Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 223 of 325
Found at i:72763858 original size:17 final size:18
Alignment explanation
Indices: 72763836--72763869 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72763826 ACCTAATGTC
72763836 TTTTAAA-ATATCCTTAG
1 TTTTAAAGATATCCTTAG
*
72763853 TTTTAAAGATATTCTTA
1 TTTTAAAGATATCCTTA
72763870 ATTACTCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (18 bp):
TTTTAAAGATATCCTTAG
Found at i:72766543 original size:22 final size:22
Alignment explanation
Indices: 72766492--72766544 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
72766482 TTATTAACAT
*
72766492 ATTTAATTTTAATTAATTTTAG
1 ATTTAATTTTAATAAATTTTAG
* * *
72766514 AATAAATTTTCATAAAATTTT-G
1 ATTTAATTTTAAT-AAATTTTAG
72766536 ATTTAATTT
1 ATTTAATTT
72766545 CGACAAATTT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (22 bp):
ATTTAATTTTAATAAATTTTAG
Found at i:72789819 original size:15 final size:17
Alignment explanation
Indices: 72789799--72789831 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
72789789 GGAGTTTTGG
72789799 GTTTTC-TTATG-TTTT
1 GTTTTCTTTATGCTTTT
72789814 GTTTTCTTTATGCTTTT
1 GTTTTCTTTATGCTTTT
72789831 G
1 G
72789832 AGATGTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 5 0.31
17 5 0.31
ACGTcount: A:0.06, C:0.09, G:0.15, T:0.70
Consensus pattern (17 bp):
GTTTTCTTTATGCTTTT
Found at i:72797593 original size:13 final size:13
Alignment explanation
Indices: 72797575--72797599 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72797565 GTATGTGCCG
72797575 CGTGGTTCACTGC
1 CGTGGTTCACTGC
72797588 CGTGGTTCACTG
1 CGTGGTTCACTG
72797600 ATGTTTCCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.28, G:0.32, T:0.32
Consensus pattern (13 bp):
CGTGGTTCACTGC
Found at i:72799270 original size:14 final size:15
Alignment explanation
Indices: 72799251--72799280 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
72799241 ATATTTAACT
72799251 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
72799265 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
72799280 T
1 T
72799281 TTTGATATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:72801752 original size:21 final size:21
Alignment explanation
Indices: 72801726--72801770 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
72801716 TACTCTATCA
*
72801726 GTGTTCTTCGTATTTGATGTT
1 GTGTTCTTCGTATTTGATGCT
72801747 GTGTTCTTCGTATTTGATGCT
1 GTGTTCTTCGTATTTGATGCT
72801768 GTG
1 GTG
72801771 AATAAATTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.09, C:0.11, G:0.27, T:0.53
Consensus pattern (21 bp):
GTGTTCTTCGTATTTGATGCT
Found at i:72803527 original size:39 final size:39
Alignment explanation
Indices: 72803484--72803563 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
72803474 TTCAAAGCAA
* *
72803484 GTCAACCATCAACTTTGACTCTATATCTCAAAAATGTTT
1 GTCAACCATCAACTTTGACTCTAAATCTCAAAAATCTTT
*
72803523 GTCAACCATCAACTTTGACTCTAAATCTTAAAAATCTTT
1 GTCAACCATCAACTTTGACTCTAAATCTCAAAAATCTTT
72803562 GT
1 GT
72803564 TTCCCCTTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (39 bp):
GTCAACCATCAACTTTGACTCTAAATCTCAAAAATCTTT
Found at i:72815661 original size:17 final size:16
Alignment explanation
Indices: 72815631--72815668 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
72815621 AAAGTAATTG
*
72815631 ATTTAAATTTAGTTAA
1 ATTTTAATTTAGTTAA
72815647 ATTTTAATTTCAGTTAA
1 ATTTTAATTT-AGTTAA
72815664 ATTTT
1 ATTTT
72815669 GTTAAAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (16 bp):
ATTTTAATTTAGTTAA
Found at i:72830892 original size:13 final size:13
Alignment explanation
Indices: 72830874--72830898 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72830864 TAATTTATAT
72830874 GTGTGAAAATTTC
1 GTGTGAAAATTTC
72830887 GTGTGAAAATTT
1 GTGTGAAAATTT
72830899 TATCGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:72832070 original size:44 final size:42
Alignment explanation
Indices: 72832003--72832096 Score: 116
Period size: 44 Copynumber: 2.2 Consensus size: 42
72831993 CATAAGATTC
*
72832003 CGATATGTGATTCGTTTAAGACCACGTCTGGGACGTTGACAT
1 CGATATGTGATTCGTTTAAGACCACGTCTGGGACATTGACAT
* * * *
72832045 CGATTTGTGATTTACGTTTACGACCATGTCTGGGACATTGGCAT
1 CGATATGTGA-TT-CGTTTAAGACCACGTCTGGGACATTGACAT
72832089 CGTATATG
1 CG-ATATG
72832097 AGTTCGTGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
42 9 0.21
43 2 0.05
44 28 0.65
45 4 0.09
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (42 bp):
CGATATGTGATTCGTTTAAGACCACGTCTGGGACATTGACAT
Found at i:72834154 original size:17 final size:18
Alignment explanation
Indices: 72834110--72834155 Score: 51
Period size: 20 Copynumber: 2.5 Consensus size: 18
72834100 AATAAATAAA
72834110 TCTAATATTAAAGTGATTG
1 TCTAATATTAAAGT-ATTG
72834129 TCTTAATATTAAA-T-TTAG
1 TC-TAATATTAAAGTATT-G
72834147 TCTAATATT
1 TCTAATATT
72834156 TATCTTGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 9 0.36
18 3 0.12
19 3 0.12
20 10 0.40
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.48
Consensus pattern (18 bp):
TCTAATATTAAAGTATTG
Found at i:72838910 original size:3 final size:3
Alignment explanation
Indices: 72838902--72838931 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
72838892 TCCTATCTTT
*
72838902 TTA TTA TTA TAA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
72838932 CCCGTATGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:72841556 original size:27 final size:26
Alignment explanation
Indices: 72841508--72841567 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
72841498 GCGAGGCTGC
*
72841508 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
72841535 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
72841561 AAGATAT
1 CAGATAT
72841568 AAATATATGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72841656 original size:27 final size:26
Alignment explanation
Indices: 72841608--72841659 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72841598 GCGAGGCTGC
*
72841608 CAAATATTGTGACGAAGTCACCAGAA
1 CAAATATTGTGACGAAGCCACCAGAA
* *
72841634 CAAATATATGTGGCGAGGCCACCAGA
1 CAAATAT-TGTGACGAAGCCACCAGA
72841660 TTTCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.17
Consensus pattern (26 bp):
CAAATATTGTGACGAAGCCACCAGAA
Found at i:72842346 original size:27 final size:27
Alignment explanation
Indices: 72842316--72842423 Score: 135
Period size: 27 Copynumber: 4.0 Consensus size: 27
72842306 ATCGGTAGTC
* * *
72842316 CTACCTTATAGGGGTATTTCAATAATT
1 CTACCCTACAGGGGTATTTCAGTAATT
* *
72842343 CTACCCTACAGGGATATTTCGGTAATT
1 CTACCCTACAGGGGTATTTCAGTAATT
* * *
72842370 TTACCCTATAAGGGTATTTCAGTAATT
1 CTACCCTACAGGGGTATTTCAGTAATT
*
72842397 CTACCCTACAGGGGTAATTCAGTAATT
1 CTACCCTACAGGGGTATTTCAGTAATT
72842424 TTGTCAATCG
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.36
Consensus pattern (27 bp):
CTACCCTACAGGGGTATTTCAGTAATT
Found at i:72842423 original size:54 final size:54
Alignment explanation
Indices: 72842290--72842425 Score: 173
Period size: 54 Copynumber: 2.5 Consensus size: 54
72842280 ATAGTCATTT
* * * ** * *
72842290 TACCCTCCAGGGGTAAATCGGTAGTCCTACCTTATAGGGGTATTTCAATAATTC
1 TACCCTACAGGGGTAATTCGGTAATTTTACCCTATAAGGGTATTTCAATAATTC
* * *
72842344 TACCCTACAGGGATATTTCGGTAATTTTACCCTATAAGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTAATTCGGTAATTTTACCCTATAAGGGTATTTCAATAATTC
*
72842398 TACCCTACAGGGGTAATTCAGTAATTTT
1 TACCCTACAGGGGTAATTCGGTAATTTT
72842426 GTCAATCGAG
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
TACCCTACAGGGGTAATTCGGTAATTTTACCCTATAAGGGTATTTCAATAATTC
Found at i:72842538 original size:27 final size:27
Alignment explanation
Indices: 72842408--72842592 Score: 128
Period size: 27 Copynumber: 6.9 Consensus size: 27
72842398 TACCCTACAG
* *
72842408 GGGTAATTCAGTAATTTTGTC-AATCGA
1 GGGTATTTCAGTAATTTT-ACAAATCGA
*** * * *
72842435 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
72842462 GGGTACTTT-GGCAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
* *
72842489 GAGTATTTTAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
72842516 GGGTATTTCAGTAATTTTACAAA-CTA
1 GGGTATTTCAGTAATTTTACAAATCGA
** * *
72842542 GGGATATTTTC-GTAATTTTGTAAACCAA
1 GGG-TA-TTTCAGTAATTTTACAAATCGA
72842570 GGGTATTTTCA-TAATTTTACAAA
1 GGGTA-TTTCAGTAATTTTACAAA
72842593 CCAATGGTAT
Statistics
Matches: 126, Mismatches: 25, Indels: 14
0.76 0.15 0.08
Matches are distributed among these distances:
26 8 0.06
27 109 0.87
28 9 0.07
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.37
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:72842593 original size:27 final size:28
Alignment explanation
Indices: 72842491--72842605 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 28
72842481 CAAGTCGAGA
* *
72842491 GTATTTT-AGTAATTTTACAAATCGAGG
1 GTATTTTCAGTAATTTTACAAACCAAGG
*
72842518 GTA-TTTCAGTAATTTTACAAA-CTAGG
1 GTATTTTCAGTAATTTTACAAACCAAGG
**
72842544 GATATTTTC-GTAATTTTGTAAACCAAGG
1 G-TATTTTCAGTAATTTTACAAACCAAGG
*
72842572 GTATTTTCA-TAATTTTACAAACCAATG
1 GTATTTTCAGTAATTTTACAAACCAAGG
72842599 GTATTTT
1 GTATTTT
72842606 GGTGATTTGG
Statistics
Matches: 76, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
26 8 0.11
27 59 0.78
28 9 0.12
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (28 bp):
GTATTTTCAGTAATTTTACAAACCAAGG
Found at i:72842604 original size:54 final size:53
Alignment explanation
Indices: 72842491--72842620 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 53
72842481 CAAGTCGAGA
** * * *
72842491 GTATTTTAGTAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAAACTAGG
1 GTATTTTAGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTACAAACAAGG
* *
72842544 GATATTTTCGTAATTTTGTAAACCAAGGGTATTTTCA-TAATTTTACAAACCAATG
1 G-TATTTTAGTAATTTTGTAAACCAAGGGTA-TTTCAGTAATTTTACAAA-CAAGG
* * *
72842599 GTATTTTGGTGATTTGGTAAAC
1 GTATTTTAGTAATTTTGTAAAC
72842621 TAAAGTAAAC
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
53 1 0.02
54 54 0.84
55 9 0.14
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (53 bp):
GTATTTTAGTAATTTTGTAAACCAAGGGTATTTCAGTAATTTTACAAACAAGG
Found at i:72849452 original size:71 final size:67
Alignment explanation
Indices: 72849375--72849516 Score: 194
Period size: 67 Copynumber: 2.1 Consensus size: 67
72849365 TCACCAGATA
* * *
72849375 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
72849440 GGCTGC
62 GGCTGC
* * *
72849446 CAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGATGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
72849511 GC
66 GC
72849513 CAGA
1 CAGA
72849517 ACGCTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
67 40 0.62
71 25 0.38
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.19
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAGGCT
GC
Found at i:72849494 original size:27 final size:26
Alignment explanation
Indices: 72849446--72849497 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
72849436 GCGAGGCTGC
*
72849446 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
72849472 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
72849498 TTGCAGCGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:72850187 original size:27 final size:27
Alignment explanation
Indices: 72850157--72850255 Score: 117
Period size: 27 Copynumber: 3.7 Consensus size: 27
72850147 TCGGTAGTCT
*
72850157 TACCCTACAGGGGTATTTCAATAATTC
1 TACCCTACAGGGGTATTTCGATAATTC
*
72850184 TACCCTACAGGGGTAATTCGATAATTC
1 TACCCTACAGGGGTATTTCGATAATTC
* * * * * *
72850211 TATCATATAGGGGTATTTTGGTAATTT
1 TACCCTACAGGGGTATTTCGATAATTC
*
72850238 TACCCTACAAGGGTATTT
1 TACCCTACAGGGGTATTT
72850256 TAGTAATTTT
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGATAATTC
Found at i:72850406 original size:27 final size:26
Alignment explanation
Indices: 72850221--72850453 Score: 178
Period size: 27 Copynumber: 8.7 Consensus size: 26
72850211 TATCATATAG
**
72850221 GGGTATTTTGGTAATTTTACCCTACAA
1 GGGTATTTTGGTAATTTTA-CAAACAA
* * ***
72850248 GGGTATTTTAGTAATTTTTTCAATTGA
1 GGGTATTTTGGTAA-TTTTACAAACAA
*** * * *
72850275 GGGTAAAATGGTAATTCTATAAATCGA
1 GGGTATTTTGGTAATTTTACAAA-CAA
** *
72850302 GGGTCCTTTGGTAATTTTACAAGTCAA
1 GGGTATTTTGGTAATTTTACAA-ACAA
* **
72850329 GAGTATTTCAGTAATTTTACAAATCAA
1 GGGTATTTTGGTAATTTTACAAA-CAA
**
72850356 GGGTATTTCAGTAATTTTACAAACAA
1 GGGTATTTTGGTAATTTTACAAACAA
**
72850382 GGAGTATTTTGGTAATTTTGTAAACTAA
1 GG-GTATTTTGGTAATTTTACAAAC-AA
72850410 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CAA
*
72850437 GGGTATTTTGGTGATTT
1 GGGTATTTTGGTAATTT
72850454 GGTAAACTAA
Statistics
Matches: 161, Mismatches: 38, Indels: 14
0.76 0.18 0.07
Matches are distributed among these distances:
26 10 0.06
27 142 0.88
28 9 0.06
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAA
Found at i:72852272 original size:43 final size:42
Alignment explanation
Indices: 72852203--72852328 Score: 153
Period size: 44 Copynumber: 2.9 Consensus size: 42
72852193 CTCGTACAAC
*
72852203 GCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGAT
1 GCCAATGTCCCAGACGTGGTCTTACATG-AATCACATATCGAT
* * * * * *
72852246 GCCACTGTCCCAAACATGGTCATACATGCAAATCAAAAATCGAT
1 GCCAATGTCCCAGACGTGGTCTTACATG--AATCACATATCGAT
*
72852290 GCCAATGTCCCAGACGTGGTCTTCCATGAATCACATATC
1 GCCAATGTCCCAGACGTGGTCTTACATGAATCACATATC
72852329 AGAATTCTAT
Statistics
Matches: 67, Mismatches: 15, Indels: 3
0.79 0.18 0.04
Matches are distributed among these distances:
42 9 0.13
43 23 0.34
44 35 0.52
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (42 bp):
GCCAATGTCCCAGACGTGGTCTTACATGAATCACATATCGAT
Found at i:72860515 original size:40 final size:40
Alignment explanation
Indices: 72860470--72860701 Score: 299
Period size: 40 Copynumber: 5.8 Consensus size: 40
72860460 ATAACCACAA
* * *
72860470 GCACAATTGCCTTCGGGTCTTAACCCGGGA-ATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCC-GGATATATCAACTC
72860510 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
72860550 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
72860590 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * * *
72860630 GCATAAATGCCTTCGGGACTTAGCCCAGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * *
72860670 GCATAGATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
72860702 CATTCAAATG
Statistics
Matches: 179, Mismatches: 11, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 4 0.02
40 171 0.96
41 4 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:72871531 original size:20 final size:20
Alignment explanation
Indices: 72871506--72871547 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
72871496 TCCGAAATTT
* *
72871506 GTATGTTCTCCGTAGCTAGG
1 GTATGTTCCCCATAGCTAGG
72871526 GTATGTTCCCCATAGCTAGG
1 GTATGTTCCCCATAGCTAGG
72871546 GT
1 GT
72871548 TTTCAACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (20 bp):
GTATGTTCCCCATAGCTAGG
Found at i:72888266 original size:27 final size:27
Alignment explanation
Indices: 72888229--72888395 Score: 212
Period size: 27 Copynumber: 6.2 Consensus size: 27
72888219 AGCATGGCTG
* ** *
72888229 CCAGAACAGATA-ATGTGATAGAGTCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
72888255 CCAGATACAGATA-ATCGTGGCAGGGCCA
1 CCAGAT-CAGATATAT-GTGGCAGAGCCA
*
72888283 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
72888310 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
*
72888337 CCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
* *
72888364 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGATCAGATATATGTGGCAGAGCCA
72888391 CCAGA
1 CCAGA
72888396 ACGCTTCCTC
Statistics
Matches: 128, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
26 5 0.04
27 108 0.84
28 15 0.12
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CCAGATCAGATATATGTGGCAGAGCCA
Found at i:72888288 original size:54 final size:54
Alignment explanation
Indices: 72888229--72888397 Score: 241
Period size: 54 Copynumber: 3.1 Consensus size: 54
72888219 AGCATGGCTG
** * * * *
72888229 CCAGAACAGATA-ATGTGATAGAGTCACCAGATACAGATAATCGTGGCAGGGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
72888283 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
* * *
72888337 CCAGATCAGATATTTGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
72888391 CCAGAAC
1 CCAGAAC
72888398 GCTTCCTCCA
Statistics
Matches: 104, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
54 87 0.84
55 17 0.16
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGCCA
Found at i:72890052 original size:26 final size:26
Alignment explanation
Indices: 72890014--72890123 Score: 193
Period size: 26 Copynumber: 4.2 Consensus size: 26
72890004 CATGAAATTC
*
72890014 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
72890040 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
72890066 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
72890092 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
72890118 TTATCA
1 TTATCA
72890124 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:72892934 original size:22 final size:22
Alignment explanation
Indices: 72892906--72892959 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
72892896 ACACGTCTGT
*
72892906 GTGCCAAGCCGTGTGCTAGGCC
1 GTGCCAAACCGTGTGCTAGGCC
72892928 GTGCCAAACCGTGTGCTAGGCC
1 GTGCCAAACCGTGTGCTAGGCC
*
72892950 ATGCCAAACC
1 GTGCCAAACC
72892960 TGTAGGGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.17
Consensus pattern (22 bp):
GTGCCAAACCGTGTGCTAGGCC
Found at i:72894329 original size:31 final size:31
Alignment explanation
Indices: 72894277--72894336 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
72894267 TGAGGGATGG
* * *
72894277 AAATAGGGTTAGTTTGATATTTTACTTAATT
1 AAATAGAGTTAATTTGATATTTTAATTAATT
72894308 AAATAGAGTTAATTT-ATTATTTTAATTAA
1 AAATAGAGTTAATTTGA-TATTTTAATTAA
72894337 ATAAGGATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (31 bp):
AAATAGAGTTAATTTGATATTTTAATTAATT
Found at i:72899795 original size:54 final size:54
Alignment explanation
Indices: 72899728--72899838 Score: 123
Period size: 54 Copynumber: 2.1 Consensus size: 54
72899718 GAAGAAATGG
* * * * * ** *
72899728 AAGATTTGGAGAGAACCATGGGAAATGAATAGTTATTAACCTTGGAAGTGAGGA
1 AAGATCTGAAGAGAACAATGAGAAATGAATAGTTATCAACCTTCAAAGCGAGGA
* **
72899782 AAGATCTGAAGAGAGCAATGAGAGGTGAATAGTTATCAACCTTCAAAGCGAGGA
1 AAGATCTGAAGAGAACAATGAGAAATGAATAGTTATCAACCTTCAAAGCGAGGA
72899836 AAG
1 AAG
72899839 GCTCTTGCTA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 46 1.00
ACGTcount: A:0.41, C:0.10, G:0.29, T:0.21
Consensus pattern (54 bp):
AAGATCTGAAGAGAACAATGAGAAATGAATAGTTATCAACCTTCAAAGCGAGGA
Found at i:72902653 original size:48 final size:48
Alignment explanation
Indices: 72902568--72902817 Score: 392
Period size: 48 Copynumber: 5.2 Consensus size: 48
72902558 CAAGATAAAT
* * *
72902568 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
72902616 ATATGTATATGTGGTAAAGCCAAATAGCTAATATGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
72902664 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
72902712 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
72902760 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
72902808 ATGTGTATAT
1 ATATGTATAT
72902818 ATTGTGGCCG
Statistics
Matches: 184, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 184 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:72903004 original size:37 final size:37
Alignment explanation
Indices: 72902954--72903096 Score: 189
Period size: 37 Copynumber: 3.9 Consensus size: 37
72902944 ATATATTCCG
72902954 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCT
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCT
** * *
72902991 GGTAAGACCCGATGTTTACGTGTGGAGATTTTGTCCA
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCT
* *
72903028 GGTAAGACCCGATGACTATGTGTGGAGATTTTGT-CT
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCT
* * *
72903064 GGGTAAGACCTGATAACTACGTGTGGGGATTAT
1 -GGTAAGACCCGATGACTACGTGTGGAGATTAT
72903097 TCAAGCTAAA
Statistics
Matches: 92, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
36 1 0.01
37 91 0.99
ACGTcount: A:0.24, C:0.15, G:0.31, T:0.30
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCT
Found at i:72904041 original size:56 final size:56
Alignment explanation
Indices: 72903955--72904074 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
72903945 ACAAGGGATG
72903955 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
72904011 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
72904067 ATGGGCAA
1 ATGGGCAA
72904075 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:72906077 original size:47 final size:47
Alignment explanation
Indices: 72905525--72906070 Score: 811
Period size: 47 Copynumber: 11.6 Consensus size: 47
72905515 TATTTGAATA
*
72905525 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
72905572 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
72905621 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
72905670 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-ATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
72905716 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
72905765 AATGTGAAAGTG--TATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
72905810 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
72905857 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
72905904 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
72905951 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
72905998 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
72906045 GATGTG-AAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
72906071 TCCCGAAGGG
Statistics
Matches: 475, Mismatches: 15, Indels: 19
0.93 0.03 0.04
Matches are distributed among these distances:
45 43 0.09
46 41 0.09
47 250 0.53
48 26 0.05
49 115 0.24
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:72908900 original size:43 final size:43
Alignment explanation
Indices: 72908851--72908991 Score: 264
Period size: 43 Copynumber: 3.3 Consensus size: 43
72908841 GAAACTCGGG
*
72908851 GATATGTATTCGGGTCTTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
*
72908894 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
72908937 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
1 GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
72908980 GATATGTATTCG
1 GATATGTATTCG
72908992 TGTGACAGCC
Statistics
Matches: 95, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 95 1.00
ACGTcount: A:0.13, C:0.23, G:0.32, T:0.33
Consensus pattern (43 bp):
GATATGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGT
Found at i:72911513 original size:47 final size:47
Alignment explanation
Indices: 72911461--72912131 Score: 1162
Period size: 47 Copynumber: 14.3 Consensus size: 47
72911451 TACATGATAG
*
72911461 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
72911508 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
72911555 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
72911602 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
72911649 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
72911696 TATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
72911743 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
72911790 TATATGTGATAAGGCATAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
72911837 TATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
72911884 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
72911931 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
72911978 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * *
72912025 TATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * *
72912072 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
72912119 TAAATGTGATAAG
1 TATATGTGATAAG
72912132 TCCCGAAGGG
Statistics
Matches: 595, Mismatches: 29, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 595 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:72912078 original size:25 final size:25
Alignment explanation
Indices: 72912003--72912081 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
72911993 CTAATGGCCG
72912003 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * * ***
72912028 ATATGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
72912050 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
72912075 ATGTGAT
1 ATGTGAT
72912082 AGGGCCGAGT
Statistics
Matches: 37, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:72913058 original size:43 final size:43
Alignment explanation
Indices: 72912997--72913078 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
72912987 GGGTGTTACA
**
72912997 ATTCGGGACTTCGTGCCTAGCAGGCTTCGTGCCGGTGATATGT
1 ATTCGGGACTTCGTGCCTAGCAGGCTTAATGCCGGTGATATGT
*
72913040 ATTCGGGTCTTCGTGCCTAGCAGGCTTAATGCCGGTGAT
1 ATTCGGGACTTCGTGCCTAGCAGGCTTAATGCCGGTGAT
72913079 TCGAGCAAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.15, C:0.23, G:0.32, T:0.30
Consensus pattern (43 bp):
ATTCGGGACTTCGTGCCTAGCAGGCTTAATGCCGGTGATATGT
Found at i:72913268 original size:29 final size:29
Alignment explanation
Indices: 72913235--72913334 Score: 78
Period size: 29 Copynumber: 3.4 Consensus size: 29
72913225 ATGATTAGAG
*
72913235 GCACTGTGTGTGCAAATTCCGTTAACCGA
1 GCACTATGTGTGCAAATTCCGTTAACCGA
* * **
72913264 GCACTATGTGTGCGAGA-TCAG-TAATTGA
1 GCACTATGTGTGC-AAATTCCGTTAACCGA
* * * *
72913292 GGCACTGTGTGTGCGAATTCCTTTAACCAA
1 -GCACTATGTGTGCAAATTCCGTTAACCGA
*
72913322 GCATTATGTGTGC
1 GCACTATGTGTGC
72913335 GAGATTGGTA
Statistics
Matches: 52, Mismatches: 15, Indels: 8
0.69 0.20 0.11
Matches are distributed among these distances:
28 6 0.12
29 40 0.77
30 6 0.12
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCAAATTCCGTTAACCGA
Found at i:72913360 original size:29 final size:29
Alignment explanation
Indices: 72913264--72913365 Score: 82
Period size: 29 Copynumber: 3.5 Consensus size: 29
72913254 CGTTAACCGA
*
72913264 GCACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
* ** ** *
72913293 GCACTGTGTGTGCGA-ATTCCTTTAA-CCAA
1 GCACTATGTGTGCGAGATT--AGTAATTGAG
* *
72913322 GCATTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
*
72913351 GCACTGTGTGTGCGA
1 GCACTATGTGTGCGA
72913366 TTTCTTCAAC
Statistics
Matches: 53, Mismatches: 16, Indels: 8
0.69 0.21 0.10
Matches are distributed among these distances:
28 5 0.09
29 42 0.79
30 6 0.11
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:72913410 original size:28 final size:28
Alignment explanation
Indices: 72913326--72913418 Score: 71
Period size: 28 Copynumber: 3.3 Consensus size: 28
72913316 AACCAAGCAT
* *
72913326 TATGTGTGCGAGATTGGTAATTGAGGCAC
1 TATGTGTGCGAGATTGGTCACTG-GGCAC
* * ** * *
72913355 TGTGTGTGCGA-TTTCTTCAACCGAGCAC
1 TATGTGTGCGAGATTGGTC-ACTGGGCAC
*
72913383 TATGTGTGCGAGATTGGTCAGTGGGCAC
1 TATGTGTGCGAGATTGGTCACTGGGCAC
*
72913411 TAAGTGTG
1 TATGTGTG
72913419 TGAAATGAGA
Statistics
Matches: 46, Mismatches: 16, Indels: 5
0.69 0.24 0.07
Matches are distributed among these distances:
28 30 0.65
29 16 0.35
ACGTcount: A:0.20, C:0.15, G:0.33, T:0.31
Consensus pattern (28 bp):
TATGTGTGCGAGATTGGTCACTGGGCAC
Found at i:72913420 original size:58 final size:58
Alignment explanation
Indices: 72913232--72913400 Score: 252
Period size: 58 Copynumber: 2.9 Consensus size: 58
72913222 CGAATGATTA
* **
72913232 GAGGCACTGTGTGTGCAAATTCCGTT-AACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCC-TTCAACCGAGCACTATGTGTGCGAGATTGGTAATT
* * *
72913290 GAGGCACTGTGTGTGCGAATTCCTTTAACCAAGCATTATGTGTGCGAGATTGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTCAACCGAGCACTATGTGTGCGAGATTGGTAATT
*
72913348 GAGGCACTGTGTGTGCG-ATTTCTTCAACCGAGCACTATGTGTGCGAGATTGGT
1 GAGGCACTGTGTGTGCGAATTCCTTCAACCGAGCACTATGTGTGCGAGATTGGT
72913401 CAGTGGGCAC
Statistics
Matches: 101, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
57 34 0.34
58 67 0.66
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTCAACCGAGCACTATGTGTGCGAGATTGGTAATT
Found at i:72915956 original size:40 final size:40
Alignment explanation
Indices: 72915901--72916155 Score: 385
Period size: 40 Copynumber: 6.4 Consensus size: 40
72915891 GATGATAACG
* *
72915901 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
72915941 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
72915981 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
72916021 GGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
72916060 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
72916100 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
72916140 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
72916156 TACTTGGTTT
Statistics
Matches: 204, Mismatches: 8, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
39 55 0.27
40 148 0.73
41 1 0.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:72916071 original size:79 final size:80
Alignment explanation
Indices: 72915901--72916155 Score: 385
Period size: 79 Copynumber: 3.2 Consensus size: 80
72915891 GATGATAACG
* *
72915901 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGT
72915965 GCGAGTTACTA-ATTCC
65 GCGAGTTACTATA-TCC
72915981 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
72916045 CGAGTTACTATATCC
66 CGAGTTACTATATCC
** *
72916060 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCCGGGCTAAGTCCCGAAGGCATTTGAG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
72916125 CGAG-TAGCTATATCC
66 CGAGTTA-CTATATCC
* *
72916140 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
72916156 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
79 91 0.55
80 72 0.44
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGTTACTATATCC
Found at i:72916122 original size:119 final size:120
Alignment explanation
Indices: 72915901--72916155 Score: 385
Period size: 119 Copynumber: 2.1 Consensus size: 120
72915891 GATGATAACG
*
72915901 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
** *
72915966 CGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
66 CGAACTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
*
72916021 GGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGT
72916084 GCGAACTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCC
65 GCGAACTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCC
* *
72916140 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
72916156 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
118 12 0.10
119 103 0.83
120 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (120 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAACTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCC
Found at i:72920146 original size:48 final size:48
Alignment explanation
Indices: 72920075--72920324 Score: 392
Period size: 48 Copynumber: 5.2 Consensus size: 48
72920065 CAAGATAAAT
* * *
72920075 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
72920123 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGGAATATCTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
72920171 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATACGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
72920219 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
72920267 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
72920315 ATGTGTATAT
1 ATATGTATAT
72920325 ATTGTGGCCG
Statistics
Matches: 184, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 184 1.00
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:72920507 original size:37 final size:37
Alignment explanation
Indices: 72920457--72920603 Score: 231
Period size: 37 Copynumber: 4.0 Consensus size: 37
72920447 GGAAATATAT
72920457 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
72920494 TCCGGGTAAGACCCGATGACTACGTGTGGAAATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
72920531 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
72920568 TCCGGGTAAGACCCAATAACTACCTGTGGGGATTAT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
72920604 TCGAGCTAAA
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:72923028 original size:40 final size:41
Alignment explanation
Indices: 72922954--72923034 Score: 121
Period size: 40 Copynumber: 2.0 Consensus size: 41
72922944 GTTGTATCAA
72922954 TCTCGCACACTAAGTGCATATATATATACAAAGCTATCTCGT
1 TCTCGCACACTAAGTG-ATATATATATACAAAGCTATCTCGT
*
72922996 TCTCGCACACTAAGTG-TATATATAT-CTGAAGCTATCTCG
1 TCTCGCACACTAAGTGATATATATATAC-AAAGCTATCTCG
72923035 ACTTCACACA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
39 1 0.03
40 20 0.54
42 16 0.43
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (41 bp):
TCTCGCACACTAAGTGATATATATATACAAAGCTATCTCGT
Found at i:72923045 original size:40 final size:41
Alignment explanation
Indices: 72922954--72923051 Score: 103
Period size: 40 Copynumber: 2.4 Consensus size: 41
72922944 GTTGTATCAA
* *
72922954 TCTCGCACACTAAGTGCATATATATATACAAAGCTATCTCGT
1 TCTCACACACTAAGTG-ATATATATATACAAAGCTATCTCGC
* *
72922996 TCTCGCACACTAAGTG-TATATATAT-CTGAAGCTATCTCGAC
1 TCTCACACACTAAGTGATATATATATAC-AAAGCTATCTCG-C
*
72923037 T-TCACACACCAAGTG
1 TCTCACACACTAAGTG
72923052 CCCATAATTA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
39 1 0.02
40 32 0.64
41 1 0.02
42 16 0.32
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.30
Consensus pattern (41 bp):
TCTCACACACTAAGTGATATATATATACAAAGCTATCTCGC
Found at i:72929584 original size:17 final size:17
Alignment explanation
Indices: 72929564--72929596 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
72929554 CTTTTATTAA
72929564 GTTTTTAAGATTCATTC
1 GTTTTTAAGATTCATTC
72929581 GTTTTTAAGATTCATT
1 GTTTTTAAGATTCATT
72929597 TGTTCTACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.09, G:0.12, T:0.55
Consensus pattern (17 bp):
GTTTTTAAGATTCATTC
Found at i:72935410 original size:13 final size:13
Alignment explanation
Indices: 72935392--72935416 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72935382 GACAGGGGAC
72935392 ACATGACCGTGTA
1 ACATGACCGTGTA
72935405 ACATGACCGTGT
1 ACATGACCGTGT
72935417 GTCACACACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (13 bp):
ACATGACCGTGTA
Found at i:72936374 original size:23 final size:22
Alignment explanation
Indices: 72936338--72936420 Score: 103
Period size: 23 Copynumber: 3.7 Consensus size: 22
72936328 AAGCTCCTTC
*
72936338 GAGCTGAACAGTAAGCTCTATT
1 GAGCTAAACAGTAAGCTCTATT
*
72936360 AAGCTAAAACAGTAAGCTCTATT
1 GAGCT-AAACAGTAAGCTCTATT
* *
72936383 GAGCTAAACGGTAAGCTCTAAT
1 GAGCTAAACAGTAAGCTCTATT
*
72936405 GAGATGAAACAGTAAG
1 GAGCT-AAACAGTAAG
72936421 ATCTTACGAG
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
22 23 0.44
23 29 0.56
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.23
Consensus pattern (22 bp):
GAGCTAAACAGTAAGCTCTATT
Found at i:72936377 original size:45 final size:45
Alignment explanation
Indices: 72936326--72936433 Score: 112
Period size: 45 Copynumber: 2.4 Consensus size: 45
72936316 GTCATGGTCG
* * *
72936326 GTAAGCTCCT-TCGAGCTGAACAGTAAGCTCTATTAAGCTAAAACA
1 GTAAGCT-CTATCGAGCTAAACAGTAAGCTCTAATAAGATAAAACA
* * * *
72936371 GTAAGCTCTATTGAGCTAAACGGTAAGCTCTAATGAGATGAAACA
1 GTAAGCTCTATCGAGCTAAACAGTAAGCTCTAATAAGATAAAACA
*
72936416 GTAAGATCT-TACGAGCTA
1 GTAAGCTCTAT-CGAGCTA
72936434 TGGTGAGTCC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
44 3 0.06
45 49 0.94
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (45 bp):
GTAAGCTCTATCGAGCTAAACAGTAAGCTCTAATAAGATAAAACA
Found at i:72943794 original size:40 final size:40
Alignment explanation
Indices: 72943740--72943973 Score: 371
Period size: 40 Copynumber: 5.9 Consensus size: 40
72943730 GATATAGCTT
*
72943740 CTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
72943780 CTCGCACAATTGCCTTCGGGACTTAGCCCAGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
72943820 CTAGCACAATTGCCTTCGAGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* * *
72943860 CTCGCACAATTGCCTTCGGGACTTGGCCAGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
72943900 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
72943940 CTCGCACAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
72943974 CAATCTGAAT
Statistics
Matches: 179, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 13 0.07
40 166 0.93
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:72944484 original size:19 final size:20
Alignment explanation
Indices: 72944449--72944486 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
72944439 TAACCGAATA
*
72944449 CATGTCTATGTGGCCGATTG
1 CATGTCTATGAGGCCGATTG
72944469 CATGTCTAT-AGGCCGATT
1 CATGTCTATGAGGCCGATT
72944487 ATATGCTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.34
Consensus pattern (20 bp):
CATGTCTATGAGGCCGATTG
Found at i:72951054 original size:40 final size:40
Alignment explanation
Indices: 72951010--72951233 Score: 387
Period size: 40 Copynumber: 5.6 Consensus size: 40
72951000 CTTGCTCAAA
72951010 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
* *
72951050 TGCCTTCGAGACTTAGCCCGGTTATAGTAACTAGCACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
72951090 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
* *
72951130 TGCCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
* *
72951170 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
72951210 TGCCTTCGGG-CTTAGCCCGGTTAT
1 TGCCTTCGGGACTTAGCCCGGTTAT
72951234 CAATCCGAAT
Statistics
Matches: 175, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 13 0.07
40 162 0.93
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAT
Found at i:72955824 original size:41 final size:41
Alignment explanation
Indices: 72955767--72955848 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
72955757 ATGTCGTCAA
*
72955767 TGAACACAACAACAAATCTGTCTAAATACAGTCTAAAGATC
1 TGAACACAACAACAAATCTGTCTAAATACAGACTAAAGATC
* *
72955808 TGAACACAACAACAAATCTGTTTAAATACGGACTAAAGATC
1 TGAACACAACAACAAATCTGTCTAAATACAGACTAAAGATC
72955849 CGATTTATCA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.46, C:0.21, G:0.11, T:0.22
Consensus pattern (41 bp):
TGAACACAACAACAAATCTGTCTAAATACAGACTAAAGATC
Found at i:72960656 original size:23 final size:22
Alignment explanation
Indices: 72960619--72960663 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
72960609 TATTTAGCCA
72960619 TGTGATATGGCTTGGTTTTGGT
1 TGTGATATGGCTTGGTTTTGGT
*
72960641 TGTGATTATGGTTTGGTTTTGGT
1 TGTGA-TATGGCTTGGTTTTGGT
72960664 ATATGAAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.09, C:0.02, G:0.36, T:0.53
Consensus pattern (22 bp):
TGTGATATGGCTTGGTTTTGGT
Found at i:72963922 original size:44 final size:43
Alignment explanation
Indices: 72963827--72963944 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 43
72963817 AAATAAGTAA
* *
72963827 CCAAAGCTGTATCAA-TCTCGCACACTAAGTGCATATATATAT
1 CCAAAGCTATCTCAATTCTCGCACACTAAGTGCATATATATAT
*
72963869 CCAAAGCTATCTC-GTTCTCGCACACTAAGTGCAAATATATATAT
1 CCAAAGCTATCTCAATTCTCGCACACTAAGTGC--ATATATATAT
*** *
72963913 CTGTAGCTATCTCAATT-TCGCACACCAAGTGC
1 CCAAAGCTATCTCAATTCTCGCACACTAAGTGC
72963945 CCATAATGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
42 28 0.44
44 34 0.53
45 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (43 bp):
CCAAAGCTATCTCAATTCTCGCACACTAAGTGCATATATATAT
Found at i:72977977 original size:42 final size:42
Alignment explanation
Indices: 72977930--72978035 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 42
72977920 AGATTTATGC
* * * *
72977930 GTAAGACCATGTTTGGGACATCGACATC-GTATTTGATTTCGT
1 GTAAGACCATGTCTGGGACAT-GACATCAATATTTGATTACAT
* *
72977972 GTAAGACCCTGTCTGGGACAGTGGCATCAATATTTGATTACAT
1 GTAAGACCATGTCTGGGACA-TGACATCAATATTTGATTACAT
*
72978015 GTAAGACCACGTCTGGGACAT
1 GTAAGACCATGTCTGGGACAT
72978036 TGGCATTGTA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 24 0.44
43 30 0.56
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
GTAAGACCATGTCTGGGACATGACATCAATATTTGATTACAT
Found at i:72980233 original size:43 final size:43
Alignment explanation
Indices: 72980172--72980282 Score: 204
Period size: 43 Copynumber: 2.6 Consensus size: 43
72980162 TAGCATTACG
72980172 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAA
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAA
* *
72980215 CCTGCAAGGCACGAAGGCCCGAATACACATCACCGGCACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAA
72980258 CCTGCTAGGCACGAAGGCCCGAATA
1 CCTGCTAGGCACGAAGGCCCGAATA
72980283 TAATACCAGC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.32, C:0.34, G:0.25, T:0.09
Consensus pattern (43 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAA
Found at i:72980323 original size:38 final size:38
Alignment explanation
Indices: 72980275--72980476 Score: 262
Period size: 38 Copynumber: 5.3 Consensus size: 38
72980265 GGCACGAAGG
* * * *
72980275 CCCGAATATAATACCAGCACTAGGCCTGCAGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
*
72980313 CCCGGATATAATACCAGCACGAAGCCTAC-GAGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCAG-GATTTAA
** * *
72980351 CCCGGATATTTTACCAGCACGAAACCTGCAGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCAGG-ATTTAA
* *
72980390 GCCCGGATATAATACCAGCACGAAGCTTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
*
72980429 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
72980467 CCCGGATATA
1 CCCGGATATA
72980477 CATCGAATAT
Statistics
Matches: 143, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
37 1 0.01
38 104 0.73
39 11 0.08
40 27 0.19
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
Found at i:72980407 original size:78 final size:76
Alignment explanation
Indices: 72980275--72980476 Score: 260
Period size: 78 Copynumber: 2.6 Consensus size: 76
72980265 GGCACGAAGG
* * ** * *
72980275 CCCGAATATAATACCAGCACTAGGCCTGCAGGATTTATCCCGGATATAATACCAGCACGAAGCCT
1 CCCGGATATAATACCAGCACGAAACCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
72980340 ACGAGATTTAA
66 ACGAGATTTAA
** **
72980351 CCCGGATATTTTACCAGCACGAAACCTGCAGGTCTTTAAGCCCGGATATAATACCAGCACGAAGC
1 CCCGGATATAATACCAGCACGAAACCTGC-GGGATTTAA-CCCGGATATAATACCAGCACGAAGC
* * *
72980416 TTGCGGGATTTAA
64 CTACGAGATTTAA
*
72980429 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGATATA
1 CCCGGATATAATACCAGCACGAAACCTGCGGGATTTAACCCGGATATA
72980477 CATCGAATAT
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
76 33 0.31
77 12 0.11
78 61 0.58
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (76 bp):
CCCGGATATAATACCAGCACGAAACCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
ACGAGATTTAA
Found at i:72984641 original size:43 final size:42
Alignment explanation
Indices: 72984567--72984647 Score: 105
Period size: 41 Copynumber: 1.9 Consensus size: 42
72984557 TTTCGCCTGT
72984567 TAGGCTCGAGGCCCGATATCAGTTCACCGGCA-TATAGCTGC
1 TAGGCTCGAGGCCCGATATCAGTTCACCGGCATTATAGCTGC
72984608 TAGGCTCGAAGGCCCGA-AT-AGTATCTCACCGGCATTATAG
1 TAGGCTCG-AGGCCCGATATCAG--T-TCACCGGCATTATAG
72984648 TTTGCTAAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
40 2 0.06
41 10 0.29
42 9 0.26
43 9 0.26
44 5 0.14
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (42 bp):
TAGGCTCGAGGCCCGATATCAGTTCACCGGCATTATAGCTGC
Found at i:72985050 original size:43 final size:43
Alignment explanation
Indices: 72985003--72985113 Score: 168
Period size: 43 Copynumber: 2.6 Consensus size: 43
72984993 CGGCATTACG
72985003 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAA
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAA
* * ** *
72985046 CCTGCAAGGCACGAAGGCTCGAATACACATCACCGGTACGAAG
1 CCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAA
*
72985089 CCTGCTAGGCACGAAGGCCCAAATA
1 CCTGCTAGGCACGAAGGCCCGAATA
72985114 TAATACCAGC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.33, C:0.32, G:0.23, T:0.11
Consensus pattern (43 bp):
CCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAA
Found at i:72986920 original size:18 final size:20
Alignment explanation
Indices: 72986897--72986939 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
72986887 TTAAGAAAGG
*
72986897 GACTAT-ATAT-TGATATTT
1 GACTATGATATATGATATAT
72986915 GACTATGATATGATGATATAT
1 GACTATGATAT-ATGATATAT
72986936 GACT
1 GACT
72986940 TTTGATTGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 6 0.29
19 4 0.19
21 11 0.52
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.42
Consensus pattern (20 bp):
GACTATGATATATGATATAT
Found at i:72994093 original size:59 final size:59
Alignment explanation
Indices: 72993999--72994118 Score: 195
Period size: 59 Copynumber: 2.0 Consensus size: 59
72993989 TTGATACGTA
* *
72993999 ATACATGCTAGGGTCTGGGTGCTTTTGAGTGGCCCCATTGAAAGGCATGTGAATATGTG
1 ATACATGCTAGGGTCCGGGTGCTTTTGAGTAGCCCCATTGAAAGGCATGTGAATATGTG
* * *
72994058 ATACATGCTAGGGTCCGGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGATTATGTG
1 ATACATGCTAGGGTCCGGGTGCTTTTGAGTAGCCCCATTGAAAGGCATGTGAATATGTG
72994117 AT
1 AT
72994119 CTATGGCATT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.31
Consensus pattern (59 bp):
ATACATGCTAGGGTCCGGGTGCTTTTGAGTAGCCCCATTGAAAGGCATGTGAATATGTG
Found at i:72996844 original size:56 final size:57
Alignment explanation
Indices: 72996755--72996868 Score: 205
Period size: 56 Copynumber: 2.0 Consensus size: 57
72996745 TGGGAGTGGC
72996755 CGAATTAGGGAATTGAAGAGGGAAAAATTCGGCAGAGGGTTTAGGTTAATA-TTCGG
1 CGAATTAGGGAATTGAAGAGGGAAAAATTCGGCAGAGGGTTTAGGTTAATATTTCGG
72996811 CGAATTTAGGGAATTGAAGAGGG-AAAATTCGGCAGAGGGTTTAGGTTAATATTTCGG
1 CGAA-TTAGGGAATTGAAGAGGGAAAAATTCGGCAGAGGGTTTAGGTTAATATTTCGG
72996868 C
1 C
72996869 ACCTAGGGCT
Statistics
Matches: 56, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
56 32 0.57
57 24 0.43
ACGTcount: A:0.32, C:0.08, G:0.33, T:0.26
Consensus pattern (57 bp):
CGAATTAGGGAATTGAAGAGGGAAAAATTCGGCAGAGGGTTTAGGTTAATATTTCGG
Found at i:73005785 original size:26 final size:25
Alignment explanation
Indices: 73005750--73005802 Score: 79
Period size: 26 Copynumber: 2.1 Consensus size: 25
73005740 TTCTTAGTTC
**
73005750 AATTCGGCAAAAGCTGAAATGCCGA
1 AATTCGGCAAAAGCCAAAATGCCGA
73005775 AATTCTGGCAAAAGCCAAAATGCCGA
1 AATTC-GGCAAAAGCCAAAATGCCGA
73005801 AA
1 AA
73005803 GGGATCTCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.15
Consensus pattern (25 bp):
AATTCGGCAAAAGCCAAAATGCCGA
Found at i:73011021 original size:37 final size:37
Alignment explanation
Indices: 73010971--73011049 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
73010961 TTATTACGAA
* *
73010971 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
73011008 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
73011045 GTCTT
1 GTCTT
73011050 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:73011246 original size:47 final size:47
Alignment explanation
Indices: 73011168--73011734 Score: 974
Period size: 47 Copynumber: 12.1 Consensus size: 47
73011158 CCCTTCGGGA
* * * * * * *
73011168 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73011215 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73011262 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73011309 CTTATTACATATATACACTTTCACATTCATCACAT-GGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73011355 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73011402 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73011449 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73011496 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73011543 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73011590 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73011637 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73011684 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73011731 CTTA
1 CTTA
73011735 CTATCATTTC
Statistics
Matches: 498, Mismatches: 21, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 0.09
47 454 0.91
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73019794 original size:16 final size:16
Alignment explanation
Indices: 73019773--73019816 Score: 60
Period size: 14 Copynumber: 3.0 Consensus size: 16
73019763 GTGTAGTACT
73019773 ATGTGCAGGCTACTAC
1 ATGTGCAGGCTACTAC
73019789 ATGTGCA-G-TACTA-
1 ATGTGCAGGCTACTAC
73019802 A-GTGCAGGCTACTAC
1 ATGTGCAGGCTACTAC
73019817 GTGTACCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
12 5 0.20
13 2 0.08
14 10 0.40
15 1 0.04
16 7 0.28
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (16 bp):
ATGTGCAGGCTACTAC
Found at i:73019799 original size:28 final size:28
Alignment explanation
Indices: 73019759--73019816 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
73019749 TTGTGAGAAC
* *
73019759 ACATGTGTAGTACTATGTGCAGGCTACT
1 ACATGTGCAGTACTAAGTGCAGGCTACT
73019787 ACATGTGCAGTACTAAGTGCAGGCTACT
1 ACATGTGCAGTACTAAGTGCAGGCTACT
73019815 AC
1 AC
73019817 GTGTACCAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (28 bp):
ACATGTGCAGTACTAAGTGCAGGCTACT
Found at i:73019849 original size:50 final size:50
Alignment explanation
Indices: 73019788--73020029 Score: 229
Period size: 50 Copynumber: 4.8 Consensus size: 50
73019778 CAGGCTACTA
* * *
73019788 CATGTGCAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAAGTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAAGTCG
* * * *
73019838 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ACAACTTCAA-TCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGA-TAGTT-AAGTCG
** * * * *
73019889 TGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAAGTCG
* * * * ** * *
73019939 CGTGTGTAGTACTAAGTGTAGGCTACTACGTATACTGGATTGTT-GGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAAGTCG
* *
73019988 CATGTGTAGTACTAAGTTCAGGCTACTATGCGTACCAGATAG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
73020030 CTTCAGTTAC
Statistics
Matches: 154, Mismatches: 33, Indels: 11
0.78 0.17 0.06
Matches are distributed among these distances:
49 38 0.25
50 75 0.49
51 39 0.25
52 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAAGTCG
Found at i:73020247 original size:16 final size:15
Alignment explanation
Indices: 73020226--73020255 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
73020216 GAATGAAGTA
73020226 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
73020242 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
73020256 TAAAACAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:73045077 original size:40 final size:40
Alignment explanation
Indices: 73045033--73045108 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
73045023 CACTTATTAT
*
73045033 CTTGTATTTAGTCTGAGAAAATGCATTTTATTTGATTTTA
1 CTTGTATTTAGTCTGAGAAAATGCATTCTATTTGATTTTA
*
73045073 CTTGTATTTAGTCTTAGAAAATGCATTCTATTTGAT
1 CTTGTATTTAGTCTGAGAAAATGCATTCTATTTGAT
73045109 CTGATTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.28, C:0.09, G:0.14, T:0.49
Consensus pattern (40 bp):
CTTGTATTTAGTCTGAGAAAATGCATTCTATTTGATTTTA
Found at i:73053868 original size:46 final size:45
Alignment explanation
Indices: 73053810--73053978 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 45
73053800 AACCCGCCCA
* *
73053810 TAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCC
* *
73053855 TTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C
1 -TAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCC
* * *
73053904 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCC
*
73053948 ATAAGTGAACTCGGACTCAACTCAACGAGTT
1 -TAAGCGAACTCGGACTCAACTCAACGAGTT
73053979 TGGATGCTCA
Statistics
Matches: 103, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 55 0.53
47 28 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCC
Found at i:73053943 original size:93 final size:93
Alignment explanation
Indices: 73053814--73053985 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
73053804 CGCCCATAAG
* * * *
73053814 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCTTAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73053879 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
73053907 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
73053972 ACGAGTTTGGATGC
66 ACGAGTTCGGATGC
73053986 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73054001 original size:46 final size:44
Alignment explanation
Indices: 73053858--73054001 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
73053848 CGCATCCTTA
73053858 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * *
73053905 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
*
73053951 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
73053997 AGTGA
1 AGTGA
73054002 CATGTCACTT
Statistics
Matches: 79, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.11
45 1 0.01
46 32 0.41
47 31 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:73061555 original size:93 final size:94
Alignment explanation
Indices: 73061395--73061567 Score: 312
Period size: 93 Copynumber: 1.9 Consensus size: 94
73061385 CGCCCATAAG
* *
73061395 CGAACTCGGACTCAACTCAAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
73061460 AACGAGTTCGGATGCCTAGTTACATCTCA
66 AACGAGTTCGGATGCCTAGTTACATCTCA
*
73061489 CGAACTCGGACTCAACTC-AACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
73061553 AACGAGTTCGGATGC
66 AACGAGTTCGGATGC
73061568 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
93 58 0.76
94 18 0.24
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (94 bp):
CGAACTCGGACTCAACTCAAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
AACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73061557 original size:46 final size:46
Alignment explanation
Indices: 73061388--73061564 Score: 209
Period size: 47 Copynumber: 3.8 Consensus size: 46
73061378 TGTAACCCGC
* * *
73061388 CCATAAGCGAACTCGGACTCAACTCAAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTC-AACGAGTTCGGACATTCGCAT
* *
73061435 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
73061485 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73061528 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73061565 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 39 0.35
47 53 0.48
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73069823 original size:19 final size:18
Alignment explanation
Indices: 73069799--73069834 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
73069789 CCATTTTTAA
*
73069799 TTTTTATTTTAATATTTTG
1 TTTTTAATTTAAT-TTTTG
73069818 TTTTTAATTTAATTTTT
1 TTTTTAATTTAATTTTT
73069835 AAATTCTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTTTAATTTAATTTTTG
Found at i:73072816 original size:19 final size:18
Alignment explanation
Indices: 73072794--73072860 Score: 57
Period size: 19 Copynumber: 3.6 Consensus size: 18
73072784 TTAATTTTAA
73072794 TTTTTTATTTTTGTTCTTG
1 TTTTTTATTTTTGTT-TTG
73072813 TTTTTCTA-TTTTGATTTTG
1 TTTTT-TATTTTTG-TTTTG
* **
73072832 CTTTTTGCTTTTGTTTTTG
1 TTTTTTATTTTTG-TTTTG
73072851 TTTTTT-TTTT
1 TTTTTTATTTT
73072861 AAATTTATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
18 4 0.10
19 32 0.80
20 4 0.10
ACGTcount: A:0.04, C:0.06, G:0.10, T:0.79
Consensus pattern (18 bp):
TTTTTTATTTTTGTTTTG
Found at i:73072837 original size:7 final size:6
Alignment explanation
Indices: 73072795--73072860 Score: 62
Period size: 6 Copynumber: 10.8 Consensus size: 6
73072785 TAATTTTAAT
* * * * *
73072795 TTTTTA TTTTTG TTCTTG TTTTTC TATTTTG ATTTTG CTTTTTG CTTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG T-TTTTG TTTTTG -TTTTTG TTTTTG
73072845 TTTTTG TTTTT- TTTTT
1 TTTTTG TTTTTG TTTTT
73072861 AAATTTATTT
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
5 5 0.10
6 35 0.71
7 9 0.18
ACGTcount: A:0.05, C:0.06, G:0.11, T:0.79
Consensus pattern (6 bp):
TTTTTG
Found at i:73076611 original size:93 final size:93
Alignment explanation
Indices: 73076499--73076670 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
73076489 CGCCCATAAG
* *
73076499 CGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCACATCCATAAGTGAACTCAGACTTAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGGA-CATTCACATCCATAAGTGAACTCAGACTCAACTC
73076563 AACGAGCTCGGATGCCTAGTTACATCTCT
65 AACGAGCTCGGATGCCTAGTTACATCTCT
* * * *
73076592 CGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
*
73076657 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
73076671 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 69 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:73076649 original size:46 final size:45
Alignment explanation
Indices: 73076492--73076663 Score: 143
Period size: 46 Copynumber: 3.7 Consensus size: 45
73076482 TGTAACCCGC
* * * *
73076492 CCATAAGCGAACTCGGACTCAACTCAACGAG-CTCGAGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGA-CATTC-CAT
* * * * *
73076538 CCATAAGTGAACTCAGACTTAACTCAACGAGCTCGG--ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACATTCC-A--T
* ***
73076584 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTTGGACATTC-CAT
73076631 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
73076664 CGGATGCTCA
Statistics
Matches: 97, Mismatches: 21, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 58 0.60
47 30 0.31
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACATTCCAT
Found at i:73076686 original size:46 final size:45
Alignment explanation
Indices: 73076500--73076686 Score: 127
Period size: 46 Copynumber: 4.0 Consensus size: 45
73076490 GCCCATAAGC
73076500 GAACTCGGACTCAACTCAACGAGCTC-GA-GCGTTC-ACATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGC--TCAACATCC-T-AGT
* * *
73076546 GAACTCAGACTTAACTCAACGAGCTCGGATGC-CTAGTTACATCTCT--C
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTC-A---ACATC-CTAGT
* * *** *
73076593 GAACTCGGACTCAACTCAACGAGTTTGGACATTC-GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACATCC-T-AGT
*
73076639 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAA-CATCCTAGT
73076685 GA
1 GA
73076687 CACGTCACTT
Statistics
Matches: 109, Mismatches: 17, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
45 1 0.01
46 59 0.54
47 28 0.26
48 8 0.07
50 6 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCTCAACATCCTAGT
Found at i:73079445 original size:44 final size:45
Alignment explanation
Indices: 73079394--73079479 Score: 138
Period size: 45 Copynumber: 1.9 Consensus size: 45
73079384 TATGTAATCT
73079394 GAACTCATTGAGTTGT-GTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
** *
73079438 GAACTCATTGAGTTGTGGTCTGAGTTTGTGATATGTGTGACA
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACA
73079480 CATGTTTTGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 16 0.42
45 22 0.58
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.37
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
Found at i:73087219 original size:14 final size:14
Alignment explanation
Indices: 73087202--73087234 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
73087192 TTTGAATTTT
*
73087202 TACATTTGCATACG
1 TACATTTGCATACA
73087216 TACATTTGCATACA
1 TACATTTGCATACA
73087230 TACAT
1 TACAT
73087235 ACATATGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.36
Consensus pattern (14 bp):
TACATTTGCATACA
Found at i:73087978 original size:18 final size:18
Alignment explanation
Indices: 73087944--73087978 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
73087934 GAGAATTATT
* *
73087944 GGTACTGTGACTGAATGC
1 GGTACTGTGAATAAATGC
73087962 GGTACTGTGAATAAATG
1 GGTACTGTGAATAAATG
73087979 TGTTACTGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.11, G:0.31, T:0.29
Consensus pattern (18 bp):
GGTACTGTGAATAAATGC
Found at i:73096793 original size:16 final size:17
Alignment explanation
Indices: 73096760--73096794 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
73096750 GTTCGGGGCA
73096760 TAAAAAAAATTTACATT
1 TAAAAAAAATTTACATT
*
73096777 TAAAAAAATTTTA-ATT
1 TAAAAAAAATTTACATT
73096793 TA
1 TA
73096795 CTCACATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAAAAAAATTTACATT
Found at i:73100139 original size:23 final size:22
Alignment explanation
Indices: 73100096--73100151 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
73100086 AAAGGGTATC
* *
73100096 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
73100117 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
73100140 TACATATCATAT
1 TACAAATCATAT
73100152 ATGAGATTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.10
22 16 0.53
23 11 0.37
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:73108364 original size:46 final size:45
Alignment explanation
Indices: 73108314--73108489 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 45
73108304 TGGTTGAGCA
73108314 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
73108360 TCCGAACTCGTTGATTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
73108407 TCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
73108453 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73108490 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.62
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:73108472 original size:93 final size:93
Alignment explanation
Indices: 73108311--73108481 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
73108301 GGATGGTTGA
* * * *
73108311 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGATT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
73108376 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
73108404 GCATCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GCATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
73108468 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
73108482 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:73115661 original size:49 final size:49
Alignment explanation
Indices: 73115599--73115730 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 49
73115589 CGAGATATAC
* *
73115599 AAGCTAGTGTAAGACCTATCTGGGACATGGCATCGACAC-CGATAGATGA
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGA
* * * * * *
73115648 GAGCCAGTGTAAGACCTGTCTAGGACACGACATCGGCCTCGATATATGA
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA
*
73115697 AAGCCAGTGTAAGACTTGTCTGGGACATGGCATC
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATC
73115731 AACTTTGATG
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
48 1 0.01
49 68 0.99
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (49 bp):
AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGA
Found at i:73119864 original size:48 final size:48
Alignment explanation
Indices: 73119764--73120003 Score: 348
Period size: 48 Copynumber: 5.1 Consensus size: 48
73119754 ACGAGATCCC
* * *
73119764 GTGTAAGACCATGTTTGGGACATGGCATC--CG-AGATCA---GAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGAT-ATGTGTGCCA
*
73119807 GTGTAAGACCATATCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
* **
73119855 GTGTAAGACCATGTCTAGGACATAACATCGGCGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
*
73119903 GTGTAAGACCATGTCTGGGACATGGCATCGACGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
*
73119951 GTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
73119999 GTGTA
1 GTGTA
73120004 TGTGACACCC
Statistics
Matches: 177, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
43 27 0.15
45 3 0.02
46 3 0.02
48 144 0.81
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
Found at i:73122486 original size:47 final size:47
Alignment explanation
Indices: 73122434--73122839 Score: 632
Period size: 47 Copynumber: 8.6 Consensus size: 47
73122424 GATAATTGTG
* *
73122434 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
73122481 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
73122528 ATGTGAAAGTGTATATATGTGTTAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
73122575 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
73122624 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
73122671 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
73122720 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
73122767 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGACCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
73122814 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
73122840 TCCCGAAGGG
Statistics
Matches: 332, Mismatches: 23, Indels: 8
0.91 0.06 0.02
Matches are distributed among these distances:
47 242 0.73
49 90 0.27
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:73122600 original size:143 final size:143
Alignment explanation
Indices: 73122434--73122839 Score: 640
Period size: 143 Copynumber: 2.9 Consensus size: 143
73122424 GATAATTGTG
73122434 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
73122497 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTTAAGGCCGAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
73122562 GCCAATGTGATGA
131 GCCAATGTGATGA
73122575 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
73122640 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAA
*
73122705 TGGCCGATGTGATGA
129 TGGCCAATGTGATGA
*
73122720 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * * *
73122783 ATGTGACAGGGCCGAGTGACCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73122840 TCCCGAAGGG
Statistics
Matches: 246, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
141 19 0.08
142 2 0.01
143 181 0.74
145 44 0.18
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGA
Found at i:73122615 original size:96 final size:94
Alignment explanation
Indices: 73122434--73122839 Score: 632
Period size: 96 Copynumber: 4.3 Consensus size: 94
73122424 GATAATTGTG
* * *
73122434 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
73122499 GTGATAAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* * * *
73122528 ATGTGAAAGTGTATATATGTGTTAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATAT
73122593 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
73122624 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATAT
73122689 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
73122720 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * * * * * *
73122785 GTGACAGGGCCGAGTGACCAACGTGATGG
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
73122814 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
73122840 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
94 106 0.36
96 186 0.64
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:73129134 original size:48 final size:48
Alignment explanation
Indices: 73129019--73129242 Score: 268
Period size: 48 Copynumber: 4.6 Consensus size: 48
73129009 TGAGATCCCG
* * *** * * *
73129019 TGTAAGACCATGTCTGGGTCATGGTATCGGCAACCGAGATGAGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-GTTGATATGTGTGCCAA
* *
73129068 TGCAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGTGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAA
** *
73129116 TGTAAGACCATGTCTGGGACATGGCATTAGCGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAA
* * * * *
73129164 TGTAAGACCATGTCTAGTACATGTCATCGGCTTTGATATATGTGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAA
*
73129212 TGTAATACCATGTCTGGGACATGGCATCGGC
1 TGTAAGACCATGTCTGGGACATGGCATCGGC
73129243 ACCGATATGA
Statistics
Matches: 148, Mismatches: 27, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
48 121 0.82
49 27 0.18
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAA
Found at i:73129266 original size:96 final size:95
Alignment explanation
Indices: 73129019--73129270 Score: 265
Period size: 96 Copynumber: 2.6 Consensus size: 95
73129009 TGAGATCCCG
* * * * * *
73129019 TGTAAGACCATGTCTGGGTCATGGTATCGGCAACCGAGATGAGAGCC-AATGCAAGACCATGTTT
1 TGTAAGACCATGTCTGGGACATGGCATCGGC-ACCGATATGAGATCCGTAT--AAGACCATGTCT
* *
73129083 GGGACATGGCATCGGCGTTGATATGTGTGCCAA
63 AGGACATGGCATCGGCGTTGATATATGTGCCAA
** *** * *
73129116 TGTAAGACCATGTCTGGGACATGGCATTAGCGTTGATATGTG-TGCCAGTGTAAGACCATGTCTA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGAGAT-CC-GTATAAGACCATGTCTA
* * *
73129180 GTACATGTCATCGGCTTTGATATATGTGCCAA
64 GGACATGGCATCGGCGTTGATATATGTGCCAA
*
73129212 TGTAATACCATGTCTGGGACATGGCATCGGCACCGATATGAGACTCCGTATAAGACCAT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGAGA-TCCGTATAAGACCAT
73129271 ATTTGGGATA
Statistics
Matches: 124, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
96 93 0.75
97 29 0.23
98 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (95 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGAGATCCGTATAAGACCATGTCTAGG
ACATGGCATCGGCGTTGATATATGTGCCAA
Found at i:73135247 original size:29 final size:30
Alignment explanation
Indices: 73135195--73135251 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
73135185 TTTGATAAAA
73135195 CTAAGGGCAAAATCGTAATTTTTGTAAAGT
1 CTAAGGGCAAAATCGTAATTTTTGTAAAGT
* * *
73135225 CTAAGGGTAAAATGGTCA-TTTTGTAAA
1 CTAAGGGCAAAATCGTAATTTTTGTAAA
73135252 ATTGTGAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.33
Consensus pattern (30 bp):
CTAAGGGCAAAATCGTAATTTTTGTAAAGT
Found at i:73135941 original size:49 final size:49
Alignment explanation
Indices: 73135885--73136007 Score: 149
Period size: 49 Copynumber: 2.5 Consensus size: 49
73135875 TATTGTGTGT
* * * *
73135885 CAGTGTAAGTCCTGTCTGGGACATGGTATTGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGTATCGAC-CTCAATAGATGAAAGC
* * * *
73135934 CAGTGTAAGACCTGTCTAGGACACGGTATCGGCCTCAATAGATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGTATCGACCTCAATAGATGAAAGC
*
73135983 CAGTGTAAGACCTGTTTGGGACATG
1 CAGTGTAAGACCTGTCTGGGACATG
73136008 CCATCGACAT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 61 0.98
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGTATCGACCTCAATAGATGAAAGC
Found at i:73140473 original size:57 final size:57
Alignment explanation
Indices: 73140385--73140519 Score: 245
Period size: 57 Copynumber: 2.4 Consensus size: 57
73140375 ATTGTATAAC
* *
73140385 AGGATTACCAGTCTAGGATAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
73140442 AGGATTACCAGTCCAGGCTAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
73140499 AGGA-TACCAGTCCAGGCTAAA
1 AGGATTACCAGTCCAGGCTAAA
73140520 CCCTAATCAT
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
56 17 0.22
57 59 0.78
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
Found at i:73140546 original size:57 final size:57
Alignment explanation
Indices: 73140385--73140546 Score: 220
Period size: 57 Copynumber: 2.8 Consensus size: 57
73140375 ATTGTATAAC
* * * *
73140385 AGGATTACCAGTCTAGGATAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCCTAATATAACGTAAGCTCAGAGGAGCTCAATT
* *
73140442 AGGATTACCAGTCCAGGCTAAATCCTTTATATAACGTAAGCTCAGAGGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCCTAATATAACGTAAGCTCAGAGGAGCTCAATT
* *
73140499 AGGA-TACCAGTCCAGGCTAAA-CCCTAATCATAACATATGCTCGAGAGG
1 AGGATTACCAGTCCAGGCTAAATCCCTAAT-ATAACGTAAGCTC-AGAGG
73140547 TATTATCAGG
Statistics
Matches: 97, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
55 5 0.05
56 28 0.29
57 64 0.66
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.25
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCCTAATATAACGTAAGCTCAGAGGAGCTCAATT
Found at i:73142691 original size:34 final size:34
Alignment explanation
Indices: 73142648--73142715 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
73142638 CCCTACCAAT
*
73142648 TTGATTTTATTCCCTTATTTTAGATTAAGCTACA
1 TTGATTTTATTCCCTTATTTAAGATTAAGCTACA
73142682 TTGATTTTATTCCCTTATTTAAGATTAAGCTACA
1 TTGATTTTATTCCCTTATTTAAGATTAAGCTACA
73142716 ATCATCAAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.28, C:0.15, G:0.09, T:0.49
Consensus pattern (34 bp):
TTGATTTTATTCCCTTATTTAAGATTAAGCTACA
Found at i:73142996 original size:9 final size:9
Alignment explanation
Indices: 73142982--73143011 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
73142972 ACATATGCTC
73142982 TCTCTTTTT
1 TCTCTTTTT
73142991 TCTCTTTTT
1 TCTCTTTTT
*
73143000 TTTCTTTTT
1 TCTCTTTTT
73143009 TCT
1 TCT
73143012 ATTTATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
TCTCTTTTT
Found at i:73143007 original size:18 final size:19
Alignment explanation
Indices: 73142984--73143021 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
73142974 ATATGCTCTC
*
73142984 TCTTTTTTCTCTTT-TTTT
1 TCTTTTTTCTATTTATTTT
73143002 TCTTTTTTCTATTTATTTT
1 TCTTTTTTCTATTTATTTT
73143021 T
1 T
73143022 AACGAGCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (19 bp):
TCTTTTTTCTATTTATTTT
Found at i:73147334 original size:23 final size:23
Alignment explanation
Indices: 73147304--73147350 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
73147294 CTCAGTGCTA
73147304 TGATTCTGCCACAGCACCTTCAG
1 TGATTCTGCCACAGCACCTTCAG
73147327 TGATTCTGCCACAGCACCTTCAG
1 TGATTCTGCCACAGCACCTTCAG
73147350 T
1 T
73147351 AATGGAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.34, G:0.17, T:0.28
Consensus pattern (23 bp):
TGATTCTGCCACAGCACCTTCAG
Found at i:73151324 original size:29 final size:29
Alignment explanation
Indices: 73151279--73151336 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
73151269 TAGAGAAAAC
*
73151279 TGGATTTTAATCTTGCTTATCAATAATAA
1 TGGATTTTAATCGTGCTTATCAATAATAA
*
73151308 TGGATTTTAATCGTGCTTATCAGTAATAA
1 TGGATTTTAATCGTGCTTATCAATAATAA
73151337 AACCATTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (29 bp):
TGGATTTTAATCGTGCTTATCAATAATAA
Found at i:73153862 original size:48 final size:48
Alignment explanation
Indices: 73153790--73154218 Score: 427
Period size: 48 Copynumber: 8.6 Consensus size: 48
73153780 CAAAAAAGTA
* *
73153790 CCAATGCCATGTCCCCGACATGGTCTTACA-T-GAATCCACATATCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCATCG
* * *
73153838 TCAATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCA
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
* * *
73153886 CCGATGCCATGTCTCAGACATGGTCTTACATTGGCACACATATCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
* * *
73153934 CCGATGCCATGTCCCCGACATGGTCTTACACTGGCACACATAT-ACTGGCA
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA-T--CG
* * *
73153984 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCATC-
1 C-C--A--AT-GCC-ATG---TC--CCAGACATGGTCTTACACTGGCACACATATCATCG
*
73154043 ACAGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
1 CCA-ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
* * * * *
73154092 CCGATGCCATATCCCAGGCATAGTCTTACACTGGCACAGATATCATCG
1 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
** *
73154140 CTGATGCCATGTCCC-GAACATGGTCTTACACTAGCACACATATCATCG
1 CCAATGCCATGTCCCAG-ACATGGTCTTACACTGGCACACATATCATCG
* *
73154188 CCGATGCCATGTCCCTGACATGGTCTTACAC
1 CCAATGCCATGTCCCAGACATGGTCTTACAC
73154219 AAGCACATTT
Statistics
Matches: 322, Mismatches: 38, Indels: 42
0.80 0.09 0.10
Matches are distributed among these distances:
47 2 0.01
48 262 0.81
49 3 0.01
50 5 0.02
51 1 0.00
53 3 0.01
54 3 0.01
55 4 0.01
56 4 0.01
57 3 0.01
58 1 0.00
60 2 0.01
62 28 0.09
63 1 0.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (48 bp):
CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG
Found at i:73153957 original size:96 final size:96
Alignment explanation
Indices: 73153793--73154218 Score: 489
Period size: 96 Copynumber: 4.3 Consensus size: 96
73153783 AAAAGTACCA
* * * * *
73153793 ATGCCATGTCCCCGACATGGTCTTACA-T-GAATCCACATATCATCGTCAATGCCATGTCCTAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCATCGCCGATGCCATGTCCCAGA
73153856 CATGGTCTTACACTGGCACACATATCATCACCG
64 CATGGTCTTACACTGGCACACATATCATCACCG
* * *
73153889 ATGCCATGTCTCAGACATGGTCTTACATTGGCACACATATCATCGCCGATGCCATGTCCCCGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAGACA
73153954 TGGTCTTACACTGGCACACATATACTGGCACACATATCATCGCCG
66 TGGTCTTACACTGGCACAC--ATA-T------C--ATCA---CCG
* * * *
73153999 ATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCATCACAGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAGACA
*
73154064 TGGTCTTACACTGGCACACATATCATCGCCG
66 TGGTCTTACACTGGCACACATATCATCACCG
* * * * *
73154095 ATGCCATATCCCAGGCATAGTCTTACACTGGCACAGATATCATCGCTGATGCCATGTCCC-GAAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAG-AC
* *
73154159 ATGGTCTTACACTAGCACACATATCATCGCCG
65 ATGGTCTTACACTGGCACACATATCATCACCG
*
73154191 ATGCCATGTCCCTGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
73154219 AAGCACATTT
Statistics
Matches: 285, Mismatches: 28, Indels: 34
0.82 0.08 0.10
Matches are distributed among these distances:
95 1 0.00
96 184 0.65
97 1 0.00
98 5 0.02
99 4 0.01
101 1 0.00
105 1 0.00
107 5 0.02
108 3 0.01
110 80 0.28
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCCGATGCCATGTCCCAGACA
TGGTCTTACACTGGCACACATATCATCACCG
Found at i:73153982 original size:14 final size:14
Alignment explanation
Indices: 73153963--73153990 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73153953 ATGGTCTTAC
73153963 ACTGGCACACATAT
1 ACTGGCACACATAT
73153977 ACTGGCACACATAT
1 ACTGGCACACATAT
73153991 CATCGCCGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (14 bp):
ACTGGCACACATAT
Found at i:73154016 original size:62 final size:62
Alignment explanation
Indices: 73153917--73154038 Score: 217
Period size: 62 Copynumber: 2.0 Consensus size: 62
73153907 GGTCTTACAT
* * *
73153917 TGGCACACATATCATCGCCGATGCCATGTCCCCGACATGGTCTTACACTGGCACACATATAC
1 TGGCACACATATCATCGCCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATAC
73153979 TGGCACACATATCATCGCCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATAT
1 TGGCACACATATCATCGCCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATAT
73154039 CATCACAGAT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.27, C:0.34, G:0.17, T:0.22
Consensus pattern (62 bp):
TGGCACACATATCATCGCCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATAC
Found at i:73154064 original size:110 final size:110
Alignment explanation
Indices: 73153867--73154086 Score: 368
Period size: 110 Copynumber: 2.0 Consensus size: 110
73153857 ATGGTCTTAC
* * * *
73153867 ACTGGCACACATATCATCACCGATGCCATGTCTCAGACATGGTCTTACATTGGCACACATATCAT
1 ACTGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCAT
* * *
73153932 CGCCGATGCCATGTCCCCGACATGGTCTTACACTGGCACACATAT
66 CACAGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATAT
*
73153977 ACTGGCACACATATCATCGCCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCAT
1 ACTGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCAT
73154042 CACAGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATAT
66 CACAGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATAT
73154087 CATCGCCGAT
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
110 102 1.00
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.23
Consensus pattern (110 bp):
ACTGGCACACATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACTAGCACACATATCAT
CACAGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATAT
Found at i:73154148 original size:206 final size:205
Alignment explanation
Indices: 73153793--73154182 Score: 588
Period size: 206 Copynumber: 1.9 Consensus size: 205
73153783 AAAAGTACCA
* * * *
73153793 ATGCCATGTCCCCGACATGGTCTTACATGAATCCACATATCATCGTCAATGCCATGTCCTAGACA
1 ATGCCATGTCCCAGACATGGTCTCACATGAA-CCACATATCATCGACAATGCCATGTCCCAGACA
* * * *
73153858 TGGTCTTACACTGGCACACATATCATCACCGATGCCATGTCTCAGACATGGTCTTACATTGGCAC
65 TGGTCTTACACTGGCACACATATCATCACCGATGCCATATCCCAGACATAGTCTTACACTGGCAC
*
73153923 ACATATCATCGCCGATGCCATGTCCCCG-ACATGGTCTTACACTGGCACACATATACTGGCACAC
130 ACATATCATCGCCGATGCCATGT-CCCGAACATGGTCTTACACTAGCACACATATACTGGCACAC
73153987 ATATCATCGCCG
194 ATATCATCGCCG
*
73153999 ATGCCATGTCCCAGACATGGTCTCACACT-AGCACACATATCATC-ACAGATGCCATGTCCCAGA
1 ATGCCATGTCCCAGACATGGTCTCACA-TGAAC-CACATATCATCGACA-ATGCCATGTCCCAGA
* *
73154062 CATGGTCTTACACTGGCACACATATCATCGCCGATGCCATATCCCAGGCATAGTCTTACACTGGC
63 CATGGTCTTACACTGGCACACATATCATCACCGATGCCATATCCCAGACATAGTCTTACACTGGC
* *
73154127 ACAGATATCATCGCTGATGCCATGTCCCGAACATGGTCTTACACTAGCACACATAT
128 ACACATATCATCGCCGATGCCATGTCCCGAACATGGTCTTACACTAGCACACATAT
73154183 CATCGCCGAT
Statistics
Matches: 166, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
205 7 0.04
206 158 0.95
207 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (205 bp):
ATGCCATGTCCCAGACATGGTCTCACATGAACCACATATCATCGACAATGCCATGTCCCAGACAT
GGTCTTACACTGGCACACATATCATCACCGATGCCATATCCCAGACATAGTCTTACACTGGCACA
CATATCATCGCCGATGCCATGTCCCGAACATGGTCTTACACTAGCACACATATACTGGCACACAT
ATCATCGCCG
Found at i:73158329 original size:26 final size:25
Alignment explanation
Indices: 73158284--73158354 Score: 97
Period size: 26 Copynumber: 2.8 Consensus size: 25
73158274 GAGGAAGTGC
*
73158284 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCA
* *
73158309 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGC-TTTGCCCTAGTTTACCA
*
73158335 AAAAAGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCTAGTT
73158355 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 19 0.47
26 21 0.52
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCA
Found at i:73158620 original size:31 final size:31
Alignment explanation
Indices: 73158578--73158657 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
73158568 TACAGTAAAG
73158578 GCTTCGACCCAGTGATATGAATAATGAAAAA
1 GCTTCGACCCAGTGATATGAATAATGAAAAA
* *
73158609 GCTTCGGCCCAGTGATATGAATAATGTAAAA
1 GCTTCGACCCAGTGATATGAATAATGAAAAA
73158640 GCTTCGACCCAGT-ATATG
1 GCTTCGACCCAGTGATATG
73158658 CTGAGATTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 5 0.11
31 41 0.89
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (31 bp):
GCTTCGACCCAGTGATATGAATAATGAAAAA
Done.