Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 222 of 325
Found at i:72403335 original size:40 final size:41
Alignment explanation
Indices: 72403200--72403385 Score: 243
Period size: 41 Copynumber: 4.6 Consensus size: 41
72403190 TACTCGAATG
*
72403200 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
72403241 ATATCCGAGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* * *
72403282 ACATCCGGACTAAGAT-CCGAATGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* * *
72403322 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
72403362 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
72403386 CTTGTGCGAG
Statistics
Matches: 129, Mismatches: 14, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 61 0.47
41 66 0.51
42 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:72403340 original size:81 final size:82
Alignment explanation
Indices: 72403202--72403355 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 82
72403192 CTCGAATGAT
* * *
72403202 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGAGCTAAGTCCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGAGCTAAGTCCCGAAGGCAT
*
72403267 TTGTGCTAAGCGACTAC
66 TTATGCTAAGCGACTAC
* *
72403284 ATCCGGACTAAGAT-CCGAATGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTATATCCGAGCTAAGTCCCGAAGGCA
72403347 TTTATGCTA
65 TTTATGCTA
72403356 GTGACCATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 38 0.58
82 26 0.40
83 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGAGCTAAGTCCCGAAGGCAT
TTATGCTAAGCGACTAC
Found at i:72404843 original size:40 final size:40
Alignment explanation
Indices: 72404783--72405040 Score: 394
Period size: 40 Copynumber: 6.5 Consensus size: 40
72404773 AAACCAAGTA
* * * *
72404783 CCTTCGGGATTTA-ACCGGATATAGTTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* **
72404822 CCTTCGGAACTTAGCCCGGATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72404862 CCTTCGGGACTTAGCCCGGATATCGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72404902 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72404942 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72404982 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72405022 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72405041 TTATCATCCG
Statistics
Matches: 201, Mismatches: 16, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
39 12 0.06
40 189 0.94
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72415916 original size:16 final size:16
Alignment explanation
Indices: 72415895--72415928 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
72415885 TCTACTTGGC
72415895 TAACTCAATTCATTTT
1 TAACTCAATTCATTTT
72415911 TAACTCAATTCATTTT
1 TAACTCAATTCATTTT
72415927 TA
1 TA
72415929 CATATTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (16 bp):
TAACTCAATTCATTTT
Found at i:72429053 original size:15 final size:15
Alignment explanation
Indices: 72429033--72429064 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
72429023 TGTTACAAAC
72429033 TTAGTTTGGAAATCA
1 TTAGTTTGGAAATCA
72429048 TTAGTTTGGAAATCA
1 TTAGTTTGGAAATCA
72429063 TT
1 TT
72429065 TCATGTGCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (15 bp):
TTAGTTTGGAAATCA
Found at i:72430793 original size:31 final size:31
Alignment explanation
Indices: 72430757--72430818 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
72430747 TTAATCGATG
72430757 AACAAATGAAACTCCCTTACTAAAAATCAAT
1 AACAAATGAAACTCCCTTACTAAAAATCAAT
72430788 AACAAATGAAACTCCCTTACTAAAAATCAAT
1 AACAAATGAAACTCCCTTACTAAAAATCAAT
72430819 CGAACCGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.52, C:0.23, G:0.03, T:0.23
Consensus pattern (31 bp):
AACAAATGAAACTCCCTTACTAAAAATCAAT
Found at i:72436239 original size:79 final size:79
Alignment explanation
Indices: 72436102--72436288 Score: 315
Period size: 79 Copynumber: 2.4 Consensus size: 79
72436092 TATTCGGATG
* *
72436102 ATAACCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
72436167 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
*
72436181 ATAACCGGGCTAAGTCCCGAAGGCATTTGTG-GAGTTACT-ATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAG-CCCGAAGGC
72436244 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
72436260 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
72436289 AGCAAGTAGC
Statistics
Matches: 103, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
77 2 0.02
78 17 0.17
79 84 0.82
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:72436310 original size:79 final size:79
Alignment explanation
Indices: 72436102--72436311 Score: 313
Period size: 79 Copynumber: 2.7 Consensus size: 79
72436092 TATTCGGATG
* *
72436102 ATAACCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGT-GACTA-ATTCCGGGCTAAGCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATA-TCCGGGCTAAGCCCGAAGGC
72436165 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
*
72436181 ATAACCGGGCTAAGTCCCGAAGGCATTTGTG-GAGTTA-CTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGGCTAAG-CCCGAAGGC
72436244 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
*
72436260 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAA
72436312 ATTTCGAAGG
Statistics
Matches: 121, Mismatches: 4, Indels: 12
0.88 0.03 0.09
Matches are distributed among these distances:
78 16 0.13
79 95 0.79
80 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:72436321 original size:39 final size:40
Alignment explanation
Indices: 72436102--72436288 Score: 299
Period size: 39 Copynumber: 4.7 Consensus size: 40
72436092 TATTCGGATG
* * *
72436102 ATAACCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
72436142 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72436181 ATAACCGGGCTAAGTCCCGAAGGCATTTGTG-GAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
72436220 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
72436260 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
72436289 AGCAAGTAGC
Statistics
Matches: 136, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
39 72 0.53
40 64 0.47
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:72442007 original size:41 final size:41
Alignment explanation
Indices: 72441960--72442096 Score: 193
Period size: 41 Copynumber: 3.3 Consensus size: 41
72441950 TTCTATAAAC
*
72441960 TACACATATGTGCCCCTATTTGTACTTCAGTACCCCTGAAT
1 TACACATACGTGCCCCTATTTGTACTTCAGTACCCCTGAAT
* ** * *
72442001 TGCACATTTGTGCCCCTGTTTGTACTTCAGTACCCCTAAAT
1 TACACATACGTGCCCCTATTTGTACTTCAGTACCCCTGAAT
* **
72442042 TACACATACATGCCCCTATTTGTACTTTGGTACCCCTGAAT
1 TACACATACGTGCCCCTATTTGTACTTCAGTACCCCTGAAT
72442083 TACACATACGTGCC
1 TACACATACGTGCC
72442097 ACTGTTTACA
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 83 1.00
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.34
Consensus pattern (41 bp):
TACACATACGTGCCCCTATTTGTACTTCAGTACCCCTGAAT
Found at i:72443745 original size:22 final size:22
Alignment explanation
Indices: 72443720--72443769 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
72443710 ATTATGATGA
*
72443720 TTGATAAGT-TGTGATTGATATT
1 TTGATAAGTACGTGATT-ATATT
*
72443742 TTGATATGTACGTGATTATATT
1 TTGATAAGTACGTGATTATATT
72443764 TGTGAT
1 T-TGAT
72443770 GATCTCACAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.26, C:0.02, G:0.22, T:0.50
Consensus pattern (22 bp):
TTGATAAGTACGTGATTATATT
Found at i:72447558 original size:34 final size:34
Alignment explanation
Indices: 72447515--72447582 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
72447505 AGACTCGGTT
72447515 TTGACTTGAATTAATTGTTTTAAAATGGCTTGTA
1 TTGACTTGAATTAATTGTTTTAAAATGGCTTGTA
72447549 TTGACTTGAATTAATTGTTTTAAAATGGCTTGTA
1 TTGACTTGAATTAATTGTTTTAAAATGGCTTGTA
72447583 AATATGTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.06, G:0.18, T:0.47
Consensus pattern (34 bp):
TTGACTTGAATTAATTGTTTTAAAATGGCTTGTA
Found at i:72450181 original size:10 final size:10
Alignment explanation
Indices: 72450153--72450185 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 10
72450143 AATTGGGAAC
72450153 ATTTA-AAAA
1 ATTTAGAAAA
72450162 ATTTAGGAAAA
1 ATTTA-GAAAA
72450173 ATTTAGAAAA
1 ATTTAGAAAA
72450183 ATT
1 ATT
72450186 CAACTACAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 5 0.23
10 8 0.36
11 9 0.41
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (10 bp):
ATTTAGAAAA
Found at i:72452309 original size:27 final size:26
Alignment explanation
Indices: 72452274--72452412 Score: 188
Period size: 27 Copynumber: 5.2 Consensus size: 26
72452264 AGCATAGCTG
* *
72452274 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
72452300 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
72452328 CTAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
72452355 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
72452382 CCAGATCAGATAATTGTGGCACAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
72452409 CCAG
1 CCAG
72452413 GATGCTTCCT
Statistics
Matches: 103, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
26 6 0.06
27 81 0.79
28 16 0.16
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:72453389 original size:25 final size:24
Alignment explanation
Indices: 72453354--72453412 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 24
72453344 CAACACTGCC
* *
72453354 CTCCCTAATCAGCTCCTAAAACTT
1 CTCCCTTATCAGCTCATAAAACTT
*
72453378 CTCCCCTTATCAGCTCATAAATCTT
1 CT-CCCTTATCAGCTCATAAAACTT
72453403 CTCCCTTATC
1 CTCCCTTATC
72453413 CCCTCCTTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 10 0.32
25 21 0.68
ACGTcount: A:0.24, C:0.39, G:0.03, T:0.34
Consensus pattern (24 bp):
CTCCCTTATCAGCTCATAAAACTT
Found at i:72459738 original size:27 final size:26
Alignment explanation
Indices: 72459703--72459814 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
72459693 AGCATAGCTG
*
72459703 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
72459729 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
72459757 CCAGAACAGATATATGTGACAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * *
72459784 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
72459811 CCAG
1 CCAG
72459815 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:72459767 original size:54 final size:54
Alignment explanation
Indices: 72459703--72459814 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 54
72459693 AGCATAGCTG
*
72459703 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* *
72459757 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
72459811 CCAG
1 CCAG
72459815 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
54 35 0.65
55 19 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:72461159 original size:25 final size:24
Alignment explanation
Indices: 72461124--72461182 Score: 91
Period size: 25 Copynumber: 2.4 Consensus size: 24
72461114 CAACATTGCC
*
72461124 CTCCCTAATCAGCTCCTAAAACTT
1 CTCCCTTATCAGCTCCTAAAACTT
*
72461148 CTCCCCTTATCAGCTCCTAAATCTT
1 CT-CCCTTATCAGCTCCTAAAACTT
72461173 CTCCCTTATC
1 CTCCCTTATC
72461183 CCCTCCTTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 10 0.31
25 22 0.69
ACGTcount: A:0.22, C:0.41, G:0.03, T:0.34
Consensus pattern (24 bp):
CTCCCTTATCAGCTCCTAAAACTT
Found at i:72461188 original size:24 final size:25
Alignment explanation
Indices: 72461126--72461189 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
72461116 ACATTGCCCT
* *
72461126 CCCTAATCAGCTCCTAAAACTTCTC
1 CCCTTATCACCTCCTAAAACTTCTC
* *
72461151 CCCTTATCAGCTCCTAAATCTTCT-
1 CCCTTATCACCTCCTAAAACTTCTC
*
72461175 CCCTTATCCCCTCCT
1 CCCTTATCACCTCCT
72461190 TACTCAATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
24 13 0.37
25 22 0.63
ACGTcount: A:0.20, C:0.44, G:0.03, T:0.33
Consensus pattern (25 bp):
CCCTTATCACCTCCTAAAACTTCTC
Found at i:72464238 original size:42 final size:42
Alignment explanation
Indices: 72464130--72464296 Score: 149
Period size: 43 Copynumber: 3.9 Consensus size: 42
72464120 TCGTACAATG
* * * * *
72464130 CCAACGTCCCAGA-AGTGGTCTTACATGTAATCAATTATCGATG
1 CCAATGTCCCAGATA-TGGTCTTACACGAAATCAAATAT-GATA
* * *
72464173 CCACTATCCCAGATAGGGTCTTACACGAAATCAAATATGATA
1 CCAATGTCCCAGATATGGTCTTACACGAAATCAAATATGATA
** * * *
72464215 CTGATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATG
1 CCAATGTCCCAGATATGGTCTTACACG-AAA--TCAAATATGATA
*
72464259 CCAATGTCCCAGATGTGGTCTTACACGAAATCAAATAT
1 CCAATGTCCCAGATATGGTCTTACACGAAATCAAATAT
72464297 CGAAAATCCT
Statistics
Matches: 98, Mismatches: 21, Indels: 11
0.75 0.16 0.08
Matches are distributed among these distances:
41 6 0.06
42 24 0.24
43 35 0.36
44 27 0.28
45 6 0.06
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (42 bp):
CCAATGTCCCAGATATGGTCTTACACGAAATCAAATATGATA
Found at i:72464494 original size:28 final size:28
Alignment explanation
Indices: 72464454--72464510 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
72464444 AATAAATCAA
72464454 TTCAAACACATTTATTTGTATATAGACT
1 TTCAAACACATTTATTTGTATATAGACT
72464482 TTCAAACACATTTATTTGTATATAGACT
1 TTCAAACACATTTATTTGTATATAGACT
72464510 T
1 T
72464511 ACCTCGTACG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (28 bp):
TTCAAACACATTTATTTGTATATAGACT
Found at i:72465425 original size:13 final size:13
Alignment explanation
Indices: 72465407--72465431 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72465397 CACAAACGAT
72465407 AAAATTTTCATAC
1 AAAATTTTCATAC
72465420 AAAATTTTCATA
1 AAAATTTTCATA
72465432 GATATCAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (13 bp):
AAAATTTTCATAC
Found at i:72465661 original size:12 final size:13
Alignment explanation
Indices: 72465644--72465674 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
72465634 CCGTGCGTTC
72465644 TTTCTTC-TTTCT
1 TTTCTTCTTTTCT
72465656 TTTCTTCTTTTCT
1 TTTCTTCTTTTCT
72465669 TTTCTT
1 TTTCTT
72465675 TAATTTTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTCTTCTTTTCT
Found at i:72468744 original size:26 final size:26
Alignment explanation
Indices: 72468715--72468768 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
72468705 CATCATAATT
72468715 CTTATCAAAATTTTAATACGACCTTA
1 CTTATCAAAATTTTAATACGACCTTA
72468741 CTTATCAAAATTTTAATACGACCTTA
1 CTTATCAAAATTTTAATACGACCTTA
72468767 CT
1 CT
72468769 AACATCCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.20, G:0.04, T:0.39
Consensus pattern (26 bp):
CTTATCAAAATTTTAATACGACCTTA
Found at i:72469184 original size:26 final size:26
Alignment explanation
Indices: 72469155--72469232 Score: 120
Period size: 26 Copynumber: 3.0 Consensus size: 26
72469145 CCTATATATT
*
72469155 CACCAGCTTAAAGCCTGCTAAATAAA
1 CACCAGCTCAAAGCCTGCTAAATAAA
* *
72469181 CACCAACTCAAAGCCTGCTAAATAAT
1 CACCAGCTCAAAGCCTGCTAAATAAA
*
72469207 CACCGGCTCAAAGCCTGCTAAATAAA
1 CACCAGCTCAAAGCCTGCTAAATAAA
72469233 TATGTAACAG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.41, C:0.29, G:0.12, T:0.18
Consensus pattern (26 bp):
CACCAGCTCAAAGCCTGCTAAATAAA
Found at i:72470576 original size:41 final size:41
Alignment explanation
Indices: 72470525--72470867 Score: 456
Period size: 41 Copynumber: 8.3 Consensus size: 41
72470515 TATTCGGGCT
*
72470525 TTATTACCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
72470566 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * * *
72470607 TTATTGCCTAGTAGGCTTTGTACCGGTGTTTTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * * *
72470648 TTATTGCCTAGCAGGCTTTGTGTCGGTGTTTTAAATCTGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * * * * *
72470689 TTATTACCTAGTAGACTTTGTGCCAGTGTATTAAATCATGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
72470730 TTTTTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
72470771 TTATTGCCTAGCAGGCTTTATATGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGC-TT-TGTGCCGGTGTATTATATCAGGC
* * *
72470814 TTATTACCTAGCAGGCTCTATGCCGGTGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
72470855 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
72470868 AATTTTATGT
Statistics
Matches: 269, Mismatches: 29, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
40 2 0.01
41 227 0.84
42 3 0.01
43 37 0.14
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.38
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:72474186 original size:40 final size:40
Alignment explanation
Indices: 72474103--72474365 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
72474093 TTGAATGCTG
* * * * * *
72474103 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
72474143 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
72474183 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
72474223 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
72474263 TCCGGGTTAAGTCCCGAAGGCAGTCATGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
72474303 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
72474342 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
72474366 TGAACGAGGA
Statistics
Matches: 197, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.17
40 155 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:72474385 original size:79 final size:80
Alignment explanation
Indices: 72474142--72474400 Score: 242
Period size: 80 Copynumber: 3.3 Consensus size: 80
72474132 AAGTGAATAT
* * * * * * *
72474142 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
* * *
72474206 TCGTGCGAGTTA-TTAA
65 TCATGCGAG-GAGCTAA
* * *
72474222 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** *
72474287 CATGCGAGTTGTTAA
66 CATGCGAGGAGCTAA
* * *
72474302 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCA-T
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
72474365 -TTGAACGAGGAGCTAT
66 CATG--CGAGGAGCTAA
*
72474381 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
72474401 TACGTGATTT
Statistics
Matches: 154, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
77 2 0.01
78 15 0.10
79 45 0.29
80 92 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CATGCGAGGAGCTAA
Found at i:72476470 original size:20 final size:20
Alignment explanation
Indices: 72476447--72476484 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72476437 TTACAAAAGT
* *
72476447 ACGTGTTTAGAAGATTAATA
1 ACGTGATTAGAAAATTAATA
72476467 ACGTGATTAGAAAATTAA
1 ACGTGATTAGAAAATTAA
72476485 ATGAATCAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (20 bp):
ACGTGATTAGAAAATTAATA
Found at i:72480554 original size:41 final size:41
Alignment explanation
Indices: 72480508--72480851 Score: 467
Period size: 41 Copynumber: 8.3 Consensus size: 41
72480498 TATTCGGGCT
72480508 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
*
72480549 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAAGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * * *
72480590 TTATTGCCTAGCAAGCTTTGTGCCGGTGTTTTAAATCAAGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
72480631 TTATTGCCTAGCACGCTTTTGTGCCGGTGTATTAAATCAGGC
1 TTATTGCCTAGCAGGC-TTTGTGCCGGTGTATTATATCAGGC
* * *
72480673 TTATTGCCTAGCAGGCTTTGTTCCGGTGTTTTAAATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* *
72480714 TTATTGCCTAGTAGGCTTTATGCCGGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
* * *
72480755 TTATTGCCTAGCAGGCTTTATATCTCAGTGTATTATATCAGGC
1 TTATTGCCTAGCAGGCTTTGT-GC-CGGTGTATTATATCAGGC
* * *
72480798 TTATTGCCTAGTAGGCTCTGTGCCAGTGTATTATA-CTAGGC
1 TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATC-AGGC
72480839 TT-TATGCCTAGCA
1 TTAT-TGCCTAGCA
72480852 AATTTTATGT
Statistics
Matches: 275, Mismatches: 23, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
40 2 0.01
41 198 0.72
42 40 0.15
43 35 0.13
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.38
Consensus pattern (41 bp):
TTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCAGGC
Found at i:72480732 original size:124 final size:124
Alignment explanation
Indices: 72480508--72480830 Score: 461
Period size: 124 Copynumber: 2.6 Consensus size: 124
72480498 TATTCGGGCT
72480508 TTATTGCCTAGCAGGC-TTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGC
1 TTATTGCCTAGCAGGCTTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGC
* * *
72480572 CGGTGTATTATATCAAGCTTATTGCCTAGCAAGCTTTGTGCCGGTGTTTTAAATCAAGC
66 CGGTGTATTAAATCAAGCTTATTGCCTAGCAAGCTTTATGCCGGTGTATTAAATCAAGC
* * *
72480631 TTATTGCCTAGCACGCTTTTGTGCCGGTGTATTAAATCAGGCTTATTGCCTAGCAGGCTTTGTTC
1 TTATTGCCTAGCAGGCTTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGC
* * * * * *
72480696 CGGTGTTTTAAATCAGGCTTATTGCCTAGTAGGCTTTATGCCGGTGTATTATATCAGGC
66 CGGTGTATTAAATCAAGCTTATTGCCTAGCAAGCTTTATGCCGGTGTATTAAATCAAGC
* * * *
72480755 TTATTGCCTAGCAGGCTTTATAT-CTCAGTGTATTATATCAGGCTTATTGCCTAGTAGGCTCTGT
1 TTATTGCCTAGCAGGCTTT-TGTGC-CGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGT
*
72480819 GCCAGTGTATTA
64 GCCGGTGTATTA
72480831 TACTAGGCTT
Statistics
Matches: 176, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
123 15 0.09
124 115 0.65
125 46 0.26
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.38
Consensus pattern (124 bp):
TTATTGCCTAGCAGGCTTTTGTGCCGGTGTATTATATCAGGCTTATTGCCTAGCAGGCTTTGTGC
CGGTGTATTAAATCAAGCTTATTGCCTAGCAAGCTTTATGCCGGTGTATTAAATCAAGC
Found at i:72482415 original size:26 final size:26
Alignment explanation
Indices: 72482385--72482440 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
72482375 TGAAATGCCC
*
72482385 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72482411 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72482437 ATCA
1 ATCA
72482441 ATTTTTATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:72487490 original size:27 final size:26
Alignment explanation
Indices: 72487455--72487544 Score: 110
Period size: 27 Copynumber: 3.4 Consensus size: 26
72487445 AGCATGGCTG
* *
72487455 CCAGAACAGAAAATGTGACAGAGTCA
1 CCAGAACAGAAAATGTGGCAGAGCCA
*
72487481 CCAGATACAGATAATCGTGGCA-AGCCA
1 CCAGA-ACAGAAAAT-GTGGCAGAGCCA
72487508 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGAAA-ATGTGGCAGAGCCA
*
72487535 CCAGATCAGA
1 CCAGAACAGA
72487545 TAATTGTGCG
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
26 17 0.31
27 33 0.60
28 5 0.09
ACGTcount: A:0.41, C:0.23, G:0.23, T:0.12
Consensus pattern (26 bp):
CCAGAACAGAAAATGTGGCAGAGCCA
Found at i:72487518 original size:53 final size:54
Alignment explanation
Indices: 72487455--72487565 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
72487445 AGCATGGCTG
*
72487455 CCAGAACAGAAA-ATGTGACAGAGTCACCAGATACAGATAATCGTG-GCA-AGCCA
1 CCAGAACAGAAATATGTGACAGAGCCACCAGAT-CAGATAATCGTGCG-ATAGCCA
* *
72487508 CCAGAACAGAAATATGTGGCAGAGCCACCAGATCAGATAATTGTGCGATAGCCA
1 CCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGCGATAGCCA
72487562 CCAG
1 CCAG
72487566 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
53 24 0.46
54 28 0.54
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.14
Consensus pattern (54 bp):
CCAGAACAGAAATATGTGACAGAGCCACCAGATCAGATAATCGTGCGATAGCCA
Found at i:72487552 original size:27 final size:26
Alignment explanation
Indices: 72487455--72487565 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
72487445 AGCATGGCTG
* * *
72487455 CCAGAACAGAAAATGTGACAGAGTCA
1 CCAGAACAGAAATTGTGGCAGAGCCA
*
72487481 CCAGATACAGATAATCGTGGCA-AGCCA
1 CCAGA-ACAGA-AATTGTGGCAGAGCCA
72487508 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGAAAT-TGTGGCAGAGCCA
* *
72487535 CCAGATCAGATAATTGT-GCGATAGCCA
1 CCAGAACAGA-AATTGTGGC-AGAGCCA
72487562 CCAG
1 CCAG
72487566 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
25 3 0.04
26 18 0.25
27 41 0.57
28 10 0.14
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.14
Consensus pattern (26 bp):
CCAGAACAGAAATTGTGGCAGAGCCA
Found at i:72488492 original size:24 final size:24
Alignment explanation
Indices: 72488465--72488535 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
72488455 CTAGATTTCC
** *
72488465 TCCCTTATCTGCTCCTAAATCCTT
1 TCCCTTATCAACTCCTAAATCCTA
72488489 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
72488513 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
72488536 CTCCTGACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.24, C:0.38, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:72488505 original size:48 final size:48
Alignment explanation
Indices: 72488442--72488535 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
72488432 ACCTCCTGTT
* * **
72488442 CCTTGATCAGCTCCTAGATTTCC-TCCCTTATCTGCTCCTAAATCCTTTC
1 CCTTGATCAACTCCTA-A-ATCCATCCCTTATCAACTCCTAAATCCTTTC
72488491 CCTT-ATCAACTCCTAAATCCTATCCCTTATCAACTCCTAAATCCT
1 CCTTGATCAACTCCTAAATCC-ATCCCTTATCAACTCCTAAATCCT
72488536 CTCCTGACAG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
47 1 0.03
48 31 0.79
49 4 0.10
ACGTcount: A:0.22, C:0.37, G:0.04, T:0.36
Consensus pattern (48 bp):
CCTTGATCAACTCCTAAATCCATCCCTTATCAACTCCTAAATCCTTTC
Found at i:72492918 original size:17 final size:19
Alignment explanation
Indices: 72492889--72492923 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
72492879 GATCTTTCTC
72492889 ACGCTTCTACCT-CTCAGT
1 ACGCTTCTACCTCCTCAGT
72492907 ACGCTT-TACCTCCTCAG
1 ACGCTTCTACCTCCTCAG
72492924 CTATCTTAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.17, C:0.40, G:0.11, T:0.31
Consensus pattern (19 bp):
ACGCTTCTACCTCCTCAGT
Found at i:72493868 original size:11 final size:10
Alignment explanation
Indices: 72493848--72493882 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
72493838 AGTACAGACA
72493848 AATAATTCAG
1 AATAATTCAG
72493858 AATATATTCAG
1 AATA-ATTCAG
*
72493869 AAAAATTCAG
1 AATAATTCAG
72493879 AATA
1 AATA
72493883 CTTACAGGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.29
Consensus pattern (10 bp):
AATAATTCAG
Found at i:72494992 original size:28 final size:27
Alignment explanation
Indices: 72494937--72495048 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
72494927 AGCATGGCTG
* *
72494937 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
72494963 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
72494991 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * * *
72495018 CTAGATCAGATAATTGTGTCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
72495045 CCAG
1 CCAG
72495049 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 47 0.64
28 18 0.25
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:72495028 original size:54 final size:54
Alignment explanation
Indices: 72494937--72495048 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
72494927 AGCATGGCTG
* *
72494937 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * * * *
72494991 CCAGAACAGAAATATGTGGCAGAGCCACTAGAT-CAGATAATTGTGTCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
72495045 CCAG
1 CCAG
72495049 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:72496420 original size:24 final size:24
Alignment explanation
Indices: 72496393--72496463 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
72496383 TTATATTTCC
**
72496393 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
72496417 TCCCTTATCAACTCCTAAATCCTC
1 TCCCTTATCAACTCCTAAATCCTA
*
72496441 TCCCTTACCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
72496464 CTCCTAACAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.24, C:0.41, G:0.01, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:72496464 original size:24 final size:24
Alignment explanation
Indices: 72496404--72496467 Score: 110
Period size: 24 Copynumber: 2.7 Consensus size: 24
72496394 CCCTTATCTG
* *
72496404 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTCTCCCTTACCAA
72496428 CTCCTAAATCCTCTCCCTTACCAA
1 CTCCTAAATCCTCTCCCTTACCAA
72496452 CTCCTAAATCCTCTCC
1 CTCCTAAATCCTCTCC
72496468 TAACAGACTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.25, C:0.44, G:0.00, T:0.31
Consensus pattern (24 bp):
CTCCTAAATCCTCTCCCTTACCAA
Found at i:72497998 original size:27 final size:27
Alignment explanation
Indices: 72497968--72498105 Score: 167
Period size: 27 Copynumber: 5.1 Consensus size: 27
72497958 ACGAAGTCAT
72497968 CAGATACAGATATTGTGGCAGAGCCAC
1 CAGATACAGATATTGTGGCAGAGCCAC
*
72497995 CAGA-ACAAATATATGTGGCAGAGCCAC
1 CAGATACAGATAT-TGTGGCAGAGCCAC
* *
72498022 CAGAT-CAGATAATTTTGGCATAGCCAC
1 CAGATACAGAT-ATTGTGGCAGAGCCAC
*
72498049 CAG-GACAGATATATGTGGCAGAGCCAC
1 CAGATACAGATAT-TGTGGCAGAGCCAC
*
72498076 CAGAT-CAGATAATTGTGGCATAGCCAC
1 CAGATACAGAT-ATTGTGGCAGAGCCAC
72498103 CAG
1 CAG
72498106 GACGCTTCCT
Statistics
Matches: 95, Mismatches: 9, Indels: 14
0.81 0.08 0.12
Matches are distributed among these distances:
26 9 0.09
27 82 0.86
28 4 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATACAGATATTGTGGCAGAGCCAC
Found at i:72498106 original size:54 final size:54
Alignment explanation
Indices: 72497968--72498108 Score: 230
Period size: 54 Copynumber: 2.6 Consensus size: 54
72497958 ACGAAGTCAT
* *
72497968 CAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAAATATATGTGGCAGAGCCAC
1 CAGAT-CAGATAATTGTGGCATAGCCACCAGGACAAATATATGTGGCAGAGCCAC
* *
72498022 CAGATCAGATAATTTTGGCATAGCCACCAGGACAGATATATGTGGCAGAGCCAC
1 CAGATCAGATAATTGTGGCATAGCCACCAGGACAAATATATGTGGCAGAGCCAC
72498076 CAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CAGATCAGATAATTGTGGCATAGCCACCAGGAC
72498109 GCTTCCTCCA
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 5 0.06
54 76 0.94
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CAGATCAGATAATTGTGGCATAGCCACCAGGACAAATATATGTGGCAGAGCCAC
Found at i:72498510 original size:8 final size:8
Alignment explanation
Indices: 72498494--72498523 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
72498484 CTCAAAATAC
72498494 CGGCTTTT
1 CGGCTTTT
*
72498502 CGGCATTT
1 CGGCTTTT
72498510 CGGCTTTT
1 CGGCTTTT
72498518 CGGCTT
1 CGGCTT
72498524 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:72499734 original size:26 final size:26
Alignment explanation
Indices: 72499704--72499785 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
72499694 TGAAATGCCC
72499704 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72499730 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
72499756 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
72499782 ATCA
1 ATCA
72499786 ATTTTTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:72504102 original size:27 final size:27
Alignment explanation
Indices: 72504064--72504263 Score: 258
Period size: 27 Copynumber: 7.4 Consensus size: 27
72504054 AACCCTAATC
* *
72504064 GGTAAAATGACTATTTTTCGCTTATGA
1 GGTAAAATGACTATTTTGCCCTTATGA
* *
72504091 GGTAAAATGACTATTTTGCGCTTTTGA
1 GGTAAAATGACTATTTTGCCCTTATGA
*
72504118 GGTAAAATGACTATTTTGCCCTTCTGA
1 GGTAAAATGACTATTTTGCCCTTATGA
*
72504145 GGTAAAATGACTGTTTTGCCCTTATGA
1 GGTAAAATGACTATTTTGCCCTTATGA
* * * *
72504172 GGTAAAATGATTGTTTTTCCCTGATGA
1 GGTAAAATGACTATTTTGCCCTTATGA
*
72504199 GGTAAAATGACTGTTTTGCCCTTATGA
1 GGTAAAATGACTATTTTGCCCTTATGA
* *
72504226 GGTAAAATGATTGTTTTGCCCTTAT-A
1 GGTAAAATGACTATTTTGCCCTTATGA
*
72504252 TGGTAAGATGAC
1 -GGTAAAATGAC
72504264 CAATATGCCT
Statistics
Matches: 157, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
26 1 0.01
27 156 0.99
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCCTTATGA
Found at i:72504662 original size:18 final size:19
Alignment explanation
Indices: 72504598--72504656 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 19
72504588 TGGGTAGGAC
* *
72504598 CTGCATACTGCACTAAGTA
1 CTGCATACTGCACTGATTA
*
72504617 CTGCGTACTGCACTGATTA
1 CTGCATACTGCACTGATTA
*
72504636 -TGCATACTGCACTGGTTA
1 CTGCATACTGCACTGATTA
72504654 CTG
1 CTG
72504657 TTACTGTACT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
18 16 0.47
19 18 0.53
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (19 bp):
CTGCATACTGCACTGATTA
Found at i:72508976 original size:27 final size:27
Alignment explanation
Indices: 72508872--72509057 Score: 166
Period size: 27 Copynumber: 6.9 Consensus size: 27
72508862 TAAGACCCTA
*
72508872 ATTTGTAAAATTATCGAAATA-CCTTCA
1 ATTTGTAAAATTATCGAAATACCCTT-G
* ***
72508899 ATTTGTAAAATTA-CTAAAATACCCCCA
1 ATTTGTAAAATTATC-GAAATACCCTTG
72508926 ATTTGTAAAATTATCGAAATACCCTTG
1 ATTTGTAAAATTATCGAAATACCCTTG
*
72508953 ATTTTTAAAATTATCGAAATACCCTT-
1 ATTTGTAAAATTATCGAAATACCCTTG
* * * *
72508979 ATGGTGTAAAATTACCAAAATACCTTTG
1 AT-TTGTAAAATTATCGAAATACCCTTG
* *
72509007 -TGGTGTAAAATTAACGAAATACCCTTG
1 AT-TTGTAAAATTATCGAAATACCCTTG
* *
72509034 -TAGTGTAAAATTACCGAAATACCC
1 AT-TTGTAAAATTATCGAAATACCC
72509058 CTGTAGGGTA
Statistics
Matches: 136, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.02
27 130 0.96
28 3 0.02
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (27 bp):
ATTTGTAAAATTATCGAAATACCCTTG
Found at i:72509069 original size:54 final size:54
Alignment explanation
Indices: 72508958--72509071 Score: 158
Period size: 54 Copynumber: 2.1 Consensus size: 54
72508948 CCTTGATTTT
* * **
72508958 TAAAATTATCGAAATACCCTTATGGTGTAAAATTACCAAAATACCTTTGTGGTG
1 TAAAATTAACGAAATACCCTTATAGTGTAAAATTACCAAAATACCCCTGTGGTG
* *
72509012 TAAAATTAACGAAATACCCTTGTAGTGTAAAATTACCGAAATACCCCTGTAGG-G
1 TAAAATTAACGAAATACCCTTATAGTGTAAAATTACCAAAATACCCCTGT-GGTG
72509066 TAAAAT
1 TAAAAT
72509072 GACTATTTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 51 0.96
55 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (54 bp):
TAAAATTAACGAAATACCCTTATAGTGTAAAATTACCAAAATACCCCTGTGGTG
Found at i:72520632 original size:26 final size:26
Alignment explanation
Indices: 72520603--72520657 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
72520593 CACACCAATG
72520603 ACCTGCACTTAAACTCATAACCAAAT
1 ACCTGCACTTAAACTCATAACCAAAT
72520629 ACCTGCACTTAAACTCATAACCAAAT
1 ACCTGCACTTAAACTCATAACCAAAT
72520655 ACC
1 ACC
72520658 AACCATTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.42, C:0.33, G:0.04, T:0.22
Consensus pattern (26 bp):
ACCTGCACTTAAACTCATAACCAAAT
Found at i:72523185 original size:41 final size:41
Alignment explanation
Indices: 72523121--72523424 Score: 414
Period size: 41 Copynumber: 7.3 Consensus size: 41
72523111 ACATAAAATT
*
72523121 TGCTAGGC-ATAAAGCCT-AGTATAATACACCAGCACAAAGCC
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCACAAAGCC
* * * *
72523162 TACTAGGCAATAAGCCTGATATAATACACTGGCATATAAAGTC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCC
72523205 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* * *
72523246 TGCTAGGCAATAAGCCTGATTTAATACACCGGCATATAAAGTC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGC--ACAAAGCC
* *
72523289 TGCTAGGCAATAAGCCTGATATAATACATCAGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
* *
72523330 TGCTAGGCAATAAGCCTGATATAATGCACCTGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
72523371 TGCTAGGCAATAAGCCTGATATAATACACTGGCACAAAGCC
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
72523412 TGCTAGGAAATAA
1 TGCTAGGCAATAA
72523425 AGCCCGAATA
Statistics
Matches: 233, Mismatches: 24, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
41 157 0.67
42 3 0.01
43 73 0.31
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (41 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:72523254 original size:84 final size:84
Alignment explanation
Indices: 72523121--72523424 Score: 447
Period size: 84 Copynumber: 3.6 Consensus size: 84
72523111 ACATAAAATT
*
72523121 TGCTAGGC-ATAAAGCCT-AGTATAATACACCAGCACAAAGCCTACTAGGCAATAAGCCTGATAT
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCAGCACAAAGCCTGCTAGGCAATAAGCCTGATAT
72523184 AATACACTGGCATATAAAGTC
64 AATACACTGGCATATAAAGTC
* *
72523205 TGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCAATAAGCCTGATTTAA
1 TGCTAGGCAATAAGCCTGATATAATACACCAGCACAAAGCCTGCTAGGCAATAAGCCTGATATAA
*
72523270 TACACCGGCATATAAAGTC
66 TACACTGGCATATAAAGTC
*
72523289 TGCTAGGCAATAAGCCTGATATAATACATCAGCACAAAGCCTGCTAGGCAATAAGCCTGATATAA
1 TGCTAGGCAATAAGCCTGATATAATACACCAGCACAAAGCCTGCTAGGCAATAAGCCTGATATAA
* * *
72523354 TGCACCT-GC--ACAAAGCC
66 TACA-CTGGCATATAAAGTC
** *
72523371 TGCTAGGCAATAAGCCTGATATAATACACTGGCACAAAGCCTGCTAGGAAATAA
1 TGCTAGGCAATAAGCCTGATATAATACACCAGCACAAAGCCTGCTAGGCAATAA
72523425 AGCCCGAATA
Statistics
Matches: 202, Mismatches: 15, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
82 56 0.28
84 142 0.70
85 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (84 bp):
TGCTAGGCAATAAGCCTGATATAATACACCAGCACAAAGCCTGCTAGGCAATAAGCCTGATATAA
TACACTGGCATATAAAGTC
Found at i:72523343 original size:125 final size:126
Alignment explanation
Indices: 72523121--72523404 Score: 391
Period size: 125 Copynumber: 2.3 Consensus size: 126
72523111 ACATAAAATT
* * * *
72523121 TGCTAGGC-ATAAAGCCT-AGTATAATACACCAGC--ACAAAGCCTACTAGGCAATAAGCCTGAT
1 TGCTAGGCAAT-AAGCCTGA-TATAATACACCGGCATATAAAGTCTGCTAGGCAATAAGCCTGAT
* * *
72523182 ATAATACACTGGCATATAAAGTCTGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
64 ATAATACACT-GCACACAAAGCCTGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
72523246 TGCTAGGCAATAAGCCTGATTTAATACACCGGCATATAAAGTCTGCTAGGCAATAAGCCTGATAT
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGTCTGCTAGGCAATAAGCCTGATAT
* *
72523311 AATACA-T-CAGCACAAAGCCTGCTAGGCAATAAGCCTGATATAATGCACCTGCACAAAGCC
66 AATACACTGCA-CACAAAGCCTGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
*
72523371 TGCTAGGCAATAAGCCTGATATAATACACTGGCA
1 TGCTAGGCAATAAGCCTGATATAATACACCGGCA
72523405 CAAAGCCTGC
Statistics
Matches: 142, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
124 2 0.01
125 103 0.73
126 4 0.03
127 33 0.23
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (126 bp):
TGCTAGGCAATAAGCCTGATATAATACACCGGCATATAAAGTCTGCTAGGCAATAAGCCTGATAT
AATACACTGCACACAAAGCCTGCTAGGCAATAAGCCTGATATAATACACCGGCACAAAGCC
Found at i:72534446 original size:14 final size:14
Alignment explanation
Indices: 72534427--72534460 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
72534417 AGATAAACTG
72534427 TATAGAGATGTGCC
1 TATAGAGATGTGCC
72534441 TATAGAGATGTGCC
1 TATAGAGATGTGCC
72534455 TATAGA
1 TATAGA
72534461 AACTCAAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.29
Consensus pattern (14 bp):
TATAGAGATGTGCC
Found at i:72537574 original size:27 final size:27
Alignment explanation
Indices: 72537123--72537574 Score: 505
Period size: 27 Copynumber: 16.7 Consensus size: 27
72537113 CTCGATTAGC
*
72537123 AAAATTACTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
72537150 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
72537177 GAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * *
72537204 GAAATTACCAAAATACCCTTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * ** *
72537231 GAAATTACTAAAATA-CCCTCGACTAGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
*
72537258 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * **
72537285 GAAATTATCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * **
72537312 GAAATTACTAAAATA-CCCTCGACTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
72537339 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* ** *
72537366 AAAATTATCAAAATACCCCTAATTTTT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
72537393 GAAATTACCAAAATACCTCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
72537420 GAAATTACCAAAATACCCCTTGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
**
72537447 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
** ***
72537474 AAAATTACTGAAATA-CCCTCACCTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
* **
72537501 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
72537528 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
72537555 AAAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
72537575 ATATGGTAGA
Statistics
Matches: 362, Mismatches: 57, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
26 11 0.03
27 340 0.94
28 11 0.03
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:72537595 original size:27 final size:27
Alignment explanation
Indices: 72537595--72537745 Score: 185
Period size: 27 Copynumber: 5.6 Consensus size: 27
72537585 ATTATTAAAA
* *
72537595 TGTAGGGTAGAGTTACTAAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
**
72537622 TGTACAGTAGAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
*
72537649 TGTAGGGTAGAATTACCGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
*
72537676 TGTAGGGTAGAAATACTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
* * * * *
72537703 TGTAGGGTAGAGTTACCGAGATAACCT
1 TGTAGGGTAGAATTACTGAAATACCCC
* *
72537730 TGTGGGGTAAAATTAC
1 TGTAGGGTAGAATTAC
72537746 CATTTTGCCC
Statistics
Matches: 106, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCC
Found at i:72542591 original size:40 final size:40
Alignment explanation
Indices: 72542536--72542692 Score: 280
Period size: 40 Copynumber: 3.9 Consensus size: 40
72542526 TGGATGATAA
* *
72542536 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
72542576 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
72542616 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
72542656 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
72542693 GAATTTTTGC
Statistics
Matches: 114, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
40 113 0.99
41 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72550031 original size:40 final size:40
Alignment explanation
Indices: 72549967--72550184 Score: 305
Period size: 40 Copynumber: 5.5 Consensus size: 40
72549957 CGGATGATAA
* * *
72549967 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
72550007 TCGGGCTAAGTCCCGAATGAATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
72550047 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
72550087 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
72550127 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
72550167 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
72550185 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.09
40 145 0.91
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72568997 original size:40 final size:40
Alignment explanation
Indices: 72568935--72569150 Score: 285
Period size: 40 Copynumber: 5.4 Consensus size: 40
72568925 AAGCCAAGTA
* * * *
72568935 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
72568974 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72569014 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72569054 CCTTCAGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
72569094 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72569134 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
72569151 AGTTATCATC
Statistics
Matches: 157, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 13 0.08
40 144 0.92
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72577183 original size:40 final size:40
Alignment explanation
Indices: 72577113--72577330 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
72577103 AAGCCAAGTA
* * * *
72577113 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
72577152 CCTTCGGGACATAGCCCAGATATAATAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72577192 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72577232 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
72577272 CCTTCGAGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
72577312 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
72577331 TTATCATCAA
Statistics
Matches: 158, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 13 0.08
40 145 0.92
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72589493 original size:25 final size:26
Alignment explanation
Indices: 72589465--72589517 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
72589455 ATACATCATT
72589465 AATTTA-TTACATACA-CATTCTTTTA
1 AATTTATTTACATA-ATCATTCTTTTA
*
72589490 AATTTATTTACATAATCATTTTTTTA
1 AATTTATTTACATAATCATTCTTTTA
72589516 AA
1 AA
72589518 ATCTGTTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (26 bp):
AATTTATTTACATAATCATTCTTTTA
Found at i:72589858 original size:8 final size:8
Alignment explanation
Indices: 72589845--72589873 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
72589835 AGTGATTTTA
72589845 AATTCATC
1 AATTCATC
72589853 AATTCATC
1 AATTCATC
72589861 AATTCATC
1 AATTCATC
72589869 AATTC
1 AATTC
72589874 TTCTATTATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (8 bp):
AATTCATC
Found at i:72602914 original size:27 final size:26
Alignment explanation
Indices: 72602874--72602933 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
72602864 ACACATATAT
* *
72602874 ATATCTCTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
72602900 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
72602927 ATATCTG
1 ATATCTG
72602934 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:72612411 original size:174 final size:176
Alignment explanation
Indices: 72612022--72612432 Score: 571
Period size: 174 Copynumber: 2.3 Consensus size: 176
72612012 AAAAGAGGCG
* * * *
72612022 AATCTTATCTCCATGTATCGGCAATAGAGCATATTTAAGCCCCGAGCCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCATGTATCGGCAATGGAGCAAATTTAAGCCCCGAGCCTTATCTCCCTGAAATTA
* * *
72612087 CAGTGGAGCGGGTTCGAGATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAAATTAAAGATT
66 CAGTGGAGCGGGTTCAAAATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAAACTAAAGA-T
*
72612152 GAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGGAAGAGGTG
130 GAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGGAAGAGGTA
* ** *
72612199 AATTTTATCTCCATGTATTAGCAATGGAACAAATTTAAGCCCTCGAGCCTTATCTCCCTGAAATT
1 AATCTTATCTCCATGTATCGGCAATGGAGCAAATTTAAGCCC-CGAGCCTTATCTCCCTGAAATT
* ** *
72612264 ACAGTGGAGTGGGTTCAAAATACAAGTCTTATCTTCCTGTGGTAGCAAGGAAGCAGACT-AA-A-
65 ACAGTGGAGCGGGTTCAAAATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAAACTAAAGAT
* *
72612326 GAAGATCTTATTTCCCTAAGCAGTAGTGGAGCAGATC-GAAGATGGTA
130 GAAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGGAAGA-GGTA
* *
72612373 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACC-AGCCTTATCTCTCTGA
1 AATCTTATCTCCATGTATCGGCAATGGAGCAAATTTAAGCC-CCGAGCCTTATCTCCCTGA
72612433 GGTAGCAAGA
Statistics
Matches: 207, Mismatches: 24, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
173 20 0.10
174 75 0.36
175 1 0.00
176 1 0.00
177 38 0.18
178 72 0.35
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (176 bp):
AATCTTATCTCCATGTATCGGCAATGGAGCAAATTTAAGCCCCGAGCCTTATCTCCCTGAAATTA
CAGTGGAGCGGGTTCAAAATACAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAAACTAAAGATG
AAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGGAAGAGGTA
Found at i:72630580 original size:46 final size:46
Alignment explanation
Indices: 72630527--72630702 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
72630517 TATTTGGGCA
*
72630527 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *** * * ** *
72630573 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
72630620 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
72630666 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72630703 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
46 70 0.68
47 33 0.32
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:72630682 original size:93 final size:93
Alignment explanation
Indices: 72630523--72630694 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
72630513 AGGATATTTG
* * *
72630523 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
*
72630588 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
72630616 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
72630681 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
72630695 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:72637701 original size:19 final size:19
Alignment explanation
Indices: 72637679--72637718 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
72637669 GTTGTCTTGA
72637679 TTTAATTCGGTTGATAATG
1 TTTAATTCGGTTGATAATG
72637698 TTTAATTCGGTTGATAATG
1 TTTAATTCGGTTGATAATG
72637717 TT
1 TT
72637719 ATAGAGTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.25, C:0.05, G:0.20, T:0.50
Consensus pattern (19 bp):
TTTAATTCGGTTGATAATG
Found at i:72639441 original size:29 final size:28
Alignment explanation
Indices: 72639386--72639441 Score: 76
Period size: 29 Copynumber: 2.0 Consensus size: 28
72639376 ACGGGCAACC
72639386 ACACGAGAGTGTCTAGGCCATGTGAAAG
1 ACACGAGAGTGTCTAGGCCATGTGAAAG
* * *
72639414 ACACGAGCGTGTGCTTGGCCGTGTGAAA
1 ACACGAGAGTGT-CTAGGCCATGTGAAA
72639442 ACCCTTGTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 11 0.46
29 13 0.54
ACGTcount: A:0.27, C:0.20, G:0.34, T:0.20
Consensus pattern (28 bp):
ACACGAGAGTGTCTAGGCCATGTGAAAG
Found at i:72640023 original size:44 final size:43
Alignment explanation
Indices: 72639958--72640114 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 43
72639948 TGTGTTATCC
* *
72639958 TGTAAGACCACGTCTGAGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATC-A-TATTTGATTTACA
*
72640002 TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTT-CG
1 TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTTACA
* *
72640044 CGTAAGACC-CTGTCTGGGATAG-TGGCATCAATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATC-ATATTTGATTTACA
* *
72640087 AGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
72640115 TGTAGGAGCT
Statistics
Matches: 97, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
41 1 0.01
42 27 0.28
43 40 0.41
44 29 0.30
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTTACA
Found at i:72640909 original size:24 final size:23
Alignment explanation
Indices: 72640865--72640909 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
72640855 TTATGGAATG
*
72640865 ACATGAATTGGTATGTGTTATGA
1 ACATGAATTGGTATGTATTATGA
72640888 ACATGAGATTGGT-TGATATTAT
1 ACATGA-ATTGGTATG-TATTAT
72640910 CATAGCATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.31, C:0.04, G:0.24, T:0.40
Consensus pattern (23 bp):
ACATGAATTGGTATGTATTATGA
Found at i:72642501 original size:14 final size:14
Alignment explanation
Indices: 72642482--72642508 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
72642472 TATCAAGACA
72642482 ATAATTAAGAACAC
1 ATAATTAAGAACAC
72642496 ATAATTAAGAACA
1 ATAATTAAGAACA
72642509 AGCCAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
ATAATTAAGAACAC
Found at i:72642887 original size:13 final size:13
Alignment explanation
Indices: 72642869--72642895 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
72642859 GCTTGGCAGG
72642869 GACACGCCCGTGT
1 GACACGCCCGTGT
72642882 GACACGCCCGTGT
1 GACACGCCCGTGT
72642895 G
1 G
72642896 CTATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:72645995 original size:15 final size:15
Alignment explanation
Indices: 72645975--72646003 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
72645965 CCTAGAGTTG
72645975 GTTGTTTTTAGTCTA
1 GTTGTTTTTAGTCTA
72645990 GTTGTTTTTAGTCT
1 GTTGTTTTTAGTCT
72646004 CAAGAGAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.07, G:0.21, T:0.62
Consensus pattern (15 bp):
GTTGTTTTTAGTCTA
Found at i:72647199 original size:34 final size:34
Alignment explanation
Indices: 72647150--72647223 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 34
72647140 AGTGCCACGA
72647150 TTCACAACTCAGTATGGAAACACCATACCTACAT
1 TTCACAACTCAGTATGGAAACACCATACCTACAT
* * * *
72647184 TTCACAGCTCGGTATGGAAATACCATACCTACGT
1 TTCACAACTCAGTATGGAAACACCATACCTACAT
72647218 TTCACA
1 TTCACA
72647224 CTTTGCCATG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (34 bp):
TTCACAACTCAGTATGGAAACACCATACCTACAT
Found at i:72647448 original size:31 final size:32
Alignment explanation
Indices: 72647379--72647647 Score: 306
Period size: 31 Copynumber: 8.5 Consensus size: 32
72647369 AGTGTAGCTA
* *
72647379 AAGCTACCACTTATCACTTG-TCACTTGTAGC-CG
1 AAGCTACCACTTTTCAC-TGATCA--GGTAGCTCG
* *
72647412 AAGCTACCACTATTCACTGATCAGGTAGCTAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTCG
*
72647444 -AGCTACCACTTTTCACTTG-TCACTTGTAGC-CG
1 AAGCTACCACTTTTCAC-TGATCA--GGTAGCTCG
* *
72647476 AAGCTACCACTATTCACTAATCAGGTAGCT-G
1 AAGCTACCACTTTTCACTGATCAGGTAGCTCG
* * *
72647507 GAGCTACCACTTTTCATTAATCAGGTAGC-CG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTCG
* *
72647538 AAGCTACTACTTTTCACTGATCAGGTAAC-CG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTCG
72647569 AAGCTACCACTTTTCACTGATCAGGTAG-TCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTCG
72647600 AAGCTACCACTTTTCACTGATCAGGTAGCT-G
1 AAGCTACCACTTTTCACTGATCAGGTAGCTCG
72647631 AAGCTACCACTTTTCAC
1 AAGCTACCACTTTTCAC
72647648 ATTGTACACA
Statistics
Matches: 205, Mismatches: 20, Indels: 24
0.82 0.08 0.10
Matches are distributed among these distances:
31 156 0.76
32 8 0.04
33 41 0.20
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.29
Consensus pattern (32 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCTCG
Found at i:72647647 original size:62 final size:63
Alignment explanation
Indices: 72647372--72647652 Score: 356
Period size: 62 Copynumber: 4.4 Consensus size: 63
72647362 TCAGATAAGT
* * *
72647372 GTAGCTAAAGCTACCACTTATCACTTGTCACTTGTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTTGTCAC-GGTAGCCGAAGCTACCACTATTCACTGATCAG
* *
72647436 GTAGCT-AGAGCTACCACTTTTCACTTGTCACTTGTAGCCGAAGCTACCACTATTCACTAATCAG
1 GTAGCTGA-AGCTACCACTTTTCACTTGTCAC-GGTAGCCGAAGCTACCACTATTCACTGATCAG
* * * *
72647500 GTAGCTGGAGCTACCACTTTTCA-TTAATCA-GGTAGCCGAAGCTACTACTTTTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTT-GTCACGGTAGCCGAAGCTACCACTATTCACTGATCAG
* * * *
72647562 GTAACCGAAGCTACCACTTTTCAC-TGATCA-GGTAGTCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCTGAAGCTACCACTTTTCACTTG-TCACGGTAGCCGAAGCTACCACTATTCACTGATCAG
72647624 GTAGCTGAAGCTACCACTTTTCACATTGT
1 GTAGCTGAAGCTACCACTTTTCAC-TTGT
72647653 ACACACAAGG
Statistics
Matches: 194, Mismatches: 16, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
62 104 0.54
63 4 0.02
64 86 0.44
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.30
Consensus pattern (63 bp):
GTAGCTGAAGCTACCACTTTTCACTTGTCACGGTAGCCGAAGCTACCACTATTCACTGATCAG
Found at i:72647719 original size:33 final size:33
Alignment explanation
Indices: 72647640--72647753 Score: 106
Period size: 33 Copynumber: 3.5 Consensus size: 33
72647630 GAAGCTACCA
* * * *
72647640 CTTTTCACA-TTGTACACACAAGGCGTACACTTC
1 CTTTTC-CAGTTGTACCCACAAAGTGTACATTTC
* *
72647673 CTTTTCAAG-TGTACCCACAAAGTGTACGTTTC
1 CTTTTCCAGTTGTACCCACAAAGTGTACATTTC
* ** * *
72647705 TTTTTTTAGTTGTACACACACAGTGTACATTTC
1 CTTTTCCAGTTGTACCCACAAAGTGTACATTTC
72647738 CTTTTCCAGTTGTACC
1 CTTTTCCAGTTGTACC
72647754 TTTTAGGTAC
Statistics
Matches: 63, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
32 25 0.40
33 38 0.60
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (33 bp):
CTTTTCCAGTTGTACCCACAAAGTGTACATTTC
Found at i:72647773 original size:33 final size:32
Alignment explanation
Indices: 72647729--72647809 Score: 87
Period size: 32 Copynumber: 2.5 Consensus size: 32
72647719 CACACACAGT
*
72647729 GTACATTTCCTTTTCCAGTTGT-A-CCTTTTAG
1 GTACATTTCCTTTTCAAG-TGTCACCCTTTTAG
72647760 GTACATATATCCTTTTCAAGTGTCACCCTTTTAG
1 GTACAT-T-TCCTTTTCAAGTGTCACCCTTTTAG
*
72647794 GTGA-AATTCCTTTTCA
1 GT-ACATTTCCTTTTCA
72647810 TAATGAGATC
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
31 6 0.14
32 13 0.30
33 12 0.28
34 11 0.26
35 1 0.02
ACGTcount: A:0.21, C:0.22, G:0.12, T:0.44
Consensus pattern (32 bp):
GTACATTTCCTTTTCAAGTGTCACCCTTTTAG
Found at i:72656151 original size:26 final size:26
Alignment explanation
Indices: 72656110--72656172 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
72656100 TAAACATCAT
* * *
72656110 CGGCTCAAAGCCTGCTAAATAAACAG
1 CGGCTCAAGGCATGCTAAATAAACAC
72656136 CGGCTCAAGGCATGCTAAATAAACAC
1 CGGCTCAAGGCATGCTAAATAAACAC
*
72656162 CGACTCAAGGC
1 CGGCTCAAGGC
72656173 TTGATATTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.37, C:0.29, G:0.21, T:0.14
Consensus pattern (26 bp):
CGGCTCAAGGCATGCTAAATAAACAC
Found at i:72664493 original size:47 final size:46
Alignment explanation
Indices: 72664421--72664780 Score: 231
Period size: 47 Copynumber: 7.7 Consensus size: 46
72664411 TGATTTGTGC
* * *
72664421 GCCAGTGTAAGACATGTCTAGGACATGCTTTGGCCA-CCTTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATCC-TATGAGA
* * *
72664467 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCCAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATCC-TATGAGA
** * * *
72664515 GCTTGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATCCTATGAGA
*** *
72664561 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAT-CCTATGAGA
* * *
72664609 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAC-A-GAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-CCTATGAG--A
* * * *
72664656 GCCAATGTAAGACGTGTCTGGGACATGCATC-G--A--CTAAGAGTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATCCTATGA---GA
* * *
72664700 GCTAGTGTAAGACATGTCTGGGACATGCATCAG-CA-CGCGTATATAAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATC-C---TATGAGA
*
72664748 GCCAGTGTAAGACCATGTTTGGGACATGGCATC
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
72664781 CGCAATATAA
Statistics
Matches: 248, Mismatches: 42, Indels: 44
0.74 0.13 0.13
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
43 2 0.01
44 28 0.11
45 4 0.02
46 42 0.17
47 94 0.38
48 55 0.22
49 13 0.05
50 5 0.02
51 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATCCTATGAGA
Found at i:72664586 original size:94 final size:92
Alignment explanation
Indices: 72664424--72664780 Score: 395
Period size: 94 Copynumber: 3.8 Consensus size: 92
72664414 TTTGTGCGCC
* * ** *
72664424 AGTGTAAGACATGTCTAGGACATGCTTTGGCCA-CCTTATGAGAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATAC-TATGAGAGCCAGTGTAAGACCATGTCTG
* *
72664488 GGACATGGCATCGGCATCCAGACGAGGGCT
65 GGACATGGCATCGGCAT-AAGA-GAGTGCT
* *
72664518 TGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
72664583 GACATGGCATCGGCATAGAGATGAGTGCT
66 GACATGGCATCGGCATA-AGA-GAGTGCT
* * * *
72664612 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAC-A-GAGATAGCCAATGTAAGA-CGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAT-ACTATGAG--AGCCAGTGTAAGACCATGTC
* *
72664674 TGGGACAT-GCATCGAC-TAAGAGTTGTGCT
63 TGGGACATGGCATCGGCATAAGAG-AGTGCT
* * *
72664703 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATAAGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-CATACTATGAGAGCCAGTGTAAGACCATGTC
72664767 TGGGACATGGCATC
63 TGGGACATGGCATC
72664781 CGCAATATAA
Statistics
Matches: 226, Mismatches: 24, Indels: 26
0.82 0.09 0.09
Matches are distributed among these distances:
90 1 0.00
91 37 0.16
92 14 0.06
93 24 0.11
94 135 0.60
95 15 0.07
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (92 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATAAGAGAGTGCT
Found at i:72664780 original size:141 final size:141
Alignment explanation
Indices: 72664421--72664780 Score: 371
Period size: 141 Copynumber: 2.6 Consensus size: 141
72664411 TGATTTGTGC
* * *
72664421 GCCAGTGTAAGACATGTCTAGGACATGCTTTGGCCACC-T-TATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACCGTATATGAGAGCCAGTGTAAGACCATG
* * ***
72664484 TCTGGGACATGGCATCGGCATCCAGACGAGGGCTTGTGTAAGACATGTCTGGGACATGCATCAGC
65 TCTGGGACATGGCATCGGCATACAGACGAGAGCCAATGTAAGACATGTCTGGGACATGCATCAGC
* *
72664549 CATACTATGATA
130 AAGACTATGATA
** * * *
72664561 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATAG-AGATGAGTGCTAGTGTAAGA-CAT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACCGTATATGAGAGCCAGTGTAAGACCAT
* * *
72664624 GTCTGGGACAT-GCATCGGCCTTGACAGA-GATAGCCAATGTAAGACGTGTCTGGGACATGCATC
64 GTCTGGGACATGGCATCGG-CAT-ACAGACGAGAGCCAATGTAAGACATGTCTGGGACATGCATC
*
72664687 -GACTAAGAGT-TG-T-
127 AG-C-AAGACTATGATA
* * *
72664700 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATAAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-CGTATATGAGAGCCAGTGTAAGACCATG
*
72664765 TTTGGGACATGGCATC
65 TCTGGGACATGGCATC
72664781 CGCAATATAA
Statistics
Matches: 180, Mismatches: 28, Indels: 23
0.78 0.12 0.10
Matches are distributed among these distances:
137 8 0.04
138 15 0.08
139 27 0.15
140 34 0.19
141 68 0.38
142 28 0.16
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (141 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACCGTATATGAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGGCATACAGACGAGAGCCAATGTAAGACATGTCTGGGACATGCATCAGCA
AGACTATGATA
Found at i:72666627 original size:34 final size:34
Alignment explanation
Indices: 72666583--72666651 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
72666573 GTCAGCTGAC
* * *
72666583 ACTCTTATGTTTAATATTTGATTGTACAGACCAA
1 ACTCTCATGTTTAATATTTAATTGTACAAACCAA
72666617 ACTCTCATGTTTAATATTTAATTGTACAAACCAA
1 ACTCTCATGTTTAATATTTAATTGTACAAACCAA
72666651 A
1 A
72666652 ACACCCCTGG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (34 bp):
ACTCTCATGTTTAATATTTAATTGTACAAACCAA
Found at i:72670873 original size:27 final size:26
Alignment explanation
Indices: 72670839--72670915 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 26
72670829 GGGCAAAACA
*
72670839 GTCATTTTACCCTACAGGTGTATGTCG
1 GTCATTTTACACTACAGG-GTATGTCG
* *
72670866 GTCATTTTGCACTACAAGGGTATTTCG
1 GTCATTTTACACTAC-AGGGTATGTCG
*
72670893 GTAATTTTACACTACAAGGGTAT
1 GTCATTTTACACTAC-AGGGTAT
72670916 TTTGATAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 41 0.93
28 3 0.07
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (26 bp):
GTCATTTTACACTACAGGGTATGTCG
Found at i:72670916 original size:27 final size:27
Alignment explanation
Indices: 72670882--72671168 Score: 326
Period size: 27 Copynumber: 10.7 Consensus size: 27
72670872 TTGCACTACA
* *
72670882 AGGGTATTTCGGTAATTTTAC-ACTACA
1 AGGGTATTTCGGTAATTTTACAAAT-CG
* * *
72670909 AGGGTATTTTGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
72670936 GGGGTGTTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
*
72670963 AGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
72670990 AGGGTATTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
72671017 AGGGTATTTCGGTAACTTTAAAAATCA
1 AGGGTATTTCGGTAATTTTACAAATCG
* * * *
72671044 AGGGTGTTTTGGTAATTTCACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATCG
* * *
72671071 ATGGTATTTCAGTAATTTCAC-AATCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
72671097 AGGGTATTTTGGTAATTTTACAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
72671124 AGGGTACTTCGGTAATTTTACAAACCG
1 AGGGTATTTCGGTAATTTTACAAATCG
* *
72671151 AGGGTATTTTGATAATTT
1 AGGGTATTTCGGTAATTT
72671169 CTCTTCATTA
Statistics
Matches: 219, Mismatches: 39, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
26 21 0.10
27 196 0.89
28 2 0.01
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATCG
Found at i:72671135 original size:107 final size:108
Alignment explanation
Indices: 72670937--72671169 Score: 324
Period size: 107 Copynumber: 2.2 Consensus size: 108
72670927 TACAAATTGG
* * ** *
72670937 GGGTGTTTCGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTCGG
1 GGGTGTTTTGGTAATTTCACAAATTGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCGG
* * *
72671002 TAATTTTACAAATCGAGGGTATTTCGGTAACTTTAAAAATCAA
66 TAATTTTACAAACCGAGGGTACTTCGGTAACTTTAAAAACCAA
* *
72671045 GGGTGTTTTGGTAATTTCACAAATTGATGGTATTTCAGTAATTTCAC-AATCGAGGGTATTTTGG
1 GGGTGTTTTGGTAATTTCACAAATTGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCGG
* * *
72671109 TAATTTTACAAACCGAGGGTACTTCGGTAATTTTACAAACCGA
66 TAATTTTACAAACCGAGGGTACTTCGGTAACTTTAAAAACCAA
* *
72671152 GGGTATTTTGATAATTTC
1 GGGTGTTTTGGTAATTTC
72671170 TCTTCATTAT
Statistics
Matches: 110, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
107 69 0.63
108 41 0.37
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (108 bp):
GGGTGTTTTGGTAATTTCACAAATTGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCGG
TAATTTTACAAACCGAGGGTACTTCGGTAACTTTAAAAACCAA
Found at i:72671522 original size:28 final size:28
Alignment explanation
Indices: 72671485--72671577 Score: 123
Period size: 28 Copynumber: 3.3 Consensus size: 28
72671475 TGGCCCCTTT
* * * *
72671485 AGGCCCAATCTCGTTCACATGGCCCATT
1 AGGCCCAATCACATTCATATGGCCCATC
* **
72671513 AGGCCTAATCACATTCATATGTTCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
72671541 AGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
72671569 AGGCCCAAT
1 AGGCCCAAT
72671578 TACTTCCCAC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:72675082 original size:16 final size:16
Alignment explanation
Indices: 72675061--72675091 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72675051 GACCGAGGAG
*
72675061 TTATTTATGTTAAATC
1 TTATTTATATTAAATC
72675077 TTATTTATATTAAAT
1 TTATTTATATTAAAT
72675092 GAGTTGGTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (16 bp):
TTATTTATATTAAATC
Found at i:72677256 original size:12 final size:12
Alignment explanation
Indices: 72677239--72677263 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72677229 ACCCAAAACC
72677239 CTTAGCCCAAAA
1 CTTAGCCCAAAA
72677251 CTTAGCCCAAAA
1 CTTAGCCCAAAA
72677263 C
1 C
72677264 ACTAACTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (12 bp):
CTTAGCCCAAAA
Found at i:72678673 original size:22 final size:21
Alignment explanation
Indices: 72678643--72678697 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 21
72678633 ACACATTATG
*
72678643 TATATACATTTAAATACTATAT
1 TATATACATTT-AATACCATAT
*
72678665 TATACACATATTAATACCATAT
1 TATATACAT-TTAATACCATAT
72678687 TATATACATTT
1 TATATACATTT
72678698 TTTTTCATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 25 0.86
23 2 0.07
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.44
Consensus pattern (21 bp):
TATATACATTTAATACCATAT
Found at i:72689552 original size:44 final size:42
Alignment explanation
Indices: 72689498--72689742 Score: 165
Period size: 44 Copynumber: 5.6 Consensus size: 42
72689488 GCAACGAGCT
*
72689498 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAAGTTTATAGATC
1 TTAA-CCCCTAAGCAGTAGGGTAAC-AGCTAAAGATTATAGATC
* * * * * * *
72689542 TTATCGCCCTAAGTAGTAGGGAAACAGATCGAAGATGA-AGGGTC
1 TTAAC-CCCTAAGCAGTAGGGTAACAGCT-AAAGATTATA-GATC
* * *
72689586 TTAAACCCCTAAGCAGTAGGGTAACAGAC-CAA-ATTGTAGACC
1 TT-AACCCCTAAGCAGTAGGGTAACAG-CTAAAGATTATAGATC
* * *
72689628 TTAAATCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATC
1 TT-AACCCCTAAGCAGTAGGGTAACA-GCTAAAGA-TTATAGATC
* * * * *
72689673 TTATCACCCTAAGCAGTAGGGAAACAGATCAAAGATGAT-GAGC
1 TTAAC-CCCTAAGCAGTAGGGTAACAGCT-AAAGATTATAGATC
72689716 TTTAACCCCCTAAGCAGTAGGGTAACA
1 -TTAA-CCCCTAAGCAGTAGGGTAACA
72689743 AGCCGAATTT
Statistics
Matches: 155, Mismatches: 32, Indels: 28
0.72 0.15 0.13
Matches are distributed among these distances:
42 30 0.19
43 14 0.09
44 77 0.50
45 34 0.22
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (42 bp):
TTAACCCCTAAGCAGTAGGGTAACAGCTAAAGATTATAGATC
Found at i:72689598 original size:88 final size:88
Alignment explanation
Indices: 72689449--72689611 Score: 224
Period size: 88 Copynumber: 1.9 Consensus size: 88
72689439 GTGAATTCAC
* * *
72689449 AGATCTTGTCTCCCTAAGCAGTAGGGAAACAGATCAAAGGCAACGAGCTTTAACCCCCTAAGCAG
1 AGATCTTATCGCCCTAAGCAGTAGGGAAACAGATCAAAGGCAACGAGCTTTAAACCCCTAAGCAG
72689514 TAGGGTAACAAGCTAAAGTTTAT
66 TAGGGTAACAAGCTAAAGTTTAT
* * *
72689537 AGATCTTATCGCCCTAAGTAGTAGGGAAACAGATCGAAGATG-AA-G-GGTCTTAAACCCCTAAG
1 AGATCTTATCGCCCTAAGCAGTAGGGAAACAGATC-AA-AGGCAACGAGCT-TTAAACCCCTAAG
72689599 CAGTAGGGTAACA
63 CAGTAGGGTAACA
72689612 GACCAAATTG
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
87 2 0.03
88 58 0.88
89 4 0.06
90 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (88 bp):
AGATCTTATCGCCCTAAGCAGTAGGGAAACAGATCAAAGGCAACGAGCTTTAAACCCCTAAGCAG
TAGGGTAACAAGCTAAAGTTTAT
Found at i:72689695 original size:131 final size:132
Alignment explanation
Indices: 72689498--72689804 Score: 383
Period size: 131 Copynumber: 2.3 Consensus size: 132
72689488 GCAACGAGCT
* * * * * *
72689498 TTAACCCCCTAAGCAGTAGGGTAACAAGCTAAAG-TTTATAGATCTTATCGCCCTAAGTAGTAGG
1 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCACCCTAAGCAGTAGG
* *
72689562 GAAACAGATCGAAGATGAAG-GGTCTTAAACCCCTAAGCAGTAGGGTAAC-AGACCAAATTGTA-
66 GAAACAGATCAAAGATGAAGAGCT-TTAAACCCCTAAGCAGTAGGGTAACAAG-CCAAATT-TAC
* *
72689624 GA-CC
128 AAGCA
*
72689628 TTAAATCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCACCCTAAGCAGTAGG
1 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCACCCTAAGCAGTAGG
* * *
72689693 GAAACAGATCAAAGATGATGAGCTTTAACCCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAAG
66 GAAACAGATCAAAGATGAAGAGCTTTAAACCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAG
72689758 CA
131 CA
* * * *
72689760 TTAACCCCCTAAGCAGTAGGGTAATAGGTTGAA-AATTACAGATCT
1 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCT
72689805 CGTCTCCCTG
Statistics
Matches: 153, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
130 32 0.21
131 87 0.57
132 34 0.22
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.22
Consensus pattern (132 bp):
TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGATCTTATCACCCTAAGCAGTAGG
GAAACAGATCAAAGATGAAGAGCTTTAAACCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAAG
CA
Found at i:72689699 original size:87 final size:87
Alignment explanation
Indices: 72689592--72689780 Score: 215
Period size: 87 Copynumber: 2.2 Consensus size: 87
72689582 GGTCTTAAAC
* * *
72689592 CCCTAAGCAGTAGGGTAACAGACCAAA-TTG-T-AGACCTTAAATCCCTAAGCAGTAGGGTAACA
1 CCCTAAGCAGTAGGGAAACAGACCAAAGATGATGAG-CCTTAAACCCCTAAGCAGTAGGGTAACA
* * * *
72689654 GGCTGAAGATTTACAGATC-TTATCA
65 AGCCG-A-ATTTACA-AGCATTAACA
* * *
72689679 CCCTAAGCAGTAGGGAAACAGATCAAAGATGATGAGCTTTAACCCCCTAAGCAGTAGGGTAACAA
1 CCCTAAGCAGTAGGGAAACAGACCAAAGATGATGAGCCTTAAACCCCTAAGCAGTAGGGTAACAA
*
72689744 GCCGAATTTACAAGCATTAACC
66 GCCGAATTTACAAGCATTAACA
72689766 CCCTAAGCAGTAGGG
1 CCCTAAGCAGTAGGG
72689781 TAATAGGTTG
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
86 2 0.02
87 51 0.59
88 3 0.03
89 29 0.33
90 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (87 bp):
CCCTAAGCAGTAGGGAAACAGACCAAAGATGATGAGCCTTAAACCCCTAAGCAGTAGGGTAACAA
GCCGAATTTACAAGCATTAACA
Found at i:72690342 original size:11 final size:11
Alignment explanation
Indices: 72690326--72690364 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
72690316 TAACCCAACT
72690326 ACCCAATTAAA
1 ACCCAATTAAA
72690337 ACCCAATTAAA
1 ACCCAATTAAA
72690348 ACCCAA-TACAA
1 ACCCAATTA-AA
72690359 ACCCAA
1 ACCCAA
72690365 AACCCTTAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 2 0.07
11 25 0.93
ACGTcount: A:0.54, C:0.33, G:0.00, T:0.13
Consensus pattern (11 bp):
ACCCAATTAAA
Found at i:72690386 original size:12 final size:12
Alignment explanation
Indices: 72690369--72690393 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
72690359 ACCCAAAACC
72690369 CTTAGCCCAAAA
1 CTTAGCCCAAAA
72690381 CTTAGCCCAAAA
1 CTTAGCCCAAAA
72690393 C
1 C
72690394 ACTAACCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.36, G:0.08, T:0.16
Consensus pattern (12 bp):
CTTAGCCCAAAA
Found at i:72690794 original size:23 final size:22
Alignment explanation
Indices: 72690775--72690822 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 22
72690765 GAATTTATTT
72690775 ACAGATTATCCCCATTTTTAATAA
1 ACAGATTA-CCCCATTTTT-ATAA
*
72690799 ACATATTACCCCATTTTTAATAA
1 ACAGATTACCCCATTTTT-ATAA
72690822 A
1 A
72690823 AAAACATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.40, C:0.21, G:0.02, T:0.38
Consensus pattern (22 bp):
ACAGATTACCCCATTTTTATAA
Found at i:72690843 original size:4 final size:4
Alignment explanation
Indices: 72690836--72690865 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
72690826 ACATATATAT
72690836 TAAA TAAA T-AA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
72690866 GAGAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
TAAA
Found at i:72691805 original size:22 final size:21
Alignment explanation
Indices: 72691775--72691829 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 21
72691765 ACACATTATG
*
72691775 TATATACATTTAAATACTATAT
1 TATATACATTT-AATACCATAT
*
72691797 TATACACATATTAATACCATAT
1 TATATACAT-TTAATACCATAT
72691819 TATATACATTT
1 TATATACATTT
72691830 TTTTTCATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 25 0.86
23 2 0.07
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.44
Consensus pattern (21 bp):
TATATACATTTAATACCATAT
Found at i:72693788 original size:24 final size:24
Alignment explanation
Indices: 72693756--72693803 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
72693746 ATTTCGTACA
72693756 AATGTGACAAATTAAAATAAGACT
1 AATGTGACAAATTAAAATAAGACT
72693780 AATGTGACAAATTAAAATAAGACT
1 AATGTGACAAATTAAAATAAGACT
72693804 TAACTCCTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.08, G:0.12, T:0.25
Consensus pattern (24 bp):
AATGTGACAAATTAAAATAAGACT
Found at i:72703272 original size:86 final size:86
Alignment explanation
Indices: 72703105--72703362 Score: 464
Period size: 86 Copynumber: 3.0 Consensus size: 86
72703095 TTCTCAGCGT
* *
72703105 TTTCTACAATTAAAATAAAGGTAATTTTCAGAAACTTTG-ATTTTTCTTTTAAAACATCTATTTC
1 TTTCTACAATTAAAACAAAGGTAATTTTCAGAAACTTTGCTTTTTTCTTTTAAAACATCTATTTC
72703169 CTTCTTTTATCAATAGTATGG
66 CTTCTTTTATCAATAGTATGG
*
72703190 TTTCTACAATTAAAACAAAGGTAATTTTCAAAAACTTTGCTTTTTTCTTTTAAAACATCTATTTC
1 TTTCTACAATTAAAACAAAGGTAATTTTCAGAAACTTTGCTTTTTTCTTTTAAAACATCTATTTC
72703255 CTTCTTTTATCAATAGTATGG
66 CTTCTTTTATCAATAGTATGG
*
72703276 TTTCTACAATTAAAACAAAGGTAATTTTCAGAAGCTTTGCTTTTTTCTTTTAAAACATCTATTTC
1 TTTCTACAATTAAAACAAAGGTAATTTTCAGAAACTTTGCTTTTTTCTTTTAAAACATCTATTTC
*
72703341 CTTCTTTTATCGATAGTATGG
66 CTTCTTTTATCAATAGTATGG
72703362 T
1 T
72703363 GAGGGTAAGA
Statistics
Matches: 166, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
85 37 0.22
86 129 0.78
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (86 bp):
TTTCTACAATTAAAACAAAGGTAATTTTCAGAAACTTTGCTTTTTTCTTTTAAAACATCTATTTC
CTTCTTTTATCAATAGTATGG
Found at i:72705996 original size:69 final size:69
Alignment explanation
Indices: 72705915--72706278 Score: 458
Period size: 69 Copynumber: 5.3 Consensus size: 69
72705905 ATTCGTCTAC
* * * *
72705915 GAACCTTTATATGATAGCTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTTACGGCTCTTTGC
1 GAACCTTAATATGACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTTGCGGCTCTTCGC
*
72705980 TTGT
66 CTGT
* * * * * *
72705984 GAACCTTAATATGATAGCTAGGAGCTTTGTTCTTGCTAACTATTTTGAAGCTTGCGGCTCTTCGC
1 GAACCTTAATATGACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTTGCGGCTCTTCGC
*
72706049 CTGC
66 CTGT
* * * * * * *
72706053 AAATCTTAATATGACAGCTGGGAACTTTTCTCTCACTAACTGTTTTGGAGGTTGCAGCTCTTCGC
1 GAACCTTAATATGACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTTGCGGCTCTTCGC
72706118 CTGT
66 CTGT
* * * * *
72706122 GAACCTTAATATGACAACTAGGAGCTTTGCTCTCACTAACTGTTTTGGAGGTTGTGGCTCTTCGC
1 GAACCTTAATATGACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTTGCGGCTCTTCGC
*
72706187 TTGT
66 CTGT
* * * *
72706191 GAACCTTAATATGACAGCTGGGAGCTTTGCTCTAGCTAACTATTTTAGAGGTTGCAGCTCTTTGC
1 GAACCTTAATATGACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTTGCGGCTCTTCGC
*
72706256 CTGC
66 CTGT
72706260 GAACCTTAATATGACAGCT
1 GAACCTTAATATGACAGCT
72706279 TGATAACTCT
Statistics
Matches: 251, Mismatches: 44, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
69 251 1.00
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (69 bp):
GAACCTTAATATGACAGCTGGGAGCTTTGCTCTCGCTAACTATTTTGGAGGTTGCGGCTCTTCGC
CTGT
Found at i:72708001 original size:69 final size:69
Alignment explanation
Indices: 72707815--72708056 Score: 193
Period size: 69 Copynumber: 3.5 Consensus size: 69
72707805 CACACACGAC
* * * * * * * *
72707815 ACAACTGGGAGCTTTACTCTTGCTAACTATTTTGGAGGTTGTGGCTTTTTGCCTGCGAACCTTAA
1 ACAATTGGGAGCTTTGCTCTTGCTAACTGTTTTAGAGGTTGTGGCTCTTCGCCTGAGAAACTTAA
72707880 TATG
66 TATG
* * * * * * ** * *
72707884 GCAATTGGGAGCTTTGATCTCGGTAACTGTTTTAGAGGATATAACTCTTCGCTTGAGAAATTTAA
1 ACAATTGGGAGCTTTGCTCTTGCTAACTGTTTTAGAGGTTGTGGCTCTTCGCCTGAGAAACTTAA
72707949 TATG
66 TATG
* * * * **
72707953 ACAGTTGGGAGCTTTGCTCTTGCTAATTGTTTTAGAGGTTGCGGCTCTTCACCTTCG-AACATTA
1 ACAATTGGGAGCTTTGCTCTTGCTAACTGTTTTAGAGGTTGTGGCTCTTCGCCTGAGAAAC-TTA
72708017 ATATG
65 ATATG
* * *
72708022 ACAACTGAGAG-TCTTGCT-TTCGCTAATTGTTTTAG
1 ACAATTGGGAGCT-TTGCTCTT-GCTAACTGTTTTAG
72708057 GCCACATGAA
Statistics
Matches: 133, Mismatches: 37, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
68 5 0.04
69 128 0.96
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.38
Consensus pattern (69 bp):
ACAATTGGGAGCTTTGCTCTTGCTAACTGTTTTAGAGGTTGTGGCTCTTCGCCTGAGAAACTTAA
TATG
Found at i:72713721 original size:55 final size:56
Alignment explanation
Indices: 72713656--72713770 Score: 128
Period size: 55 Copynumber: 2.1 Consensus size: 56
72713646 AGCATGGCTG
* * *
72713656 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * * *
72713712 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAATAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
72713767 CCAG
1 CCAG
72713771 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
54 1 0.02
55 28 0.56
56 21 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:72713767 original size:28 final size:27
Alignment explanation
Indices: 72713681--72713770 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
72713671 GTGACAGAGT
*
72713681 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
72713710 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
72713737 CACCAGAATAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
72713765 CACCAG
1 CACCAG
72713771 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:72713923 original size:28 final size:28
Alignment explanation
Indices: 72713876--72713940 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
72713866 AAATTAACCC
*
72713876 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
72713904 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
72713932 TAGGGGTAT
1 TAGGGGTAT
72713941 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:72715027 original size:12 final size:13
Alignment explanation
Indices: 72715008--72715040 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
72714998 GGGTTCGACT
72715008 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
72715021 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
72715033 ATGGAGAA
1 ATGGAGAA
72715041 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:72718335 original size:42 final size:42
Alignment explanation
Indices: 72718287--72718440 Score: 175
Period size: 42 Copynumber: 3.6 Consensus size: 42
72718277 TAAGATTACA
* *
72718287 TGTAAGACCATATCTCGGATATGACATCGATATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGACATCGATATGAGACTTAG
* * *
72718329 TGTAAGACCATATCTGGGATATGGCATCGATATAAGACTTTG
1 TGTAAGACCATATCTGGGATATGACATCGATATGAGACTTAG
* * * * * *
72718371 TGTAAGACCAAAGCTGGGCTATTGGCATCGATACGAGA-TTAAA
1 TGTAAGACCATATCTGGGATA-TGACATCGATATGAGACTT-AG
*
72718414 TGTAGGACCATATCTGGGATATGACAT
1 TGTAAGACCATATCTGGGATATGACAT
72718441 TGGTACGGTA
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 63 0.67
43 31 0.33
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGACATCGATATGAGACTTAG
Found at i:72724801 original size:42 final size:42
Alignment explanation
Indices: 72724753--72724908 Score: 199
Period size: 42 Copynumber: 3.7 Consensus size: 42
72724743 ACTAAGATTA
72724753 CGTGTAAGACCATATCTAGGATATGGCATC-AGTATGAGACTT
1 CGTGTAAGACCATATCTAGGATATGGCATCGA-TATGAGACTT
*
72724795 CGTGTAAGACCATATCTAGGATATGGCATTGATATGAGACTT
1 CGTGTAAGACCATATCTAGGATATGGCATCGATATGAGACTT
* * * * *
72724837 TGTGTAAGACCATAGCTTGGCTATGGGCATCGATACGAGA-TT
1 CGTGTAAGACCATATCTAGGATAT-GGCATCGATATGAGACTT
* *
72724879 ACATGTAAGACCATATCTGGGATATGGCAT
1 -CGTGTAAGACCATATCTAGGATATGGCAT
72724909 TGGTACGGTA
Statistics
Matches: 99, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
42 66 0.67
43 33 0.33
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATATCTAGGATATGGCATCGATATGAGACTT
Found at i:72724893 original size:85 final size:84
Alignment explanation
Indices: 72724754--72724910 Score: 219
Period size: 85 Copynumber: 1.9 Consensus size: 84
72724744 CTAAGATTAC
* * *
72724754 GTGTAAGACCATATCTAGGATATGGCATCAGTATGAGACTTCGTGTAAGACCATATCTAGGATAT
1 GTGTAAGACCATAGCTAGGATATGGCATCAGTACGAGACTTCATGTAAGACCATATCTAGGATAT
72724819 GGCATTGATATGAGACTTT
66 GGCATTGATATGAGACTTT
* * *
72724838 GTGTAAGACCATAGCTTGGCTATGGGCATC-GATACGAGA-TTACATGTAAGACCATATCTGGGA
1 GTGTAAGACCATAGCTAGGATAT-GGCATCAG-TACGAGACTT-CATGTAAGACCATATCTAGGA
72724901 TATGGCATTG
63 TATGGCATTG
72724911 GTACGGTACT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
84 23 0.36
85 41 0.64
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (84 bp):
GTGTAAGACCATAGCTAGGATATGGCATCAGTACGAGACTTCATGTAAGACCATATCTAGGATAT
GGCATTGATATGAGACTTT
Found at i:72736074 original size:25 final size:25
Alignment explanation
Indices: 72736046--72736097 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
72736036 AATTCGGTTT
*
72736046 ACCCATCTGGGCTAAATCCATTCAC
1 ACCCATCCGGGCTAAATCCATTCAC
*
72736071 ACCCGTCCGGGCTAAATCCATTCAC
1 ACCCATCCGGGCTAAATCCATTCAC
72736096 AC
1 AC
72736098 ATATTCTTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.27, C:0.38, G:0.13, T:0.21
Consensus pattern (25 bp):
ACCCATCCGGGCTAAATCCATTCAC
Found at i:72741548 original size:28 final size:28
Alignment explanation
Indices: 72741515--72741587 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
72741505 GTATAATAAG
*
72741515 CCCGCACACTTAGTGCTATATAA-TCAA
1 CCCGCACACTTAGTGCTATACAATTCAA
*
72741542 CCTCGCACACTTAGTGCTATACAATTTGAA
1 CC-CGCACACTTAGTGCTATACAA-TTCAA
72741572 CCCGCACACTTAGTGC
1 CCCGCACACTTAGTGC
72741588 CAATCTCATG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
27 2 0.05
28 20 0.49
29 14 0.34
30 5 0.12
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.26
Consensus pattern (28 bp):
CCCGCACACTTAGTGCTATACAATTCAA
Found at i:72749528 original size:28 final size:29
Alignment explanation
Indices: 72749496--72749594 Score: 107
Period size: 28 Copynumber: 3.5 Consensus size: 29
72749486 ATAATAAGCC
*
72749496 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
*
72749524 CGCACACTTAGTGC-TATATAATC-AACCT
1 CGCACACTTAGTGCTTACATAATCGAA-CT
* * *
72749552 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
72749581 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72749595 CAATCTCATG
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
27 4 0.07
28 35 0.57
29 17 0.28
30 5 0.08
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:72751674 original size:6 final size:6
Alignment explanation
Indices: 72751663--72751696 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
72751653 AGGTTTCTAA
*
72751663 AAATGG AAATGG AAATGG AAATGG AAATGA AAAT
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAAT
72751697 AATTCATTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.56, C:0.00, G:0.26, T:0.18
Consensus pattern (6 bp):
AAATGG
Found at i:72751897 original size:26 final size:26
Alignment explanation
Indices: 72751843--72751917 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
72751833 ACATATTTTC
*
72751843 TCAAAATTTTACTA-GGGAAAAATCG
1 TCAAAATTTTACTAGGGGTAAAATCG
* *
72751868 TCAAAAGTTTACCAGGGGTAAAATCG
1 TCAAAATTTTACTAGGGGTAAAATCG
*
72751894 TCAAAATTTTGCTAGGGGTAAAAT
1 TCAAAATTTTACTAGGGGTAAAAT
72751918 ATGAATGGGA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
25 12 0.28
26 31 0.72
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (26 bp):
TCAAAATTTTACTAGGGGTAAAATCG
Found at i:72760037 original size:47 final size:47
Alignment explanation
Indices: 72759978--72760099 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
72759968 GCATTGGCAA
*
72759978 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACAAGGCATTTGG
72760025 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACAAGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACAAGGCATTTGG
* *
72760072 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
72760100 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACAAGGCATTTGG
Found at i:72760779 original size:19 final size:19
Alignment explanation
Indices: 72760755--72760792 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
72760745 AGGGACTTAG
72760755 CCATTTTGTGTGTATGTCC
1 CCATTTTGTGTGTATGTCC
72760774 CCATTTTGTGTGTATGTCC
1 CCATTTTGTGTGTATGTCC
72760793 TATGATATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.21, G:0.21, T:0.47
Consensus pattern (19 bp):
CCATTTTGTGTGTATGTCC
Found at i:72763008 original size:29 final size:30
Alignment explanation
Indices: 72762971--72763030 Score: 113
Period size: 29 Copynumber: 2.0 Consensus size: 30
72762961 AAATTCTCTT
72762971 TTAACCGGAGTTTTGATTTTATCT-TTCTC
1 TTAACCGGAGTTTTGATTTTATCTATTCTC
72763000 TTAACCGGAGTTTTGATTTTATCTATTCTC
1 TTAACCGGAGTTTTGATTTTATCTATTCTC
72763030 T
1 T
72763031 CATGCTCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 24 0.80
30 6 0.20
ACGTcount: A:0.18, C:0.17, G:0.13, T:0.52
Consensus pattern (30 bp):
TTAACCGGAGTTTTGATTTTATCTATTCTC
Done.