Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 221 of 325
Found at i:72051954 original size:141 final size:142
Alignment explanation
Indices: 72051683--72051987 Score: 384
Period size: 141 Copynumber: 2.1 Consensus size: 142
72051673 CGGCATTATT
* *
72051683 CAAAAAGCGCCGCTAATGCTTGATATATAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCCACTAA
1 CAAAAAGCGCCGCTAATGCTCGATATATAGCGGCGTTTTTGAAAAAGCGCCACTAATGCCACTAA
* *
72051748 AGCTCAACATAAAGTGTGCTTAATTTTTTGCAGCGTTTTTCAAAAAGCGCCGCTAATAGTTGACC
66 AGCTCAACAT--A-TGTGCTTAATTTTTTGCAGCATTTTTCAAAAAGCGCCGCTAATAGTCGACC
*
72051813 TATAGCTACAATTTA
128 TATAGCGACAATTTA
* * * * *
72051828 CAAAAAGCGTCGCTAATGCTCGATCTATAG-TGCGTTTTT-CAAAAGCGTCACTAATGCCACTAA
1 CAAAAAGCGCCGCTAATGCTCGATATATAGCGGCGTTTTTGAAAAAGCGCCACTAATGCCACT-A
* * *
72051891 AAGCTCAACAT-TGTGCTTAATTTTTTTGCGGCATTTTT-AAGAAAGTGCCGCTAATGGTCGACC
65 AAGCTCAACATATGTGCTTAA-TTTTTTGCAGCATTTTTCAA-AAAGCGCCGCTAATAGTCGACC
** *
72051954 TATAGCGACGTTTTT
128 TATAGCGACAATTTA
72051969 CAAAAAGCGCCGCTAATGC
1 CAAAAAGCGCCGCTAATGC
72051988 CACTAAAGCT
Statistics
Matches: 140, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
140 11 0.08
141 63 0.45
143 19 0.14
144 20 0.14
145 27 0.19
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (142 bp):
CAAAAAGCGCCGCTAATGCTCGATATATAGCGGCGTTTTTGAAAAAGCGCCACTAATGCCACTAA
AGCTCAACATATGTGCTTAATTTTTTGCAGCATTTTTCAAAAAGCGCCGCTAATAGTCGACCTAT
AGCGACAATTTA
Found at i:72052013 original size:102 final size:101
Alignment explanation
Indices: 72051831--72052086 Score: 345
Period size: 102 Copynumber: 2.5 Consensus size: 101
72051821 CAATTTACAA
* * * * * *
72051831 AAAGCGTCGCTAATGCTCGATCTATAGTGCGTTTTTCAAAAGCGTCACTAATGCCACTAAAAGCT
1 AAAGCGCCGCTAATGGTCGACCTATAGCGCGTTTTTCAAAAGCGCCGCTAATGCCACTAAAAGCT
* *
72051896 CAACATTGTGCTTAATTTTTTTGCGGCATTTT-TAAG
66 CAACATTATGCTTAATTTTTTTGCAGCATTTTGT-AG
*
72051932 AAAGTGCCGCTAATGGTCGACCTATAGCGACGTTTTTCAAAAAGCGCCGCTAATGCCACT-AAAG
1 AAAGCGCCGCTAATGGTCGACCTATAGCG-CGTTTTTC-AAAAGCGCCGCTAATGCCACTAAAAG
* *
72051996 CTCAGCATTATGCTTAATTTTTTTGCAGCGTTTTGTAG
64 CTCAACATTATGCTTAATTTTTTTGCAGCATTTTGTAG
* *
72052034 AAAGCGCCGCTAATGGTCGACCTATAGCGGCATTTTTCAAAAGCACCGCTAAT
1 AAAGCGCCGCTAATGGTCGACCTATAGC-GCGTTTTTCAAAAGCGCCGCTAAT
72052087 ACTTGATCTA
Statistics
Matches: 137, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
101 38 0.28
102 78 0.57
103 21 0.15
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (101 bp):
AAAGCGCCGCTAATGGTCGACCTATAGCGCGTTTTTCAAAAGCGCCGCTAATGCCACTAAAAGCT
CAACATTATGCTTAATTTTTTTGCAGCATTTTGTAG
Found at i:72052135 original size:40 final size:40
Alignment explanation
Indices: 72052034--72052189 Score: 161
Period size: 40 Copynumber: 3.9 Consensus size: 40
72052024 CGTTTTGTAG
* * *
72052034 AAAGCGCCGCTAATGGTCGACCTATAGCGGCATTTTTC-A
1 AAAGCGCTGCTAATGCTCGATCTATAGCGGCATTTTTCAA
* * * * *
72052073 AAAGCACCGCTAATACTTGATCTATAGCGGCATGTTTCAA
1 AAAGCGCTGCTAATGCTCGATCTATAGCGGCATTTTTCAA
* * * *
72052113 AAAGGGCTACTAATGCTCGATCTATAGCGACTTTTTTCAA
1 AAAGCGCTGCTAATGCTCGATCTATAGCGGCATTTTTCAA
* * * *
72052153 AAAGCGCTGCTAATGCTCAATTTATAGTGGCGTTTTT
1 AAAGCGCTGCTAATGCTCGATCTATAGCGGCATTTTT
72052190 TTATCCAAAA
Statistics
Matches: 94, Mismatches: 22, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
39 32 0.34
40 62 0.66
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (40 bp):
AAAGCGCTGCTAATGCTCGATCTATAGCGGCATTTTTCAA
Found at i:72055663 original size:14 final size:13
Alignment explanation
Indices: 72055653--72055694 Score: 68
Period size: 12 Copynumber: 3.2 Consensus size: 13
72055643 AATATATAAC
72055653 ATATAAAATATAT
1 ATATAAAATATAT
72055666 ATAATAAAATATAT
1 AT-ATAAAATATAT
72055680 A-ATAAAATATAT
1 ATATAAAATATAT
72055692 ATA
1 ATA
72055695 AGAAAGATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 12 0.44
13 3 0.11
14 12 0.44
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATATAAAATATAT
Found at i:72055695 original size:14 final size:14
Alignment explanation
Indices: 72055655--72055695 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
72055645 TATATAACAT
72055655 ATAAAATATATATA
1 ATAAAATATATATA
72055669 AT-AAA-ATATATA
1 ATAAAATATATATA
72055681 ATAAAATATATATA
1 ATAAAATATATATA
72055695 A
1 A
72055696 GAAAGATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 9 0.36
13 6 0.24
14 10 0.40
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAAAATATATATA
Found at i:72057815 original size:175 final size:175
Alignment explanation
Indices: 72057519--72058072 Score: 894
Period size: 175 Copynumber: 3.2 Consensus size: 175
72057509 TAAACACGTG
* * * * *
72057519 AAAGCCAAATCTGCTGTGTCTTTGATTTGCTCCTTGTGAACACAAGGATGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* *
72057584 TCTGCTTCAGTA-AAATCATCTGAAGATTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAG
66 TCTGCTTCAGTATAAA-CATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAG
*
72057648 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCG
130 ATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
* * *
72057694 AAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGTCGAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
72057759 TCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGA
66 TCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGA
* *
72057824 TGCCAGATCTGTTATCTTGAATCTGTTTTGGTGTGAGAACATCCA
131 TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
* * *
72057869 AAAATCAGATCTGCTATGTCTTTGATTTGTTCCTTGTAAACATAAGAATGCCAAATCATCTTGGA
1 AAAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
* * *
72057934 TCTACTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGTGTCTGCTCTCCGTCAAAATGGAGA
66 TCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGA
* *
72057999 TGTCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAAAACATCCA
131 TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
*
72058044 AAAGTCAGATCTGCTATGTCTTTGATTTG
1 AAAGTCAAATCTGCTATGTCTTTGATTTG
72058073 CACCTCGTCG
Statistics
Matches: 351, Mismatches: 27, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
175 348 0.99
176 3 0.01
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.34
Consensus pattern (175 bp):
AAAGTCAAATCTGCTATGTCTTTGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGGA
TCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGA
TGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCA
Found at i:72057968 original size:87 final size:87
Alignment explanation
Indices: 72057478--72057974 Score: 290
Period size: 87 Copynumber: 5.7 Consensus size: 87
72057468 CAAATATAGA
* ** * * *
72057478 AATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACA-CGTGAAAGCCAAATCTGCTGTGTCTTT
1 AATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATC-TGAAAGTCAGATCTGCTATGTCTTT
*
72057542 GATTTGCTCCTTGTGAACACAAG
65 GATTTGCTCCTTGTGAACATAAG
* * * *
72057565 GATGCCAAATCATCTTGGATCTGCTTCAGTA-AAATCATCTG-AAGATTAGATCTGCTATGTATC
1 AATGCCAAATCATCTTGGATCTGCTTCAGTATAAA-CATCTGAAAG-TCAGATCTGCTATGTCTT
* *
72057628 TG--CT-CTCC--GTCGAA-AT-GG
64 TGATTTGCTCCTTGT-GAACATAAG
* ** * * *
72057646 AGATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGTCAAATCTGCTAT
1 A-ATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAGATCTGCTAT
* * * *
72057711 GTCTTCGATTTGTTCCTTGTAAACACAAG
59 GTCTTTGATTTGCTCCTTGTGAACATAAG
* * * * * *
72057740 AATGTCGAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTG
1 AATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAGATCTGCTATGTCTTTG
* *
72057805 --CT-CTCC--GTCGAA-AT-GG
66 ATTTGCTCCTTGT-GAACATAAG
* * * ** * ** *
72057821 AGATGCCAGATCTGTTATCTTGAATCTGTTTTGGTGTGAGAACATCCAAAAATCAGATCTGCTAT
1 A-ATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAGATCTGCTAT
* *
72057886 GTCTTTGATTTGTTCCTTGTAAACATAAG
59 GTCTTTGATTTGCTCCTTGTGAACATAAG
* * * *
72057915 AATGCCAAATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGT
1 AATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAGATCTGCTATGT
72057975 GTCTGCTCTC
Statistics
Matches: 296, Mismatches: 79, Indels: 70
0.67 0.18 0.16
Matches are distributed among these distances:
81 3 0.01
82 22 0.07
83 5 0.02
84 7 0.02
85 2 0.01
86 39 0.13
87 92 0.31
88 49 0.17
89 38 0.13
90 2 0.01
91 6 0.02
92 4 0.01
93 23 0.08
94 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (87 bp):
AATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAGATCTGCTATGTCTTTG
ATTTGCTCCTTGTGAACATAAG
Found at i:72067890 original size:46 final size:46
Alignment explanation
Indices: 72067836--72068011 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 46
72067826 TGTTTGGGCA
*
72067836 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *** * * ** *
72067882 TCCAAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
72067929 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
72067975 CCCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72068012 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 25, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
46 68 0.67
47 34 0.33
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:72067991 original size:93 final size:93
Alignment explanation
Indices: 72067832--72068003 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
72067822 AGGATGTTTG
* *
72067832 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAG
*
72067897 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * *
72067925 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGATCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAG
72067990 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
72068004 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:72072818 original size:5 final size:5
Alignment explanation
Indices: 72072808--72072865 Score: 55
Period size: 5 Copynumber: 11.2 Consensus size: 5
72072798 GTTATGTATA
* * *
72072808 ATAAT ATAAT ATGAAT AAAAT ATAAGG A-AAT ATAAT ATAAA ATAAT AATAAT
1 ATAAT ATAAT AT-AAT ATAAT ATAA-T ATAAT ATAAT ATAAT ATAAT -ATAAT
72072860 ATAAT A
1 ATAAT A
72072866 AGTATTTTGC
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
4 1 0.02
5 32 0.74
6 10 0.23
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (5 bp):
ATAAT
Found at i:72072934 original size:22 final size:23
Alignment explanation
Indices: 72072906--72072956 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
72072896 TTAATATGTA
72072906 ATATATAACATATAA-AAAATAG
1 ATATATAACATATAATAAAATAG
* *
72072928 ATATAT-ATATATAATAAAATAT
1 ATATATAACATATAATAAAATAG
72072950 ATA-ATAA
1 ATATATAA
72072957 TAAAATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 9 0.36
22 16 0.64
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (23 bp):
ATATATAACATATAATAAAATAG
Found at i:72072951 original size:12 final size:13
Alignment explanation
Indices: 72072891--72072970 Score: 55
Period size: 14 Copynumber: 6.4 Consensus size: 13
72072881 AATATGGTAA
*
72072891 AATAATTAATATGT
1 AATAA-TAATATAT
*
72072905 AATATATAACATAT
1 AATA-ATAATATAT
*
72072919 AA-AA-AATAGAT
1 AATAATAATATAT
72072930 -AT-AT-ATATAT
1 AATAATAATATAT
72072940 AATAA-AATATAT
1 AATAATAATATAT
*
72072952 AATAATAAAATAT
1 AATAATAATATAT
72072965 ATATAA
1 A-ATAA
72072971 GAAAGATAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
10 7 0.13
11 7 0.13
12 13 0.25
13 8 0.15
14 16 0.31
15 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (13 bp):
AATAATAATATAT
Found at i:72073998 original size:17 final size:18
Alignment explanation
Indices: 72073976--72074013 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
72073966 ATGTATTTTA
*
72073976 TCCTCT-AAAAAAATCGG
1 TCCTCTCAAAAAAATCCG
72073993 TCCTCTCAAAAAAATCCG
1 TCCTCTCAAAAAAATCCG
72074011 TCC
1 TCC
72074014 CTTTTACAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.37, C:0.32, G:0.08, T:0.24
Consensus pattern (18 bp):
TCCTCTCAAAAAAATCCG
Found at i:72082219 original size:16 final size:16
Alignment explanation
Indices: 72082198--72082233 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
72082188 AATATAAACA
*
72082198 AAATTGAAATAAAATT
1 AAATTGAAATAAAAAT
*
72082214 AAATTGCAATAAAAAT
1 AAATTGAAATAAAAAT
72082230 AAAT
1 AAAT
72082234 GGCTAAAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.03, G:0.06, T:0.28
Consensus pattern (16 bp):
AAATTGAAATAAAAAT
Found at i:72082649 original size:40 final size:40
Alignment explanation
Indices: 72082594--72082674 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
72082584 AGAATACACC
72082594 TAGACTTCACTTGTTATTTGACTCTGAACTAGACGATTTA
1 TAGACTTCACTTGTTATTTGACTCTGAACTAGACGATTTA
72082634 TAGACTTCACTTGTTATTTGACTCTGAACTAGACGATTTA
1 TAGACTTCACTTGTTATTTGACTCTGAACTAGACGATTTA
72082674 T
1 T
72082675 TCACTTGACT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (40 bp):
TAGACTTCACTTGTTATTTGACTCTGAACTAGACGATTTA
Found at i:72085446 original size:47 final size:47
Alignment explanation
Indices: 72085383--72085681 Score: 399
Period size: 47 Copynumber: 6.3 Consensus size: 47
72085373 CCCTTCGGGA
* * *
72085383 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
72085430 CTTATCACATATATACACT-TTCTCATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
72085477 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATT-GGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
72085523 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
72085570 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
72085617 CTTATCACGCATATATATACT-TTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
72085666 CCTATCACATATATAC
1 CTTATCACATATATAC
72085682 TTGTACATCA
Statistics
Matches: 228, Mismatches: 19, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
46 43 0.19
47 145 0.64
49 39 0.17
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:72085560 original size:93 final size:93
Alignment explanation
Indices: 72085383--72085681 Score: 395
Period size: 93 Copynumber: 3.2 Consensus size: 93
72085373 CCCTTCGGGA
* * * *
72085383 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACA
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACA
*
72085447 CTTTCTCATTCATCACATTGGCCATTCGGC
65 -TTTCACATTCATCACATTGGCCATTCGGC
* * *
72085477 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATT-GGCCTTATCACACATACACAT
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACAT
72085541 GTTCACATTCATCACATTGGCCATTCGGC
66 -TTCACATTCATCACATTGGCCATTCGGC
* * * * *
72085570 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGACCTTATCACGCATATATAT
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA--CACATATAC
*
72085635 ACTTTCACATTCATCACATTGGCCACTCGGC
64 A-TTTCACATTCATCACATTGGCCATTCGGC
*
72085666 CCTATCACATATATAC
1 CTTATCACATATATAC
72085682 TTGTACATCA
Statistics
Matches: 179, Mismatches: 20, Indels: 10
0.86 0.10 0.05
Matches are distributed among these distances:
92 1 0.01
93 85 0.47
94 45 0.25
96 47 0.26
97 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (93 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACAT
TTCACATTCATCACATTGGCCATTCGGC
Found at i:72085561 original size:39 final size:41
Alignment explanation
Indices: 72085469--72085609 Score: 124
Period size: 46 Copynumber: 3.2 Consensus size: 41
72085459 TCACATTGGC
* * **
72085469 CATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGG
1 CATT-GGCCTTATCACACATACACATGTTCACATTCAT-ACA---G
72085515 CCATTGGCCTTATCACACATACACATGTTCACATTCATCACATTGG
1 -CATTGGCCTTATCACACATACACATGTTCACATTCAT-ACA---G
72085561 CCATTCGGCCTTATCACACATACACATGTTCACATTCAT-CA-
1 -CATT-GGCCTTATCACACATACACATGTTCACATTCATACAG
72085602 CATTGGCC
1 CATTGGCC
72085610 ATTCGACCTT
Statistics
Matches: 89, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
39 4 0.04
40 4 0.04
45 2 0.02
46 42 0.47
47 37 0.42
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.32
Consensus pattern (41 bp):
CATTGGCCTTATCACACATACACATGTTCACATTCATACAG
Found at i:72089267 original size:40 final size:40
Alignment explanation
Indices: 72089075--72089424 Score: 534
Period size: 39 Copynumber: 8.9 Consensus size: 40
72089065 CGAATACACG
* * *
72089075 TCACCAGCATGATTGCTCTT-GGGACCTAGCCC-GATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * * *
72089113 ACACCAGCACGAATGCTCTTCGGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
72089152 TCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
72089191 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
72089230 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
*
72089270 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
72089309 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
72089349 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
72089389 TCACTAGCATGAATGCTCTT-GGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
72089425 CATTTCGAGA
Statistics
Matches: 289, Mismatches: 17, Indels: 11
0.91 0.05 0.03
Matches are distributed among these distances:
38 29 0.10
39 141 0.49
40 119 0.41
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:72089298 original size:79 final size:79
Alignment explanation
Indices: 72089075--72089424 Score: 537
Period size: 79 Copynumber: 4.5 Consensus size: 79
72089065 CGAATACACG
* * * * * * **
72089075 TCACCAGCATGATTGCTCTT-GGGACCTAGCCC-GATATAACACCAGCACGAATGCTCTTCGGGT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGAC
* *
72089138 TTAGCACGGATATA
66 TTAGCCCGGATACA
* * *
72089152 TCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATACATCACTAGCATGAATGCTCTTCGGAC
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGAC
72089216 TTAGCCCGGATACA
66 TTAGCCCGGATACA
72089230 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGAC
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGAC
72089295 TTAGCCCGGATACA
66 TTAGCCCGGATACA
72089309 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTC-GGA
*
72089374 CTTAGCCCGGATATA
65 CTTAGCCCGGATACA
72089389 TCACTAGCATGAATGCTCTT-GGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
72089425 CATTTCGAGA
Statistics
Matches: 252, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
77 19 0.08
78 72 0.29
79 124 0.49
80 37 0.15
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGAC
TTAGCCCGGATACA
Found at i:72089550 original size:38 final size:38
Alignment explanation
Indices: 72089481--72089555 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
72089471 GAATTTTAAT
*
72089481 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
72089519 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
72089556 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:72092021 original size:22 final size:22
Alignment explanation
Indices: 72091993--72092114 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
72091983 TTCCACATCC
72091993 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
72092015 ATCACATATATACACTTTC-TCATT
1 ATCACAT-T-GGC-CATTCGGCCTT
72092039 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
72092062 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
72092086 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
72092109 ATCACA
1 ATCACA
72092115 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:72092028 original size:47 final size:47
Alignment explanation
Indices: 72091965--72092268 Score: 416
Period size: 47 Copynumber: 6.4 Consensus size: 47
72091955 CCCTTCGGGA
* * *
72091965 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
72092012 CTTATCACATATATACACTTTCTCATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
72092059 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
72092106 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
72092153 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
72092200 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
72092249 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
72092269 GTACATCAAT
Statistics
Matches: 237, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 195 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:72098064 original size:24 final size:24
Alignment explanation
Indices: 72098032--72098079 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
72098022 TAGTATAGTA
72098032 ATGGCAAGACCGGGATATCGTACC
1 ATGGCAAGACCGGGATATCGTACC
72098056 ATGGCAAGACCGGGATATCGTACC
1 ATGGCAAGACCGGGATATCGTACC
72098080 CAAGGGAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.29, T:0.17
Consensus pattern (24 bp):
ATGGCAAGACCGGGATATCGTACC
Found at i:72104965 original size:51 final size:51
Alignment explanation
Indices: 72104883--72105057 Score: 221
Period size: 52 Copynumber: 3.5 Consensus size: 51
72104873 ATAGCCAGTA
* * * *
72104883 GCCTACACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTTCACAAAATG
1 GCCTTCACATAGTACCACACTTGTGA-CCAAAGCTACCTTCTTCACAAAGTG
* *
72104934 GCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCCTCACAAAGTG
1 GCCTTCACATAGTACCACACTTGTGACCAAAGCTA-CCTTCTTCACAAAGTG
* * * *
72104986 GCCTTCACATAGTACGACACTTATGACC-AAGCTATC-TCTTCTCAAAGTG
1 GCCTTCACATAGTACCACACTTGTGACCAAAGCTACCTTCTTCACAAAGTG
72105035 GCCTTCACATAGTACCACACTTG
1 GCCTTCACATAGTACCACACTTG
72105058 AGTCACTAGT
Statistics
Matches: 108, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
49 32 0.30
51 36 0.33
52 40 0.37
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (51 bp):
GCCTTCACATAGTACCACACTTGTGACCAAAGCTACCTTCTTCACAAAGTG
Found at i:72107614 original size:40 final size:40
Alignment explanation
Indices: 72107491--72107754 Score: 293
Period size: 40 Copynumber: 6.6 Consensus size: 40
72107481 TGAATGCTGC
* * * * *
72107491 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAAT
** * * *
72107531 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATA-CAAGTT
1 CCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAA-AT
* *
72107571 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTTATTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAAT
*
72107611 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAAT
* *
72107651 ACGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAAT
* * *
72107691 CCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAAT
* *
72107730 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGTTAAGTCCCGAAGGCATTTG
72107755 AACGAGGAGC
Statistics
Matches: 193, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
39 34 0.18
40 149 0.77
41 10 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAAT
Found at i:72115243 original size:78 final size:78
Alignment explanation
Indices: 72115105--72115366 Score: 264
Period size: 78 Copynumber: 3.3 Consensus size: 78
72115095 TTGAATGCTG
* * * **
72115105 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGC-GAGT-ATAAATCCGGGTTAAG-TCCCGAAGGCATT
*
72115168 TGTGCGAGATA-CAAGT
63 TGTGCGAGATATCAA-A
* *
72115184 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTATAAATCCGGGTTAAGTCCCGAAGGCATTCGT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTATAAATCCGGGTTAAGTCCCGAAGGCATTTGT
* *
72115249 GCGAGTTATTAAA
66 GCGAGATATCAAA
* *
72115262 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCA-TT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAG-TA-TAAATCCGGGTTAAGTCCCGAAGGCATTT
* *
72115326 GTGTGAGTTA-CTAAA
64 GTGCGAGATATC-AAA
* * * *
72115341 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCCTTTG
72115367 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
77 1 0.01
78 62 0.39
79 60 0.38
80 34 0.22
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTATAAATCCGGGTTAAGTCCCGAAGGCATTTGT
GCGAGATATCAAA
Found at i:72115312 original size:118 final size:119
Alignment explanation
Indices: 72115105--72115364 Score: 298
Period size: 118 Copynumber: 2.2 Consensus size: 119
72115095 TTGAATGCTG
* * *
72115105 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGATATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGATAAATCCGGACTAAGATCCGAAGGCATTC
* *
72115169 GTGCGAGATACAAGTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TA-TAAA
66 GTGCGAGATACAAGATCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGTTACTAAA
* * * **
72115222 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGA-TAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
72115285 TCGTGCGAGTTATTAA-ATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TCGTGCGAGATA-CAAGATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGTTACTAAA
* *
72115341 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
72115365 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
117 34 0.28
118 59 0.49
119 27 0.22
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGATAAATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGATACAAGATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:72115346 original size:39 final size:40
Alignment explanation
Indices: 72115105--72115364 Score: 273
Period size: 40 Copynumber: 6.6 Consensus size: 40
72115095 TTGAATGCTG
* * * * *
72115105 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-TATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
** * * * *
72115144 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATA-CAAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAA-A
* * *
72115184 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TA-TAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
72115222 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
72115262 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
72115302 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
72115341 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72115365 TGAACGAGGA
Statistics
Matches: 194, Mismatches: 21, Indels: 12
0.85 0.09 0.05
Matches are distributed among these distances:
38 29 0.15
39 62 0.32
40 103 0.53
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:72115384 original size:79 final size:80
Alignment explanation
Indices: 72115106--72115399 Score: 228
Period size: 78 Copynumber: 3.7 Consensus size: 80
72115096 TGAATGCTGT
* ** * * **
72115106 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-TATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * **
72115168 TGTGCGAGATAC-AAGTT
64 CGTGCGAGTTACTAA-AA
* * * * **
72115185 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGT-A-TAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
* *
72115248 TGCGAGTTATTAAAT
66 TGCGAGTTACTAAAA
* ** * *
72115263 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
72115327 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
72115342 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
72115400 TACGTGATTT
Statistics
Matches: 184, Mismatches: 25, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
77 1 0.01
78 79 0.43
79 69 0.38
80 35 0.19
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:72115388 original size:118 final size:117
Alignment explanation
Indices: 72115106--72115399 Score: 276
Period size: 118 Copynumber: 2.5 Consensus size: 117
72115096 TGAATGCTGT
* ** * *
72115106 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-TATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTATATCCGG-TTAAG-TCCCGAAGGCATT
* * * *
72115168 TGTGCGAGATACAAGTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTATAAAT
63 CGTGCGAGATACAAGATCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGTATAAAA
* ** * * *
72115223 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCC-GGTTAAGTCCCGAAGGCATTCG
* * * *
72115288 TGCGAGTTATTAA-ATCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAA
65 TGCGAGATA-CAAGATCCGGGTTAAGCCCCGAAGGCCATTGTGCGAG-TA-TAAAA
* * *
72115342 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTATATCCGGTTAAGTCCCGAAGG
72115400 TACGTGATTT
Statistics
Matches: 146, Mismatches: 23, Indels: 15
0.79 0.12 0.08
Matches are distributed among these distances:
117 33 0.23
118 73 0.50
119 40 0.27
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (117 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCCGGTTAAGTCCCGAAGGCATTCGT
GCGAGATACAAGATCCGGGTTAAGCCCCGAAGGCCATTGTGCGAGTATAAAA
Found at i:72120103 original size:27 final size:26
Alignment explanation
Indices: 72120021--72120117 Score: 151
Period size: 26 Copynumber: 3.7 Consensus size: 26
72120011 TCTTTAATAT
**
72120021 CTGGGGCA-AAGCCCTTTTCGGTAAA
1 CTGGGGCATAAGCCCTTTTCAATAAA
72120046 CTGGGGCATAAGCCCTTTTCAATAAA
1 CTGGGGCATAAGCCCTTTTCAATAAA
*
72120072 TTGGGGCATAAGCCCTTTCTCAATAAA
1 CTGGGGCATAAGCCCTTT-TCAATAAA
72120099 CTGGGGCATAAGCCCTTTT
1 CTGGGGCATAAGCCCTTTT
72120118 GCACTTCCTC
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
25 8 0.12
26 33 0.50
27 25 0.38
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (26 bp):
CTGGGGCATAAGCCCTTTTCAATAAA
Found at i:72120210 original size:20 final size:20
Alignment explanation
Indices: 72120167--72120213 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
72120157 TTATGAATAC
*
72120167 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAG
72120187 ATCATGTGCATATCATATC-G
1 ATCATGTGCATATCATA-CAG
72120207 ATCATGT
1 ATCATGT
72120214 ATATCAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 24 0.96
21 1 0.04
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAG
Found at i:72123141 original size:23 final size:23
Alignment explanation
Indices: 72123111--72123157 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
72123101 TCATTGATAC
72123111 TGGCACTCCATGCAACCGCACTA
1 TGGCACTCCATGCAACCGCACTA
72123134 TGGCACTCCATGCAACCGCACTA
1 TGGCACTCCATGCAACCGCACTA
72123157 T
1 T
72123158 CTCTGCCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.38, G:0.17, T:0.19
Consensus pattern (23 bp):
TGGCACTCCATGCAACCGCACTA
Found at i:72129246 original size:79 final size:81
Alignment explanation
Indices: 72129110--72129294 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
72129100 TTGAATGATG
*
72129110 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
72129174 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
72129189 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
72129251 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
72129269 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72129295 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:72129308 original size:40 final size:40
Alignment explanation
Indices: 72129111--72129294 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
72129101 TGAATGATGT
* * * *
72129111 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
72129151 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
72129191 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72129229 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72129270 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72129295 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:72129316 original size:79 final size:79
Alignment explanation
Indices: 72129111--72129327 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
72129101 TGAATGATGT
** * * * **
72129111 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
72129174 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
72129191 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
72129256 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
72129270 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
72129328 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:72137119 original size:79 final size:81
Alignment explanation
Indices: 72136983--72137167 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
72136973 TTGAATGATG
*
72136983 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
72137047 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
72137062 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
72137124 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
72137142 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72137168 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:72137181 original size:40 final size:40
Alignment explanation
Indices: 72136984--72137167 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
72136974 TGAATGATGT
* * * *
72136984 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
72137024 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
72137064 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72137102 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
72137143 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72137168 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:72137189 original size:79 final size:79
Alignment explanation
Indices: 72136984--72137200 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
72136974 TGAATGATGT
** * * * **
72136984 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
72137047 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
72137064 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
72137129 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
72137143 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
72137201 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:72140863 original size:74 final size:74
Alignment explanation
Indices: 72140742--72140897 Score: 258
Period size: 74 Copynumber: 2.1 Consensus size: 74
72140732 CCGTGTGGTC
* *
72140742 ACACACGCCCATGTCCCTAACCCGTGTAACTCTCTATTTTTCACCCAAGAACAAATTTAAGTCAC
1 ACACACGCCCATGTCCCTAACCCGTGTAACTCTCTATTTGTCACCCAAGAACAAATTCAAGTCAC
*
72140807 ATGGCCAAG
66 ACGGCCAAG
** *
72140816 ACACACGCCTGTGTCCCTAACCTGTGTAACTCTCTATTTGTCACCCAAGAACAAATTCAAGTCAC
1 ACACACGCCCATGTCCCTAACCCGTGTAACTCTCTATTTGTCACCCAAGAACAAATTCAAGTCAC
72140881 ACGGCCAAG
66 ACGGCCAAG
72140890 ACACACGC
1 ACACACGC
72140898 TCGTTTCCTG
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 76 1.00
ACGTcount: A:0.31, C:0.33, G:0.13, T:0.22
Consensus pattern (74 bp):
ACACACGCCCATGTCCCTAACCCGTGTAACTCTCTATTTGTCACCCAAGAACAAATTCAAGTCAC
ACGGCCAAG
Found at i:72142877 original size:43 final size:43
Alignment explanation
Indices: 72142726--72142877 Score: 121
Period size: 43 Copynumber: 3.5 Consensus size: 43
72142716 AATGTGTTTT
* * *
72142726 CCACATCTAGGACATTGGCATCGACT-TATGATTTACGTGTAAGA
1 CCACATCTAGGACATTGGCATTGA-TATTTGA-TTACATGTAAGA
** * * * *
72142770 CCATGTCTAGGACATTGGTA-TCATATTTGATTTCATGTAAAA
1 CCACATCTAGGACATTGGCATTGATATTTGATTACATGTAAGA
* * * *
72142812 CC-CTATTTGGGACAGTGTCATTGATATTTGATTACATGTAAGA
1 CCAC-ATCTAGGACATTGGCATTGATATTTGATTACATGTAAGA
* *
72142855 CCACATCTGGGACTTTGGCATTG
1 CCACATCTAGGACATTGGCATTG
72142878 TACGAGCTTT
Statistics
Matches: 81, Mismatches: 23, Indels: 9
0.72 0.20 0.08
Matches are distributed among these distances:
42 22 0.27
43 41 0.51
44 18 0.22
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (43 bp):
CCACATCTAGGACATTGGCATTGATATTTGATTACATGTAAGA
Found at i:72145236 original size:55 final size:53
Alignment explanation
Indices: 72145115--72145368 Score: 263
Period size: 55 Copynumber: 4.8 Consensus size: 53
72145105 CATTAGGGTT
* *
72145115 AAGGATACCATGTAAGACCATG-CAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * *
72145169 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* * * *
72145224 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
*
72145277 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * * *
72145326 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
72145369 GTACCCGTGT
Statistics
Matches: 173, Mismatches: 20, Indels: 19
0.82 0.09 0.09
Matches are distributed among these distances:
49 40 0.23
51 1 0.01
52 8 0.05
53 44 0.25
54 28 0.16
55 48 0.28
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:72145320 original size:108 final size:109
Alignment explanation
Indices: 72145122--72145321 Score: 307
Period size: 108 Copynumber: 1.8 Consensus size: 109
72145112 GTTAAGGATA
*
72145122 CCATGTAAGACCATGCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGAC
1 CCATGTAAGACCATGCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
*
72145187 CATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
72145231 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATG-CAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
72145293 ACCATGTCAAGACATGGCAATGGTAAGTT
64 ACCATGTCAAGACATGGCAATGATAAGTT
72145322 TCAAAAGGAT
Statistics
Matches: 83, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
107 3 0.04
108 48 0.58
109 22 0.27
110 10 0.12
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.23
Consensus pattern (109 bp):
CCATGTAAGACCATGCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGAC
CATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:72145581 original size:16 final size:16
Alignment explanation
Indices: 72145560--72145590 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72145550 ATAAATTTGA
72145560 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
72145576 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
72145591 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:72152788 original size:55 final size:53
Alignment explanation
Indices: 72152679--72152934 Score: 249
Period size: 55 Copynumber: 4.8 Consensus size: 53
72152669 CATTAGGGTT
** *
72152679 CAAGGATACCATGTAAGACCATG-CTAAGGTATGGTAATTGGTAAGGTTTC-TAAGG
1 CAAGGATACCATGTAAGACCATGTC-AAGACATGG-CATTGGTAA-G-TTCATAAGG
* * *
72152734 CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTT-C-ATAAGG
* * * *
72152789 CAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGG
1 C-AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGG
*
72152842 CAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA--
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCAT-AAGG
* * * *
72152892 -AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
72152935 GTAAGACGAG
Statistics
Matches: 173, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 40 0.23
51 1 0.01
52 8 0.05
53 44 0.25
54 8 0.05
55 67 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (53 bp):
CAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTCATAAGG
Found at i:72152886 original size:108 final size:110
Alignment explanation
Indices: 72152687--72152887 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
72152677 TTCAAGGATA
* * *
72152687 CCATGTAAGACCATGCTAAGGTATGGTAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
72152752 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
72152797 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
72152859 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
72152888 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.59
109 7 0.09
110 24 0.29
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:72153076 original size:16 final size:16
Alignment explanation
Indices: 72153055--72153085 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72153045 ATAAATTTGA
72153055 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
72153071 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
72153086 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:72163943 original size:25 final size:25
Alignment explanation
Indices: 72163914--72163961 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
72163904 AAGAAAAAGT
*
72163914 AAATT-AATTAGTAATAAAAATAATA
1 AAATTAAATT-GTAAGAAAAATAATA
72163939 AAATTAAATTGTAAGAAAAATAA
1 AAATTAAATTGTAAGAAAAATAA
72163962 ATGACTAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (25 bp):
AAATTAAATTGTAAGAAAAATAATA
Found at i:72163963 original size:21 final size:22
Alignment explanation
Indices: 72163903--72163963 Score: 54
Period size: 25 Copynumber: 2.6 Consensus size: 22
72163893 CTGCCAGGAG
72163903 AAAGAAAAAGTAAATTAATTAGT
1 AAAGAAAAA-TAAATTAATTAGT
*
72163926 AATAAAAATAATAAAATTAAATT-GT
1 AA-AGAAA-AAT-AAATT-AATTAGT
72163951 -AAGAAAAATAAAT
1 AAAGAAAAATAAAT
72163964 GACTAAAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
21 4 0.12
22 3 0.09
23 6 0.19
24 6 0.19
25 9 0.28
26 4 0.12
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (22 bp):
AAAGAAAAATAAATTAATTAGT
Found at i:72172222 original size:25 final size:25
Alignment explanation
Indices: 72172193--72172240 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
72172183 AAGAAAAAGT
*
72172193 AAATT-AATTAGTAATAAAAATAATA
1 AAATTAAATT-GTAAGAAAAATAATA
72172218 AAATTAAATTGTAAGAAAAATAA
1 AAATTAAATTGTAAGAAAAATAA
72172241 ACGGTTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (25 bp):
AAATTAAATTGTAAGAAAAATAATA
Found at i:72173579 original size:11 final size:11
Alignment explanation
Indices: 72173565--72173590 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
72173555 TTTTGTCCCT
72173565 TTTTTGGCTCC
1 TTTTTGGCTCC
72173576 TTTTTGGCTCC
1 TTTTTGGCTCC
72173587 TTTT
1 TTTT
72173591 AACTCTTGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.23, G:0.15, T:0.62
Consensus pattern (11 bp):
TTTTTGGCTCC
Found at i:72173579 original size:12 final size:12
Alignment explanation
Indices: 72173562--72173590 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
72173552 TTGTTTTGTC
72173562 CCTTTTTTGGCT
1 CCTTTTTTGGCT
72173574 CC-TTTTTGGCT
1 CCTTTTTTGGCT
72173585 CCTTTT
1 CCTTTT
72173591 AACTCTTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.00, C:0.28, G:0.14, T:0.59
Consensus pattern (12 bp):
CCTTTTTTGGCT
Found at i:72174626 original size:54 final size:54
Alignment explanation
Indices: 72174563--72174694 Score: 219
Period size: 54 Copynumber: 2.4 Consensus size: 54
72174553 CTTATGGCAA
* * *
72174563 GATTACCAGTCCAAGCTAAATCCCCCATTTTAGGAACTCATAAGGTGATGTCGG
1 GATTACCAGTCCAGGCTAAATCCCCCATTTTAGGAACTCAAAAAGTGATGTCGG
* *
72174617 GATTACCAGTCCAGGCTAAATCCCCCATTTTATGAACTCAAAAAGTGATGTTGG
1 GATTACCAGTCCAGGCTAAATCCCCCATTTTAGGAACTCAAAAAGTGATGTCGG
72174671 GATTACCAGTCCAGGCTAAATCCC
1 GATTACCAGTCCAGGCTAAATCCC
72174695 TTGTAATGAC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (54 bp):
GATTACCAGTCCAGGCTAAATCCCCCATTTTAGGAACTCAAAAAGTGATGTCGG
Found at i:72184584 original size:19 final size:19
Alignment explanation
Indices: 72184562--72184600 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
72184552 GCTAGTAATG
72184562 ATTGTTTTGATATACTTGT
1 ATTGTTTTGATATACTTGT
72184581 ATTGTTTTGATATACTTGT
1 ATTGTTTTGATATACTTGT
72184600 A
1 A
72184601 ATGTCATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.05, G:0.15, T:0.56
Consensus pattern (19 bp):
ATTGTTTTGATATACTTGT
Found at i:72190603 original size:39 final size:39
Alignment explanation
Indices: 72190541--72190661 Score: 188
Period size: 39 Copynumber: 3.1 Consensus size: 39
72190531 AATTATATTA
* **
72190541 CCAGCACAAAGCCTGTGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
*
72190580 CCTGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
* *
72190619 CCAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
72190658 CCAG
1 CCAG
72190662 TATCTTGCAT
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
Found at i:72198495 original size:28 final size:28
Alignment explanation
Indices: 72198457--72198530 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
72198447 GTTCAAATTG
* *
72198457 TATAGCACTAAGTGTGCGAGTTTGATTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
72198485 TATAGCACTAAGTGTGCGAGTTCGACTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
72198513 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
72198531 GGCTTATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGTTCGACTA
Found at i:72209725 original size:20 final size:21
Alignment explanation
Indices: 72209700--72209738 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
72209690 TTGTATTTTG
*
72209700 CAAAAGTTTTCTAA-TTGTTC
1 CAAAAGTTTCCTAAGTTGTTC
72209720 CAAAAGTTTCCTAAGTTGT
1 CAAAAGTTTCCTAAGTTGT
72209739 CAGTTTAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (21 bp):
CAAAAGTTTCCTAAGTTGTTC
Found at i:72213416 original size:40 final size:40
Alignment explanation
Indices: 72213311--72213565 Score: 317
Period size: 40 Copynumber: 6.5 Consensus size: 40
72213301 CGGATGATAA
* * * * *
72213311 CCGGGCTAAGTCCCGAAGCCATCTATGCAAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
72213351 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
72213390 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72213430 CCGGGCTAAGTCCCGAAGGCATTTGTGTGGAG-TACTAT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-CGAGTTACTATAT
* *
72213469 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72213509 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
72213548 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72213566 TACTTGGTTG
Statistics
Matches: 191, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
38 19 0.10
39 72 0.38
40 97 0.51
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72213476 original size:79 final size:80
Alignment explanation
Indices: 72213314--72213565 Score: 311
Period size: 79 Copynumber: 3.2 Consensus size: 80
72213304 ATGATAACCG
* * * * * *
72213314 GGCTAAGTCCCGAAGCCATCTATGCAAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGCAATTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTG
* *
72213377 CGAGTTATTATATCCG
65 CGAGTTACTATATCCA
72213393 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGT
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG-
*
72213458 GGAG-TACTAT-TCCA
65 CGAGTTACTATATCCA
* *
72213472 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
72213537 -AG-TAGCTATATCC-
66 GAGTTA-CTATATCCA
**
72213550 GGCTAAACCCCGAAGG
1 GGCTAAGTCCCGAAGG
72213566 TACTTGGTTG
Statistics
Matches: 154, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
77 4 0.03
78 18 0.12
79 108 0.70
80 21 0.14
81 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGTTACTATATCCA
Found at i:72213522 original size:119 final size:118
Alignment explanation
Indices: 72213311--72213565 Score: 338
Period size: 119 Copynumber: 2.2 Consensus size: 118
72213301 CGGATGATAA
* *
72213311 CCGGGCTAAGTCCCGAAGCCATCTATGCAAGTGACTAATTCCGGGCTAAGCCCGAAGGCAATTGT
1 CCGGGCTAAGTCCCGAAGGCATCTATGCAAGTGACTAATTCCAGGCTAAGCCCGAAGGCAATTGT
* * *
72213376 GCGAGTTATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
66 GCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
* * ** *
72213430 CCGGGCTAAGTCCCGAAGGCATTTGTGTGGAGT-ACT-ATTCCAGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATCTATG-CAAGTGACTAATTCCAGGCTAAG-CCCGAAGGCAATT
72213493 GTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAGTAGCTATAT
64 GTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAGTAGCTATAT
**
72213548 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72213566 TACTTGGTTG
Statistics
Matches: 121, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
117 16 0.13
118 22 0.18
119 80 0.66
120 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATCTATGCAAGTGACTAATTCCAGGCTAAGCCCGAAGGCAATTGT
GCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAGTAGCTATAT
Found at i:72221601 original size:40 final size:40
Alignment explanation
Indices: 72221496--72221751 Score: 326
Period size: 40 Copynumber: 6.5 Consensus size: 40
72221486 CGGATGATAA
* * *
72221496 CCGGGCTAAGTCCCGAAGGCATCTGTGCAAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
72221536 TCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
72221575 CTGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
72221615 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
*
72221655 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
72221695 CCGAGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
72221734 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72221752 TACTTGGTTG
Statistics
Matches: 191, Mismatches: 20, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
38 15 0.08
39 41 0.21
40 133 0.70
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72224230 original size:37 final size:38
Alignment explanation
Indices: 72224189--72224266 Score: 133
Period size: 38 Copynumber: 2.1 Consensus size: 38
72224179 TAGTAATGAC
72224189 TGTC-TTTTTATTATCTAGA-CTAAGAATAAAGAGGTTT
1 TGTCTTTTTTATTATCTA-ACCTAAGAATAAAGAGGTTT
72224226 TGTCTTTTTTATTATCTAACCTAAGAATAAAGAGGTTT
1 TGTCTTTTTTATTATCTAACCTAAGAATAAAGAGGTTT
72224264 TGT
1 TGT
72224267 TTTAACTAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
37 5 0.13
38 34 0.87
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (38 bp):
TGTCTTTTTTATTATCTAACCTAAGAATAAAGAGGTTT
Found at i:72224781 original size:58 final size:56
Alignment explanation
Indices: 72224693--72224802 Score: 184
Period size: 58 Copynumber: 1.9 Consensus size: 56
72224683 TTCATACAAT
*
72224693 TCAGAAAATAATAACAAGTTAAATTTATCATACAATTCAGAAAATAAGAACACATC
1 TCAGAAAATAAGAACAAGTTAAATTTATCATACAATTCAGAAAATAAGAACACATC
*
72224749 TCAGAATAATAAAGAACAAGTTAAATTTATCATACAATTCAGAAAATAATAACA
1 TCAGAA-AAT-AAGAACAAGTTAAATTTATCATACAATTCAGAAAATAAGAACA
72224803 AGATTTGTCT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
56 6 0.12
57 3 0.06
58 41 0.82
ACGTcount: A:0.55, C:0.13, G:0.07, T:0.25
Consensus pattern (56 bp):
TCAGAAAATAAGAACAAGTTAAATTTATCATACAATTCAGAAAATAAGAACACATC
Found at i:72227380 original size:47 final size:49
Alignment explanation
Indices: 72227305--72227528 Score: 202
Period size: 47 Copynumber: 4.8 Consensus size: 49
72227295 TGGGTAAGGT
* * **
72227305 GCCGATGCCATGTCCTAGACATGGTCTTATGCTGGCTCAT-ATCTC-AA
1 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCATCATCTCGAA
* * * * *
72227352 GTCGATGCCATGTCCCAGACATGATCTTACATTGACT-ATCATCCCGTA
1 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCATCATCTCGAA
* * *
72227400 GCCGATG-CATGTCCCAGACATG-TCTTACACTGGCTTA-CGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCATCATCTCGAA
*
72227446 GCCGATG-CATGTCCCA-A-AT-AGTCTTACACTAGCTC-TCATCTC-AA
1 GCCGATGCCATGTCCCAGACATGA-TCTTACACTGGCTCATCATCTCGAA
* * *
72227490 TGTCGATGCCATGTCCCAGACATGGTCTTACATTGGCTC
1 -GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTC
72227529 TTATAATGTG
Statistics
Matches: 142, Mismatches: 24, Indels: 21
0.76 0.13 0.11
Matches are distributed among these distances:
44 3 0.02
45 24 0.17
46 43 0.30
47 51 0.36
48 21 0.15
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCATCATCTCGAA
Found at i:72227497 original size:45 final size:46
Alignment explanation
Indices: 72227305--72227577 Score: 161
Period size: 47 Copynumber: 5.8 Consensus size: 46
72227295 TGGGTAAGGT
* ** * * *
72227305 GCCGATGCCATGTCCTAGACATGGTCTTATGCTGGCTCATATCTCAA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCAAG
* * * *
72227352 GTCGATGCCATGTCCCAGACATGATCTTACA-TTGAC-TATCATCCCGTA-
1 GCCGATG-CATGTCCCAGACATG-TCTTACACTAG-CTTA-CATCTC-AAG
* * *
72227400 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAG
*
72227446 GCCGATGCATGTCCCA-A-ATAGTCTTACACTAGCTCT-CATCTCAAT
1 GCCGATGCATGTCCCAGACAT-GTCTTACACTAGCT-TACATCTCAAG
* * * * *
72227491 GTCGATGCCATGTCCCAGACATGGTCTTACATTGGC-T-CTTAT-AATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCAA---G
* *
72227539 GCCGACGCATGTCCCAGACATGTCTTATACTAGCTTACA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACA
72227578 CACAAATGAC
Statistics
Matches: 178, Mismatches: 31, Indels: 33
0.74 0.13 0.14
Matches are distributed among these distances:
44 2 0.01
45 29 0.16
46 56 0.31
47 65 0.37
48 26 0.15
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCAAG
Found at i:72232530 original size:30 final size:30
Alignment explanation
Indices: 72232472--72232531 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
72232462 TTCCCGAGCC
*
72232472 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* * * *
72232502 TAGGGGTAAAAATGTGATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
72232532 CATATTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:72237648 original size:47 final size:48
Alignment explanation
Indices: 72237578--72237799 Score: 212
Period size: 46 Copynumber: 4.7 Consensus size: 48
72237568 GTAAAGTGCT
* **
72237578 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCAT-ATCTCAAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAAGCC
* *
72237625 AATGCCATGTCCCAGACATGGTCTTACACT-GACT-ATCATC-CAGTAGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCATCTCA--AGCC
* * * * *
72237673 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CGTCTCGAGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTC-AAGCC
*
72237719 GATG-CATGTCTCAGACAT-GTCTTACACTAGCTC-TCATCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAA-GCC
* *
72237765 GATGCCATGTCCCGGACATGGTCTTACACTGGCTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTC
72237800 TTATATTGTG
Statistics
Matches: 146, Mismatches: 17, Indels: 23
0.78 0.09 0.12
Matches are distributed among these distances:
45 1 0.01
46 62 0.42
47 62 0.42
48 21 0.14
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCATCTCAAGCC
Found at i:72237723 original size:46 final size:47
Alignment explanation
Indices: 72237578--72237798 Score: 186
Period size: 47 Copynumber: 4.7 Consensus size: 47
72237568 GTAAAGTGCT
* * * * * *
72237578 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCATATCTC-AAGTT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGTC
* * *
72237625 AATGCCATGTCCCAGACATGGTCTTACACTGAC-TATCATC-CAGTAGCT-
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTC-G-AGGTC
*
72237673 GATGCATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGTC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGTC
* * * * *
72237719 GATGCATGTCTCAGACAT-GTCTTACACTAGCTCT-CATCTCAATGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAGGTC
*
72237765 GATGCCATGTCCCGGACATGGTCTTACACTGGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCT
72237799 CTTATATTGT
Statistics
Matches: 143, Mismatches: 21, Indels: 19
0.78 0.11 0.10
Matches are distributed among these distances:
45 3 0.02
46 60 0.42
47 62 0.43
48 16 0.11
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGTC
Found at i:72237831 original size:94 final size:91
Alignment explanation
Indices: 72237630--72237845 Score: 233
Period size: 94 Copynumber: 2.3 Consensus size: 91
72237620 AAGTTAATGC
* * *
72237630 CATGTCCCAGACATGGTCTTACACT-GACTATCATCCAGTAGCTGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACAT-GTCTTACACTAG-CTCTCATCCAATAGCCGATGCATGTCCCAGACATGTC
* *
72237694 TTACACTGGCTTACGTCTCGAGGTCGATG
64 TTACACTGGCTTAC-TATCGAGGTCGAGG
* *
72237723 CATGTCTCAGACATGTCTTACACTAGCTCTCATCTCAAT-GCCGATGCCATGTCCCGGACATGGT
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATC-CAATAGCCGATG-CATGTCCCAGACAT-GT
* *
72237787 CTTACACTGGCTCTTA-TATTGTGG-CTGAGG
63 CTTACACTGG--CTTACTATCGAGGTC-GAGG
*
72237817 CATGTCCCAAACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
72237846 ACACACAAAT
Statistics
Matches: 105, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
92 23 0.22
93 31 0.30
94 47 0.45
96 4 0.04
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (91 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCCAATAGCCGATGCATGTCCCAGACATGTCTT
ACACTGGCTTACTATCGAGGTCGAGG
Found at i:72237835 original size:140 final size:141
Alignment explanation
Indices: 72237578--72237840 Score: 352
Period size: 140 Copynumber: 1.9 Consensus size: 141
72237568 GTAAAGTGCT
* **
72237578 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCATATCTCAAGTTAATGCCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCAATGCCATGTCCCAGACA
* * *
72237643 TGGTCTTACACTGACTATCATCCAGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
66 TGGTCTTACACTGACTATCATACAGTAGCTGAGGCATGTCCCAAACATGTCTTACACTGGCTTAC
72237708 GTCTCGAGGTC
131 GTCTCGAGGTC
* * *
72237719 GATG-CATGTCTCAGACAT-GTCTTACACTAGCTC-TCATCTCAATGCCGATGCCATGTCCCGGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAA-GCCAATGCCATGTCCCAGA
* * * ** *
72237781 CATGGTCTTACACTGGCTCTTATATTGTGGCTGAGGCATGTCCCAAACATGTCTTACACT
64 CATGGTCTTACACTGACTATCATACAGTAGCTGAGGCATGTCCCAAACATGTCTTACACT
72237841 AGCTCACACA
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
138 1 0.01
139 21 0.20
140 79 0.75
141 4 0.04
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (141 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGCCAATGCCATGTCCCAGACA
TGGTCTTACACTGACTATCATACAGTAGCTGAGGCATGTCCCAAACATGTCTTACACTGGCTTAC
GTCTCGAGGTC
Found at i:72248142 original size:40 final size:40
Alignment explanation
Indices: 72248085--72248269 Score: 325
Period size: 40 Copynumber: 4.6 Consensus size: 40
72248075 CGGATGATAA
72248085 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
72248125 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
72248165 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* ***
72248205 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
72248245 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72248270 AGCAAGTAGC
Statistics
Matches: 138, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 138 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:72256371 original size:40 final size:40
Alignment explanation
Indices: 72256314--72256531 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
72256304 CGGATGATAA
*
72256314 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
72256354 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
72256394 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * * * **
72256434 CCAGGCTAAGTCCTGAAGACAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
72256474 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATTT
**
72256514 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72256532 TACTTGGTTG
Statistics
Matches: 160, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.10
40 144 0.90
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:72260442 original size:20 final size:19
Alignment explanation
Indices: 72260414--72260466 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 19
72260404 CACAATGTGT
*
72260414 ATATAAATTATCAAATCATA
1 ATATCAATTATCAAATC-TA
*
72260434 ATATCAA-T-TCAATTCTA
1 ATATCAATTATCAAATCTA
*
72260451 ATATCATTTATCAAAT
1 ATATCAATTATCAAAT
72260467 TTACATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
17 8 0.30
18 7 0.26
19 6 0.22
20 6 0.22
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (19 bp):
ATATCAATTATCAAATCTA
Found at i:72269936 original size:22 final size:22
Alignment explanation
Indices: 72269908--72269982 Score: 82
Period size: 22 Copynumber: 3.4 Consensus size: 22
72269898 TGTAACAAGA
72269908 CATATTTTGTATTTCTGTCTTT
1 CATATTTTGTATTTCTGTCTTT
* *
72269930 CATATTTTGCATTTCACTGT-TAT
1 CATATTTTGTATTT--CTGTCTTT
* *
72269953 -ATCTTTTGTGTTTCTGTCTTT
1 CATATTTTGTATTTCTGTCTTT
72269974 CATATTTTG
1 CATATTTTG
72269983 CATGCATAGC
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
20 4 0.10
21 2 0.05
22 30 0.71
23 2 0.05
24 4 0.10
ACGTcount: A:0.15, C:0.15, G:0.11, T:0.60
Consensus pattern (22 bp):
CATATTTTGTATTTCTGTCTTT
Found at i:72270153 original size:31 final size:31
Alignment explanation
Indices: 72270118--72270179 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
72270108 AAACGAGTCA
* *
72270118 GTAATCCCGTAAAAGAATTAAAGTGAGCATT
1 GTAATCCCGAAAAAGAATTAAAGTAAGCATT
*
72270149 GTAATCTCGAAAAAGAATTAAAGTAAGCATT
1 GTAATCCCGAAAAAGAATTAAAGTAAGCATT
72270180 TGATTCAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.26
Consensus pattern (31 bp):
GTAATCCCGAAAAAGAATTAAAGTAAGCATT
Found at i:72272254 original size:30 final size:30
Alignment explanation
Indices: 72272220--72272278 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
72272210 ATTTTCGAGC
* *
72272220 ATAGGGGCAAAATGGTCATTTTGCCAAAGT
1 ATAGGGACAAAATGGTCATTTTACCAAAGT
72272250 ATAGGGACAAAATGGTCATTTTACCAAAG
1 ATAGGGACAAAATGGTCATTTTACCAAAG
72272279 GTGTAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (30 bp):
ATAGGGACAAAATGGTCATTTTACCAAAGT
Found at i:72272759 original size:93 final size:94
Alignment explanation
Indices: 72272600--72272908 Score: 284
Period size: 93 Copynumber: 3.3 Consensus size: 94
72272590 ACTTATGTAA
* ** * * *
72272600 GCTAGTGTAAGA-CATGTCTGGGACATGCATTGGCCAAAATATG-AGATCCAGT-TAAGACCATA
1 GCTAGTGTAAGACCATGTCTGGGACATGCA-TCGCCACGAGATGTAGAGCCAGTGTAAGACCATG
*
72272662 TCTGGGACATGGCATCAGCATCGAGACGAGT
65 TCTGGGACATGGCATCAGC-TCGAGATGAGT
* *
72272693 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGACCTCGAGACGTA-AGCCAGTGTAAGA-CATG
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCG-CCACGAGATGTAGAGCCAGTGTAAGACCATG
* *
72272755 TCTGGGACAT-GCATCGGCTGCGAGATGTGT
65 TCTGGGACATGGCATCAGCT-CGAGATGAGT
* ** *
72272785 -C-AGTGTAAAACCATGTCTGAAACATGGCATCTG-CACG-GTTATGTGAGAGCTAGTGTAAGAC
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATC-GCCACGAG--ATGT-AGAGCCAGTGTAAGAC
72272846 CATGTC-GGGACATGGCATCAGCCTCGAAGATGA-T
61 CATGTCTGGGACATGGCATCAG-CTCG-AGATGAGT
72272880 AGCTAGTGTAAGACCATGTCTGGGACATG
1 -GCTAGTGTAAGACCATGTCTGGGACATG
72272909 GCATTGGCAC
Statistics
Matches: 176, Mismatches: 22, Indels: 32
0.77 0.10 0.14
Matches are distributed among these distances:
90 9 0.05
91 17 0.10
92 25 0.14
93 55 0.31
94 25 0.14
95 15 0.09
96 7 0.04
97 2 0.01
98 21 0.12
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGCCACGAGATGTAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCAGCTCGAGATGAGT
Found at i:72272892 original size:48 final size:47
Alignment explanation
Indices: 72272599--72272912 Score: 226
Period size: 46 Copynumber: 6.7 Consensus size: 47
72272589 CACTTATGTA
* *** * *
72272599 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCAAAATATGAG
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCA-TCGCCTCGAGATGAT
* * * * *
72272645 ATCCAGT-TAAGACCATATCTGGGACATGGCATCAGCATCGAGACGAGT
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAGATGA-T
*
72272693 -GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGACG-T
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-CCTCGAGATGAT
* *
72272737 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTGCGAGATG-T
1 -AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCT-CGAGATGAT
* ** * *
72272783 -G-TCAGTGTAAAACCATGTCTGAAACATGGCATCTG-CACG-GTTATGTGAG
1 AGCT-AGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGAG--A--TGAT
72272832 AGCTAGTGTAAGACCATGTC-GGGACATGGCATCAGCCTCGAAGATGAT
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCG-AGATGAT
72272880 AGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 AGCTAGTGTAAGACCATGTCTGGGACATGGCAT
72272913 TGGCACCTTA
Statistics
Matches: 214, Mismatches: 30, Indels: 45
0.74 0.10 0.16
Matches are distributed among these distances:
44 11 0.05
45 22 0.10
46 78 0.36
47 27 0.13
48 30 0.14
49 24 0.11
50 20 0.09
51 1 0.00
52 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGAGATGAT
Found at i:72274779 original size:47 final size:49
Alignment explanation
Indices: 72274702--72274835 Score: 172
Period size: 46 Copynumber: 2.8 Consensus size: 49
72274692 TGTAACCCGC
*
72274702 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACAT
* * *
72274752 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
*
72274795 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC
72274836 CAAATATCCC
Statistics
Matches: 72, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
43 6 0.08
44 2 0.03
45 2 0.03
46 29 0.40
47 29 0.40
48 2 0.03
49 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACAT
Found at i:72274850 original size:46 final size:46
Alignment explanation
Indices: 72274707--72274850 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 46
72274697 CCCGCCCATA
* * *
72274707 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCC
* * *
72274755 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--C
*
72274800 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
72274846 AGTGA
1 AGTGA
72274851 CATGTCACTC
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 34 0.44
47 29 0.38
48 5 0.06
50 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
Found at i:72277293 original size:62 final size:59
Alignment explanation
Indices: 72277220--72277336 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 59
72277210 AAAGATTATC
* * * * *
72277220 TTAATATTAAATTTATTTTAATGTTTATCTTGTAGATAAATATTCTACTAATTTAATAAGAT
1 TTAATAATAAATTTAATCTAATATTTATCTT-T--ATAAATATTATACTAATTTAATAAGAT
*
72277282 TTAATAATAAATTTAATCTAATATTTATCTTTATAAGTATTATACTAATTTAATA
1 TTAATAATAAATTTAATCTAATATTTATCTTTATAAATATTATACTAATTTAATA
72277337 TTAAAGTGAT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 21 0.43
61 1 0.02
62 27 0.55
ACGTcount: A:0.41, C:0.05, G:0.04, T:0.50
Consensus pattern (59 bp):
TTAATAATAAATTTAATCTAATATTTATCTTTATAAATATTATACTAATTTAATAAGAT
Found at i:72279265 original size:12 final size:13
Alignment explanation
Indices: 72279240--72279280 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
72279230 AAGAACAAGC
*
72279240 AATTAATTTAATT
1 AATTAATGTAATT
72279253 AATTAA-GTAATT
1 AATTAATGTAATT
*
72279265 AA-TAATTTAATT
1 AATTAATGTAATT
72279277 AATT
1 AATT
72279281 GCAATAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 3 0.12
12 14 0.58
13 7 0.29
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (13 bp):
AATTAATGTAATT
Found at i:72279840 original size:20 final size:20
Alignment explanation
Indices: 72279815--72279858 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
72279805 GGTGACCAAC
72279815 TAAATAGTTTACCTGTTTTA
1 TAAATAGTTTACCTGTTTTA
72279835 TAAATAGTTTACCTGTTTTA
1 TAAATAGTTTACCTGTTTTA
72279855 TAAA
1 TAAA
72279859 GCAAGTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.48
Consensus pattern (20 bp):
TAAATAGTTTACCTGTTTTA
Found at i:72281173 original size:33 final size:33
Alignment explanation
Indices: 72281136--72281201 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
72281126 TTAAAAATAT
72281136 TTTTTTTAATTAATTCGTTAATTTTGTCAATCA
1 TTTTTTTAATTAATTCGTTAATTTTGTCAATCA
72281169 TTTTTTTAATTAATTCGTTAATTTTGTCAATCA
1 TTTTTTTAATTAATTCGTTAATTTTGTCAATCA
72281202 AATTTATATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.09, G:0.06, T:0.58
Consensus pattern (33 bp):
TTTTTTTAATTAATTCGTTAATTTTGTCAATCA
Found at i:72283819 original size:15 final size:16
Alignment explanation
Indices: 72283787--72283819 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
72283777 TTATATATGT
72283787 ATAATAAATATGTAAA
1 ATAATAAATATGTAAA
*
72283803 ATAATAATTAT-TAAA
1 ATAATAAATATGTAAA
72283818 AT
1 AT
72283820 CTATAAAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (16 bp):
ATAATAAATATGTAAA
Found at i:72292601 original size:16 final size:16
Alignment explanation
Indices: 72292580--72292613 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
72292570 TAATCTATGA
72292580 AAGCTAAGCTAGGGTT
1 AAGCTAAGCTAGGGTT
72292596 AAGCTAAGCTAGGGTT
1 AAGCTAAGCTAGGGTT
72292612 AA
1 AA
72292614 TAATTTATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (16 bp):
AAGCTAAGCTAGGGTT
Found at i:72307266 original size:43 final size:43
Alignment explanation
Indices: 72307211--72307467 Score: 390
Period size: 43 Copynumber: 6.0 Consensus size: 43
72307201 ATATCATACA
* * *
72307211 ATGCCAATGTCCCAGATATGGTCTTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
* *
72307254 ATACC-ACTGTCCCAGACAGGGTCTTACACGTAATCACATATCG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
72307297 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
* *
72307340 ATGCCAACGTCCCAGACATGGTCTTACACATAATCACATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
*
72307383 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
*
72307426 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATATC
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATC
72307468 AGAATCACAT
Statistics
Matches: 196, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
42 1 0.01
43 194 0.99
44 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:72307475 original size:13 final size:13
Alignment explanation
Indices: 72307457--72307481 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72307447 TCTTACACGT
72307457 AATCACATATCAG
1 AATCACATATCAG
72307470 AATCACATATCA
1 AATCACATATCA
72307482 ATGCCAACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.24, G:0.04, T:0.24
Consensus pattern (13 bp):
AATCACATATCAG
Found at i:72308114 original size:14 final size:15
Alignment explanation
Indices: 72308095--72308123 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72308085 GAATGAAATT
72308095 TTCACACAC-ATAAA
1 TTCACACACAATAAA
72308109 TTCACACACAATAAA
1 TTCACACACAATAAA
72308124 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.21
Consensus pattern (15 bp):
TTCACACACAATAAA
Found at i:72312760 original size:18 final size:18
Alignment explanation
Indices: 72312737--72312792 Score: 85
Period size: 18 Copynumber: 3.1 Consensus size: 18
72312727 GTTAATATTA
*
72312737 AGGTTCGCACAATAACAT
1 AGGTTCGCATAATAACAT
*
72312755 AGGTTCGTATAATAACAT
1 AGGTTCGCATAATAACAT
*
72312773 GGGTTCGCATAATAACAT
1 AGGTTCGCATAATAACAT
72312791 AG
1 AG
72312793 TGTAACATCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.27
Consensus pattern (18 bp):
AGGTTCGCATAATAACAT
Found at i:72313812 original size:22 final size:21
Alignment explanation
Indices: 72313787--72313850 Score: 57
Period size: 22 Copynumber: 3.2 Consensus size: 21
72313777 ATTGGTGGTA
72313787 TATGAGTATTGTGATGTTGACG
1 TATGAGTATTGTGATGTTGA-G
* *
72313809 TATGTG-ATTG-G-TGGT-A-
1 TATGAGTATTGTGATGTTGAG
72313825 TATGAGTATTGTGATGTTGAAG
1 TATGAGTATTGTGATGTTG-AG
72313847 TATG
1 TATG
72313851 GCTGTATATG
Statistics
Matches: 32, Mismatches: 4, Indels: 12
0.67 0.08 0.25
Matches are distributed among these distances:
16 5 0.16
17 4 0.12
18 2 0.06
19 6 0.19
20 1 0.03
21 5 0.16
22 9 0.28
ACGTcount: A:0.23, C:0.02, G:0.33, T:0.42
Consensus pattern (21 bp):
TATGAGTATTGTGATGTTGAG
Found at i:72313813 original size:38 final size:38
Alignment explanation
Indices: 72313766--72313850 Score: 161
Period size: 38 Copynumber: 2.2 Consensus size: 38
72313756 TTTGGTAAGA
72313766 TGAAGTATGTGATTGGTGGTATATGAGTATTGTGATGT
1 TGAAGTATGTGATTGGTGGTATATGAGTATTGTGATGT
*
72313804 TGACGTATGTGATTGGTGGTATATGAGTATTGTGATGT
1 TGAAGTATGTGATTGGTGGTATATGAGTATTGTGATGT
72313842 TGAAGTATG
1 TGAAGTATG
72313851 GCTGTATATG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.24, C:0.01, G:0.34, T:0.41
Consensus pattern (38 bp):
TGAAGTATGTGATTGGTGGTATATGAGTATTGTGATGT
Found at i:72316172 original size:48 final size:48
Alignment explanation
Indices: 72316104--72316386 Score: 277
Period size: 48 Copynumber: 5.9 Consensus size: 48
72316094 ATATCGGTTC
* *
72316104 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATGTCGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAGGT
* * * * * ** *
72316152 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAGGT
* * *
72316200 CGATGCCATGTTCCAAACATGGTTTTACACTGGCTCTCATATATCTGTA--T
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATATC-G-AGGT
* *
72316250 CGATGCCATGTTCCAAACATGGTCTGACACTAGCCCACATGTCGAGGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAGGT
* * * ** *
72316298 CGATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATATAAATG-
1 CGATGCCATGTTCC-AAACATGGTCTTACACTAGCCCACATATCGAGGT
* *
72316345 CTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 C-GATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATA
72316387 ACCCTATTAT
Statistics
Matches: 190, Mismatches: 36, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
46 1 0.01
47 5 0.03
48 142 0.75
49 4 0.02
50 37 0.19
52 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCCCACATATCGAGGT
Found at i:72316256 original size:98 final size:97
Alignment explanation
Indices: 72316054--72316386 Score: 316
Period size: 98 Copynumber: 3.4 Consensus size: 97
72316044 GGTAAGATAC
* * ** * * **
72316054 CGATGCCATGTCCCAGACATGGTCTTATACCGGTTCTCATATATCGGTTCCGATGCCATGTTCCA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAAAGG-T-CGATGCCATGTTCCA
* * *
72316119 AACATGGTCTTACACTAGC-C-CACATGTC-GAGGC
64 AACATGGTCTTACACTAGCTCTCATATATCTGA--T
* * * *
72316152 CAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGTCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAAAGGTCGATGCCATGTTCCAAA
* *
72316217 CATGGTTTTACACTGGCTCTCATATATCTGTAT
66 CATGGTCTTACACTAGCTCTCATATATCTG-AT
* * * * ** *
72316250 CGATGCCATGTTCCAAACATGGTCTGACACTAGCCCACATGTCGAGGTCGATGCCATG-TCCTAG
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAAAGGTCGATGCCATGTTCC-AA
** *
72316314 ACATGGTCTTACACTAGCTCTCATATAAATGCT
65 ACATGGTCTTACACTAGCTCTCATATATCTGAT
* *
72316347 -GATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATA
72316387 ACCCTATTAT
Statistics
Matches: 197, Mismatches: 33, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
96 68 0.35
97 6 0.03
98 121 0.61
99 1 0.01
100 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (97 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATAAAGGTCGATGCCATGTTCCAAA
CATGGTCTTACACTAGCTCTCATATATCTGAT
Found at i:72316318 original size:146 final size:145
Alignment explanation
Indices: 72316054--72316386 Score: 524
Period size: 146 Copynumber: 2.3 Consensus size: 145
72316044 GGTAAGATAC
* * * * *
72316054 CGATGCCATGTCCCAGACATGGTCTTATACCGGTTCTCATATATCGGTTCCGATGCCATGTTCCA
1 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTTCCGATGCCATGTTCCA
*
72316119 AACATGGTCTTACACTAGCCCACATGTCGAGGCCAATGCCATGTCCCAGACATGGTCTTACACTA
66 AACATGGTCTGACACTAGCCCACATGTCGAGGCCAATGCCATGTCCCAGACATGGTCTTACACTA
72316184 GCTCTCATATAAATG
131 GCTCTCATATAAATG
* *
72316199 TCGATGCCATGTTCCAAACATGGTTTTACACTGGCTCTCATATATCTGTAT-CGATGCCATGTTC
1 -CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGT-TCCGATGCCATGTTC
* * *
72316263 CAAACATGGTCTGACACTAGCCCACATGTCGAGGTCGATGCCATGTCCTAGACATGGTCTTACAC
64 CAAACATGGTCTGACACTAGCCCACATGTCGAGGCCAATGCCATGTCCCAGACATGGTCTTACAC
72316328 TAGCTCTCATATAAATG
129 TAGCTCTCATATAAATG
*
72316345 CTGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 C-GATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATA
72316387 ACCCTATTAT
Statistics
Matches: 172, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
145 1 0.01
146 170 0.99
147 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (145 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATATCGGTTCCGATGCCATGTTCCA
AACATGGTCTGACACTAGCCCACATGTCGAGGCCAATGCCATGTCCCAGACATGGTCTTACACTA
GCTCTCATATAAATG
Found at i:72331377 original size:44 final size:43
Alignment explanation
Indices: 72331313--72331431 Score: 125
Period size: 44 Copynumber: 2.7 Consensus size: 43
72331303 TATGTGTTTT
* *
72331313 CGTGTAAGATCATGTATGGGATGTTGGCATTGACT-TATGATTTA
1 CGTGTAAGACCATGTCTGGGATGTTGGCATTGA-TATATGA-TTA
* *
72331357 TGTGTAAGACCATGTCTGGGATAG-TGGCATTGATATTTGATTA
1 CGTGTAAGACCATGTCTGGGAT-GTTGGCATTGATATATGATTA
* * **
72331400 CATGTAAGACCACGTCTGGGACATTGGCATTG
1 CGTGTAAGACCATGTCTGGGATGTTGGCATTG
72331432 TACGAGCTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
43 30 0.48
44 32 0.51
45 1 0.02
ACGTcount: A:0.25, C:0.13, G:0.28, T:0.34
Consensus pattern (43 bp):
CGTGTAAGACCATGTCTGGGATGTTGGCATTGATATATGATTA
Found at i:72332187 original size:15 final size:16
Alignment explanation
Indices: 72332161--72332190 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
72332151 TGAAATAGGT
72332161 TGATGAATATATGATA
1 TGATGAATATATGATA
72332177 TGATG-ATATATGAT
1 TGATGAATATATGAT
72332191 TTGGGTTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (16 bp):
TGATGAATATATGATA
Found at i:72340760 original size:43 final size:44
Alignment explanation
Indices: 72340713--72340893 Score: 221
Period size: 43 Copynumber: 4.2 Consensus size: 44
72340703 TATCCCAAAT
72340713 ATGGTCTTACATGGT-ATCAC-ATATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGGTAATCACAATAT-GATGCCAATGTCCCAGAC
* * * *
72340756 ATGGTCTTACA-CGAAATCA-TATGACGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGGTAATCACAAT-ATGATGCCAATGTCCCAGAC
* *
72340799 ATTGTCTTACA-CGTAATCACAATATGATGCCAATGTCCCAGAC
1 ATGGTCTTACATGGTAATCACAATATGATGCCAATGTCCCAGAC
* *
72340842 ATGGTCTTACAT-GTAATCGCAATATGATGCCAATGTCCCAGGC
1 ATGGTCTTACATGGTAATCACAATATGATGCCAATGTCCCAGAC
*
72340885 ATAGTCTTA
1 ATGGTCTTA
72340894 TACATAATCA
Statistics
Matches: 122, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
42 1 0.01
43 118 0.97
44 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (44 bp):
ATGGTCTTACATGGTAATCACAATATGATGCCAATGTCCCAGAC
Found at i:72350965 original size:6 final size:6
Alignment explanation
Indices: 72350942--72351074 Score: 135
Period size: 6 Copynumber: 21.8 Consensus size: 6
72350932 TATCAAAACT
* * * *
72350942 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGGC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
72350991 AGAATC AGAATC AGAATT AGAATC AGAATC AGAATC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC
* * *
72351039 AGAATC AGTATC AGGTAA-C AGAATC AAAATT AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
72351075 GTGAATGCAA
Statistics
Matches: 104, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
5 3 0.03
6 93 0.89
7 6 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:72351052 original size:24 final size:24
Alignment explanation
Indices: 72350942--72351052 Score: 152
Period size: 24 Copynumber: 4.6 Consensus size: 24
72350932 TATCAAAACT
* * *
72350942 AGAATCAAAATGAGAATCAGAATC
1 AGAATCAGAATCAGAATTAGAATC
*
72350966 AGAATCAG-GTGGCAGAATTAGAATC
1 AGAATCAGAAT--CAGAATTAGAATC
72350991 AGAATCAGAATCAGAATTAGAATC
1 AGAATCAGAATCAGAATTAGAATC
72351015 AGAATCAGAATCAGAATTAGAATC
1 AGAATCAGAATCAGAATTAGAATC
*
72351039 AGAATCAGTATCAG
1 AGAATCAGAATCAG
72351053 GTAACAGAAT
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
23 1 0.01
24 57 0.73
25 19 0.24
26 1 0.01
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.20
Consensus pattern (24 bp):
AGAATCAGAATCAGAATTAGAATC
Found at i:72351312 original size:71 final size:67
Alignment explanation
Indices: 72351219--72351360 Score: 194
Period size: 67 Copynumber: 2.1 Consensus size: 67
72351209 TCACCAGATA
* * *
72351219 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATATGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATATGGCGAAGCCACCAGATTGCAGCGA
72351284 GGCTGC
62 GGCTGC
* * *
72351290 CAGATATTGTGACGAAGTCACCAGAACAGATATATCTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATATGGCGAAGCCACCAGATTGCAGCGAGGCT
72351355 GC
66 GC
72351357 CAGA
1 CAGA
72351361 ATGCTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 40 0.62
71 25 0.38
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATATGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:72351959 original size:27 final size:27
Alignment explanation
Indices: 72351576--72351949 Score: 435
Period size: 27 Copynumber: 13.9 Consensus size: 27
72351566 TAACACCCTA
** * *
72351576 AGGGTAAAATGGTAATTTTATAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* **
72351603 AGGGTAAAACGGTAATTCTGTAAATTA
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
72351630 AGGGTAAAATAGTAATTTTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* ** *
72351657 AGGTTAAAATGGTAATTCTTTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* * * *
72351684 ATGGTAAAATAGTAATTTTGTAAATTG
1 AGGGTAAAACAGTAATTCTGTAAATCG
*
72351711 AGGGTAAAACAGTAATTCTATAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* * *
72351738 AGGGTAAAACGGTAATTCTATAAATCA
1 AGGGTAAAACAGTAATTCTGTAAATCG
*
72351765 AGGGTAAAAC-GATAATTCTATAAATCG
1 AGGGTAAAACAG-TAATTCTGTAAATCG
* *
72351792 AGTGTAAAACAGTAATTCTGTAAATCA
1 AGGGTAAAACAGTAATTCTGTAAATCG
*
72351819 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
72351846 AGTGTAAAACAGTAATTCTGTAAATCA
1 AGGGTAAAACAGTAATTCTGTAAATCG
* * *
72351873 AGGGTAAAACGGTAATTCTATAAATTG
1 AGGGTAAAACAGTAATTCTGTAAATCG
*
72351900 AGGGTAAAATAGTAATTCTGTAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
72351927 AGGGTAAAATAGTAATTTTGTAA
1 AGGGTAAAACAGTAATTCTGTAA
72351950 TTTGATGGTA
Statistics
Matches: 298, Mismatches: 47, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
26 1 0.00
27 296 0.99
28 1 0.00
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.31
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTCTGTAAATCG
Found at i:72352010 original size:27 final size:27
Alignment explanation
Indices: 72351980--72352105 Score: 105
Period size: 27 Copynumber: 4.7 Consensus size: 27
72351970 TTTACATGTC
* *
72351980 GAGGGTATTTTAGTAATTTTGCAAACT
1 GAGGGTATTTCAGTAATTTTACAAACT
*
72352007 GAGGGTATTTCGGTAATTTTACAAA-T
1 GAGGGTATTTCAGTAATTTTACAAACT
* ** *
72352033 CGAGGATATTTGGGTAATTTTATAAACT
1 -GAGGGTATTTCAGTAATTTTACAAACT
* * * *
72352061 GGGGGTACTTTGA-TTATTTTGC-AACT
1 GAGGGTA-TTTCAGTAATTTTACAAACT
*
72352087 GGGGGTATTTCAGTAATTT
1 GAGGGTATTTCAGTAATTT
72352106 GGTAAACTAA
Statistics
Matches: 81, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
25 4 0.05
26 17 0.21
27 55 0.68
28 5 0.06
ACGTcount: A:0.27, C:0.08, G:0.25, T:0.40
Consensus pattern (27 bp):
GAGGGTATTTCAGTAATTTTACAAACT
Found at i:72352080 original size:54 final size:54
Alignment explanation
Indices: 72351956--72352080 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 54
72351946 GTAATTTGAT
** * * *
72351956 GGTACTTTGATAATTTTACATGTCGAGGGTATTTTAGTAATTTTGCAAACTGAG
1 GGTACTTTGATAATTTTACAAATCGAGGATATTTGAGTAATTTTACAAACTGAG
* * * *
72352010 GGTA-TTTCGGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAACTGGG
1 GGTACTTT-GATAATTTTACAAATCGAGGATATTTGAGTAATTTTACAAACTGAG
*
72352064 GGTACTTTGATTATTTT
1 GGTACTTTGATAATTTT
72352081 GCAACTGGGG
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
53 3 0.05
54 52 0.90
55 3 0.05
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.42
Consensus pattern (54 bp):
GGTACTTTGATAATTTTACAAATCGAGGATATTTGAGTAATTTTACAAACTGAG
Found at i:72352106 original size:25 final size:26
Alignment explanation
Indices: 72352057--72352106 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
72352047 TAATTTTATA
* * *
72352057 AACTGGGGGTACTTTGATTATTTTGC
1 AACTGGGGGTACTTTCAGTAATTTGC
72352083 AACTGGGGGTA-TTTCAGTAATTTG
1 AACTGGGGGTACTTTCAGTAATTTG
72352107 GTAAACTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.22, C:0.10, G:0.28, T:0.40
Consensus pattern (26 bp):
AACTGGGGGTACTTTCAGTAATTTGC
Found at i:72352529 original size:13 final size:13
Alignment explanation
Indices: 72352511--72352536 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72352501 ATATTATAAT
72352511 TATTTTATGTTAA
1 TATTTTATGTTAA
72352524 TATTTTATGTTAA
1 TATTTTATGTTAA
72352537 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:72353965 original size:40 final size:40
Alignment explanation
Indices: 72353910--72354195 Score: 493
Period size: 40 Copynumber: 7.2 Consensus size: 40
72353900 GGACAAAGAT
*
72353910 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
72353950 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
72353990 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
72354030 CCGAAGGCATCTATGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
72354070 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
72354110 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * * *
72354150 CTGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
72354189 CCGAAGG
1 CCGAAGG
72354196 TACTTGGGTT
Statistics
Matches: 234, Mismatches: 12, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 14 0.06
40 220 0.94
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:72359965 original size:43 final size:42
Alignment explanation
Indices: 72359899--72360055 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 42
72359889 AGCTCGTACA
* *
72359899 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATACCG
1 ATGCCAATATCCCAGACAGGGTCTTACATGTAATCAAATA-CG
* * *
72359942 ATGCCACTATCCCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAATATCCCAGACAGGGTCTTACATGTAATCAAATACG
* *
72359984 ATGCCAATGTCCCAGAC-GTAGTCTTACATGTAAATCATAAGT-CG
1 ATGCCAATATCCCAGACAG-GGTCTTACATGT-AATCA-AA-TACG
*
72360028 ATGCCAA-AGTCCCAGACATGGTCTTACA
1 ATGCCAATA-TCCCAGACAGGGTCTTACA
72360056 CGATAACACA
Statistics
Matches: 95, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 26 0.27
43 40 0.42
44 27 0.28
45 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAATATCCCAGACAGGGTCTTACATGTAATCAAATACG
Found at i:72360054 original size:86 final size:84
Alignment explanation
Indices: 72359899--72360058 Score: 225
Period size: 86 Copynumber: 1.9 Consensus size: 84
72359889 AGCTCGTACA
* *
72359899 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCAAATACCGATGCCACTATCCCAGACAGGGT
1 ATGCCAATGTCCCAGACATAGTCTTACATGTAATCAAATA-CGATGCCACAATCCCAGACAGGGT
72359964 CTTACACGAAATCAAATACG
65 CTTACACGAAATCAAATACG
* *
72359984 ATGCCAATGTCCCAGACGTAGTCTTACATGTAAATCATAAGT-CGATGCCA-AAGTCCCAGACAT
1 ATGCCAATGTCCCAGACATAGTCTTACATGT-AATCA-AA-TACGATGCCACAA-TCCCAGACAG
72360047 GGTCTTACACGA
62 GGTCTTACACGA
72360059 TAACACATAT
Statistics
Matches: 67, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
85 30 0.45
86 34 0.51
87 2 0.03
88 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (84 bp):
ATGCCAATGTCCCAGACATAGTCTTACATGTAATCAAATACGATGCCACAATCCCAGACAGGGTC
TTACACGAAATCAAATACG
Found at i:72365197 original size:23 final size:23
Alignment explanation
Indices: 72365144--72365191 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
72365134 ACATTACTAT
72365144 ACCATCTCGTACTAATCTCATAC
1 ACCATCTCGTACTAATCTCATAC
72365167 ACCATCTCGTACTAATCTCATAC
1 ACCATCTCGTACTAATCTCATAC
72365190 AC
1 AC
72365192 ATTCTCATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.35, G:0.04, T:0.29
Consensus pattern (23 bp):
ACCATCTCGTACTAATCTCATAC
Found at i:72370541 original size:40 final size:40
Alignment explanation
Indices: 72370448--72370703 Score: 367
Period size: 40 Copynumber: 6.5 Consensus size: 40
72370438 AAGCCAAGTA
* * *
72370448 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
72370486 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72370526 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72370566 CCTTCGGGACTTAGCTCGGATATAGTAACTCTCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72370606 CCTTCGGG-CTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72370645 CCTTCGGGACTTAGCCCGAATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72370685 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72370704 TTATCATCCA
Statistics
Matches: 196, Mismatches: 18, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
38 12 0.06
39 52 0.27
40 132 0.67
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72370627 original size:79 final size:80
Alignment explanation
Indices: 72370448--72370701 Score: 363
Period size: 79 Copynumber: 3.2 Consensus size: 80
72370438 AAGCCAAGTA
* * * * *
72370448 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCAGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
72370510 GTAACTCGCACCAATG
65 GTAACTCGCACCAATG
* *
72370526 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCTCGGATATAG
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
72370591 TAACTCTCACCAATG
66 TAACTCGCACCAATG
* * *
72370606 CCTTCGGG-CTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAATGTAA
1 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
72370670 TAACTCGCACAAATG
66 TAACTCGCACCAATG
72370685 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
72370702 GGTTATCATC
Statistics
Matches: 159, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
78 13 0.08
79 89 0.56
80 57 0.36
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACCAATG
Found at i:72370674 original size:119 final size:118
Alignment explanation
Indices: 72370448--72370700 Score: 375
Period size: 119 Copynumber: 2.1 Consensus size: 118
72370438 AAGCCAAGTA
* * * *
72370448 CCTTCGGGATTTAACCGGATATAGCTACTCGCTCAATGCCTTCGGGACATAGCCCGGATATAGTA
1 CCTTCGGGACTTAGCCGGATATAGCTACTCGCCCAATGCCTTCGGGACATAGCCCAGATATAGTA
* * *
72370513 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
66 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAATAACTCGCACAAATG
* *
72370566 CCTTCGGGACTTAGCTCGGATATAG-TAACTCTCACCAATGCCTTCGGG-CTTAGCCCAGATATA
1 CCTTCGGGACTTAGC-CGGATATAGCT-ACTCGC-CCAATGCCTTCGGGACATAGCCCAGATATA
*
72370629 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAATGTAATAACTCGCACAAATG
63 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAATAACTCGCACAAATG
72370685 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
72370701 CGGTTATCAT
Statistics
Matches: 122, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
118 15 0.12
119 94 0.77
120 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (118 bp):
CCTTCGGGACTTAGCCGGATATAGCTACTCGCCCAATGCCTTCGGGACATAGCCCAGATATAGTA
ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAATAACTCGCACAAATG
Found at i:72379165 original size:34 final size:34
Alignment explanation
Indices: 72379119--72379193 Score: 132
Period size: 34 Copynumber: 2.2 Consensus size: 34
72379109 TTGCATTTTT
*
72379119 TGATACTGTTATTGTAATGGGCTAAAGCCCACAC
1 TGATACTATTATTGTAATGGGCTAAAGCCCACAC
*
72379153 TGATACTATTATTGTAATGGGCTAAGGCCCACAC
1 TGATACTATTATTGTAATGGGCTAAAGCCCACAC
72379187 TGATACT
1 TGATACT
72379194 GGACTGTAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (34 bp):
TGATACTATTATTGTAATGGGCTAAAGCCCACAC
Found at i:72380951 original size:35 final size:35
Alignment explanation
Indices: 72380885--72381005 Score: 84
Period size: 35 Copynumber: 3.5 Consensus size: 35
72380875 ATATGAAAGC
* *
72380885 TTATATTGAACTTGAATATTTGATTACATGTG-AG
1 TTATATTGAATTTGAATATTTGATCACATGTGAAG
** * *
72380919 TTTATATTGAATTTGTGTATTTGGTCATATGTGAAG
1 -TTATATTGAATTTGAATATTTGATCACATGTGAAG
* * * * * * *
72380955 TTATCTTGAATGTGCATATTCG-GCTATATGTGATG
1 TTATATTGAATTTGAATATTTGATC-ACATGTGAAG
*
72380990 TTCTATTGAATTTGAA
1 TTATATTGAATTTGAA
72381006 CTATAGGTTA
Statistics
Matches: 67, Mismatches: 17, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
34 1 0.01
35 64 0.96
36 2 0.03
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.46
Consensus pattern (35 bp):
TTATATTGAATTTGAATATTTGATCACATGTGAAG
Found at i:72386661 original size:48 final size:48
Alignment explanation
Indices: 72386593--72386831 Score: 316
Period size: 48 Copynumber: 5.0 Consensus size: 48
72386583 AGGAGTCTTT
* * * ** *
72386593 CACCCTAAGTTCCAATATCATGGCCCGAAGCCAACTCAATGTATTTTG
1 CACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCG
* * *
72386641 CACCCGAAGTGCCAAAATCATGGCCCGAAGCCAAATTAATATAACTCG
1 CACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCG
* ** *
72386689 CACCCGAAGTGCCAACATCATGGCCCGAAGCCAAATCAAAATAACTCA
1 CACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCG
* * *
72386737 CACTCGAAGTGCTAATATCATGGCCCAAAGCCAAATCAATGTAACTCG
1 CACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCG
* *
72386785 CACTCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAACTC
1 CACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTC
72386832 CTAATGTCAT
Statistics
Matches: 170, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 170 1.00
ACGTcount: A:0.35, C:0.29, G:0.16, T:0.20
Consensus pattern (48 bp):
CACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATGTAACTCG
Found at i:72391280 original size:15 final size:15
Alignment explanation
Indices: 72391257--72391298 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
72391247 CATGGAACAT
*
72391257 GTGGACGTGGTACTC
1 GTGGCCGTGGTACTC
72391272 GTGGCCGTGGTACTC
1 GTGGCCGTGGTACTC
*
72391287 GTTGCCGTGGTA
1 GTGGCCGTGGTA
72391299 GAGTCCATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.10, C:0.21, G:0.40, T:0.29
Consensus pattern (15 bp):
GTGGCCGTGGTACTC
Found at i:72391795 original size:32 final size:32
Alignment explanation
Indices: 72391759--72391823 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
72391749 GAAAGTTAGT
*
72391759 TATGTAGATGCTCGTAGGCGCGAGTTCATGAA
1 TATGTAGATACTCGTAGGCGCGAGTTCATGAA
* *
72391791 TATGTGGATACTCGTAGGCGTGAGTTCATGAA
1 TATGTAGATACTCGTAGGCGCGAGTTCATGAA
72391823 T
1 T
72391824 CTCACACAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.31
Consensus pattern (32 bp):
TATGTAGATACTCGTAGGCGCGAGTTCATGAA
Found at i:72394113 original size:40 final size:40
Alignment explanation
Indices: 72394051--72394308 Score: 378
Period size: 40 Copynumber: 6.5 Consensus size: 40
72394041 AAACCAAGTA
* * * *
72394051 CCTTCGGGATTTA-ACCGGATATAGTTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
72394090 CCTTCGGGACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72394130 CCTTCGGGACTTAGCCCGGATATCA-TAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGTAACTCGCACAAATG
72394170 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72394210 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72394250 CCTTCGGGACTTAACCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72394290 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72394309 TTATCATCCG
Statistics
Matches: 199, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.07
40 184 0.92
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Done.