638 GGTAATTCTACCCTAC-AGGTGTATTTTAGTAATTCTACCCTACAGGGGTTTTTCGGTATTTCTA
1 GGTAATTCTACCCTACAAGG-GTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTA
71842702 CCCTACAAGGGTATTTC
65 CCCTACAAGGGTATTTC
*
71842719 GGTAATTCTTCCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
71842746 GATAATTTTG
Statistics
Matches: 319, Mismatches: 30, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
80 2 0.01
81 314 0.98
82 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTATTTCTAC
CCTACAAGGGTATTTC
Found at i:71842766 original size:27 final size:27
Alignment explanation
Indices: 71842736--71842888 Score: 100
Period size: 27 Copynumber: 5.7 Consensus size: 27
71842726 CTTCCCTACA
*
71842736 AGGGTATTTCGATAATTTTGTAAATCG
1 AGGGTATTTCGATAATTTTATAAATCG
** * * *
71842763 AGGGTAAAAT-GATAATTCTGTAAAT-T
1 AGGGT-ATTTCGATAATTTTATAAATCG
* *
71842789 AGGGGTACTTT-GGTAATTTTATAAGTCG
1 A-GGGTA-TTTCGATAATTTTATAAATCG
* * **
71842817 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCGATAATTTTATAAATCG
71842844 AGGGTATTTC-AGTAATTTTATAAATC-
1 AGGGTATTTCGA-TAATTTTATAAATCG
* *
71842870 AGGGGTATTTTGGTAATTT
1 A-GGGTATTTCGATAATTT
71842889 GGTAAACTAA
Statistics
Matches: 98, Mismatches: 20, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
26 7 0.07
27 88 0.90
28 3 0.03
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTATAAATCG
Found at i:71849468 original size:16 final size:16
Alignment explanation
Indices: 71849455--71849492 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
71849445 AGCTGAAATA
71849455 CCGAAATGCCGAAAAG
1 CCGAAATGCCGAAAAG
*
71849471 TCGAAATGCCGAAAAG
1 CCGAAATGCCGAAAAG
*
71849487 CTGAAA
1 CCGAAA
71849493 AGTCGAAAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.11
Consensus pattern (16 bp):
CCGAAATGCCGAAAAG
Found at i:71849476 original size:24 final size:24
Alignment explanation
Indices: 71849441--71849500 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
71849431 TATGAATCGA
*
71849441 GAAAAG-CTGAAATACCGAAATGCC
1 GAAAAGTC-GAAATACCGAAAAGCC
* *
71849465 GAAAAGTCGAAATGCCGAAAAGCT
1 GAAAAGTCGAAATACCGAAAAGCC
71849489 GAAAAGTCGAAA
1 GAAAAGTCGAAA
71849501 GTATGGCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 31 0.97
25 1 0.03
ACGTcount: A:0.48, C:0.17, G:0.23, T:0.12
Consensus pattern (24 bp):
GAAAAGTCGAAATACCGAAAAGCC
Found at i:71849755 original size:28 final size:28
Alignment explanation
Indices: 71849711--71849825 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
71849701 GTGAGCATGA
* * * *
71849711 ATATGAATGTGACTGGGCCTAACGAGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
71849739 ATATAAATGTGATTGGGGCCCAATGGGCC
1 ATATAAATGTGATT-GGGCCTAATGGGCC
* * *
71849768 ATGTACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
71849797 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
71849825 A
1 A
71849826 GATACAGGTA
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
28 28 0.40
29 40 0.57
30 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:71849798 original size:58 final size:57
Alignment explanation
Indices: 71849724--71849834 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 57
71849714 TGAATGTGAC
*
71849724 TGGGCCTAACGAGCCATATAAATGTGATTGGGGCCCAATGGGCCATG-TACAGGTGATT
1 TGGGCCTAACGAGCCATATAAATATGATT-GGGCCCAATGGGCCA-GATACAGGTGATT
* * * **
71849782 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGAGCCATATAAATATGATTGGGCCCAATGGGCCAGATACAGGT
71849835 ATGTGAATTT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 1 0.02
57 20 0.43
58 25 0.54
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (57 bp):
TGGGCCTAACGAGCCATATAAATATGATTGGGCCCAATGGGCCAGATACAGGTGATT
Found at i:71855322 original size:16 final size:16
Alignment explanation
Indices: 71855287--71855336 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
71855277 ATGAATCAGC
*
71855287 AAATGCC-AAATGCCG
1 AAATGCCAAAAAGCCG
* * *
71855302 AAATGTCGAAAAGCTG
1 AAATGCCAAAAAGCCG
71855318 AAATGCCAAAAAGCCG
1 AAATGCCAAAAAGCCG
71855334 AAA
1 AAA
71855337 GTTTGGCAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
15 6 0.21
16 22 0.79
ACGTcount: A:0.48, C:0.20, G:0.20, T:0.12
Consensus pattern (16 bp):
AAATGCCAAAAAGCCG
Found at i:71855600 original size:29 final size:29
Alignment explanation
Indices: 71855561--71855660 Score: 130
Period size: 29 Copynumber: 3.5 Consensus size: 29
71855551 AATGTGACTA
*
71855561 GGCCTAATGGGCTATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * *
71855590 GGCCTAATGGGCCATATACAGGTGATTTA
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
71855619 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
71855647 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
71855661 GATACAGGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 15 0.25
29 46 0.75
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:71855666 original size:57 final size:58
Alignment explanation
Indices: 71855559--71855669 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
71855549 TGAATGTGAC
* * *
71855559 TAGGCCTAATGGGCTATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TAGGCCTAATGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
* *
71855617 TAGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TAGGCCTAATGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGT
71855670 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 24 0.50
58 24 0.50
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (58 bp):
TAGGCCTAATGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:71863001 original size:22 final size:22
Alignment explanation
Indices: 71862951--71863015 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
71862941 GCTACTTAAT
71862951 CTGATTATGGCTCTGTGCAAAC
1 CTGATTATGGCTCTGTGCAAAC
* * **
71862973 CTAATTATGGCTCTGTGCTATT
1 CTGATTATGGCTCTGTGCAAAC
* *
71862995 TTGATTATGGCTTTGTGCAAA
1 CTGATTATGGCTCTGTGCAAA
71863016 TCGTATTTAC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.40
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCAAAC
Found at i:71866391 original size:13 final size:13
Alignment explanation
Indices: 71866373--71866397 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71866363 TTTAGTTTAA
71866373 TTAGTTAATTAGC
1 TTAGTTAATTAGC
71866386 TTAGTTAATTAG
1 TTAGTTAATTAG
71866398 TTTAATAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (13 bp):
TTAGTTAATTAGC
Found at i:71870109 original size:47 final size:47
Alignment explanation
Indices: 71870031--71870527 Score: 811
Period size: 47 Copynumber: 10.6 Consensus size: 47
71870021 CCCTTCGGGA
* * * * * *
71870031 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71870078 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71870125 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71870172 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71870219 CTTATCACATATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71870267 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71870314 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71870361 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71870409 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71870456 CTTATCACATATATACACTTTCACATTCATCACAT-GGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71870502 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
71870528 CACAATTATC
Statistics
Matches: 425, Mismatches: 19, Indels: 13
0.93 0.04 0.03
Matches are distributed among these distances:
46 98 0.23
47 235 0.55
48 26 0.06
49 66 0.16
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71870311 original size:142 final size:143
Alignment explanation
Indices: 71870031--71870527 Score: 837
Period size: 142 Copynumber: 3.5 Consensus size: 143
71870021 CCCTTCGGGA
* * * * * * * *
71870031 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
71870094 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
71870159 TCGGCTATTAGGC
131 TCGGCCATTAGGC
71870172 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
71870237 ACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
71870301 TCGGCCATTAGGC
131 TCGGCCATTAGGC
71870314 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
71870379 ACTTTCACATTCATCACATCGGCCATTA-GCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
71870443 TTGGCCATTCGGC
131 TCGGCCATTAGGC
71870456 CTTATCACATATATACACTTTCACATTCATCACAT-GGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
71870520 A--TTCACAT
66 ACTTTCACAT
71870528 CACAATTATC
Statistics
Matches: 341, Mismatches: 12, Indels: 8
0.94 0.03 0.02
Matches are distributed among these distances:
139 7 0.02
141 77 0.23
142 222 0.65
143 35 0.10
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:71870459 original size:189 final size:188
Alignment explanation
Indices: 71870031--71870527 Score: 829
Period size: 189 Copynumber: 2.6 Consensus size: 188
71870021 CCCTTCGGGA
* * * * * *
71870031 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
*
71870096 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
71870161 GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71870219 CTTATCACATATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
71870283 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
71870348 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA-GC
129 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71870409 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* *
71870474 TTTCACATTCATCACAT-GGCCATTAGGCCTTATCACATATATATACATTCACAT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
71870528 CACAATTATC
Statistics
Matches: 290, Mismatches: 14, Indels: 10
0.92 0.04 0.03
Matches are distributed among these distances:
188 72 0.25
189 146 0.50
190 36 0.12
191 36 0.12
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71873203 original size:40 final size:40
Alignment explanation
Indices: 71873158--71873478 Score: 439
Period size: 40 Copynumber: 8.1 Consensus size: 40
71873148 CGAATACACG
* * * * *
71873158 TCACCAGCATGATTGCTCTTCAGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * * * *
71873198 ACACCAGCATGGATGCTCTTCAAGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTC-GGGACTTAGCCCGGATACA
* *
71873238 TTACTAGCATGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* **
71873278 TCACTAGTACAAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
71873318 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
71873358 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
71873398 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
71873438 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
71873477 TC
1 TC
71873479 GTCGAGACCT
Statistics
Matches: 252, Mismatches: 27, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
39 5 0.02
40 244 0.97
41 3 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:71875921 original size:49 final size:49
Alignment explanation
Indices: 71875700--71876203 Score: 748
Period size: 47 Copynumber: 10.6 Consensus size: 49
71875690 CCCTTCGGGA
* * * * *
71875700 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71875747 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71875794 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71875841 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71875888 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTTGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71875937 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGGCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71875984 CTTATCAC--ATATATACACTTTCACATTCATCACTTCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
71876031 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGCC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71876080 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
71876129 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
71876178 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
71876204 CACAATTATC
Statistics
Matches: 426, Mismatches: 25, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 229 0.54
49 196 0.46
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:71875956 original size:143 final size:142
Alignment explanation
Indices: 71875700--71876203 Score: 764
Period size: 143 Copynumber: 3.5 Consensus size: 142
71875690 CCCTTCGGGA
* * * * * * * *
71875700 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
71875763 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
71875828 TCGGCTATTAGGC
131 TCGGC-ATTAGGC
71875841 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
71875906 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
71875971 TCGGGCATTAGGC
131 TC-GGCATTAGGC
*
71875984 CTTATCACATATATACACTTTCACATTCATCACTTCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
71876049 ACTTTCACATTCATCACATCGGCCATTAGCCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
* *
71876114 CATTGGCCATTCGGC
129 CATCGG-CATTAGGC
* *
71876129 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
71876194 ACA--TTCACAT
64 ACACTTTCACAT
71876204 CACAATTATC
Statistics
Matches: 335, Mismatches: 20, Indels: 12
0.91 0.05 0.03
Matches are distributed among these distances:
141 47 0.14
143 179 0.53
144 5 0.01
145 49 0.15
147 55 0.16
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCATTAGGC
Found at i:71885760 original size:39 final size:39
Alignment explanation
Indices: 71885717--71885814 Score: 153
Period size: 39 Copynumber: 2.5 Consensus size: 39
71885707 CTGGACATAT
* *
71885717 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCAG-TAATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGAT-ATAA
71885756 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
*
71885795 TTCCAGCATATAGCCTGCGG
1 TTCCAGCACATAGCCTGCGG
71885815 GTCTTTAAGC
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
39 54 0.98
40 1 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATAA
Found at i:71887956 original size:10 final size:10
Alignment explanation
Indices: 71887939--71887997 Score: 82
Period size: 10 Copynumber: 5.9 Consensus size: 10
71887929 TTAAATTCTA
71887939 AAAGATAAAT
1 AAAGATAAAT
*
71887949 ACAGATAAAT
1 AAAGATAAAT
*
71887959 AAAGATAATT
1 AAAGATAAAT
*
71887969 AAAGATAATT
1 AAAGATAAAT
*
71887979 AAGGATAAAT
1 AAAGATAAAT
71887989 AAAGATAAA
1 AAAGATAAA
71887998 AACTAAAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 43 1.00
ACGTcount: A:0.64, C:0.02, G:0.12, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:71887973 original size:30 final size:30
Alignment explanation
Indices: 71887939--71887996 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
71887929 TTAAATTCTA
71887939 AAAGATAAATACA-GATAAATAAAGATAATT
1 AAAGATAAATA-AGGATAAATAAAGATAATT
*
71887969 AAAGATAATTAAGGATAAATAAAGATAA
1 AAAGATAAATAAGGATAAATAAAGATAA
71887997 AAACTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.64, C:0.02, G:0.12, T:0.22
Consensus pattern (30 bp):
AAAGATAAATAAGGATAAATAAAGATAATT
Found at i:71893244 original size:43 final size:43
Alignment explanation
Indices: 71893181--71893331 Score: 166
Period size: 43 Copynumber: 3.5 Consensus size: 43
71893171 TACAATGCCT
*
71893181 ACGTCCCATACGTGGTCTTACATGTAAAT-AAATATCGATGTC
1 ACGTCCCAGACGTGGTCTTACATGTAAATCAAATATCGATGTC
* * *
71893223 ACTGTCCCAGACATGGTCTTACAAG-AAATCAAATA-CGATGCTG
1 AC-GTCCCAGACGTGGTCTTACATGTAAATCAAATATCGATG-TC
* * * *
71893266 ACATCCTAGACGTGGTCTTACATGTAAATCATAA-GTCGATGGC
1 ACGTCCCAGACGTGGTCTTACATGTAAATCA-AATATCGATGTC
71893309 AACGTCCCAGACGTGGTCTTACA
1 -ACGTCCCAGACGTGGTCTTACA
71893332 CGAACACACA
Statistics
Matches: 89, Mismatches: 13, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
42 29 0.33
43 33 0.37
44 27 0.30
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.26
Consensus pattern (43 bp):
ACGTCCCAGACGTGGTCTTACATGTAAATCAAATATCGATGTC
Found at i:71894441 original size:20 final size:20
Alignment explanation
Indices: 71894416--71894453 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
71894406 ATAAATGAAT
*
71894416 ATATCATGTGCATTTCATAC
1 ATATCATGTGCATATCATAC
71894436 ATATCATGTGCATATCAT
1 ATATCATGTGCATATCAT
71894454 GTCAAATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:71894449 original size:11 final size:11
Alignment explanation
Indices: 71894416--71894465 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
71894406 ATAAATGAAT
71894416 ATATCATGTGC
1 ATATCATGTGC
* *
71894427 ATTTCA--TAC
1 ATATCATGTGC
71894436 ATATCATGTGC
1 ATATCATGTGC
71894447 ATATCATGT-C
1 ATATCATGTGC
*
71894457 AAATCATGT
1 ATATCATGT
71894466 ATATCAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
9 7 0.22
10 9 0.28
11 16 0.50
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:71901514 original size:20 final size:20
Alignment explanation
Indices: 71901489--71901526 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
71901479 ATATATGAAT
*
71901489 ATATCATGTGCATTTCATAC
1 ATATCATGTGCATATCATAC
71901509 ATATCATGTGCATATCAT
1 ATATCATGTGCATATCAT
71901527 GTCAAATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (20 bp):
ATATCATGTGCATATCATAC
Found at i:71901522 original size:11 final size:11
Alignment explanation
Indices: 71901489--71901538 Score: 52
Period size: 11 Copynumber: 4.8 Consensus size: 11
71901479 ATATATGAAT
71901489 ATATCATGTGC
1 ATATCATGTGC
* *
71901500 ATTTCA--TAC
1 ATATCATGTGC
71901509 ATATCATGTGC
1 ATATCATGTGC
71901520 ATATCATGT-C
1 ATATCATGTGC
*
71901530 AAATCATGT
1 ATATCATGT
71901539 ATATCAAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
9 7 0.22
10 9 0.28
11 16 0.50
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (11 bp):
ATATCATGTGC
Found at i:71902628 original size:18 final size:20
Alignment explanation
Indices: 71902605--71902651 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
71902595 TTTCGGCAAA
71902605 AGTAGTGAT-GGAA-AAAAG
1 AGTAGTGATGGGAAGAAAAG
*
71902623 AGTAGTAGGTGGGAAGAAAAG
1 AGTAGT-GATGGGAAGAAAAG
*
71902644 AATAGTGA
1 AGTAGTGA
71902652 ACTGGTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 6 0.26
19 2 0.09
20 5 0.22
21 10 0.43
ACGTcount: A:0.47, C:0.00, G:0.36, T:0.17
Consensus pattern (20 bp):
AGTAGTGATGGGAAGAAAAG
Found at i:71917010 original size:47 final size:47
Alignment explanation
Indices: 71916956--71917244 Score: 416
Period size: 47 Copynumber: 6.1 Consensus size: 47
71916946 TTATGATTTT
** * *
71916956 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
71917003 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--TATATAT--GTGATAAGGCCGAATGGCCA
** *
71917054 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
71917101 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
71917148 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
71917195 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
71917242 ATG
1 ATG
71917245 CGAAATGTGT
Statistics
Matches: 221, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 173 0.78
49 11 0.05
51 37 0.17
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:71917354 original size:46 final size:46
Alignment explanation
Indices: 71917218--71917359 Score: 203
Period size: 46 Copynumber: 3.1 Consensus size: 46
71917208 GAACATGTAT
* *
71917218 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
71917264 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * * *
71917310 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATGT
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
71917356 ATAT
1 ATAT
71917360 ATATATTGTG
Statistics
Matches: 85, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.35, C:0.08, G:0.30, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:71918890 original size:40 final size:39
Alignment explanation
Indices: 71918836--71919192 Score: 482
Period size: 40 Copynumber: 8.9 Consensus size: 39
71918826 ATTGAGAGTT
*
71918836 ATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTG
* * * *
71918876 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTA
1 ATATATCCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTG
* * * *
71918916 ATATGTTCGGGCTAAGTTCTGGAGAGCATTCATGCTAGTG
1 ATATATCCGGGCTAAGTTC-GAAGAGCATTCGTGCTAGTG
71918956 ATATATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTC-GAAGAGCATTCGTGCTAGTG
71918996 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTT-CGAAGAGCATTCGTGCTAGTG
71919036 ATATATCCGGGCTAAGTTCGGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTTC-GAAGAGCATTCGTGCTAGTG
71919076 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTT-CGAAGAGCATTCGTGCTAGTG
* * *
71919116 ATATAACCGGGCTAAGTCCCGAAGAGCAATCGTGCTAGTG
1 ATATATCCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTG
* ** *
71919156 ATATATCCGGGTTAAACCTCGAAG-GCATTCATGCTAG
1 ATATATCCGGGCT-AAGTTCGAAGAGCATTCGTGCTAG
71919193 AATTATGAGG
Statistics
Matches: 286, Mismatches: 25, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
39 13 0.05
40 269 0.94
41 4 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
ATATATCCGGGCTAAGTTCGAAGAGCATTCGTGCTAGTG
Found at i:71919049 original size:120 final size:120
Alignment explanation
Indices: 71918836--71919192 Score: 533
Period size: 120 Copynumber: 3.0 Consensus size: 120
71918826 ATTGAGAGTT
* *
71918836 ATATATCCGGGCTAAG-TCTCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
1 ATATATCCGGGCTAAGTTCT-GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAG
* * * *
71918900 AGCATTCGTGCTGGTAATATGTTCGGGCTAAGTTCTGG-AGAGCATTCATGCTAGTG
65 AGCATTCGTGCTAGTGATATATCCGGGCTAAGTTC-GGAAGAGCATTCATGCTAGTG
*
71918956 ATATATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTTCCGAAGA
1 ATATATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGA
*
71919021 GCATTCGTGCTAGTGATATATCCGGGCTAAGTTCGGAAGAGCATTCGTGCTAGTG
66 GCATTCGTGCTAGTGATATATCCGGGCTAAGTTCGGAAGAGCATTCATGCTAGTG
* *
71919076 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAACCGGGCTAAGTCCCGAAGA
1 ATATATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGA
* * **
71919141 GCAATCGTGCTAGTGATATATCCGGGTTAAACCTC-GAAG-GCATTCATGCTAG
66 GCATTCGTGCTAGTGATATATCCGGGCT-AAGTTCGGAAGAGCATTCATGCTAG
71919193 AATTATGAGG
Statistics
Matches: 218, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
119 14 0.06
120 197 0.90
121 7 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (120 bp):
ATATATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGA
GCATTCGTGCTAGTGATATATCCGGGCTAAGTTCGGAAGAGCATTCATGCTAGTG
Found at i:71919288 original size:57 final size:57
Alignment explanation
Indices: 71919198--71919332 Score: 150
Period size: 57 Copynumber: 2.4 Consensus size: 57
71919188 GCTAGAATTA
*
71919198 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
* ** * * *
71919255 TGAGGCACTAG-GTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACT-GTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGT-AGT
*
71919312 TG-GGCACTGTGTATGCGAAGT
1 TGAGGCACTGTGTGTGC-AAGT
71919333 GTGTTTCATG
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
55 1 0.02
56 11 0.17
57 50 0.77
58 3 0.05
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.27
Consensus pattern (57 bp):
TGAGGCACTGTGTGTGCAAGTTCTCCAACCGAGCACTATGTGTGCCAAATCAGTAGT
Found at i:71922905 original size:47 final size:47
Alignment explanation
Indices: 71922848--71923129 Score: 377
Period size: 47 Copynumber: 5.9 Consensus size: 47
71922838 TTAGGATTTT
* * * * * *
71922848 ATGTGGTGAATTTGAATATGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
71922895 ATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG--CATATAT--GTGATAAGGCCGAATGGCCA
* *
71922946 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
71922993 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
71923040 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
71923087 ATGTGATGAATGTGAACACGTATATATGTGGTAA-GCCAGAATG
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCC-GAATG
71923130 TCTAATGCGA
Statistics
Matches: 213, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
46 3 0.01
47 162 0.76
49 11 0.05
51 37 0.17
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:71922999 original size:22 final size:22
Alignment explanation
Indices: 71922972--71923046 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
71922962 CATGCGTATG
71922972 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
71922994 TGTGATGAATG-TGAACAT-G-CATA
1 TGTGAT-AAGGCCG-A-ATGGCCA-A
71923017 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
71923041 TGTGAT
1 TGTGAT
71923047 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:71923166 original size:46 final size:47
Alignment explanation
Indices: 71923110--71923245 Score: 188
Period size: 46 Copynumber: 3.0 Consensus size: 47
71923100 GAACACGTAT
* *
71923110 ATATGTGGT-AAGCCAGAATGTCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCAGAATGGCTAATGTGAAATGTGTATGAGATAG
* * *
71923156 ATATGAGGTAAAGCC-GAATGGCTAATGTGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAGAATGGCTAATGTGAAATGTGTATGAGATAG
* *
71923202 ATATGTGGTAAAGCCA-AATGGCTAATGTGAGATATGTATGAGAT
1 ATATGTGGTAAAGCCAGAATGGCTAATGTGAAATGTGTATGAGAT
71923246 GTGTATATAT
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
46 74 0.94
47 5 0.06
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.27
Consensus pattern (47 bp):
ATATGTGGTAAAGCCAGAATGGCTAATGTGAAATGTGTATGAGATAG
Found at i:71926078 original size:46 final size:44
Alignment explanation
Indices: 71926021--71926138 Score: 132
Period size: 46 Copynumber: 2.6 Consensus size: 44
71926011 GAGAGCTAGT
*
71926021 GTAAGACATGTCTGGGACATGCTTCAGCCT-CGAGATGTAAGCCAGA
1 GTAAGACATGTCTGGGACATGCATCAG-CTACGAG-T-TAAGCCAGA
* * *
71926067 GTAAGACATGTCTAGGACATGCATCAGCTACGAGTTAAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCAGCTACGAGTTAAGCCAGA
71926111 GTAAGACCATGT-TCGGGACATGGCATCA
1 GTAAGA-CATGTCT-GGGACAT-GCATCA
71926139 ACATCCTATC
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
44 14 0.22
45 14 0.22
46 35 0.56
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (44 bp):
GTAAGACATGTCTGGGACATGCATCAGCTACGAGTTAAGCCAGA
Found at i:71930397 original size:47 final size:47
Alignment explanation
Indices: 71930328--71930653 Score: 544
Period size: 47 Copynumber: 6.9 Consensus size: 47
71930318 GATGAAGTGA
71930328 TGTTAAATTTGTTCTTACTATTTCCGGATAAGTTACTTAGTTAAGCT
1 TGTTAAATTTGTTCTTACTATTTCCGGATAAGTTACTTAGTTAAGCT
* * *
71930375 TGTTAAATTTGTTCTTAATATTTTCGGATAAGTTACTAAGTTAAGCT
1 TGTTAAATTTGTTCTTACTATTTCCGGATAAGTTACTTAGTTAAGCT
* *
71930422 TGTTAAATTTCTTCTTACTATTTCCGGATAAGTTACTTAGTTAAGCA
1 TGTTAAATTTGTTCTTACTATTTCCGGATAAGTTACTTAGTTAAGCT
*
71930469 TGTTAAATTTGTTCTTACTATTTCTGGATAAGTTACTTAGTTAAGCT
1 TGTTAAATTTGTTCTTACTATTTCCGGATAAGTTACTTAGTTAAGCT
* *
71930516 TGTTAAATTTGTTCTTAATATTTCTGGATAAGTTACTTAGTTAAGCT
1 TGTTAAATTTGTTCTTACTATTTCCGGATAAGTTACTTAGTTAAGCT
* *
71930563 TGTTAAATTTGTTATTACTATTTCTGGATAAGTTACTTAGTTAAGCT
1 TGTTAAATTTGTTCTTACTATTTCCGGATAAGTTACTTAGTTAAGCT
* *
71930610 TGTTAAATTTGTTCTTAATATATCCGGATAAGTTACTTAGTTAA
1 TGTTAAATTTGTTCTTACTATTTCCGGATAAGTTACTTAGTTAA
71930654 AGAAAATAAT
Statistics
Matches: 261, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 261 1.00
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.47
Consensus pattern (47 bp):
TGTTAAATTTGTTCTTACTATTTCCGGATAAGTTACTTAGTTAAGCT
Found at i:71931231 original size:45 final size:45
Alignment explanation
Indices: 71931167--71931344 Score: 302
Period size: 45 Copynumber: 4.0 Consensus size: 45
71931157 TATCGTACAG
71931167 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
*
71931212 TACTATTCGGACCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* *
71931257 TACTATTCGGGCCTTTGAGCCTAGCAGGCGATAATACCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
* * *
71931302 AACTATTCGGGCCTTTGAGCCTAACAGGCTATAATGCTGGTGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
71931345 AATGATATCA
Statistics
Matches: 124, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 124 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
Found at i:71940367 original size:27 final size:27
Alignment explanation
Indices: 71940286--71940377 Score: 77
Period size: 27 Copynumber: 3.6 Consensus size: 27
71940276 TATAATGACC
* * * *
71940286 ATTTTAAACTCTTTTTATACATCATTT
1 ATTTTAAATTATTTTTAGATATCATTT
* * *
71940313 ACTTTAAA--A-TTTTATG-TATTATTC
1 ATTTTAAATTATTTTTA-GATATCATTT
71940337 ATTTTAAATTATTTTTAGATATCATTT
1 ATTTTAAATTATTTTTAGATATCATTT
71940364 ATTTTAAATT-TTTT
1 ATTTTAAATTATTTT
71940378 CCATATGTGA
Statistics
Matches: 51, Mismatches: 9, Indels: 11
0.72 0.13 0.15
Matches are distributed among these distances:
24 17 0.33
26 6 0.12
27 28 0.55
ACGTcount: A:0.32, C:0.08, G:0.02, T:0.59
Consensus pattern (27 bp):
ATTTTAAATTATTTTTAGATATCATTT
Found at i:71940601 original size:26 final size:26
Alignment explanation
Indices: 71940572--71940659 Score: 106
Period size: 26 Copynumber: 3.4 Consensus size: 26
71940562 CTTTTATACG
*
71940572 TCATTTTAAATTGTTTTATAAATTAA
1 TCATTTTAAATTGTTTTATATATTAA
* *
71940598 TCATTTTAGATTGTTTTATATATTATT
1 TCATTTTAAATTGTTTTATATATTA-A
* *
71940625 TTATTTTAAATTGTTTTGTATATTAA
1 TCATTTTAAATTGTTTTATATATTAA
*
71940651 T-TTTTTAAA
1 TCATTTTAAA
71940660 AAGTTATTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
25 7 0.13
26 24 0.45
27 22 0.42
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (26 bp):
TCATTTTAAATTGTTTTATATATTAA
Found at i:71940775 original size:41 final size:40
Alignment explanation
Indices: 71940692--71940776 Score: 93
Period size: 41 Copynumber: 2.1 Consensus size: 40
71940682 GCTTTTGTAA
* *
71940692 TATCTATTTAAAATTTTTTTTATGTATTATTTGTTTAGAAT
1 TATCTATTTAAAATTTTTTATATGTATTATTTATTTA-AAT
*
71940733 TATCTATTTTAAATTATTTTATAT-TATTTATTTCATTT-AAT
1 TATCTATTTAAAATT-TTTTATATGTA-TTATTT-ATTTAAAT
71940774 TAT
1 TAT
71940777 TGTTAATGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
41 22 0.58
42 13 0.34
43 3 0.08
ACGTcount: A:0.31, C:0.04, G:0.04, T:0.62
Consensus pattern (40 bp):
TATCTATTTAAAATTTTTTATATGTATTATTTATTTAAAT
Found at i:71940919 original size:25 final size:24
Alignment explanation
Indices: 71940891--71940937 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
71940881 GTTGTATTCA
*
71940891 TATACTTTTGTTCCATGCTCATTAT
1 TATACTTTTATTCCATG-TCATTAT
*
71940916 TATACTTTTATTTCATGTCATT
1 TATACTTTTATTCCATGTCATT
71940938 GCATCGTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 5 0.25
25 15 0.75
ACGTcount: A:0.21, C:0.17, G:0.06, T:0.55
Consensus pattern (24 bp):
TATACTTTTATTCCATGTCATTAT
Found at i:71947652 original size:45 final size:45
Alignment explanation
Indices: 71947480--71947656 Score: 211
Period size: 45 Copynumber: 4.0 Consensus size: 45
71947470 CCAAATTCAT
* * * *
71947480 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-ATA-TCCTT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-GTC
* * * *
71947522 TCACCAGCATTATAGCCTGCTAGGCTCGAAA-GCCTGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTGTC
*
71947567 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTC
*
71947612 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTC
71947657 GTACGATAAT
Statistics
Matches: 116, Mismatches: 13, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
42 10 0.09
43 14 0.12
44 7 0.06
45 84 0.72
46 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTGTC
Found at i:71950777 original size:131 final size:131
Alignment explanation
Indices: 71950551--71951102 Score: 788
Period size: 131 Copynumber: 4.2 Consensus size: 131
71950541 GTAGTGGAGT
* **
71950551 AGATCAAAGACGAAAAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGCCACCATCCTAT
1 AGATCGAAGACGACGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGCCACCATCCTAT
* *
71950616 CTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATCTTGTCTCCCTAAAGTTGCAGTGGAA
66 CTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAGTGGAA
71950681 C
131 C
* *
71950682 AGATCGAAGACGACGAATCTTGTCTCCCTAACCAGAAGTGGAGCAAATTTAAGCCACCATCCTAT
1 AGATCGAAGACGACGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGCCACCATCCTAT
* * *
71950747 CTCCTTAAGCAGTAGTGGAGTATGCTAAAGATTGTAGATCTTGTCTCCCTGAAGTTGCAGTGGAA
66 CTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAGTGGAA
71950812 C
131 C
* * * *
71950813 AGATCGAAGACGGCAAATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAGCCACCATCCTAT
1 AGATCGAAGACGACGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGCCACCATCCTAT
* *
71950878 CTCCCTAAGCAGTAGTGGAGTAGACTAAAGATTGTAGATCTTGACTCCCTGAAA-TTGCAGTGGA
66 CTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTGTCTCCCT-AAAGTTGCAGTGGA
71950942 AC
130 AC
** * * *
71950944 AGATCGAAGACGGTGAATCTTGTCTCCCTATCCAGTAGTGAAGC-G-TATTATGCCACCATCCTA
1 AGATCGAAGACGACGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGAT-TTAAGCCACCATCCTA
* * * * ** *
71951007 TCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTTAGATTTTGTCTAACTGAAGTTGCAGTGGA
65 TCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAGTGGA
*
71951072 AT
130 AC
71951074 AGATCGAAGAC-AGCGAATCTTGTCTCCCT
1 AGATCGAAGACGA-CGAATCTTGTCTCCCT
71951103 GAAGTTGCAG
Statistics
Matches: 377, Mismatches: 40, Indels: 9
0.88 0.09 0.02
Matches are distributed among these distances:
129 3 0.01
130 96 0.25
131 276 0.73
132 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (131 bp):
AGATCGAAGACGACGAATCTTGTCTCCCTAACCAGTAGTGGAGCAGATTTAAGCCACCATCCTAT
CTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGTAGATCTTGTCTCCCTAAAGTTGCAGTGGAA
C
Found at i:71951125 original size:175 final size:176
Alignment explanation
Indices: 71950915--71951278 Score: 487
Period size: 176 Copynumber: 2.1 Consensus size: 176
71950905 AAGATTGTAG
* * ** *
71950915 ATCTTGACTCCCTGAAATTGCAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTATCCAGT
1 ATCTTGTCTCCCTGAAATTGCAGTGAAACAGATCGAAGACGACGAATCTTGTCTCCCTAACCAGT
* * * **
71950980 AGTGAAGCGTA-TTATGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTTA
66 AGTGAAGCGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCA
** * * * * *
71951044 GATTTTGTCTAACTGAAGTTGCAGTGGAATAGATCGAAGACAGCGA
131 GAGCTTGTCTAACTGAAATTACAGCGGAACAGATCGAAGACAGCAA
* * * *
71951090 ATCTTGTCTCCCTGAAGTTGCAGTGAAATAGATCGAAGACGACGAATCTTGTCTCCTTAAGCAGT
1 ATCTTGTCTCCCTGAAATTGCAGTGAAACAGATCGAAGACGACGAATCTTGTCTCCCTAACCAGT
*
71951155 AGTGGAGCGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCA
66 AGTGAAGCGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCA
** **
71951220 GAGCTTGTCTCCCTGAAATTACAGCGGAACAGATCGAAGATGGCAA
131 GAGCTTGTCTAACTGAAATTACAGCGGAACAGATCGAAGACAGCAA
71951266 ATCTTGTCTCCCT
1 ATCTTGTCTCCCT
71951279 AACCAGTAGT
Statistics
Matches: 162, Mismatches: 26, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
175 65 0.40
176 97 0.60
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (176 bp):
ATCTTGTCTCCCTGAAATTGCAGTGAAACAGATCGAAGACGACGAATCTTGTCTCCCTAACCAGT
AGTGAAGCGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCA
GAGCTTGTCTAACTGAAATTACAGCGGAACAGATCGAAGACAGCAA
Found at i:71951144 original size:45 final size:45
Alignment explanation
Indices: 71951056--71951145 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
71951046 TTTTGTCTAA
*
71951056 CTGAAGTTGCAGTGGAATAGATCGAAGACAGCGAATCTTGTCTCC
1 CTGAAGTTGCAGTGAAATAGATCGAAGACAGCGAATCTTGTCTCC
71951101 CTGAAGTTGCAGTGAAATAGATCGAAGAC-GACGAATCTTGTCTCC
1 CTGAAGTTGCAGTGAAATAGATCGAAGACAG-CGAATCTTGTCTCC
71951146 TTAAGCAGTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
44 1 0.02
45 42 0.98
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (45 bp):
CTGAAGTTGCAGTGAAATAGATCGAAGACAGCGAATCTTGTCTCC
Found at i:71951227 original size:131 final size:131
Alignment explanation
Indices: 71951092--71951409 Score: 447
Period size: 131 Copynumber: 2.4 Consensus size: 131
71951082 GACAGCGAAT
* * * * *
71951092 CTTGTCTCCCTGAAGTTGCAGTGAAATAGATCGAAGACGACGAATCTTGTCTCCTTAAGCAGTAG
1 CTTGTCTCCCTGAAGTTGCAGTGGAATAGATCGAAGATGGCGAATCTTGTCTCCCTAACCAGTAG
* *
71951157 TGGAGCGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCAGA
66 TGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAGA
71951222 G
131 G
* * * * *
71951223 CTTGTCTCCCTGAAATTACAGCGGAACAGATCGAAGATGGCAAATCTTGTCTCCCTAACCAGTAG
1 CTTGTCTCCCTGAAGTTGCAGTGGAATAGATCGAAGATGGCGAATCTTGTCTCCCTAACCAGTAG
* * * **
71951288 TGGAGCATATTTAAGCCACCATTCTATCTCCCTAAGTAGTAGTGGAGTAGGCTAAAGATTTTAGA
66 TGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAGA
*
71951353 T
131 G
* * *
71951354 TTTGTCTCACTGAAGTTGCAATGGAATAGATCGAAGATGGCGAATCTTGTCTCCCT
1 CTTGTCTCCCTGAAGTTGCAGTGGAATAGATCGAAGATGGCGAATCTTGTCTCCCT
71951410 GAAGTTGCAG
Statistics
Matches: 161, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
131 161 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (131 bp):
CTTGTCTCCCTGAAGTTGCAGTGGAATAGATCGAAGATGGCGAATCTTGTCTCCCTAACCAGTAG
TGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAGA
G
Found at i:71951432 original size:176 final size:176
Alignment explanation
Indices: 71951223--71951585 Score: 485
Period size: 176 Copynumber: 2.1 Consensus size: 176
71951213 GATTGCAGAG
* * *
71951223 CTTGTCTCCCTGAAATTACAGCGGAACAGATCGAAGATGGCAAATCTTGTCTCCCTAACCAGTAG
1 CTTGTCTCCCTGAAATTACAGCGAAACAGATCGAAGACGACAAATCTTGTCTCCCTAACCAGTAG
* * * **
71951288 TGGAGCATATTTAAGCCACCATTC-TATCTCCCTAAGTAGTAGTGGAGTAGGCTAAAGATTTTAG
66 TGGAGCAGATTTAAGCCACCA-TCGTATCCCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAG
** * * *
71951352 ATTTTGTCTCACTGAAGTTGCAATGGAATAGATCGAAGATGGCGAAT
130 AGCTTGTCTCACTGAAGTTACAATGGAACAGATCGAAGACGGCGAAT
* * * * * *
71951399 CTTGTCTCCCTGAAGTTGCAGTGAAATAGATCGAAGACGACAAATCTTGTCTCCTTAAGCAGTAG
1 CTTGTCTCCCTGAAATTACAGCGAAACAGATCGAAGACGACAAATCTTGTCTCCCTAACCAGTAG
* * *
71951464 TGGAGCGGATTTAAGCCACCATCGTATCCCCCTAAGCAGTAGTGGAGTAGGCTGAAGCTTGCAGA
66 TGGAGCAGATTTAAGCCACCATCGTATCCCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAGA
* * *
71951529 GCTTGTCTCTCTGAAGTTACAGTGGAACAGATTGAAGACGGCGAAT
131 GCTTGTCTCACTGAAGTTACAATGGAACAGATCGAAGACGGCGAAT
71951575 CTTGTCTCCCT
1 CTTGTCTCCCT
71951586 AACCACTAGT
Statistics
Matches: 161, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
175 2 0.01
176 159 0.99
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (176 bp):
CTTGTCTCCCTGAAATTACAGCGAAACAGATCGAAGACGACAAATCTTGTCTCCCTAACCAGTAG
TGGAGCAGATTTAAGCCACCATCGTATCCCCCTAAGCAGTAGTGGAGTAGGCTAAAGATTGCAGA
GCTTGTCTCACTGAAGTTACAATGGAACAGATCGAAGACGGCGAAT
Found at i:71951438 original size:307 final size:307
Alignment explanation
Indices: 71950784--71951716 Score: 1472
Period size: 307 Copynumber: 3.0 Consensus size: 307
71950774 AAGATTGTAG
* * * *
71950784 ATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCAAATCTTGTCTCCCTAAGCAGT
1 ATCTTGTCTCCCTGAAGTTGCAGTGAAATAGATCGAAGACGACAAATCTTGTCTCCTTAAGCAGT
** * * *
71950849 AGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGACTAAAGATTGTA
66 AGTGGAGCGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCA
* * * * *
71950914 GATCTTGACTCCCTGAAATTGCAGTGGAACAGATCGAAGACGGTGAATCTTGTCTCCCTATCCAG
131 GAGCTTGTCTCCCTGAAATTACAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAG
* * * * *
71950979 TAGTGAAGCGTA-TTATGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTTT
196 TAGTGGAGCATATTTAAGCCACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGCTGAAGATTTT
* *
71951043 AGATTTTGTCTAACTGAAGTTGCAGTGGAATAGATCGAAGACAGCGA
261 AGATTTTGTCTCACTGAAGTTGCAGTGGAATAGATCGAAGACGGCGA
*
71951090 ATCTTGTCTCCCTGAAGTTGCAGTGAAATAGATCGAAGACGACGAATCTTGTCTCCTTAAGCAGT
1 ATCTTGTCTCCCTGAAGTTGCAGTGAAATAGATCGAAGACGACAAATCTTGTCTCCTTAAGCAGT
71951155 AGTGGAGCGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCA
66 AGTGGAGCGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCA
* * *
71951220 GAGCTTGTCTCCCTGAAATTACAGCGGAACAGATCGAAGATGGCAAATCTTGTCTCCCTAACCAG
131 GAGCTTGTCTCCCTGAAATTACAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAG
* * *
71951285 TAGTGGAGCATATTTAAGCCACCATTCTATCTCCCTAAGTAGTAGTGGAGTAGGCTAAAGATTTT
196 TAGTGGAGCATATTTAAGCCACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGCTGAAGATTTT
* *
71951350 AGATTTTGTCTCACTGAAGTTGCAATGGAATAGATCGAAGATGGCGA
261 AGATTTTGTCTCACTGAAGTTGCAGTGGAATAGATCGAAGACGGCGA
71951397 ATCTTGTCTCCCTGAAGTTGCAGTGAAATAGATCGAAGACGACAAATCTTGTCTCCTTAAGCAGT
1 ATCTTGTCTCCCTGAAGTTGCAGTGAAATAGATCGAAGACGACAAATCTTGTCTCCTTAAGCAGT
* * *
71951462 AGTGGAGCGGATTTAAGCCACCATCGTATCCCCCTAAGCAGTAGTGGAGTAGGCTGAAGCTTGCA
66 AGTGGAGCGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCA
* * * *
71951527 GAGCTTGTCTCTCTGAAGTTACAGTGGAACAGATTGAAGACGGCGAATCTTGTCTCCCTAACCAC
131 GAGCTTGTCTCCCTGAAATTACAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAG
* *
71951592 TAGTGGAGCAGATTTAAGCCACCATCCTATCTTCCTAAGAAGTAGTGGAGTAGGCTGAAGATTTT
196 TAGTGGAGCATATTTAAGCCACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGCTGAAGATTTT
* * * *
71951657 AGATTTTGTCTCCCTGAAGTTGCAGTGGAACAAATCGAAGACGGTGA
261 AGATTTTGTCTCACTGAAGTTGCAGTGGAATAGATCGAAGACGGCGA
71951704 ATCTTGTCTCCCT
1 ATCTTGTCTCCCT
71951717 AACCAGTAGT
Statistics
Matches: 575, Mismatches: 51, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
306 187 0.33
307 388 0.67
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (307 bp):
ATCTTGTCTCCCTGAAGTTGCAGTGAAATAGATCGAAGACGACAAATCTTGTCTCCTTAAGCAGT
AGTGGAGCGGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGCA
GAGCTTGTCTCCCTGAAATTACAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAG
TAGTGGAGCATATTTAAGCCACCATCCTATCTCCCTAAGAAGTAGTGGAGTAGGCTGAAGATTTT
AGATTTTGTCTCACTGAAGTTGCAGTGGAATAGATCGAAGACGGCGA
Found at i:71951452 original size:45 final size:45
Alignment explanation
Indices: 71951355--71951452 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 45
71951345 ATTTTAGATT
* * * * *
71951355 TTGTCTCACTGAAGTTGCAATGGAATAGATCGAAGATGGCGAATC
1 TTGTCTCCCTGAAGTTGCAATGAAATAGATCGAAGACGACAAATC
*
71951400 TTGTCTCCCTGAAGTTGCAGTGAAATAGATCGAAGACGACAAATC
1 TTGTCTCCCTGAAGTTGCAATGAAATAGATCGAAGACGACAAATC
71951445 TTGTCTCC
1 TTGTCTCC
71951453 TTAAGCAGTA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (45 bp):
TTGTCTCCCTGAAGTTGCAATGAAATAGATCGAAGACGACAAATC
Found at i:71951576 original size:131 final size:131
Alignment explanation
Indices: 71951397--71951809 Score: 583
Period size: 131 Copynumber: 3.2 Consensus size: 131
71951387 AAGATGGCGA
* * * * * *
71951397 ATCTTGTCTCCCTGAAGTTGCAGTGAAATAGATCGAAGACGACAAATCTTGTCTCCTTAAGCAGT
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAGT
* * * * *
71951462 AGTGGAGCGGATTTAAGCCACCATCGTATCCCCCTAAGCAGTAGTGGAGTAGGCTGAAGCTTGCA
66 AGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTA
71951527 G
131 G
* * * * *
71951528 AGCTTGTCTCTCTGAAGTTACAGTGGAACAGATTGAAGACGGCGAATCTTGTCTCCCTAACCACT
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAGT
* * *
71951593 AGTGGAGCAGATTTAAGCCACCATCCTATCTTCCTAAGAAGTAGTGGAGTAGGCTGAAGATTTTA
66 AGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTA
71951658 G
131 G
* * *
71951659 ATTTTGTCTCCCTGAAGTTGCAGTGGAACAAATCGAAGACGGTGAATCTTGTCTCCCTAACCAGT
1 ATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAGT
* * * *
71951724 AGTGGAGCAGATCTAGGCCACCATCCTATCTGCCTAAGCAGTAGTGGAGTAGGCTGAGGATTGTA
66 AGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTA
71951789 G
131 G
*
71951790 ATCTTGTCTCCTTGAAGTTG
1 ATCTTGTCTCCCTGAAGTTG
71951810 AAAGAGCAGA
Statistics
Matches: 247, Mismatches: 35, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
131 247 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (131 bp):
ATCTTGTCTCCCTGAAGTTGCAGTGGAACAGATCGAAGACGGCGAATCTTGTCTCCCTAACCAGT
AGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGATTGTA
G
Found at i:71958703 original size:39 final size:38
Alignment explanation
Indices: 71958660--71958797 Score: 159
Period size: 39 Copynumber: 3.5 Consensus size: 38
71958650 CCGGACATAT
* *
71958660 TTCCAGCGCGTAGCCTGCGGACCTTAAGTCCGGTTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCGG-TATAA
*
71958699 TTCCAGCACATAGCTTGCGGACCTTAAGTCCGAGTATAA
1 TTCCAGCACATAGCCTGCGGACCTTAAGTCCG-GTATAA
* * * *
71958738 TTCCAGCATATAGCCTGCAGGTCTTTAAGCCCGGATATAA
1 TTCCAGCACATAGCCTGC-GGACCTTAAGTCCGG-TATAA
* *
71958778 TTCTAGCATATAGCCTGCGG
1 TTCCAGCACATAGCCTGCGG
71958798 GTCTTTAAGC
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
39 53 0.61
40 34 0.39
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (38 bp):
TTCCAGCACATAGCCTGCGGACCTTAAGTCCGGTATAA
Found at i:71958777 original size:40 final size:39
Alignment explanation
Indices: 71958670--71958814 Score: 166
Period size: 40 Copynumber: 3.7 Consensus size: 39
71958660 TTCCAGCGCG
* * *
71958670 TAGCCTGCGGACCTTAAGTCCGGTTATAATTCCAGCACA
1 TAGCCTGCGGACCTTAAGCCCGGATATAATTCCAGCATA
* *
71958709 TAGCTTGCGGACCTTAAGTCC-GAGTATAATTCCAGCATA
1 TAGCCTGCGGACCTTAAGCCCGGA-TATAATTCCAGCATA
* * *
71958748 TAGCCTGCAGGTCTTTAAGCCCGGATATAATTCTAGCATA
1 TAGCCTGC-GGACCTTAAGCCCGGATATAATTCCAGCATA
* *
71958788 TAGCCTGCGGGTCTTTAAGCCCGGATA
1 TAGCCTGC-GGACCTTAAGCCCGGATA
71958815 CACATCAAAT
Statistics
Matches: 94, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 41 0.44
40 50 0.53
41 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.28
Consensus pattern (39 bp):
TAGCCTGCGGACCTTAAGCCCGGATATAATTCCAGCATA
Found at i:71964847 original size:125 final size:126
Alignment explanation
Indices: 71964608--71964850 Score: 407
Period size: 125 Copynumber: 1.9 Consensus size: 126
71964598 ATTTTTGCCT
71964608 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
* * **
71964673 CTTCAAATTCTTTACATACCGAACATTGCCTTTATTTTGAAAATTTTTGAGAGTGAACTGG
66 CTTCAAATTCTTTAAATACCGAACATTGCCTTTATTTTAAAAAAATTTGAGAGTGAACTGG
* * *
71964734 TAAGAGGATATTCGAATATTCAAGACAAACAAATAAAGCGAAACCCAGTACG-TAGGGCATGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
*
71964798 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTAAAAAAATTTGAGAG
66 CTTCAAATTCTTTAAATACCGAACATTGCCTTTATTTTAAAAAAATTTGAGAG
71964851 AAGATCAATG
Statistics
Matches: 109, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
125 59 0.54
126 50 0.46
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (126 bp):
TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
CTTCAAATTCTTTAAATACCGAACATTGCCTTTATTTTAAAAAAATTTGAGAGTGAACTGG
Found at i:71964990 original size:13 final size:12
Alignment explanation
Indices: 71964949--71964998 Score: 57
Period size: 13 Copynumber: 4.1 Consensus size: 12
71964939 CTAACCATAT
*
71964949 ATAAATAATAAA
1 ATAATTAATAAA
71964961 ATAA-TAATAATA
1 ATAATTAATAA-A
*
71964973 GTAATTAATAGAA
1 ATAATTAATA-AA
71964986 ATAATTAATAAA
1 ATAATTAATAAA
71964998 A
1 A
71964999 CAACAGTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 6 0.18
12 11 0.33
13 15 0.45
14 1 0.03
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATTAATAAA
Found at i:71965096 original size:21 final size:21
Alignment explanation
Indices: 71965062--71965112 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
71965052 TAATAATATT
*
71965062 AAAAACATGATGATAATAACA
1 AAAAATATGATGATAATAACA
* *
71965083 AAAAATATGTTGATGATAACA
1 AAAAATATGATGATAATAACA
**
71965104 TTAAATATG
1 AAAAATATG
71965113 GGGGATAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.55, C:0.06, G:0.12, T:0.27
Consensus pattern (21 bp):
AAAAATATGATGATAATAACA
Found at i:71965323 original size:14 final size:14
Alignment explanation
Indices: 71965304--71965334 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
71965294 ATATATTTAC
*
71965304 ATAATAAATATATA
1 ATAATAAATAAATA
71965318 ATAATAAATAAATA
1 ATAATAAATAAATA
71965332 ATA
1 ATA
71965335 TAATAATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATAAATAAATA
Found at i:71965335 original size:19 final size:18
Alignment explanation
Indices: 71965306--71965342 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
71965296 ATATTTACAT
71965306 AATAAATATATAATAATA
1 AATAAATATATAATAATA
71965324 AATAAATAATATAATAATA
1 AATAAAT-ATATAATAATA
71965343 TGAAACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATATATAATAATA
Found at i:71965394 original size:63 final size:63
Alignment explanation
Indices: 71965317--71965450 Score: 161
Period size: 60 Copynumber: 2.2 Consensus size: 63
71965307 ATAAATATAT
* * *
71965317 AATAATAAATAAA-TAATATAATAAT-ATGAAACAT-AA-CTCAAATTAATTAAATTAATAG-AA
1 AATAATAAA-AAACAAATATAAAAATAATGAAA-ATAAAGCTCAAATTAATTAAATTAACAGTAA
* *
71965377 AATAATAAAAAACAAATATAAAAATAATGAGAATAAAGCTCAAATTAATTAATTTAACAGTAA
1 AATAATAAAAAACAAATATAAAAATAATGAAAATAAAGCTCAAATTAATTAAATTAACAGTAA
*
71965440 AATAACAAAAA
1 AATAATAAAAA
71965451 TAAAAAAGGG
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 3 0.05
60 21 0.33
61 7 0.11
62 20 0.32
63 12 0.19
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.26
Consensus pattern (63 bp):
AATAATAAAAAACAAATATAAAAATAATGAAAATAAAGCTCAAATTAATTAAATTAACAGTAA
Found at i:71965788 original size:18 final size:18
Alignment explanation
Indices: 71965765--71965836 Score: 83
Period size: 18 Copynumber: 3.9 Consensus size: 18
71965755 TAACAAGTAG
71965765 GGTGATGGAGGTAGTGGC
1 GGTGATGGAGGTAGTGGC
71965783 GGTGATGGAGGTAGTGGAC
1 GGTGATGGAGGTAGTGG-C
* * * *
71965802 GGT-TTAGTAGGTTGTGGG
1 GGTGAT-GGAGGTAGTGGC
71965820 GGTGATGGAGGTAGTGG
1 GGTGATGGAGGTAGTGG
71965837 ATGGTTTAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
18 30 0.68
19 14 0.32
ACGTcount: A:0.17, C:0.03, G:0.54, T:0.26
Consensus pattern (18 bp):
GGTGATGGAGGTAGTGGC
Found at i:71965833 original size:37 final size:37
Alignment explanation
Indices: 71965773--71965849 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
71965763 AGGGTGATGG
71965773 AGGTAGTGGCGGTGATGGAGGTAGTGGACGGTTTAGT
1 AGGTAGTGGCGGTGATGGAGGTAGTGGACGGTTTAGT
* * *
71965810 AGGTTGTGGGGGTGATGGAGGTAGTGGATGGTTTAGT
1 AGGTAGTGGCGGTGATGGAGGTAGTGGACGGTTTAGT
71965847 AGG
1 AGG
71965850 GTGATGGAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.18, C:0.03, G:0.51, T:0.29
Consensus pattern (37 bp):
AGGTAGTGGCGGTGATGGAGGTAGTGGACGGTTTAGT
Found at i:71965872 original size:29 final size:29
Alignment explanation
Indices: 71965819--71965881 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
71965809 TAGGTTGTGG
*
71965819 GGGTGATGGAGGTAGTGGATGGTTTAGTA
1 GGGTGATGGAGGTAGTGGATAGTTTAGTA
* *
71965848 GGGTGATGGAGTTAGTGG-TCAGTTTAGTG
1 GGGTGATGGAGGTAGTGGAT-AGTTTAGTA
71965877 GGGTG
1 GGGTG
71965882 TTTAATTTGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 1 0.03
29 29 0.97
ACGTcount: A:0.17, C:0.02, G:0.49, T:0.32
Consensus pattern (29 bp):
GGGTGATGGAGGTAGTGGATAGTTTAGTA
Found at i:71969314 original size:47 final size:47
Alignment explanation
Indices: 71969262--71969620 Score: 522
Period size: 47 Copynumber: 7.6 Consensus size: 47
71969252 GATAATTGTG
* *
71969262 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
71969309 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCAATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
71969358 ATGTGAAAGGGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
71969405 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
71969454 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
71969501 ATGTGAAAGTGTCTATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * *
71969548 ATGTGAAAGTGTATATATGTGA-CAGGGCTGAGTGGCCAATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGA
*
71969595 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
71969621 TCCCGAAGGG
Statistics
Matches: 282, Mismatches: 24, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
46 5 0.02
47 185 0.66
48 2 0.01
49 90 0.32
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:71969364 original size:96 final size:96
Alignment explanation
Indices: 71969262--71969620 Score: 539
Period size: 96 Copynumber: 3.8 Consensus size: 96
71969252 GATAATTGTG
* * *
71969262 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
* *
71969327 ATGTGATAAGGCCTAATAGCCAATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
71969358 ATGTGAAAGGGTATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
71969423 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
71969454 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTG--TCTAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
*
71969517 ATGTGATGAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
71969548 ATGTGAAAGTGTATATATGTGA-CAGGGCTGAGTGGCCAATGTGATGGATGTGAAAGTGTATA-A
1 ATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCAATGTGATGAATGTGAAAGTGTATATA
71969611 -ATGTGATAAG
65 TATGTGATAAG
71969621 TCCCGAAGGG
Statistics
Matches: 241, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
93 5 0.02
94 90 0.37
95 1 0.00
96 145 0.60
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:71974133 original size:9 final size:9
Alignment explanation
Indices: 71974119--71974420 Score: 374
Period size: 9 Copynumber: 34.7 Consensus size: 9
71974109 TAACTCTAAT
71974119 TAAGTTATG
1 TAAGTTATG
71974128 TAAGTTATG
1 TAAGTTATG
* * *
71974137 ATATGATATA
1 -TAAGTTATG
*
71974147 T-ATTTATG
1 TAAGTTATG
71974155 T-A-TTATG
1 TAAGTTATG
71974162 TAAGTTATG
1 TAAGTTATG
*
71974171 TAAATTATG
1 TAAGTTATG
*
71974180 TAAGTTCTG
1 TAAGTTATG
71974189 TAAGTTATG
1 TAAGTTATG
*
71974198 TGAGTTATG
1 TAAGTTATG
71974207 TAAGTTATG
1 TAAGTTATG
*
71974216 TAA---ATA
1 TAAGTTATG
71974222 TAAGTTATG
1 TAAGTTATG
71974231 TAAGTTATG
1 TAAGTTATG
*
71974240 TGAGTTATG
1 TAAGTTATG
71974249 TAAGTTATG
1 TAAGTTATG
71974258 TAAGTTATG
1 TAAGTTATG
*
71974267 TAAGTTATA
1 TAAGTTATG
71974276 TAAGTTATG
1 TAAGTTATG
71974285 TAAGTTATG
1 TAAGTTATG
*
71974294 TGAGTTATG
1 TAAGTTATG
71974303 T-A---A-G
1 TAAGTTATG
71974307 TAAGTTATG
1 TAAGTTATG
*
71974316 TGAGTTATG
1 TAAGTTATG
71974325 TAAGTTATG
1 TAAGTTATG
*
71974334 TAAGTTATA
1 TAAGTTATG
71974343 TAAGTTATG
1 TAAGTTATG
71974352 TAAGTTATG
1 TAAGTTATG
*
71974361 TGAGTTATG
1 TAAGTTATG
*
71974370 TGAGTTATG
1 TAAGTTATG
71974379 TAAGTTATG
1 TAAGTTATG
71974388 TAAGTTATG
1 TAAGTTATG
*
71974397 TAAGTTATA
1 TAAGTTATG
71974406 TAAGTTATG
1 TAAGTTATG
71974415 TAAGTT
1 TAAGTT
71974421 CAAGTATATA
Statistics
Matches: 254, Mismatches: 28, Indels: 22
0.84 0.09 0.07
Matches are distributed among these distances:
4 2 0.01
5 2 0.01
6 5 0.02
7 6 0.02
8 8 0.03
9 225 0.89
10 6 0.02
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:71974312 original size:22 final size:22
Alignment explanation
Indices: 71974284--71974329 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
71974274 TATAAGTTAT
71974284 GTAAGTTATGTGAGTTATGTAA
1 GTAAGTTATGTGAGTTATGTAA
71974306 GTAAGTTATGTGAGTTATGTAA
1 GTAAGTTATGTGAGTTATGTAA
71974328 GT
1 GT
71974330 TATGTAAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.41
Consensus pattern (22 bp):
GTAAGTTATGTGAGTTATGTAA
Found at i:71974736 original size:29 final size:29
Alignment explanation
Indices: 71974694--71974750 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
71974684 CACATGGAAA
* *
71974694 AAAATTTATTTTAATTAAATAATATTTAT
1 AAAAGTTATATTAATTAAATAATATTTAT
*
71974723 AAAAGTTATATTAATTTAATAATATTTA
1 AAAAGTTATATTAATTAAATAATATTTA
71974751 AATAAATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (29 bp):
AAAAGTTATATTAATTAAATAATATTTAT
Found at i:71974797 original size:19 final size:19
Alignment explanation
Indices: 71974755--71974879 Score: 112
Period size: 19 Copynumber: 6.3 Consensus size: 19
71974745 TATTTAAATA
71974755 AATTAATCCAAATTATATTATT
1 AATTAATCCAAA-T-TA-TATT
71974777 AATTAATCCAAATTATATT
1 AATTAATCCAAATTATATT
* *
71974796 AATTAAAT--AATATTTACATA
1 AATT-AATCCAA-A-TTATATT
71974816 AATTAATCCAAATTATATT
1 AATTAATCCAAATTATATT
* * *
71974835 AATTAAAT-AATAATTAAATA
1 AATT-AATCCA-AATTATATT
71974855 AATTAATCCAAATTATATT
1 AATTAATCCAAATTATATT
71974874 AATTAA
1 AATTAA
71974880 AATAAGATTG
Statistics
Matches: 85, Mismatches: 10, Indels: 19
0.75 0.09 0.17
Matches are distributed among these distances:
18 2 0.02
19 38 0.45
20 30 0.35
21 3 0.04
22 12 0.14
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTAATCCAAATTATATT
Found at i:71974798 original size:61 final size:62
Alignment explanation
Indices: 71974728--71974845 Score: 202
Period size: 61 Copynumber: 1.9 Consensus size: 62
71974718 TTTATAAAAG
* *
71974728 TTATATTAATTTAATAATATTTAAATAAATTAATCCAAATTATATT-ATTAATTAATCCAAA
1 TTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTAATTAAATAATCCAAA
*
71974789 TTATATTAATTAAATAATATTTACATAAATTAATCCAAATTATATTAATTAAATAAT
1 TTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTAATTAAATAAT
71974846 AATTAAATAA
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
61 44 0.83
62 9 0.17
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (62 bp):
TTATATTAATTAAATAATATTTAAATAAATTAATCCAAATTATATTAATTAAATAATCCAAA
Found at i:71974821 original size:20 final size:19
Alignment explanation
Indices: 71974796--71974860 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 19
71974786 AAATTATATT
*
71974796 AATTAAATAATATTTACATA
1 AATTAAATAATA-TTAAATA
* *
71974816 AATT-AATCCAA-ATTATATT
1 AATTAAAT--AATATTAAATA
71974835 AATTAAATAATAATTAAATA
1 AATTAAATAAT-ATTAAATA
71974855 AATTAA
1 AATTAA
71974861 TCCAAATTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
18 2 0.06
19 12 0.33
20 20 0.56
21 2 0.06
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTAAATAATATTAAATA
Found at i:71974824 original size:39 final size:39
Alignment explanation
Indices: 71974777--71974880 Score: 190
Period size: 39 Copynumber: 2.7 Consensus size: 39
71974767 TTATATTATT
* *
71974777 AATTAATCCAAATTATATTAATTAAATAATATTTACATA
1 AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
71974816 AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
1 AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
71974855 AATTAATCCAAATTATATTAATTAAA
1 AATTAATCCAAATTATATTAATTAAA
71974881 ATAAGATTGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (39 bp):
AATTAATCCAAATTATATTAATTAAATAATAATTAAATA
Found at i:71974882 original size:15 final size:14
Alignment explanation
Indices: 71974699--71974880 Score: 76
Period size: 15 Copynumber: 13.0 Consensus size: 14
71974689 GGAAAAAAAT
*
71974699 TTATTTTAATTAAA
1 TTATATTAATTAAA
* * *
71974713 TAATATTTATAAAA
1 TTATATTAATTAAA
*
71974727 GTTATATTAATTTAA
1 -TTATATTAATTAAA
* *
71974742 TAATATTTAAATAAA
1 TTATA-TTAATTAAA
* *
71974757 TTA-ATCCAAATTATA
1 TTATAT--TAATTAAA
*
71974772 TTATTAATTAATCCAAA
1 TTA-T-ATTAAT-TAAA
71974789 TTATATTAATTAAA
1 TTATATTAATTAAA
* *
71974803 -TA-A-TATTTACA
1 TTATATTAATTAAA
* *
71974814 -TAAATTAATCCAAA
1 TTATATTAAT-TAAA
71974828 TTATATTAATTAAA
1 TTATATTAATTAAA
71974842 -TA-A-TAATTAAA
1 TTATATTAATTAAA
* *
71974853 -TAAATTAATCCAAA
1 TTATATTAAT-TAAA
71974867 TTATATTAATTAAA
1 TTATATTAATTAAA
71974881 ATAAGATTGA
Statistics
Matches: 123, Mismatches: 29, Indels: 32
0.67 0.16 0.17
Matches are distributed among these distances:
11 18 0.15
12 4 0.03
13 12 0.10
14 29 0.24
15 49 0.40
16 4 0.03
17 5 0.04
18 2 0.02
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (14 bp):
TTATATTAATTAAA
Found at i:71975139 original size:24 final size:24
Alignment explanation
Indices: 71975095--71975141 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
71975085 TTAACTTAAA
*
71975095 TGATAAAACGGACGATAATATTTG
1 TGATAAAACGGACGAGAATATTTG
* *
71975119 TGATAAAATGGACGAGCATATTT
1 TGATAAAACGGACGAGAATATTT
71975142 CAATAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (24 bp):
TGATAAAACGGACGAGAATATTTG
Found at i:71978243 original size:188 final size:187
Alignment explanation
Indices: 71977968--71978335 Score: 433
Period size: 188 Copynumber: 2.0 Consensus size: 187
71977958 AAAGGCTACA
* * * * **
71977968 AACGACGCAGTTTTTGCAATCTTTTAATAGATTTTTGTGGCGTTTCTAGCGAAAACGCTTGTATT
1 AACGACGCAGTTTTTACAATCTATTAATAGATGTTTGTGGCGTTTCTAGCGAAAACGCTAGTAAA
* * * * *
71978033 TCACATATTTTGTGGTGTTTATAAAAGCGCCACTAATAAAAGGCTAT-AAAACGATGA-CGTTTT
66 TCACACATTTTGCGGCGTTTATAAAAGCGCCACTAATAAAAGG-GATGAAAACGA-CACCGTTTT
** *
71978096 GA-AATCTCTT-TAGATGTTTTGTGGTGTTTTTCTAAGAAGTGCCACTAATAACTTGGTACT
129 -ACAATCTCTTATAGATGTTTTGTGACGTTTTT-T-AGAAGCGCCACTAATAACTTGGTACT
* *
71978156 AACGACGCCG-TTTTACAATCTATTAATAGATGTTTGTGGCGTTTTCTAGTGAAAACG-TCAGTA
1 AACGACGCAGTTTTTACAATCTATTAATAGATGTTTGTGGCG-TTTCTAGCGAAAACGCT-AGTA
* * * *
71978219 AATCACACCTTTTGCGGCGTTTATAGAAGCGCCACTAATAAGAGGGATGTAAACGACACCGTTTT
64 AATCACACATTTTGCGGCGTTTATAAAAGCGCCACTAATAAAAGGGATGAAAACGACACCGTTTT
*
71978284 ACATTCTCTTAATAGATGTTTTGTGACGTTTTTTAGAAGCGCCACTAATAAC
129 ACAATCTCTT-ATAGATGTTTTGTGACGTTTTTTAGAAGCGCCACTAATAAC
71978336 ATAGCTTCAA
Statistics
Matches: 152, Mismatches: 21, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
187 33 0.22
188 99 0.65
189 1 0.01
190 19 0.12
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (187 bp):
AACGACGCAGTTTTTACAATCTATTAATAGATGTTTGTGGCGTTTCTAGCGAAAACGCTAGTAAA
TCACACATTTTGCGGCGTTTATAAAAGCGCCACTAATAAAAGGGATGAAAACGACACCGTTTTAC
AATCTCTTATAGATGTTTTGTGACGTTTTTTAGAAGCGCCACTAATAACTTGGTACT
Found at i:71978443 original size:3 final size:3
Alignment explanation
Indices: 71978437--71978468 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
71978427 TTTTTCTCTT
71978437 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
71978469 TACTATTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:71978838 original size:21 final size:21
Alignment explanation
Indices: 71978813--71978866 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
71978803 TTACTAAGGT
*
71978813 TTTATGGTTTTGGATTTAGGG
1 TTTATGGTTTTAGATTTAGGG
*
71978834 TTTATGGTTTAAGATTTAGGG
1 TTTATGGTTTTAGATTTAGGG
*
71978855 TTTATAGTTTTA
1 TTTATGGTTTTA
71978867 AGTTTTATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (21 bp):
TTTATGGTTTTAGATTTAGGG
Found at i:71979020 original size:21 final size:21
Alignment explanation
Indices: 71978959--71979020 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 21
71978949 ACTGTCTATA
* *
71978959 GTTTAGGGTTTTATGGTTTAGG
1 GTTTAAGG-TTTATAGTTTAGG
* * *
71978981 ATTCAATGTTTAATA-TTTAGG
1 GTTTAAGGTTT-ATAGTTTAGG
71979002 GTTTAAGGTTTATAGTTTA
1 GTTTAAGGTTTATAGTTTA
71979021 TGATTTACGA
Statistics
Matches: 30, Mismatches: 8, Indels: 5
0.70 0.19 0.12
Matches are distributed among these distances:
20 3 0.10
21 21 0.70
22 6 0.20
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.50
Consensus pattern (21 bp):
GTTTAAGGTTTATAGTTTAGG
Found at i:71979891 original size:153 final size:153
Alignment explanation
Indices: 71979667--71979965 Score: 406
Period size: 153 Copynumber: 2.0 Consensus size: 153
71979657 CGTTTTCTGA
*
71979667 GGAAGCGCCGCTAATGCCACTAAAGCTCAAAATAAACGACGTCGTTCTGTTTAATCTTTTAGCGG
1 GGAAGCGCCGCTAATGCCACTAAAGCTCAAAATAAACGACGTCGTTCTCTTTAATCTTTTAGCGG
** * ** *
71979732 TGTTTTTAAAAAAACGCCGCTATAGATCGACCTATAGCGG-TGCTTTTTTAAAAATGCCGCTAAT
66 CATTTTTAAAAAAACGCCGCTATAGATCAACCTATAGCGGCT-CTTCCTTAAAAACGCCGCTAAT
*
71979796 G-TTGGATCTATTGCGGCGTTTTTCG
130 GCTT-GATCT-TAGCGGCGTTTTTCG
* * *
71979821 GGAAGCGCCTCTAATGCCACTAAAGCTCAGAA-AAACGATGTCGTTCTCTTTAATCTTTTAGCGG
1 GGAAGCGCCGCTAATGCCACTAAAGCTCAAAATAAACGACGTCGTTCTCTTTAATCTTTTAGCGG
* * * * *
71979885 CATTTTTGAAAAAGCGCCGCTATAGGTCAATCTTTAGCGGCTCTTCCTTAAAAACGCCGCTAATG
66 CATTTTTAAAAAAACGCCGCTATAGATCAACCTATAGCGGCTCTTCCTTAAAAACGCCGCTAATG
71979950 CTTGATCTTAGCGGCG
131 CTTGATCTTAGCGGCG
71979966 CTTTCATAAA
Statistics
Matches: 127, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
152 7 0.06
153 87 0.69
154 33 0.26
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (153 bp):
GGAAGCGCCGCTAATGCCACTAAAGCTCAAAATAAACGACGTCGTTCTCTTTAATCTTTTAGCGG
CATTTTTAAAAAAACGCCGCTATAGATCAACCTATAGCGGCTCTTCCTTAAAAACGCCGCTAATG
CTTGATCTTAGCGGCGTTTTTCG
Found at i:71979996 original size:39 final size:39
Alignment explanation
Indices: 71979918--71979996 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
71979908 AGGTCAATCT
* * * * *
71979918 TTAGCGGCTCTTCCTTAAAAACGCCGCTAATGCTTGATC
1 TTAGCGGCGCTTCCATAAAAACGCCGCCAATACTCGATC
* *
71979957 TTAGCGGCGCTTTCATAAAAATGCCGCCAATACTCGATC
1 TTAGCGGCGCTTCCATAAAAACGCCGCCAATACTCGATC
71979996 T
1 T
71979997 ATTCGATTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (39 bp):
TTAGCGGCGCTTCCATAAAAACGCCGCCAATACTCGATC
Found at i:71980361 original size:26 final size:26
Alignment explanation
Indices: 71980332--71980388 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
71980322 ACTGTTTTAT
* *
71980332 ATTTTTTATATATTATGTATTTTAAA
1 ATTTTTTACATATTATGTAGTTTAAA
*
71980358 ATTTTTTACATATTATTTAGTTTAAA
1 ATTTTTTACATATTATGTAGTTTAAA
*
71980384 CTTTT
1 ATTTT
71980389 ATACGTCATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.61
Consensus pattern (26 bp):
ATTTTTTACATATTATGTAGTTTAAA
Found at i:71980460 original size:27 final size:26
Alignment explanation
Indices: 71980393--71980471 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
71980383 ACTTTTATAC
*
71980393 GTCATTTTAAATTGTTTTATAAATTA
1 GTCATTTTAAATTGTTTTATATATTA
*
71980419 GTCATTTTAGATTGTTTTATATATTA
1 GTCATTTTAAATTGTTTTATATATTA
* * *
71980445 TTTTATTTTAAATTGTTTTGTATATTA
1 -GTCATTTTAAATTGTTTTATATATTA
71980472 AATTTTTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 24 0.52
27 22 0.48
ACGTcount: A:0.29, C:0.03, G:0.09, T:0.59
Consensus pattern (26 bp):
GTCATTTTAAATTGTTTTATATATTA
Found at i:71980480 original size:27 final size:26
Alignment explanation
Indices: 71980397--71980483 Score: 93
Period size: 27 Copynumber: 3.3 Consensus size: 26
71980387 TTATACGTCA
* * **
71980397 TTTTAAATTGTTTTATAAATTAGTCA
1 TTTTAAATTGTTTTATATATTAATTT
* *
71980423 TTTTAGATTGTTTTATATATTATTTT
1 TTTTAAATTGTTTTATATATTAATTT
*
71980449 ATTTTAAATTGTTTTGTATATTAAATTT
1 -TTTTAAATTGTTTTATATATT-AATTT
71980477 TTTTAAA
1 TTTTAAA
71980484 GTTATTATTT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 21 0.41
27 26 0.51
28 4 0.08
ACGTcount: A:0.31, C:0.01, G:0.07, T:0.61
Consensus pattern (26 bp):
TTTTAAATTGTTTTATATATTAATTT
Found at i:71990305 original size:92 final size:94
Alignment explanation
Indices: 71990112--71990337 Score: 241
Period size: 92 Copynumber: 2.4 Consensus size: 94
71990102 GTAAGGTGCT
* *
71990112 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCCGTGCCGATGCCATGTCCCAG
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCACATATCCGGGCCGATGCCATGTCCCAG
*
71990177 ACATGGTCTTACACTGACACATCTCGTAGCC
64 ACATGGTCTTACACTGACACATATCGTAGCC
* * *
71990208 AATGCATGTCCCAGACATGTCTTACACTGGCT-T-ACATCT-CGAGGCCGATG-CATGTCCCAGA
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCACATATCCG-GGCCGATGCCATGTCCCAGA
* * *
71990269 TAT-GTCTTACACTAGCTCACATAAT-GTGGCC
65 CATGGTCTTACACT-G-ACACAT-ATCGTAGCC
* *
71990300 GATGCATGTCCCAGACATGTCCTT-CATTAGCTCACACA
1 GATGCATGTCCCAGACATGT-CTTACACTAGCTCTCACA
71990338 AATGGCCCTA
Statistics
Matches: 110, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
90 10 0.09
91 16 0.15
92 46 0.42
93 5 0.05
94 16 0.15
95 14 0.13
96 3 0.03
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (94 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCACATATCCGGGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTGACACATATCGTAGCC
Found at i:71990331 original size:46 final size:46
Alignment explanation
Indices: 71990112--71990335 Score: 217
Period size: 46 Copynumber: 4.8 Consensus size: 46
71990102 GTAAGGTGCT
* *
71990112 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGCATATCCG-TGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAG--CTCACATAT-CGAGGCC
* *
71990162 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACATATCG-AGGCC
* * * *
71990208 AATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCGAGGCC
* *
71990254 GATGCATGTCCCAGATATGTCTTACACTAGCTCACATAAT-GTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCACAT-ATCGAGGCC
*
71990300 GATGCATGTCCCAGACATGTCCTT-CATTAGCTCACA
1 GATGCATGTCCCAGACATGT-CTTACACTAGCTCACA
71990336 CAAATGGCCC
Statistics
Matches: 153, Mismatches: 14, Indels: 18
0.83 0.08 0.10
Matches are distributed among these distances:
44 10 0.07
45 18 0.12
46 90 0.59
47 4 0.03
49 1 0.01
50 30 0.20
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCGAGGCC
Found at i:72010823 original size:44 final size:48
Alignment explanation
Indices: 72010716--72010830 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 48
72010706 GTCAATGTCG
* * * *
72010716 TGTCCTAGATAGGTCTTACACTGACTTTCATATATCGAGGCTGATGCCA
1 TGTCCTAGATAGGTCTTACACTGAC-TACACATATCGAAGCTGACGCCA
* **
72010765 TGTCCCAGGCAGGTCTTACACTGAC-ACACA-A-C-AAGCTGACGCCA
1 TGTCCTAGATAGGTCTTACACTGACTACACATATCGAAGCTGACGCCA
72010809 TGTCCTAGATAGGTCTTACACT
1 TGTCCTAGATAGGTCTTACACT
72010831 AGCTTGTATA
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
44 29 0.52
45 1 0.02
46 1 0.02
47 3 0.05
49 22 0.39
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (48 bp):
TGTCCTAGATAGGTCTTACACTGACTACACATATCGAAGCTGACGCCA
Found at i:72010873 original size:48 final size:46
Alignment explanation
Indices: 72010807--72010974 Score: 139
Period size: 46 Copynumber: 3.6 Consensus size: 46
72010797 AAGCTGACGC
* * *
72010807 CATGTCCTAGATAGGTCTTACACTAGCTTGTAT-ATCTCGAA-ACCTATG
1 CATGTCCTAGACATGTCTTACACTAGC---TATCATCTC-AATACCGATG
* *
72010855 CATGTCCTAGACATGTCTTACACTAGCTATCGTCTCAATGCCGATG
1 CATGTCCTAGACATGTCTTACACTAGCTATCATCTCAATACCGATG
* * * **
72010901 CATGTCCCAGACATGTCTTACACTAGC-AT--TCATGATGTGGTCGATG
1 CATGTCCTAGACATGTCTTACACTAGCTATCATC-TCA-AT-ACCGATG
*
72010947 CATGTCCTAGACATGTCTTACACGAGCT
1 CATGTCCTAGACATGTCTTACACTAGCT
72010975 CACATATCAC
Statistics
Matches: 103, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
43 2 0.02
44 2 0.02
45 8 0.08
46 66 0.64
48 25 0.24
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (46 bp):
CATGTCCTAGACATGTCTTACACTAGCTATCATCTCAATACCGATG
Found at i:72010913 original size:46 final size:47
Alignment explanation
Indices: 72010852--72010974 Score: 155
Period size: 46 Copynumber: 2.7 Consensus size: 47
72010842 CTCGAAACCT
72010852 ATGCATGTCCTAGACATGTCTTACACTAGCTATCGTC-TCA-AT-GCCG
1 ATGCATGTCCTAGACATGTCTTACACTAGCTAT--TCATCATATGGCCG
* * * *
72010898 ATGCATGTCCCAGACATGTCTTACACTAGC-ATTCATGATGTGGTCG
1 ATGCATGTCCTAGACATGTCTTACACTAGCTATTCATCATATGGCCG
*
72010944 ATGCATGTCCTAGACATGTCTTACACGAGCT
1 ATGCATGTCCTAGACATGTCTTACACTAGCT
72010975 CACATATCAC
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
43 2 0.03
44 2 0.03
45 3 0.04
46 60 0.90
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (47 bp):
ATGCATGTCCTAGACATGTCTTACACTAGCTATTCATCATATGGCCG
Found at i:72018073 original size:48 final size:49
Alignment explanation
Indices: 72018021--72018149 Score: 181
Period size: 49 Copynumber: 2.7 Consensus size: 49
72018011 GCACATTAAA
* * *
72018021 GTCGATGCCGTGTCCCAGATAGGTCTTACACTGG-TTTCATATATCGAG-
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCG-GT
*
72018069 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGGT
* *
72018118 GTTGATGCCACGTCCCAGACAGGTCTTACACT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACT
72018150 TACACACAAC
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
48 33 0.45
49 40 0.55
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.29
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATATATCGGT
Found at i:72021289 original size:44 final size:42
Alignment explanation
Indices: 72021233--72021334 Score: 116
Period size: 44 Copynumber: 2.4 Consensus size: 42
72021223 GTCCGATATG
* * * *
72021233 TGATTTCGTGTAAGACAACGTTTAGGACATTGGCGTCG-ATT
1 TGATTTCATGTAAGACAACGTCTAGGACATCGGCATCGTATT
* *
72021274 TGAGATTTACATGTAAGACAATGTCTGGGACATCGGCATCGTATT
1 T--GATTT-CATGTAAGACAACGTCTAGGACATCGGCATCGTATT
72021319 TGATTTCATGTAAGAC
1 TGATTTCATGTAAGAC
72021335 CCTGTTTGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
41 1 0.02
42 10 0.20
43 10 0.20
44 26 0.51
45 4 0.08
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (42 bp):
TGATTTCATGTAAGACAACGTCTAGGACATCGGCATCGTATT
Found at i:72021345 original size:42 final size:40
Alignment explanation
Indices: 72021233--72021355 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 40
72021223 GTCCGATATG
* * *
72021233 TGATTTCGTGTAAGACAAC-GTTTAGGACATTGGCGTCGATT
1 TGATTTCATGTAAGAC-ACTGTTTGGGACA-TGGCATCGATT
* *
72021274 TGAGATTTACATGTAAGACAATGTCTGGGACATCGGCATCGTATT
1 T--GATTT-CATGTAAGACACTGTTTGGGACAT-GGCATCG-ATT
*
72021319 TGATTTCATGTAAGACCCTGTTTGGGACAGTGGCATC
1 TGATTTCATGTAAGACACTGTTTGGGACA-TGGCATC
72021356 AAAATTTTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
41 1 0.01
42 26 0.39
43 13 0.19
44 23 0.34
45 4 0.06
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (40 bp):
TGATTTCATGTAAGACACTGTTTGGGACATGGCATCGATT
Found at i:72022358 original size:158 final size:158
Alignment explanation
Indices: 72022182--72022489 Score: 553
Period size: 158 Copynumber: 1.9 Consensus size: 158
72022172 GATTTTTATA
* *
72022182 TGGGAATGAATGATGATATCATGGGTCAATTTGTGCATGATTTAGTATGTTTTTGGCTGCCTTTG
1 TGGGAATGAATGATGATATCATGGGTCAATTTGTACATGATTTAGTATGATTTTGGCTGCCTTTG
*
72022247 AATCATGAAATGTGCTTTGTTTCATGCTTGTAGGGATTGTCCAAAATGGGTGGCAATTTGGCTTT
66 AATCATGAAATGTGCTTTGTTTCATGCTTGTAGGGATGGTCCAAAATGGGTGGCAATTTGGCTTT
*
72022312 GTAAATAGCCTATTTTTGTCTACATGGG
131 GCAAATAGCCTATTTTTGTCTACATGGG
72022340 TGGGAATGAATGATGATATCATGGGTCAATTTGTACATGATTTAGTATGATTTTGGCTGCCTTTG
1 TGGGAATGAATGATGATATCATGGGTCAATTTGTACATGATTTAGTATGATTTTGGCTGCCTTTG
**
72022405 GGTCATGAAATGTGCTTTGTTTCATGCTTGTAGGGATGGTCCAAAATGGGTGGCAATTTGGCTTT
66 AATCATGAAATGTGCTTTGTTTCATGCTTGTAGGGATGGTCCAAAATGGGTGGCAATTTGGCTTT
*
72022470 GCAAGTAGCCTATTTTTGTC
131 GCAAATAGCCTATTTTTGTC
72022490 CACACGAGCA
Statistics
Matches: 143, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
158 143 1.00
ACGTcount: A:0.22, C:0.12, G:0.27, T:0.39
Consensus pattern (158 bp):
TGGGAATGAATGATGATATCATGGGTCAATTTGTACATGATTTAGTATGATTTTGGCTGCCTTTG
AATCATGAAATGTGCTTTGTTTCATGCTTGTAGGGATGGTCCAAAATGGGTGGCAATTTGGCTTT
GCAAATAGCCTATTTTTGTCTACATGGG
Found at i:72033762 original size:18 final size:19
Alignment explanation
Indices: 72033728--72033764 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
72033718 AATGCAAATT
72033728 ATATATGATGTAAATGAAA
1 ATATATGATGTAAATGAAA
*
72033747 ATATATG-TGTATATGAAA
1 ATATATGATGTAAATGAAA
72033765 TGTACATTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.35
Consensus pattern (19 bp):
ATATATGATGTAAATGAAA
Found at i:72036232 original size:27 final size:27
Alignment explanation
Indices: 72036192--72036266 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
72036182 GCTCAGTTAT
*
72036192 CAGATATTGTGGCAGAGCCACCAG-AA
1 CAGATATTGTGGCAAAGCCACCAGAAA
*
72036218 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAAAGCCACCAGAAA
*
72036246 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAAAGCCAC
72036267 TTAACAGAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 6 0.14
27 30 0.68
28 8 0.18
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGAAA
Found at i:72036965 original size:27 final size:27
Alignment explanation
Indices: 72036934--72037407 Score: 673
Period size: 27 Copynumber: 17.6 Consensus size: 27
72036924 TACCCAATAA
* * *
72036934 GGTATCTCGATAATTCCACCTTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* *
72036961 GGTATTT-TAGTAATTCTACCCTACAAG
1 GGTATTTCGA-TAATTCTACCCTACAGG
72036988 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
**
72037015 GGTATTTTAATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* * *
72037042 GGTATTTCGGTAATTCCACCATACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
72037069 GGTATTT-TAGTAATTCTACCCTACAGG
1 GGTATTTCGA-TAATTCTACCCTACAGG
* *
72037096 GGTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* *
72037123 GGTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
72037150 GGTATTCCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
72037177 GGTATTCCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
72037204 GGTATTTCGATAATTCTACCCTATAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* * * *
72037231 GGTATTTCGGTAATTTTACCCTATAAG
1 GGTATTTCGATAATTCTACCCTACAGG
72037258 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
72037285 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* *
72037312 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
72037339 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* *
72037366 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
72037393 GGTATTTCGGTAATT
1 GGTATTTCGATAATT
72037408 TTGTAAATCG
Statistics
Matches: 405, Mismatches: 38, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
26 1 0.00
27 403 1.00
28 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTATTTCGATAATTCTACCCTACAGG
Found at i:72037739 original size:27 final size:27
Alignment explanation
Indices: 72037443--72037732 Score: 337
Period size: 27 Copynumber: 10.7 Consensus size: 27
72037433 TTCTGTAAAT
* **
72037443 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *** ***
72037470 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* ** * *
72037497 CGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
72037524 CAATGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
72037551 TAAGGGTATTTTGATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
72037578 CAAGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
72037605 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* **
72037632 CAATGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
72037659 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
72037686 CAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
72037713 CAATGGTATTTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
72037733 GGTAAACTAA
Statistics
Matches: 226, Mismatches: 37, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 226 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:72043887 original size:46 final size:46
Alignment explanation
Indices: 72043837--72044012 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
72043827 TGGTTGAGCA
72043837 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72043883 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
72043928 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72043976 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72044013 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72043993 original size:93 final size:93
Alignment explanation
Indices: 72043834--72044005 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72043824 GGATGGTTGA
* *
72043834 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72043899 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
72043927 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72043992 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
72044006 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72047784 original size:18 final size:18
Alignment explanation
Indices: 72047761--72047799 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
72047751 TCTTTAGCGG
72047761 CGCATTCCCCACAAACGC
1 CGCATTCCCCACAAACGC
72047779 CGCATTCCCCACAAACGC
1 CGCATTCCCCACAAACGC
72047797 CGC
1 CGC
72047800 TAAAGAACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.51, G:0.13, T:0.10
Consensus pattern (18 bp):
CGCATTCCCCACAAACGC
Found at i:72047845 original size:43 final size:42
Alignment explanation
Indices: 72047786--72047946 Score: 198
Period size: 43 Copynumber: 3.8 Consensus size: 42
72047776 CGCCGCATTC
*
72047786 CCCACAAACGCCGCTAAAGAACATGGCCTTTAGCTGCGCTTTT
1 CCCACAAACGCCGCTAAAGAACATGACCTTTAGC-GCGCTTTT
* * *
72047829 CCCACAAACGCCGCTAAAGATCATGGCCTTTAGCGAGGCTTTTT
1 CCCACAAACGCCGCTAAAGAACATGACCTTTAGCG-CGC-TTTT
* * * *
72047873 CCCACTAACGCCGCTATAGAATA-GACTTTTAGCGGCGCTTTT
1 CCCACAAACGCCGCTAAAGAACATGACCTTTAGC-GCGCTTTT
*
72047915 CCCACAAATGCCGCTAAAGAACATGACCTTTA
1 CCCACAAACGCCGCTAAAGAACATGACCTTTA
72047947 AAAAAATATT
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
42 24 0.24
43 52 0.52
44 24 0.24
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (42 bp):
CCCACAAACGCCGCTAAAGAACATGACCTTTAGCGCGCTTTT
Found at i:72047932 original size:86 final size:87
Alignment explanation
Indices: 72047786--72047946 Score: 234
Period size: 86 Copynumber: 1.9 Consensus size: 87
72047776 CGCCGCATTC
* * *
72047786 CCCACAAACGCCGCTAAAGAACATGGCCTTTAGCTGCGCTTTTCCCACAAACGCCGCTAAAGATC
1 CCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAAC
*
72047851 ATGGCCTTTAGCGAGGCTTTTT
66 ATGACCTTTAGCGAGGCTTTTT
* * * * *
72047873 CCCACTAACGCCGCTATAGAATA-GACTTTTAGCGGCGCTTTTCCCACAAATGCCGCTAAAGAAC
1 CCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAAC
72047937 ATGACCTTTA
66 ATGACCTTTA
72047947 AAAAAATATT
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
86 45 0.69
87 20 0.31
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.24
Consensus pattern (87 bp):
CCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGAAC
ATGACCTTTAGCGAGGCTTTTT
Found at i:72048118 original size:35 final size:35
Alignment explanation
Indices: 72048079--72048147 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
72048069 TTTATATTAA
*
72048079 AATTTTAACTTAAAAACTAAATATAA-AAATTAATG
1 AATTTAAACTTAAAAACTAAA-ATAATAAATTAATG
* * *
72048114 AATTTAAATTTAGAATCTAAAATAATAAATTAAT
1 AATTTAAACTTAAAAACTAAAATAATAAATTAAT
72048148 AACACAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 4 0.14
35 25 0.86
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.36
Consensus pattern (35 bp):
AATTTAAACTTAAAAACTAAAATAATAAATTAATG
Found at i:72049077 original size:40 final size:41
Alignment explanation
Indices: 72049019--72049124 Score: 114
Period size: 40 Copynumber: 2.7 Consensus size: 41
72049009 TTAATTTTTT
* *
72049019 GCGGTGGTTTTT-AGAAAGCGCCGCTAATAG-TCGACCTATA
1 GCGGT-GTTTTTCAAAAAGCGCCGCTAATAGCTCAACCTATA
* * *
72049059 GCGGTGTTTTTCAAAAAGCACCGCTAA-CGCTCAATCTATA
1 GCGGTGTTTTTCAAAAAGCGCCGCTAATAGCTCAACCTATA
*
72049099 GC-GCGTTTTTC-AAAAGCGCCGCTAAT
1 GCGGTGTTTTTCAAAAAGCGCCGCTAAT
72049125 GCCACTAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
38 13 0.23
39 15 0.27
40 28 0.50
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (41 bp):
GCGGTGTTTTTCAAAAAGCGCCGCTAATAGCTCAACCTATA
Found at i:72049182 original size:141 final size:142
Alignment explanation
Indices: 72048920--72049304 Score: 485
Period size: 141 Copynumber: 2.7 Consensus size: 142
72048910 TTTTGCAGAA
* * * *
72048920 TTTTTCAAAAAGCGCCGCTAGCGGTCAACCTATAGTGGCGTTTTTCAAAAAGCGCCGCTAATGCC
1 TTTTTCAAAAAGCACCGCTAGCGCTCAATCTATAG-CGCGTTTTTCAAAAAGCGCCGCTAATGCC
* *
72048985 ACT-AACGCTCAACATAAAGTGTGCTTAA-TTTTTTGCGGTGGTTTTTAGAAAGCGCCGCTAATA
65 ACTAAAAGCTCAACAT----TGTGCTTAATTTTTTTGCGGAGGTTTTTAGAAAGCGCCGCTAAT-
**
72049048 G-TCGACCTATAGCGGTG
125 GTTCGACCTATAGCGACG
*
72049065 TTTTTCAAAAAGCACCGCTAACGCTCAATCTATAGCGCGTTTTTC-AAAAGCGCCGCTAATGCCA
1 TTTTTCAAAAAGCACCGCTAGCGCTCAATCTATAGCGCGTTTTTCAAAAAGCGCCGCTAATGCCA
* *
72049129 CTAAAAGCTCAACATTGTGCTTAATTTTTTTGTGGAGGTTTTTAGAAAGCGCCGCTAATGTTCGT
66 CTAAAAGCTCAACATTGTGCTTAATTTTTTTGCGGAGGTTTTTAGAAAGCGCCGCTAATGTTCGA
72049194 CCTATAGCGACG
131 CCTATAGCGACG
* * * ** * * *
72049206 TTTTTCAAGAAGCACTGCTAGTGCTTGATCTATAGCGGTGTTTTTCAAAAAGTGCTGCTAATGCC
1 TTTTTCAAAAAGCACCGCTAGCGCTCAATCTATAGC-GCGTTTTTCAAAAAGCGCCGCTAATGCC
*
72049271 ACTAAAA-CTCAACATTATGCTTAA-TTTTTTGCGG
65 ACTAAAAGCTCAACATTGTGCTTAATTTTTTTGCGG
72049305 CGCTTTCTAA
Statistics
Matches: 213, Mismatches: 22, Indels: 14
0.86 0.09 0.06
Matches are distributed among these distances:
140 10 0.05
141 84 0.39
142 24 0.11
143 44 0.21
144 20 0.09
145 31 0.15
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (142 bp):
TTTTTCAAAAAGCACCGCTAGCGCTCAATCTATAGCGCGTTTTTCAAAAAGCGCCGCTAATGCCA
CTAAAAGCTCAACATTGTGCTTAATTTTTTTGCGGAGGTTTTTAGAAAGCGCCGCTAATGTTCGA
CCTATAGCGACG
Found at i:72049355 original size:40 final size:40
Alignment explanation
Indices: 72049311--72049439 Score: 168
Period size: 40 Copynumber: 3.2 Consensus size: 40
72049301 GCGGCGCTTT
* *
72049311 CTAATGGTCGACCTATAGTGGTGTTTTTCAAGAAGCGCTG
1 CTAATGCTCGACCTATAGTGGTGTTTTTCAAAAAGCGCTG
*
72049351 CTAATGCTCGACCTATAGCGGTGTTTTTCAAAAAGCGCTG
1 CTAATGCTCGACCTATAGTGGTGTTTTTCAAAAAGCGCTG
* * ** * * *
72049391 CTAATGCTCGATCTATAATGGCCTTTTTCAAAATGTGCCG
1 CTAATGCTCGACCTATAGTGGTGTTTTTCAAAAAGCGCTG
72049431 CTAATGCTC
1 CTAATGCTC
72049440 AATTTATAGC
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (40 bp):
CTAATGCTCGACCTATAGTGGTGTTTTTCAAAAAGCGCTG
Found at i:72049458 original size:40 final size:39
Alignment explanation
Indices: 72049311--72049458 Score: 152
Period size: 40 Copynumber: 3.7 Consensus size: 39
72049301 GCGGCGCTTT
* * * *
72049311 CTAATGGTCGACCTATAGTGGTGTTTTTCAAGAAGCGCTG
1 CTAATGCTCGATCTATAGCGGCGTTTTTCAA-AAGCGCTG
* *
72049351 CTAATGCTCGACCTATAGCGGTGTTTTTCAAAAAGCGCTG
1 CTAATGCTCGATCTATAGCGGCGTTTTTC-AAAAGCGCTG
** * * *
72049391 CTAATGCTCGATCTATAATGGCCTTTTTCAAAATGTGCCG
1 CTAATGCTCGATCTATAGCGGCGTTTTTCAAAA-GCGCTG
* *
72049431 CTAATGCTCAATTTATAGCGGCGTTTTT
1 CTAATGCTCGATCTATAGCGGCGTTTTT
72049459 TATCCAAACG
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
39 4 0.04
40 86 0.93
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (39 bp):
CTAATGCTCGATCTATAGCGGCGTTTTTCAAAAGCGCTG
Found at i:72050681 original size:42 final size:43
Alignment explanation
Indices: 72050547--72050712 Score: 235
Period size: 43 Copynumber: 3.9 Consensus size: 43
72050537 TCGGGGATTT
* *
72050547 GCTTTTCCCACAAGCGCCACTAAAGAACATGACCTTTAGCGGC
1 GCTTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGC
* * *
72050590 GCTTTTCCCACAAACGCTGCTAAAGATCATGGCCTTTAGCGGC
1 GCTTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGC
* * *
72050633 GCTTTTCCCACAAACGCCGTTATAGAACA-GACCTTTAGCGAC
1 GCTTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGC
* *
72050675 ACTTTTCCCACAAACGCTGCTAAAGAACATGACCTTTA
1 GCTTTTCCCACAAACGCCGCTAAAGAACATGACCTTTA
72050713 AAAAAATATT
Statistics
Matches: 107, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 36 0.34
43 71 0.66
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (43 bp):
GCTTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGGC
Found at i:72050691 original size:85 final size:86
Alignment explanation
Indices: 72050547--72050712 Score: 253
Period size: 85 Copynumber: 1.9 Consensus size: 86
72050537 TCGGGGATTT
* * *
72050547 GCTTTTCCCACAAGCGCCACTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACAAACGCTGCTA
1 GCTTTTCCCACAAACGCCACTAAAGAACATGACCTTTAGCGACACTTTTCCCACAAACGCTGCTA
* *
72050612 AAGATCATGGCCTTTAGCGGC
66 AAGAACATGACCTTTAGCGGC
** *
72050633 GCTTTTCCCACAAACGCCGTTATAGAACA-GACCTTTAGCGACACTTTTCCCACAAACGCTGCTA
1 GCTTTTCCCACAAACGCCACTAAAGAACATGACCTTTAGCGACACTTTTCCCACAAACGCTGCTA
72050697 AAGAACATGACCTTTA
66 AAGAACATGACCTTTA
72050713 AAAAAATATT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
85 47 0.65
86 25 0.35
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (86 bp):
GCTTTTCCCACAAACGCCACTAAAGAACATGACCTTTAGCGACACTTTTCCCACAAACGCTGCTA
AAGAACATGACCTTTAGCGGC
Found at i:72050884 original size:35 final size:35
Alignment explanation
Indices: 72050845--72050913 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 35
72050835 TTTATATTAA
*
72050845 AATTTTAACTTAAAAACTAAATATAA-AAATTAATG
1 AATTTAAACTTAAAAACTAAA-ATAATAAATTAATG
* * *
72050880 AATTTAAATTTAGAATCTAAAATAATAAATTAAT
1 AATTTAAACTTAAAAACTAAAATAATAAATTAAT
72050914 AACACAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 4 0.14
35 25 0.86
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.36
Consensus pattern (35 bp):
AATTTAAACTTAAAAACTAAAATAATAAATTAATG
Done.