Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 224 of 325
Found at i:73167153 original size:39 final size:39
Alignment explanation
Indices: 73166940--73167136 Score: 322
Period size: 39 Copynumber: 5.1 Consensus size: 39
73166930 TGTGAATATA
* * *
73166940 TATATGCGAGAATTTTATCTGGACTTCAGGTCCGCAGCC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
73166979 TATAAGTGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
73167018 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
73167057 TATATGCGAGAATTATATCCGGACTTCATGTCCACAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
73167096 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
73167135 TA
1 TA
73167137 CGTGTTGGAC
Statistics
Matches: 146, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 146 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:73172191 original size:39 final size:39
Alignment explanation
Indices: 73172148--73172298 Score: 223
Period size: 39 Copynumber: 3.9 Consensus size: 39
73172138 GTCCAGCACG
* *
73172148 TAGCCTGCAGACCTAAAGTCTGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
* *
73172187 TAGCCTGCGGACATGAAGTCCGGATATAATTCTCGCATA
1 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
* *
73172226 TAGCCTGCGGACC-AGAAATCCGGATATAATTCTCGCTTA
1 TAGCCTGCGGACCTA-AAGTCCGGATATAATTCTCGCATA
*
73172265 TAGCCTGCGGACCTGAAGTCCGGATATAATTCTC
1 TAGCCTGCGGACCTAAAGTCCGGATATAATTCTC
73172299 ACGTATATAT
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
39 100 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (39 bp):
TAGCCTGCGGACCTAAAGTCCGGATATAATTCTCGCATA
Found at i:73178688 original size:39 final size:39
Alignment explanation
Indices: 73178514--73178671 Score: 271
Period size: 39 Copynumber: 4.1 Consensus size: 39
73178504 TGTGAATATA
*
73178514 TATATGCAAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
73178553 TATAAGCGAGAATTATATCCGGACTTCAAGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
73178592 TATATGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
73178631 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
73178670 TA
1 TA
73178672 CGTGTTGGAC
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:73179340 original size:18 final size:18
Alignment explanation
Indices: 73179317--73179351 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
73179307 AGGGCTGACC
73179317 AAGTATCTTTTGGTAATT
1 AAGTATCTTTTGGTAATT
73179335 AAGTATCTTTTGGTAAT
1 AAGTATCTTTTGGTAAT
73179352 GTATATTCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.17, T:0.49
Consensus pattern (18 bp):
AAGTATCTTTTGGTAATT
Found at i:73180483 original size:12 final size:12
Alignment explanation
Indices: 73180468--73180533 Score: 62
Period size: 12 Copynumber: 5.4 Consensus size: 12
73180458 TATCAGAACT
*
73180468 AGAATCAAAATG
1 AGAATCAAAATC
73180480 AGAATCAAAATC
1 AGAATCAAAATC
* **
73180492 AGAAT-TAGGTGAC
1 AGAATCAAAAT--C
73180505 AGAATCAAAATC
1 AGAATCAAAATC
*
73180517 AGAATCAGAATC
1 AGAATCAAAATC
73180529 AGAAT
1 AGAAT
73180534 TAGGTGACAG
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
11 2 0.05
12 33 0.77
13 6 0.14
14 2 0.05
ACGTcount: A:0.53, C:0.12, G:0.17, T:0.18
Consensus pattern (12 bp):
AGAATCAAAATC
Found at i:73180509 original size:37 final size:37
Alignment explanation
Indices: 73180468--73180567 Score: 155
Period size: 37 Copynumber: 2.7 Consensus size: 37
73180458 TATCAGAACT
*
73180468 AGAATCAAAATGAGAATCAAAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAAAATCAGAATTAGGTGAC
*
73180505 AGAATCAAAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAAAATCAGAATTAGGTGAC
* * *
73180542 AGAATTAGAATCAGAATCAATATCAG
1 AGAATCAAAATCAGAATCAAAATCAG
73180568 GTAACAGAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAAAATCAGAATTAGGTGAC
Found at i:73180522 original size:6 final size:6
Alignment explanation
Indices: 73180504--73180589 Score: 61
Period size: 6 Copynumber: 14.0 Consensus size: 6
73180494 AATTAGGTGA
* * * *
73180504 CAGAAT CAAAAT CAGAAT CAGAAT CAGAAT TAG-GT GACAGAAT TAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT CAGAAT --CAGAAT CAGAAT
*
73180553 CAGAAT CA-ATAT CAGGTAA- CAGAAT CAAAAT CAGAAT
1 CAGAAT CAGA-AT CA-G-AAT CAGAAT CAGAAT CAGAAT
73180590 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 10, Indels: 16
0.70 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 51 0.82
7 4 0.06
8 2 0.03
9 1 0.02
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
CAGAAT
Found at i:73180523 original size:31 final size:31
Alignment explanation
Indices: 73180482--73180589 Score: 101
Period size: 31 Copynumber: 3.3 Consensus size: 31
73180472 TCAAAATGAG
*
73180482 AATCAAAATCAGAATTAGGTGACAGAATCAAAATCA
1 AATCAGAATCAGAATTAGGTGACAGAATC---A--A
* *
73180518 GAATCAGAATCAGAATTAGGTGACAGAATTAG
1 -AATCAGAATCAGAATTAGGTGACAGAATCAA
* *
73180550 AATCAGAATCA-ATATCAGGTAACAGAATCAA
1 AATCAGAATCAGA-ATTAGGTGACAGAATCAA
73180581 AATCAGAAT
1 AATCAGAAT
73180590 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
30 1 0.02
31 34 0.54
34 1 0.02
37 27 0.43
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (31 bp):
AATCAGAATCAGAATTAGGTGACAGAATCAA
Found at i:73180589 original size:37 final size:37
Alignment explanation
Indices: 73180468--73180589 Score: 132
Period size: 37 Copynumber: 3.5 Consensus size: 37
73180458 TATCAGAACT
* * * *
73180468 AGAATCAAAATGAGAATCAAAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
* *
73180505 AGAATCAAAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
73180542 AGAAT-----T-AGAATCAGAATCA-ATATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGA-ATCAGGTAAC
73180573 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
73180590 GTGAATGCAA
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
30 1 0.01
31 26 0.35
32 1 0.01
36 1 0.01
37 45 0.61
ACGTcount: A:0.51, C:0.12, G:0.17, T:0.20
Consensus pattern (37 bp):
AGAATCAAAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:73180756 original size:27 final size:26
Alignment explanation
Indices: 73180708--73180767 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
73180698 GCGAGGCTGC
*
73180708 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
73180735 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
73180761 CAGATAT
1 CAGATAT
73180768 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:73183673 original size:6 final size:6
Alignment explanation
Indices: 73183638--73183768 Score: 81
Period size: 6 Copynumber: 21.3 Consensus size: 6
73183628 AAGAAACATT
* * * *
73183638 ATCAGA A-CTAGA ATCAAA ATGAGG ATCAGA ATCAGA ATCAGGTG AT-AGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * * *
73183687 ATCAAA ATCAGA ATCAGA ATCAGA ATTAGGTG AT-AGA ATTAGA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA
* *
73183736 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
73183769 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 18, Indels: 22
0.71 0.13 0.16
Matches are distributed among these distances:
5 7 0.07
6 76 0.79
7 8 0.08
8 5 0.05
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:73183687 original size:37 final size:37
Alignment explanation
Indices: 73183646--73183768 Score: 150
Period size: 37 Copynumber: 3.5 Consensus size: 37
73183636 TTATCAGAAC
* *
73183646 TAGAATCAAAATGAGGATCAGAATCAGAATCAGGTGA
1 TAGAATCAAAATCAGAATCAGAATCAGAATCAGGTGA
*
73183683 TAGAATCAAAATCAGAATCAGAATCAGAATTAGGTGA
1 TAGAATCAAAATCAGAATCAGAATCAGAATCAGGTGA
* *
73183720 TAGAAT-----T-AGAATCAGAATCAGTATCAGGTAA
1 TAGAATCAAAATCAGAATCAGAATCAGAATCAGGTGA
*
73183751 CAGAATCAAAATCAGAAT
1 TAGAATCAAAATCAGAAT
73183769 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
31 26 0.36
32 1 0.01
36 1 0.01
37 45 0.62
ACGTcount: A:0.48, C:0.11, G:0.20, T:0.21
Consensus pattern (37 bp):
TAGAATCAAAATCAGAATCAGAATCAGAATCAGGTGA
Found at i:73183699 original size:31 final size:31
Alignment explanation
Indices: 73183662--73183768 Score: 115
Period size: 31 Copynumber: 3.3 Consensus size: 31
73183652 CAAAATGAGG
73183662 ATCAGAATCAGAATCAGGTGATAGAATCAAA
1 ATCAGAATCAGAATCAGGTGATAGAATCAAA
* *
73183693 ATCAGAATCAGAATCAGAATTAGGTGATAGAATTAGA
1 ATCAGAATCAGAATC------AGGTGATAGAATCAAA
* * *
73183730 ATCAGAATCAGTATCAGGTAACAGAATCAAA
1 ATCAGAATCAGAATCAGGTGATAGAATCAAA
73183761 ATCAGAAT
1 ATCAGAAT
73183769 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
31 35 0.56
37 28 0.44
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGGTGATAGAATCAAA
Found at i:73184620 original size:27 final size:27
Alignment explanation
Indices: 73184564--73184671 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 27
73184554 GGGGCAAAAT
* *
73184564 AGTAATTTTACCC-AC-GAGGGTATCTC
1 AGTAATTCTACCCTACAG-GGGTATTTC
*
73184590 AGTAATTCTACCCTACAGGGGTATTTT
1 AGTAATTCTACCCTACAGGGGTATTTC
*
73184617 AGTAATTCTACCCTATAGGGGTATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
* * * *
73184644 GGTAATTCTACCTTACAAGGGCATTTC
1 AGTAATTCTACCCTACAGGGGTATTTC
73184671 A
1 A
73184672 AAAATTTTAC
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
26 12 0.17
27 56 0.81
28 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (27 bp):
AGTAATTCTACCCTACAGGGGTATTTC
Found at i:73184696 original size:27 final size:27
Alignment explanation
Indices: 73184666--73184723 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
73184656 TTACAAGGGC
*
73184666 ATTTCAAAAATTTTACAAATTAGGGGT
1 ATTTCAAAAATTTTACAAACTAGGGGT
****
73184693 ATTTTGGTAATTTTACAAACTAGGGGT
1 ATTTCAAAAATTTTACAAACTAGGGGT
73184720 ATTT
1 ATTT
73184724 TGGTAATTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.41
Consensus pattern (27 bp):
ATTTCAAAAATTTTACAAACTAGGGGT
Found at i:73184724 original size:27 final size:26
Alignment explanation
Indices: 73184674--73184759 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 26
73184664 GCATTTCAAA
73184674 AATTTTACAAATTAGGGGTATTTTGGT
1 AATTTTACAAA-TAGGGGTATTTTGGT
73184701 AATTTTACAAACTAGGGGTATTTTGGT
1 AATTTTACAAA-TAGGGGTATTTTGGT
* * * *
73184728 AATTTTTCTAATCGAGGGTATTTTTGT
1 AATTTTACAAATAG-GGGTATTTTGGT
73184755 AATTT
1 AATTT
73184760 GGTAAACTAA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
26 2 0.04
27 51 0.96
ACGTcount: A:0.28, C:0.06, G:0.20, T:0.47
Consensus pattern (26 bp):
AATTTTACAAATAGGGGTATTTTGGT
Found at i:73192356 original size:40 final size:40
Alignment explanation
Indices: 73192312--73192539 Score: 379
Period size: 40 Copynumber: 5.7 Consensus size: 40
73192302 GCTACTTGCT
73192312 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
73192352 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
73192392 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
73192432 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
73192472 CAAATGCCTTCGAG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
73192511 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
73192540 CATCCGAATA
Statistics
Matches: 176, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 33 0.19
40 141 0.80
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:73194856 original size:15 final size:15
Alignment explanation
Indices: 73194836--73194864 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73194826 TTAATCAAAT
73194836 TCAACTCCGAAATTC
1 TCAACTCCGAAATTC
73194851 TCAACTCCGAAATT
1 TCAACTCCGAAATT
73194865 TTACTTTACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.31, G:0.07, T:0.28
Consensus pattern (15 bp):
TCAACTCCGAAATTC
Found at i:73200461 original size:39 final size:40
Alignment explanation
Indices: 73200417--73200659 Score: 288
Period size: 39 Copynumber: 6.2 Consensus size: 40
73200407 ACCTTCGAAT
* *
73200417 TTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGAC
* * *
73200456 TTAGCCC-GTTATAGTAACTCG-ACAAATGCCTTCGAGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
*
73200494 TTAG-CCGGTTATAGTAACT--CACACAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACA-AATGCCTTCGGGAC
* * *
73200532 TTAGCCCGGTTATAGTAACTCGTACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
73200572 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
73200611 TTAGCCCAGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGAC
*
73200651 TTACCCCGG
1 TTAGCCCGG
73200660 TTATCATCCG
Statistics
Matches: 181, Mismatches: 13, Indels: 19
0.85 0.06 0.09
Matches are distributed among these distances:
37 5 0.03
38 50 0.28
39 64 0.35
40 59 0.33
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:73200482 original size:38 final size:40
Alignment explanation
Indices: 73200440--73200663 Score: 307
Period size: 40 Copynumber: 5.7 Consensus size: 40
73200430 GCTACTTGCT
73200440 CAAATGCCTTCGGGACTTAGCCC-GTTATAGTAACTCG-A
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
73200478 CAAATGCCTTCGAGACTTAG-CCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
73200517 C-AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
73200556 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
73200596 CAAATGCCTTCGGG-CTTAGCCCAG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
73200635 CAAATGCCTTCGGGACTTACCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
73200664 CATCCGAATA
Statistics
Matches: 165, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
37 2 0.01
38 50 0.30
39 54 0.33
40 58 0.35
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:73200616 original size:79 final size:76
Alignment explanation
Indices: 73200417--73200653 Score: 302
Period size: 79 Copynumber: 3.0 Consensus size: 76
73200407 ACCTTCGAAT
*
73200417 TTAGCCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGTTATAGTAACTCGACAA
1 TTAGCCGGATATAG-TAAC-TGCACAAATGCCTTCGGGACTTAGCCCGTTATAGTAACTCGACAA
*
73200481 ATGCCTTCGAGAC
64 ATGCCTTCGGGAC
*
73200494 TTAGCCGGTTATAGTAACT-CACACAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTACA
1 TTAGCCGGATATAGTAACTGCACA-AATGCCTTCGGGACTTAGCCC-GTTATAGTAACTCG-ACA
73200558 AATGCCTTCGGGAC
63 AATGCCTTCGGGAC
* * *
73200572 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGG-CTTAGCCCAG-AATTAGTCACTAGCA
1 TTAG-CCGGATATAGTAACT-GCACAAATGCCTTCGGGACTTAGCCC-GTTA-TAGTAACTCG-A
73200635 CAAATGCCTTCGGGAC
61 CAAATGCCTTCGGGAC
73200651 TTA
1 TTA
73200654 CCCCGGTTAT
Statistics
Matches: 143, Mismatches: 9, Indels: 14
0.86 0.05 0.08
Matches are distributed among these distances:
75 3 0.02
76 23 0.16
77 29 0.20
78 21 0.15
79 51 0.36
80 12 0.08
81 4 0.03
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (76 bp):
TTAGCCGGATATAGTAACTGCACAAATGCCTTCGGGACTTAGCCCGTTATAGTAACTCGACAAAT
GCCTTCGGGAC
Found at i:73202969 original size:21 final size:21
Alignment explanation
Indices: 73202943--73202985 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
73202933 GCATCTTTAA
*
73202943 TCAAATCAACTCTGAAAATTT
1 TCAAATCAACTCCGAAAATTT
73202964 TCAAATCAACTCCGAAAATTT
1 TCAAATCAACTCCGAAAATTT
73202985 T
1 T
73202986 ACTTTCACTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.33
Consensus pattern (21 bp):
TCAAATCAACTCCGAAAATTT
Found at i:73215310 original size:16 final size:14
Alignment explanation
Indices: 73215280--73215327 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 14
73215270 AAAAAAATTT
73215280 AAAAAGAAA-GAAA
1 AAAAAGAAATGAAA
73215293 AAAATGAGAAATGAAA
1 AAAA--AGAAATGAAA
73215309 AAAAAGAAACTGAAA
1 AAAAAGAAA-TGAAA
73215324 AAAA
1 AAAA
73215328 CATTTTTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.13
14 5 0.16
15 14 0.45
16 8 0.26
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (14 bp):
AAAAAGAAATGAAA
Found at i:73220294 original size:64 final size:64
Alignment explanation
Indices: 73220218--73220401 Score: 180
Period size: 67 Copynumber: 2.8 Consensus size: 64
73220208 AGACATTATG
* * * *
73220218 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGTTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
73220282 ATGTAGCTAGGTCGCATGCGTGGT-TTCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGTGGTACT-A--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
73220346 TAA
62 TAA
* *
73220349 ACTG--GCTAGGTCACATGGGTGGTACT-TAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAT-GTGTACACCATGTAG-ACAAGAGAGC
73220402 CAAAATTATG
Statistics
Matches: 98, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
62 1 0.01
63 21 0.21
64 24 0.24
66 19 0.19
67 31 0.32
68 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:73228968 original size:29 final size:29
Alignment explanation
Indices: 73228933--73229006 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
73228923 GTTGTGAGAT
* *
73228933 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
73228962 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
73228991 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73229007 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:73231510 original size:47 final size:48
Alignment explanation
Indices: 73231441--73231658 Score: 211
Period size: 47 Copynumber: 4.6 Consensus size: 48
73231431 GGTAAGGTGC
73231441 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAT-ATCTC-AAGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGC-CATCATCTCGAAGT
* * * *
73231488 CGATGCCATGTCCCAAATATGGTCTTACACTGACCATCATCTCGTAGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCCATCATCTCGAAGT
* * * * *
73231536 CAATG-CATGTCCCAAACAT-GTCTTACATTGGCTAACATCTCGAGGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCCATCATCTCGAAGT
* * * *
73231582 TGATG-CATGTCTCAGACAT-GTCTTACACTAG-CAGTCATCTC--AGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCCA-TCATCTCGAAGT
*
73231626 GCCGATGCCATGTCCCAGACATGGTCTTACACT
1 --CGATGCCATGTCCCAAACATGGTCTTACACT
73231659 AGCTTCCATA
Statistics
Matches: 140, Mismatches: 24, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
44 2 0.01
45 1 0.01
46 58 0.41
47 63 0.45
48 16 0.11
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCCATCATCTCGAAGT
Found at i:73231638 original size:93 final size:94
Alignment explanation
Indices: 73231437--73231658 Score: 274
Period size: 93 Copynumber: 2.4 Consensus size: 94
73231427 TATGGGTAAG
* *
73231437 GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCC
1 GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTAACATCTCAAGTCGATGCCATGTCCC
*
73231502 AAATATGGTCTTACACTGACCATCATCTC
66 AAACATGGTCTTACACTGACCATCATCTC
* * * *
73231531 GTAGCCAATG-CATGTCCCAAACAT-GTCTTACATTGGCTAACATCTCGAGGTTGATG-CATGTC
1 GT-GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTAACATCTC-AAGTCGATGCCATGTC
* * *
73231593 TCAGACAT-GTCTTACACT-AGCAGTCATCTC
64 CCAAACATGGTCTTACACTGACCA-TCATCTC
*
73231623 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACT
1 -GTGCCGATGCCATGTCCCAAACATGGTCTTACACT
73231659 AGCTTCCATA
Statistics
Matches: 109, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
91 3 0.03
92 23 0.21
93 45 0.41
94 32 0.29
95 6 0.06
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (94 bp):
GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTAACATCTCAAGTCGATGCCATGTCCC
AAACATGGTCTTACACTGACCATCATCTC
Found at i:73231685 original size:47 final size:46
Alignment explanation
Indices: 73231437--73231708 Score: 168
Period size: 47 Copynumber: 5.8 Consensus size: 46
73231427 TATGGGTAAG
* *
73231437 GTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGC--TCATATCTCAA
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCAGTCATA--TC-A
* * * *
73231486 GT--CGATGCCATGTCCCAAATATGGTCTTACACTGACCA-TCATCTC-
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACT-AGCAGTCATATCA
* * * * * *
73231531 GTAGCCAATGCATGTCCCAAACATGTCTTACATTGGCTA-ACATCTCGA
1 GT-GCCGATGCATGTCCCAGACATGTCTTACACTAGC-AGTCATATC-A
** * *
73231579 G-GTTGATGCATGTCTCAGACATGTCTTACACTAGCAGTCATCTCA
1 GTGCCGATGCATGTCCCAGACATGTCTTACACTAGCAGTCATATCA
* *
73231624 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TTCCATAAT-T
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCAGT-CAT-ATCA
*
73231672 TTGCCGATGCATGTCCCAGACATGTCTTACACTAGCA
1 GTGCCGATGCATGTCCCAGACATGTCTTACACTAGCA
73231709 CACACAAGTG
Statistics
Matches: 183, Mismatches: 25, Indels: 32
0.76 0.10 0.13
Matches are distributed among these distances:
45 6 0.03
46 67 0.37
47 73 0.40
48 30 0.16
49 7 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
GTGCCGATGCATGTCCCAGACATGTCTTACACTAGCAGTCATATCA
Found at i:73237843 original size:29 final size:29
Alignment explanation
Indices: 73237801--73237859 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
73237791 CCCAAAATAT
73237801 ACTTAGAAACCAATTCAGAATCAATCCTG
1 ACTTAGAAACCAATTCAGAATCAATCCTG
73237830 ACTTAGAAACCAATTCAGAATCAATCCTG
1 ACTTAGAAACCAATTCAGAATCAATCCTG
73237859 A
1 A
73237860 TCTCTTAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.24, G:0.10, T:0.24
Consensus pattern (29 bp):
ACTTAGAAACCAATTCAGAATCAATCCTG
Found at i:73239149 original size:47 final size:47
Alignment explanation
Indices: 73239078--73239341 Score: 206
Period size: 47 Copynumber: 5.6 Consensus size: 47
73239068 GGCAAGGTAC
73239078 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCAAGT
* *
73239125 CAATGCCATGTCCCAGACATGGTCTTACACTGGC-CATCATCTCGTAGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTC-AAGT
* * * * *
73239173 CGAT-ACATGTCCCAGACATG-CATAACACTGGCTTA-CATCTCGAGG
1 CGATGCCATGTCCCAGACATGTC-TTACACTGGCTCATCATCTCAAGT
* * * ** * *
73239218 CTAATG-CATATCCCAGACATGTCTTCCACCAGCTC-TCGTCTCAGTGT
1 C-GATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCA-AGT
* * * **
73239265 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTTCCATAAT-T-TTGT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGC-T-CATCATCTCAAGT
73239313 CGATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCCAGACATGTCTTACACT
73239342 AGCACACACA
Statistics
Matches: 175, Mismatches: 28, Indels: 29
0.75 0.12 0.12
Matches are distributed among these distances:
45 4 0.02
46 60 0.34
47 81 0.46
48 25 0.14
49 1 0.01
50 2 0.01
51 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCAAGT
Found at i:73239275 original size:93 final size:94
Alignment explanation
Indices: 73239078--73239295 Score: 223
Period size: 93 Copynumber: 2.3 Consensus size: 94
73239068 GGCAAGGTAC
* * * *
73239078 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCAATGCCATGTCCCAGAC
1 CGATGCCATGTCCCAGACAT-GTCTAACACTGGCTCACATCTCAAGGCAATGCCATATCCCAGAC
**
73239143 ATGGTCTTACACTGGCCATCATCTCGTAGT
65 ATGGTCTTACACCAGCCATCATCTCGTAGT
* * *
73239173 CGAT-ACATGTCCCAGACATG-CATAACACTGGCTTACATCTCGAGGCTAATG-CATATCCCAGA
1 CGATGCCATGTCCCAGACATGTC-TAACACTGGCTCACATCTCAAGGC-AATGCCATATCCCAGA
* *
73239235 CAT-GTCTTCCACCAGCTC-TCGTCTCAGT-GT
64 CATGGTCTTACACCAGC-CATCATCTC-GTAGT
* *
73239265 CGATGCCATGTCCCAAACATGGTCTTACACT
1 CGATGCCATGTCCCAGACAT-GTCTAACACT
73239296 AGCTTCCATA
Statistics
Matches: 102, Mismatches: 14, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
92 23 0.23
93 49 0.48
94 25 0.25
95 5 0.05
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGTCTAACACTGGCTCACATCTCAAGGCAATGCCATATCCCAGACA
TGGTCTTACACCAGCCATCATCTCGTAGT
Found at i:73240022 original size:12 final size:12
Alignment explanation
Indices: 73240005--73240029 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73239995 CAAAAATGTA
73240005 AAAATCATCAAG
1 AAAATCATCAAG
73240017 AAAATCATCAAG
1 AAAATCATCAAG
73240029 A
1 A
73240030 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:73244701 original size:13 final size:13
Alignment explanation
Indices: 73244679--73244711 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
73244669 AAGGGTTTGT
73244679 TTAT-TAAACTAA
1 TTATCTAAACTAA
73244691 TTATCTAAACTAA
1 TTATCTAAACTAA
*
73244704 TTAACTAA
1 TTATCTAA
73244712 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:73247658 original size:6 final size:6
Alignment explanation
Indices: 73247643--73247704 Score: 72
Period size: 6 Copynumber: 10.5 Consensus size: 6
73247633 AAGTGAAACG
* * * *
73247643 AAAAGA AAAATC AAAAGA AAAATA AAAATA AAAATA AAAATA AGAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
73247691 AAAA-A ATAATA AAA
1 AAAATA AAAATA AAA
73247705 TAGGAAGATT
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
5 4 0.09
6 42 0.91
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.13
Consensus pattern (6 bp):
AAAATA
Found at i:73256963 original size:7 final size:7
Alignment explanation
Indices: 73256953--73256992 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
73256943 ACTTCCGACT
73256953 TTTAGGG
1 TTTAGGG
73256960 TTTAGGG
1 TTTAGGG
73256967 TTTAGGG
1 TTTAGGG
73256974 TTTAGGG
1 TTTAGGG
73256981 TTTAGGG
1 TTTAGGG
73256988 TTTAG
1 TTTAG
73256993 AAGCATTCGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.15, C:0.00, G:0.40, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:73259072 original size:28 final size:28
Alignment explanation
Indices: 73259036--73259114 Score: 131
Period size: 28 Copynumber: 2.8 Consensus size: 28
73259026 GAATCATTCG
*
73259036 ATATTTCACATACTAAGTGCCATTCTCA
1 ATATTTCACACACTAAGTGCCATTCTCA
* *
73259064 ATATCTCACACACTATGTGCCATTCTCA
1 ATATTTCACACACTAAGTGCCATTCTCA
73259092 ATATTTCACACACTAAGTGCCAT
1 ATATTTCACACACTAAGTGCCAT
73259115 ATTTGATGTC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.33
Consensus pattern (28 bp):
ATATTTCACACACTAAGTGCCATTCTCA
Found at i:73259211 original size:40 final size:40
Alignment explanation
Indices: 73259145--73259231 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
73259135 GTGTTGTACA
*
73259145 TAGCCGAAGCTATCTCAAATCACACACTAAGTGCCAAATT
1 TAGCCGAAGCTATCTCAAACCACACACTAAGTGCCAAATT
* *
73259185 TAGCCGAAGCTATAC-CAAACCGCACACTAAGTGCCATATT
1 TAGCCGAAGCTAT-CTCAAACCACACACTAAGTGCCAAATT
73259225 TAGCCGA
1 TAGCCGA
73259232 TATGTCATCA
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 42 0.98
41 1 0.02
ACGTcount: A:0.36, C:0.29, G:0.15, T:0.21
Consensus pattern (40 bp):
TAGCCGAAGCTATCTCAAACCACACACTAAGTGCCAAATT
Found at i:73262932 original size:34 final size:34
Alignment explanation
Indices: 73262894--73262962 Score: 122
Period size: 34 Copynumber: 2.0 Consensus size: 34
73262884 TTCTTATTCA
73262894 AGGGTA-CTCATTAGGGCATTTAATTAAGGAACAC
1 AGGGTACCT-ATTAGGGCATTTAATTAAGGAACAC
73262928 AGGGTACCTATTAGGGCATTTAATTAAGGAACAC
1 AGGGTACCTATTAGGGCATTTAATTAAGGAACAC
73262962 A
1 A
73262963 CTCTCGATCC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 32 0.94
35 2 0.06
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.26
Consensus pattern (34 bp):
AGGGTACCTATTAGGGCATTTAATTAAGGAACAC
Found at i:73272482 original size:43 final size:43
Alignment explanation
Indices: 73272421--73272505 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
73272411 ATTACATGTG
73272421 TCACAAATATCATGAACTCAGACCAACTCAATGAGCTCAGATA
1 TCACAAATATCATGAACTCAGACCAACTCAATGAGCTCAGATA
* *
73272464 TCACATATATCATGAACTCAGACCAACTCAATGAGTTCAGAT
1 TCACAAATATCATGAACTCAGACCAACTCAATGAGCTCAGAT
73272506 CATATAACTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.40, C:0.25, G:0.12, T:0.24
Consensus pattern (43 bp):
TCACAAATATCATGAACTCAGACCAACTCAATGAGCTCAGATA
Found at i:73280622 original size:47 final size:47
Alignment explanation
Indices: 73280563--73280685 Score: 201
Period size: 47 Copynumber: 2.6 Consensus size: 47
73280553 GGCATTAGCA
*
73280563 CTAAGACAAGGATACCATGTAAGATCATGTTTGGAACATGGCATTTG
1 CTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTG
*
73280610 GTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTG
1 CTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTG
* * *
73280657 CTAAGATAAGGATATCATATAAGACCATG
1 CTAAGACAAGGATACCATGTAAGACCATG
73280686 CCAAGGCATG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.26
Consensus pattern (47 bp):
CTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTG
Found at i:73280793 original size:55 final size:54
Alignment explanation
Indices: 73280664--73280860 Score: 218
Period size: 54 Copynumber: 3.6 Consensus size: 54
73280654 TTGCTAAGAT
* * * * *
73280664 AAGGATATCATATAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
* * *
73280718 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-A
* * * * *
73280774 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGCTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
* * *
73280826 AAGGATACCACGTAAGATCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
73280861 ATGGTAAGTT
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
52 4 0.03
53 31 0.26
54 41 0.34
55 41 0.34
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGA
Found at i:73287953 original size:93 final size:93
Alignment explanation
Indices: 73287844--73288015 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
73287834 CGCCCATAAG
* * *
73287844 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
73287909 ATGAGTTCGGATGCCTAGTTACATCTTA
66 ACGAGTTCGGATGCCTAGTTACATCTTA
*
73287937 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73288002 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73288016 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTTA
Found at i:73288012 original size:46 final size:46
Alignment explanation
Indices: 73287837--73288012 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
73287827 TGTAACCCGC
* * * *
73287837 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
73287883 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
73287933 -C-TTA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73287976 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73288013 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73288031 original size:46 final size:46
Alignment explanation
Indices: 73287845--73288031 Score: 136
Period size: 46 Copynumber: 4.0 Consensus size: 46
73287835 GCCCATAAGC
* * ** * *
73287845 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTC--GCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T-AGT
* * *
73287891 GAACTCGGACTCAACTCAATGAGTTCGGATGC-CTAGTTA-CATCTTA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCTAGT
* * * *
73287938 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCTAGT
73287984 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
73288030 GA
1 GA
73288032 CATGTCACTT
Statistics
Matches: 113, Mismatches: 15, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 61 0.54
47 30 0.27
48 1 0.01
49 5 0.04
50 5 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
Found at i:73291185 original size:77 final size:77
Alignment explanation
Indices: 73291094--73291254 Score: 245
Period size: 77 Copynumber: 2.1 Consensus size: 77
73291084 CTATTATCTA
* *
73291094 GCCCGGAGCCAAACCATCCGATATGCATGGCCCGAAG-ACAAATCAGTATAATACGCACCTGAAT
1 GCCCGAAGCCAAACCATCCGATATGCATGGCCAGAAGCA-AAATCAGTATAATACGCACCTG-AT
73291158 -TGATAATATCATG
64 GTGATAATATCATG
* *
73291171 GCCCGAAGCCAAACCATCCGATATGCATGGCCAGAAGCAAAATCGGTATAATACGTACCTGATGT
1 GCCCGAAGCCAAACCATCCGATATGCATGGCCAGAAGCAAAATCAGTATAATACGCACCTGATGT
*
73291236 GCTAATATCATG
66 GATAATATCATG
73291248 GCCCGAA
1 GCCCGAA
73291255 TCCCAATCAA
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
76 2 0.03
77 74 0.96
78 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.19
Consensus pattern (77 bp):
GCCCGAAGCCAAACCATCCGATATGCATGGCCAGAAGCAAAATCAGTATAATACGCACCTGATGT
GATAATATCATG
Found at i:73297469 original size:76 final size:77
Alignment explanation
Indices: 73297360--73297544 Score: 282
Period size: 76 Copynumber: 2.4 Consensus size: 77
73297350 GGTAACTTAT
* *
73297360 CCGAAGTACTATTATCATCGCCCGAAGCCAAACCACCCGATATGCATGGCCCGAAGCCAAATCGG
1 CCGAAGTGCTAATATCATCGCCCGAAGCCAAACCACCCGATATGCATGGCCCGAAGCCAAATCGG
73297425 TATAATACGCAC
66 TATAATACGCAC
* * * * *
73297437 CTGAAGTGCTAATATCAT-GCCTGAAGCCAAACCATCCGATATGCATGGCCTGAAGCCAAATTGG
1 CCGAAGTGCTAATATCATCGCCCGAAGCCAAACCACCCGATATGCATGGCCCGAAGCCAAATCGG
73297501 TATAATACGCAC
66 TATAATACGCAC
* *
73297513 CCAAAGTGCTAATATCATGGCCCGAAGCCAAA
1 CCGAAGTGCTAATATCATCGCCCGAAGCCAAA
73297545 TCAACGTATC
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
76 70 0.72
77 27 0.28
ACGTcount: A:0.34, C:0.29, G:0.19, T:0.19
Consensus pattern (77 bp):
CCGAAGTGCTAATATCATCGCCCGAAGCCAAACCACCCGATATGCATGGCCCGAAGCCAAATCGG
TATAATACGCAC
Found at i:73297799 original size:22 final size:22
Alignment explanation
Indices: 73297773--73297816 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
73297763 AAACGATGGA
73297773 ACGGATCGACTAGTCCGAAACT
1 ACGGATCGACTAGTCCGAAACT
73297795 ACGGATCGACTAGTCCGAAACT
1 ACGGATCGACTAGTCCGAAACT
73297817 TTGTTTTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.27, G:0.23, T:0.18
Consensus pattern (22 bp):
ACGGATCGACTAGTCCGAAACT
Found at i:73301517 original size:29 final size:29
Alignment explanation
Indices: 73301485--73301548 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
73301475 AAACTCATAC
73301485 TAGTCCAT-ATATTTCATTTATTTTT-C-ATT
1 TAGTCCATCA-ATTT-A-TTATTTTTCCAATT
*
73301514 TAGTCCTTCAATTTATTATTTTTCCAATT
1 TAGTCCATCAATTTATTATTTTTCCAATT
73301543 TAGTCC
1 TAGTCC
73301549 TATTAACTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
27 8 0.26
28 2 0.06
29 20 0.65
30 1 0.03
ACGTcount: A:0.23, C:0.17, G:0.05, T:0.55
Consensus pattern (29 bp):
TAGTCCATCAATTTATTATTTTTCCAATT
Found at i:73308205 original size:8 final size:8
Alignment explanation
Indices: 73308192--73308216 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
73308182 ACGCTACGAA
73308192 TCGACTAT
1 TCGACTAT
73308200 TCGACTAT
1 TCGACTAT
73308208 TCGACTAT
1 TCGACTAT
73308216 T
1 T
73308217 TTTTTTCCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (8 bp):
TCGACTAT
Found at i:73308500 original size:28 final size:30
Alignment explanation
Indices: 73308461--73308518 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 30
73308451 GTCCATATAT
*
73308461 TTTATTTATTTTACATTTTAGTCCT-TTAA
1 TTTATTTATTTTACAATTTAGTCCTATTAA
*
73308490 TTTA-TTATTTTGCAATTTAGTCCTATTAA
1 TTTATTTATTTTACAATTTAGTCCTATTAA
73308519 CTTAAAATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 18 0.69
29 8 0.31
ACGTcount: A:0.26, C:0.10, G:0.05, T:0.59
Consensus pattern (30 bp):
TTTATTTATTTTACAATTTAGTCCTATTAA
Found at i:73308624 original size:22 final size:22
Alignment explanation
Indices: 73308598--73308643 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
73308588 AACATCACAA
*
73308598 AACAC-AAATATTCATCAAGAAT
1 AACACAAAATATTCACCAA-AAT
73308620 AACACAAAATATTCACCAAAAT
1 AACACAAAATATTCACCAAAAT
73308642 AA
1 AA
73308644 AAAATTCAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.45
23 12 0.55
ACGTcount: A:0.59, C:0.20, G:0.02, T:0.20
Consensus pattern (22 bp):
AACACAAAATATTCACCAAAAT
Found at i:73313525 original size:28 final size:28
Alignment explanation
Indices: 73313488--73313620 Score: 176
Period size: 29 Copynumber: 4.6 Consensus size: 28
73313478 AACATATAGT
*
73313488 AACTCCGCACACTTAGTGTTATATAATCA
1 AACT-CGCACACTTAGTGCTATATAATCA
*
73313517 AACTCGCACACTTAGTGCTTACATAATCA
1 AACTCGCACACTTAGTGC-TATATAATCA
73313546 AACTCGCACACTTAGTGCTATATAATCA
1 AACTCGCACACTTAGTGCTATATAATCA
* ** *
73313574 AACTTGCACACTTAGTGCTATGCAATTTA
1 AACTCGCACACTTAGTGCTATATAA-TCA
*
73313603 AACCCGCACACTTAGTGC
1 AACTCGCACACTTAGTGC
73313621 CAATCTCATG
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
28 44 0.47
29 49 0.53
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
AACTCGCACACTTAGTGCTATATAATCA
Found at i:73313568 original size:57 final size:57
Alignment explanation
Indices: 73313488--73313620 Score: 187
Period size: 57 Copynumber: 2.3 Consensus size: 57
73313478 AACATATAGT
*
73313488 AACTCCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCA
1 AACT-CGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCA
* * * *
73313546 AACTCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTA
1 AACTCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCA
*
73313603 AACCCGCACACTTAGTGC
1 AACTCGCACACTTAGTGC
73313621 CAATCTCATG
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
57 61 0.90
58 7 0.10
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
AACTCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCA
Found at i:73321568 original size:28 final size:28
Alignment explanation
Indices: 73321536--73321663 Score: 175
Period size: 29 Copynumber: 4.5 Consensus size: 28
73321526 ATAGTAAGTC
*
73321536 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
73321564 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
73321593 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* ** * *
73321621 TGCACACTTAGTGCTATGCAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
73321650 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73321664 CAATCTCATG
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 44 0.49
29 45 0.51
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73321626 original size:57 final size:57
Alignment explanation
Indices: 73321535--73321663 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
73321525 TATAGTAAGT
*
73321535 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACA-AATCAAAC
* * * * *
73321592 TCGCACACTTAGTGCTATATAATCAAACTTGCACACTTAGTGCTATGCAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
73321649 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
73321664 CAATCTCATG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAAATCAAAC
Found at i:73326761 original size:15 final size:15
Alignment explanation
Indices: 73326725--73326757 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
73326715 TAAAAGCCAG
73326725 TAAT-TTTATTATTT
1 TAATATTTATTATTT
73326739 TAATATTTA-TATTT
1 TAATATTTATTATTT
73326753 TAATA
1 TAATA
73326758 ATTTTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TAATATTTATTATTT
Found at i:73331883 original size:15 final size:15
Alignment explanation
Indices: 73331814--73331889 Score: 75
Period size: 15 Copynumber: 5.1 Consensus size: 15
73331804 TAAAGATAAC
*
73331814 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
73331828 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* * *
73331843 GAGAAACCCATAATA
1 AAGAAATCCAGAATA
73331858 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
73331873 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
73331888 AA
1 AA
73331890 AAAACCCAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
14 9 0.18
15 41 0.80
16 1 0.02
ACGTcount: A:0.58, C:0.14, G:0.16, T:0.12
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:73335910 original size:43 final size:43
Alignment explanation
Indices: 73335787--73335997 Score: 225
Period size: 43 Copynumber: 5.0 Consensus size: 43
73335777 ATTATCGAGA
* *
73335787 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCACTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
*
73335830 TGTGATTACATGTAAGACCATGTCTAGGATATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
* *
73335873 TGTGATTACGTGTAAGACCATGTCTGGGATATTGGCATCGT-T
1 TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
*** * * * * *
73335915 ATACAATTACATGTAA-ACCCTGTTTGGGACAGTGGCATCG-AT
1 -TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
* * *
73335957 ATGTGATAACATGTAAGA-CATATTTGGGATA-TGGCATTGTA
1 -TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTA
73335998 CGAGGTTTAT
Statistics
Matches: 142, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
41 7 0.05
42 45 0.32
43 90 0.63
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
Found at i:73339471 original size:40 final size:40
Alignment explanation
Indices: 73339441--73339662 Score: 224
Period size: 40 Copynumber: 5.6 Consensus size: 40
73339431 GCTACTCGTT
* * *
73339441 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCA
73339481 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCA
73339521 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-TTATAGTAACTCGCA
* * ** *
73339561 CCAATGCCTTCGGG-CTTAGCCCGAAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCA
** * * * *
73339599 CAAATGCCTTC-GGATCTTAGTCC-GATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGTTATAGTAAC-TCGCA
*
73339639 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGG
73339663 ACATCATTCG
Statistics
Matches: 159, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
37 2 0.01
38 24 0.15
39 32 0.20
40 99 0.62
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGTTATAGTAACTCGCA
Found at i:73339545 original size:80 final size:80
Alignment explanation
Indices: 73339441--73339663 Score: 269
Period size: 80 Copynumber: 2.8 Consensus size: 80
73339431 GCTACTCGTT
* * *
73339441 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
73339506 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* *
73339521 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCC-
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
73339583 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * *
73339599 CAAATGCCTTC-GGATCTTAGTCC-GATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
73339661 GGA
64 GGA
73339664 CATCATTCGA
Statistics
Matches: 123, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
76 1 0.01
77 18 0.15
78 46 0.37
79 9 0.07
80 47 0.38
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:73339657 original size:78 final size:78
Alignment explanation
Indices: 73339441--73339661 Score: 241
Period size: 78 Copynumber: 2.8 Consensus size: 78
73339431 GCTACTCGTT
* * * * * *
73339441 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCC-G
*
73339506 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* * *
73339521 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGA
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGA
*
73339585 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
** * *
73339599 CAAATGCCTTC-GGATCTTAGTCC-GATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCG
73339662 GACATCATTC
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
77 23 0.19
78 44 0.36
79 7 0.06
80 44 0.36
81 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGAA
TTAGTAACTCGCA
Found at i:73347639 original size:37 final size:40
Alignment explanation
Indices: 73347551--73347653 Score: 149
Period size: 37 Copynumber: 2.6 Consensus size: 40
73347541 TAGCCGGTTA
*
73347551 TAGTAACTCGCACAAATGCTCTTCGAGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGC-CTTCGAGACTTAACCCGGAAT
*
73347592 TAGTAACTCGCACAAATGCCTTCG-G-CTT-AGCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAAT
*
73347629 TAGTATCTCGCACAAATGCCTTCGA
1 TAGTAACTCGCACAAATGCCTTCGA
73347654 TCTTAGTCCG
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
37 30 0.52
38 3 0.05
39 1 0.02
40 5 0.09
41 19 0.33
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.26
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGAAT
Found at i:73356825 original size:21 final size:21
Alignment explanation
Indices: 73356801--73356876 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
73356791 CATCATGAAC
73356801 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* * **
73356822 TCAGATGTCACATATATC-ATGAAC
1 TCAGA--CCACA-A-CTCAATGAGT
73356846 TCAGACCACAACTCAATGAGT
1 TCAGACCACAACTCAATGAGT
* *
73356867 TTAGATCACA
1 TCAGACCACA
73356877 TAGTTCCTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
20 2 0.05
21 18 0.45
22 4 0.10
23 4 0.10
24 10 0.25
25 2 0.05
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (21 bp):
TCAGACCACAACTCAATGAGT
Found at i:73356841 original size:45 final size:45
Alignment explanation
Indices: 73356786--73356872 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
73356776 AAACATGTGT
73356786 ACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGTC
1 ACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGTC
* *
73356831 ACATATATCATGAACTCAGACCACAACTCAATGAGTTTAGAT
1 ACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGAT
73356873 CACATAGTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.24
Consensus pattern (45 bp):
ACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGATGTC
Found at i:73363208 original size:43 final size:44
Alignment explanation
Indices: 73363161--73363372 Score: 222
Period size: 43 Copynumber: 4.9 Consensus size: 44
73363151 TTATCGAGAC
73363161 GTGATTAGATGTAAGACCATGTCTGGGACATTGGCATTGTAT-T
1 GTGATTAGATGTAAGACCATGTCTGGGACATTGGCATTGTATAT
* * *
73363204 GTGATTACATGTAAGATCATGTCTAGGACATTGGCATTGTAT-T
1 GTGATTAGATGTAAGACCATGTCTGGGACATTGGCATTGTATAT
* *
73363247 GTGATTACG-TGTAAGACCATATCTGGGACATTGGCATCGT-TAT
1 GTGATTA-GATGTAAGACCATGTCTGGGACATTGGCATTGTATAT
** * * * * *
73363290 ACGATTACG-TGTAAAACCCTGACTGGGACAGTGGCATCG-ATAT
1 GTGATTA-GATGTAAGACCATGTCTGGGACATTGGCATTGTATAT
* * *
73363333 GTGATAACATGTAAGACCATATCTGGGACA-TGGCATTGTA
1 GTGATTAGATGTAAGACCATGTCTGGGACATTGGCATTGTA
73363373 CGAGATTTAT
Statistics
Matches: 140, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
42 8 0.06
43 132 0.94
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.31
Consensus pattern (44 bp):
GTGATTAGATGTAAGACCATGTCTGGGACATTGGCATTGTATAT
Found at i:73363274 original size:86 final size:87
Alignment explanation
Indices: 73363161--73363372 Score: 245
Period size: 86 Copynumber: 2.5 Consensus size: 87
73363151 TTATCGAGAC
* ** * *
73363161 GTGATTA-GATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TGTGATTACATGTAAGATCAT
1 GTGATTACG-TGTAAGACCATATCTGGGACATTGGCATTGTATATACGATTACATGTAAAACCAT
* * *
73363224 GTCTAGGACATTGGCATTG-TATT
65 GACTAGGACAGTGGCATCGATA-T
* * *
73363247 GTGATTACGTGTAAGACCATATCTGGGACATTGGCATCGT-TATACGATTACGTGTAAAACCCTG
1 GTGATTACGTGTAAGACCATATCTGGGACATTGGCATTGTATATACGATTACATGTAAAACCATG
*
73363311 ACTGGGACAGTGGCATCGATAT
66 ACTAGGACAGTGGCATCGATAT
* *
73363333 GTGATAACATGTAAGACCATATCTGGGACA-TGGCATTGTA
1 GTGATTACGTGTAAGACCATATCTGGGACATTGGCATTGTA
73363373 CGAGATTTAT
Statistics
Matches: 107, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
85 9 0.08
86 95 0.89
87 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.31
Consensus pattern (87 bp):
GTGATTACGTGTAAGACCATATCTGGGACATTGGCATTGTATATACGATTACATGTAAAACCATG
ACTAGGACAGTGGCATCGATAT
Found at i:73364645 original size:14 final size:15
Alignment explanation
Indices: 73364626--73364655 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
73364616 ATATTTGACT
73364626 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
73364640 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
73364655 T
1 T
73364656 TTTAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:73366672 original size:93 final size:93
Alignment explanation
Indices: 73366565--73366735 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
73366555 GCCCATAAGT
* * *
73366565 GAACTCGAACTCAACTCAATGAGCTCAGG-CGTTCGCATCTATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73366629 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
73366658 GAACTCCG-ACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACT-CGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
73366722 ACGAGTTCGGATGC
65 ACGAGCTCGGATGC
73366736 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
92 2 0.03
93 67 0.94
94 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:73366732 original size:46 final size:45
Alignment explanation
Indices: 73366557--73366731 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
73366547 TGTAACCCGC
* * *
73366557 CCATAAGTGAACTCGAACTCAACTCAATGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
73366603 CTATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** * *
73366649 ACATCTCTCGAACTCCGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
73366696 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
73366732 ATGCTCAACC
Statistics
Matches: 104, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 62 0.60
47 31 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:73366751 original size:46 final size:45
Alignment explanation
Indices: 73366608--73366751 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 45
73366598 CGCATCTATA
*
73366608 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* * *
73366657 --CGAACTCCGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
73366700 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
73366747 AGTGA
1 AGTGA
73366752 CATGTCACTT
Statistics
Matches: 78, Mismatches: 7, Indels: 23
0.72 0.06 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 33 0.42
47 28 0.36
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:73369137 original size:30 final size:30
Alignment explanation
Indices: 73369093--73369181 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
73369083 CAAAGATAAC
73369093 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
73369122 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
73369152 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
73369182 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:73369141 original size:15 final size:15
Alignment explanation
Indices: 73369093--73369172 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
73369083 CAAAGATAAC
*
73369093 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
73369107 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
73369122 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
73369137 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
73369152 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
73369167 AAGAAA
1 AAGAAA
73369173 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:73369181 original size:15 final size:15
Alignment explanation
Indices: 73369104--73369181 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
73369094 AGAAAACCGA
73369104 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
73369119 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
73369133 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
73369148 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
73369164 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
73369179 ATA
1 ATA
73369182 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:73372201 original size:46 final size:48
Alignment explanation
Indices: 73372078--73372207 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 48
73372068 TGTAACCCGC
*
73372078 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
*
73372128 CTC-TCA---AACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCACAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
73372171 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73372208 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 3, Indels: 16
0.79 0.03 0.18
Matches are distributed among these distances:
42 3 0.04
43 8 0.11
44 1 0.01
46 28 0.39
47 27 0.38
50 3 0.04
51 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:73372226 original size:46 final size:46
Alignment explanation
Indices: 73372081--73372226 Score: 142
Period size: 46 Copynumber: 3.2 Consensus size: 46
73372071 AACCCGCCCA
*
73372081 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGTTACATCTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACATC-C
* ***
73372131 TCA---AACTCGGACTCAACTCAACGAGTTCGGACATTC-ACATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC
73372173 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA-CATCC
73372221 T-AGTGA
1 TAAGTGA
73372227 CATGTCACTT
Statistics
Matches: 80, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
42 1 0.01
43 7 0.09
46 35 0.44
47 29 0.36
48 6 0.08
50 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACATCC
Found at i:73382523 original size:38 final size:38
Alignment explanation
Indices: 73382471--73382547 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
73382461 GCCCGAGACA
73382471 TACGGCTGAAACACACGCCTGTGTCTATACCTGTGTGC
1 TACGGCTGAAACACACGCCTGTGTCTATACCTGTGTGC
*
73382509 TACGGCTGAGACACACGCCTGTGTCTATACCTGTGTGC
1 TACGGCTGAAACACACGCCTGTGTCTATACCTGTGTGC
73382547 T
1 T
73382548 CAATTCTGAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.19, C:0.29, G:0.25, T:0.27
Consensus pattern (38 bp):
TACGGCTGAAACACACGCCTGTGTCTATACCTGTGTGC
Found at i:73382942 original size:21 final size:21
Alignment explanation
Indices: 73382916--73382956 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
73382906 ATTCTACTTT
73382916 GATTTTTCTAACATACCAATA
1 GATTTTTCTAACATACCAATA
73382937 GATTTTTCTAACATACCAAT
1 GATTTTTCTAACATACCAAT
73382957 GAGCCATACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.20, G:0.05, T:0.39
Consensus pattern (21 bp):
GATTTTTCTAACATACCAATA
Found at i:73386817 original size:39 final size:39
Alignment explanation
Indices: 73386760--73386892 Score: 203
Period size: 39 Copynumber: 3.4 Consensus size: 39
73386750 ATGTATGAGA
*
73386760 CTAGAAATATATCCGGACATGAGGTCCGCAGGCTATATG
1 CTAGAAATATATCCGGACATGAGGTCTGCAGGCTATATG
*
73386799 CTGGAAATATATCCGGACATGAGGTCTGCAGGCTATATG
1 CTAGAAATATATCCGGACATGAGGTCTGCAGGCTATATG
* * **
73386838 CTAGAAATATATTCGGACTTGAGGTCTGCAGGCTACGTG
1 CTAGAAATATATCCGGACATGAGGTCTGCAGGCTATATG
*
73386877 CTAGAAAAATATCCGG
1 CTAGAAATATATCCGG
73386893 GTTAAAGACC
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (39 bp):
CTAGAAATATATCCGGACATGAGGTCTGCAGGCTATATG
Found at i:73402789 original size:40 final size:39
Alignment explanation
Indices: 73402705--73402887 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
73402695 TTGAATGATG
* * * *
73402705 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
73402745 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
73402785 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
73402823 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
73402863 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
73402888 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 35 0.28
39 34 0.27
40 47 0.38
41 8 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73402905 original size:79 final size:77
Alignment explanation
Indices: 73402758--73402920 Score: 188
Period size: 78 Copynumber: 2.1 Consensus size: 77
73402748 GGACTAAGAT
* **
73402758 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCGAAGGCATTTGAACGAGTTACTAAA
*
73402823 TCCGGGTTAAGTC
66 TCC-GGTTAAATC
* *
73402836 CCGAAGGCA-TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG--CCGAAGGCATTTGAACGAGTTA-C
* *
73402898 TATATCCGGTTAAATT
62 TAAATCCGGTTAAATC
73402914 CCGAAGG
1 CCGAAGG
73402921 TACGTGATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
76 2 0.03
77 22 0.30
78 25 0.34
79 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGTTAAATC
Found at i:73410751 original size:39 final size:41
Alignment explanation
Indices: 73410650--73410833 Score: 206
Period size: 39 Copynumber: 4.6 Consensus size: 41
73410640 TTGAATGATG
* *
73410650 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
*
73410690 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
*
73410730 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
73410769 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
73410808 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73410834 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
38 1 0.01
39 69 0.55
40 43 0.34
41 12 0.10
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:73410786 original size:79 final size:80
Alignment explanation
Indices: 73410650--73410833 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 80
73410640 TTGAATGATG
*
73410650 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCA-T
73410714 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * * **
73410729 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
73410791 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* *
73410808 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73410834 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 49 0.54
80 18 0.20
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
GTGCGAGATACTATA
Found at i:73410856 original size:78 final size:79
Alignment explanation
Indices: 73410703--73410866 Score: 201
Period size: 78 Copynumber: 2.1 Consensus size: 79
73410693 GGACTAAGAT
* **
73410703 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
73410768 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
73410782 CCGAAGGCA-TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
73410844 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
73410860 CCGAAGG
1 CCGAAGG
73410867 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
77 2 0.03
78 38 0.51
79 34 0.46
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:73418104 original size:48 final size:47
Alignment explanation
Indices: 73418049--73418321 Score: 235
Period size: 48 Copynumber: 5.7 Consensus size: 47
73418039 ATGGTAAATT
* * *
73418049 GCCGATGCTATGTCCCAGACATGGTCTTACATTGGCTTACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CATATCGAG
* * * *
73418097 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTGCATTTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTT-CATATCGAG
* *
73418145 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATATCGAG
* * * * * *
73418193 GCCAATGCCATGGCCCAGACATGGTCTTACACTAG-TACACATATCAAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT--TCATATCGAG
* * * * * * *
73418241 GTCGAAGCCATATCCCAGGCATGGTCTTACACTGGATCTCATA-CCATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCT-TCATATCGA-G
* * * *
73418289 GTCGACGCCATGTTCCAGGCATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
73418322 AGCACACATA
Statistics
Matches: 187, Mismatches: 34, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
47 3 0.02
48 182 0.97
49 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTCATATCGAG
Found at i:73418216 original size:96 final size:97
Alignment explanation
Indices: 73418051--73418334 Score: 326
Period size: 96 Copynumber: 3.0 Consensus size: 97
73418041 GGTAAATTGC
* * * *
73418051 CGATGCTATGTCCCAGACATGGTCTTACATTGGCT-TACATGTCGAGGCCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATATCGTGGCCGATGCCATGTCCCAG
** * *
73418115 ACATGGTCTTACACTAGCT-TGCATTTCAATG-
65 ACATGGTCTTACACTAGCTACACATATCAACGT
* *
73418146 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGCCAATGCCATGGCCCAG
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAG
73418211 ACATGGTCTTACACTAG-TACACATATCAACGT
65 ACATGGTCTTACACTAGCTACACATATCAACGT
* * * * * * * * * * *
73418243 CGAAGCCATATCCCAGGCATGGTCTTACACTGGATCTCATACCATTGTCGACGCCATGTTCCAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGA
73418308 CATGGTCTTACACTAGC-ACACATATCA
66 CATGGTCTTACACTAGCTACACATATCA
73418335 CTCAAATGTC
Statistics
Matches: 161, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
95 2 0.01
96 157 0.98
97 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (97 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCTACACATATCAACGT
Found at i:73419319 original size:40 final size:39
Alignment explanation
Indices: 73419248--73419329 Score: 101
Period size: 40 Copynumber: 2.1 Consensus size: 39
73419238 TAACGACTTA
**
73419248 TCGGCTAAAATGACACTTAGTGTGCGGTTTGAAATAGCT
1 TCGGCTAAAATGACACTTAGTGTGCAATTTGAAATAGCT
* * * *
73419287 TCGGCTAAAAGTGGCACTTGGTGTGCAATTTGAGATAGTT
1 TCGGCTAAAA-TGACACTTAGTGTGCAATTTGAAATAGCT
73419327 TCG
1 TCG
73419330 TCTATATTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
39 10 0.28
40 26 0.72
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.32
Consensus pattern (39 bp):
TCGGCTAAAATGACACTTAGTGTGCAATTTGAAATAGCT
Found at i:73422120 original size:50 final size:50
Alignment explanation
Indices: 73422053--73422188 Score: 184
Period size: 50 Copynumber: 2.7 Consensus size: 50
73422043 CAATACATGT
* * * *
73422053 GAGCTAGTGTAAAACCATGTCTGGGACATGGCATCGGCAC-GGAAAGAGGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAAAGAAGA
* * * *
73422103 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCAGCCTCGATATAAGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAAAGAAGA
73422153 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
73422189 ACTCGATATG
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
49 1 0.01
50 74 0.99
ACGTcount: A:0.29, C:0.20, G:0.32, T:0.19
Consensus pattern (50 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAAAGAAGA
Found at i:73422228 original size:47 final size:49
Alignment explanation
Indices: 73422058--73422228 Score: 170
Period size: 50 Copynumber: 3.5 Consensus size: 49
73422048 CATGTGAGCT
* * * * * *
73422058 AGTGTAAAACCATGTCTGGGACATGGCATCGGCAC-GGAAAGAGGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAG-ACTCGATATA-GAGAGAC
* * *
73422108 AGTGTAAGACCATGTCTGGGATATGGCATCAGCCTCGATATAAGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGACTCGATAT-AGAGAGAC
* *
73422158 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGATAT-GTGATTAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCAGACTCGATATAGAGA-GAC
*
73422206 A-TGTAAGACCATGTTTGGGACAT
1 AGTGTAAGACCATGTCTGGGACAT
73422229 TAGCATTGTA
Statistics
Matches: 105, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
47 24 0.23
48 2 0.02
49 10 0.10
50 68 0.65
51 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (49 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCAGACTCGATATAGAGAGAC
Found at i:73422287 original size:43 final size:43
Alignment explanation
Indices: 73422160--73422303 Score: 130
Period size: 43 Copynumber: 3.3 Consensus size: 43
73422150 AGAGAGCCAG
* *
73422160 TGTAAGACCATGTCTGGGACATGGCATCGACTCGATATGTGATTACA
1 TGTAAGACCATGTGTGGGACAT-G-AGC-A-TCGATATGTGATTACA
* * * * *
73422207 TGTAAGACCATGTTTGGGACATTAGCATTG-TATTGTGATTTCG
1 TGTAAGACCATGTGTGGGACATGAGCATCGATA-TGTGATTACA
* * *
73422250 TGTAAGACCCTGTGTGGGATAGTGA-CATCGATATGTGATAACA
1 TGTAAGACCATGTGTGGGACA-TGAGCATCGATATGTGATTACA
73422293 TGTAAGACCAT
1 TGTAAGACCAT
73422304 ATCTAGGATA
Statistics
Matches: 79, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
42 2 0.03
43 49 0.62
44 5 0.06
45 2 0.03
47 21 0.27
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTGTGGGACATGAGCATCGATATGTGATTACA
Found at i:73427149 original size:40 final size:39
Alignment explanation
Indices: 73427085--73427170 Score: 102
Period size: 40 Copynumber: 2.2 Consensus size: 39
73427075 TAATGACTTA
* **
73427085 TCGGCTAAAATGGCAGTTAGTGTGCGGTTTGAAATAGCT
1 TCGGCTAAAATGGCACTTAGTGTGCAATTTGAAATAGCT
*
73427124 TCGGCTAAAAGTGGCACTT-GATGTGCAATTTGAGATAGCT
1 TCGGCTAAAA-TGGCACTTAG-TGTGCAATTTGAAATAGCT
*
73427164 TTGGCTA
1 TCGGCTA
73427171 TATTTATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
39 11 0.28
40 29 0.73
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (39 bp):
TCGGCTAAAATGGCACTTAGTGTGCAATTTGAAATAGCT
Found at i:73430440 original size:25 final size:25
Alignment explanation
Indices: 73430404--73430574 Score: 207
Period size: 25 Copynumber: 6.8 Consensus size: 25
73430394 TAAGCTTGTT
*
73430404 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* *
73430429 AAATTGCTCTTAAAAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* *
73430454 AAATTGCTCTTAATAATTCCGATTA
1 AATTTGCTCTTAATAATTCCGGTTA
*
73430479 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
**
73430504 AATTTTTTCTTAATAATTCCGGTTA
1 AATTTGCTCTTAATAATTCCGGTTA
* * *
73430529 AATTTGCTCTTAACATTTCCGATTA
1 AATTTGCTCTTAATAATTCCGGTTA
* * * *
73430554 AGTTTGCCCTTATTATTTCCG
1 AATTTGCTCTTAATAATTCCG
73430575 AATAAGTTAC
Statistics
Matches: 128, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 128 1.00
ACGTcount: A:0.29, C:0.16, G:0.11, T:0.45
Consensus pattern (25 bp):
AATTTGCTCTTAATAATTCCGGTTA
Found at i:73430494 original size:75 final size:75
Alignment explanation
Indices: 73430404--73430559 Score: 240
Period size: 75 Copynumber: 2.1 Consensus size: 75
73430394 TAAGCTTGTT
*
73430404 AATTTGTTCTTAATAATTCCGGTTAAAATTGCTCTTAAAAATTCCGGTTAAAATTGCTCTTAATA
1 AATTTGTTCTTAATAATTCCGGTTAAAATTGCTCTTAAAAATTCCGGTTAAAATTGCTCTTAACA
73430469 ATTCCGATTA
66 ATTCCGATTA
* ** * *
73430479 AATTTGTTCTTAATAATTCCGGTTAAATTTTTTCTTAATAATTCCGGTTAAATTTGCTCTTAACA
1 AATTTGTTCTTAATAATTCCGGTTAAAATTGCTCTTAAAAATTCCGGTTAAAATTGCTCTTAACA
*
73430544 TTTCCGATTA
66 ATTCCGATTA
*
73430554 AGTTTG
1 AATTTG
73430560 CCCTTATTAT
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.45
Consensus pattern (75 bp):
AATTTGTTCTTAATAATTCCGGTTAAAATTGCTCTTAAAAATTCCGGTTAAAATTGCTCTTAACA
ATTCCGATTA
Found at i:73430575 original size:25 final size:25
Alignment explanation
Indices: 73430520--73430582 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
73430510 TTCTTAATAA
* * *
73430520 TTCCGGTTAAATTTGCTCTTAACAT
1 TTCCGATTAAGTTTGCCCTTAACAT
**
73430545 TTCCGATTAAGTTTGCCCTTATTAT
1 TTCCGATTAAGTTTGCCCTTAACAT
*
73430570 TTCCGAATAAGTT
1 TTCCGATTAAGTT
73430583 ACTTAGTTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.24, C:0.19, G:0.13, T:0.44
Consensus pattern (25 bp):
TTCCGATTAAGTTTGCCCTTAACAT
Found at i:73431461 original size:45 final size:45
Alignment explanation
Indices: 73431394--73431583 Score: 326
Period size: 45 Copynumber: 4.2 Consensus size: 45
73431384 TATCGTACAG
*
73431394 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
73431439 TACTATTCGGGCCTTTGTGCCTAGCAGGCTATAATACCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
73431484 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
73431529 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
73431574 TACAATTCGG
1 TACTATTCGG
73431584 TCATAAGTGA
Statistics
Matches: 137, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 137 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:73438078 original size:25 final size:25
Alignment explanation
Indices: 73437885--73438065 Score: 299
Period size: 25 Copynumber: 7.2 Consensus size: 25
73437875 TAAGCTTGTT
73437885 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
73437910 AATTTGTTCTTAATAATTCAGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
73437935 AATTTGTTCTTAATAATCCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
*
73437960 AATTTGCTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* *
73437985 AATTTGTTCTTAATAATTTCGATTA
1 AATTTGTTCTTAATAATTCCGGTTA
73438010 AATTTGTTCTTAATAATTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
* *
73438035 AATTTGCTCTTAATATTTCCGGTTA
1 AATTTGTTCTTAATAATTCCGGTTA
73438060 AATTTG
1 AATTTG
73438066 CCCTTATTAT
Statistics
Matches: 144, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 144 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.48
Consensus pattern (25 bp):
AATTTGTTCTTAATAATTCCGGTTA
Found at i:73438964 original size:45 final size:45
Alignment explanation
Indices: 73438900--73439254 Score: 556
Period size: 45 Copynumber: 8.0 Consensus size: 45
73438890 TATCGTACAG
* *
73438900 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGATA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
73438945 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
73438990 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCAGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
73439035 TACTATTCGGGCCTTTGAACCTAGCAGGTTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
73439080 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
73439125 TACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATTCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
73439170 TACTATTCGGGCCTTCGAGCCTAGTAGGCTATAATGCCGATGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
73439215 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
73439255 ATGAATTAGG
Statistics
Matches: 292, Mismatches: 17, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
42 10 0.03
43 17 0.06
44 5 0.02
45 259 0.89
46 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:73441703 original size:47 final size:47
Alignment explanation
Indices: 73441548--73441705 Score: 146
Period size: 50 Copynumber: 3.4 Consensus size: 47
73441538 GATGTAAGCT
* *
73441548 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTATAA--GATGTGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACT-TAATGGATGAGTC
* * * * ** *
73441592 AGTGTAAGACCACGTTTGGGATATGGCATCAGCACGGATATGTGA-GAGTT
1 AGTGTAAGACCATGTCTAGGACATGGCATC-G-ACTTA-ATG-GATGAGTC
*
73441642 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTAATGGATGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTAATGGATGAGTC
73441689 AGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCT
73441706 GGCACACGAC
Statistics
Matches: 88, Mismatches: 17, Indels: 15
0.73 0.14 0.12
Matches are distributed among these distances:
44 9 0.10
45 10 0.11
46 7 0.08
47 25 0.28
48 5 0.06
49 1 0.01
50 29 0.33
51 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGACTTAATGGATGAGTC
Found at i:73443460 original size:55 final size:56
Alignment explanation
Indices: 73443376--73443494 Score: 222
Period size: 55 Copynumber: 2.1 Consensus size: 56
73443366 ACAAGGGATG
*
73443376 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAA-AATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGAAAGAATAAAATAAGAAGC
73443431 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGAAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGAAAGAATAAAATAAGAAGC
73443487 ATGGGCAA
1 ATGGGCAA
73443495 TAAACTAATA
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
55 39 0.63
56 23 0.37
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGAAAGAATAAAATAAGAAGC
Found at i:73444862 original size:40 final size:40
Alignment explanation
Indices: 73444624--73444848 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
73444614 TCGAATGATG
* * * *
73444624 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
73444664 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73444704 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73444743 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
73444783 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
73444824 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73444849 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73444870 original size:119 final size:119
Alignment explanation
Indices: 73444624--73444881 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
73444614 TCGAATGATG
* *
73444624 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
73444689 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
73444743 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
73444806 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
73444863 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
73444882 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:73452565 original size:39 final size:40
Alignment explanation
Indices: 73452463--73452654 Score: 171
Period size: 40 Copynumber: 4.8 Consensus size: 40
73452453 ACGAATGATG
* * *
73452463 TCCGCGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
73452502 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
73452543 TCCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACT-AAT
* * * *
73452583 T-CGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
73452622 TCCGAGTTAAGTCCCGAAGGAATTTGTGCGAGA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA
73452655 GTTACTATAA
Statistics
Matches: 127, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
39 32 0.25
40 82 0.65
41 12 0.09
42 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:73453686 original size:47 final size:47
Alignment explanation
Indices: 73453584--73454432 Score: 1308
Period size: 49 Copynumber: 17.9 Consensus size: 47
73453574 TCGGGACTTA
* * * * * * * *
73453584 ACATTTATACACTTTCCACATCCATCACGTTGGCCACTCGGCCCTGTC
1 ACATATATACACTTT-CACATTCATCACATCGGCCATTAGGCCTTATC
73453632 ACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
73453678 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
73453725 ACATATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 AC--ATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
*
73453775 AATATATATAACACTTTCACATTCATCACATCCGGCCATTAGGCCTTATC
1 -ACATATAT-ACACTTTCACATTCATCACAT-CGGCCATTAGGCCTTATC
*
73453825 AGATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-T-T-
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
73453869 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
*
73453916 ACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATC
1 AC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
73453965 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
73454012 ACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 AC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
73454061 ACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATC
1 AC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
73454109 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
*
73454156 ACATATATATACACTTTCACATTCATCACATCGGCC-TTA----TCA-C
1 AC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
* *
73454199 ATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
73454246 ACATATATACACTTTCACATTCATCCACATCGGCCATTAGGCCTTATC
1 ACATATATACACTTTCACATTCAT-CACATCGGCCATTAGGCCTTATC
73454294 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
73454340 ACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 AC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
73454389 ACATATTTATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACATA--TATACACTTTCACATTCATCACATCGGCCATTAGGCC
73454433 ATACTATCAT
Statistics
Matches: 754, Mismatches: 19, Indels: 55
0.91 0.02 0.07
Matches are distributed among these distances:
41 31 0.04
42 3 0.00
43 2 0.00
44 43 0.06
45 2 0.00
46 78 0.10
47 167 0.22
48 119 0.16
49 251 0.33
50 57 0.08
51 1 0.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
Found at i:73454121 original size:240 final size:239
Alignment explanation
Indices: 73453589--73454428 Score: 1361
Period size: 240 Copynumber: 3.5 Consensus size: 239
73453579 ACTTAACATT
* * * * * *
73453589 TATACACTTTCCACATCCATCACGTTGGCCACTCGGCCCTGTCACA-ATATACACTTTCACATTC
1 TATACACTTT-CACATTCATCACATCGGCCATTAGG-CCTATCACATATATACACTTTCACATTC
73453653 ATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA
64 ATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
*
73453716 GGCCTTATCACATATATATAACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA-ATAT
129 AGCCTTATCAC--ATATAT-ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
*
73453780 ATATAACACTTTCACATTCATCACATCCGGCCATTAGGCCTTATCA-GATA
191 ATAT-ACACTTTCACATTCATCACAT-CGGCCATTAGGCCTTATCACAATA
73453830 TATACACTTTCACATTCATCACATCGGCCATTAGGCCT-T-ACATATATACACTTTCACATTCAT
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCAT
73453893 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAG
66 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAG
73453958 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
131 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
73454023 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
196 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATA
73454068 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCAT
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCAT
73454133 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCC-TT-A-
66 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAG
* * *
73454195 --TCA-CATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC--ATATATA
131 CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
73454255 CACTTTCACATTCATCCACATCGGCCATTAGGCCTTATCAC-ATA
196 CACTTTCACATTCAT-CACATCGGCCATTAGGCCTTATCACAATA
73454299 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATATACACTTTCACATTC
1 TATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCAC--ATATATACACTTTCACATTC
*
73454364 ATCACATCGGCCATTAGGCCTTATCACATATTTATACACTTTCACATTCATCACATCGGCCATTA
64 ATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
73454429 GGCCATACTA
Statistics
Matches: 575, Mismatches: 11, Indels: 32
0.93 0.02 0.05
Matches are distributed among these distances:
231 46 0.08
232 22 0.04
233 105 0.18
234 50 0.09
235 2 0.00
236 19 0.03
237 64 0.11
238 102 0.18
239 6 0.01
240 149 0.26
241 10 0.02
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (239 bp):
TATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACTTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAG
CCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATA
Found at i:73454177 original size:18 final size:18
Alignment explanation
Indices: 73454154--73454218 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
73454144 TTAGGCCTTA
73454154 TCACATATATATACACTT
1 TCACATATATATACACTT
* *
73454172 TCACAT-TCATCACATCGGCCTT
1 TCACATAT-AT-ATA-C--ACTT
73454194 ATCACATATATATACACTT
1 -TCACATATATATACACTT
73454213 TCACAT
1 TCACAT
73454219 TCATCACATC
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
17 1 0.03
18 14 0.39
19 5 0.14
20 1 0.03
21 1 0.03
22 5 0.14
23 8 0.22
24 1 0.03
ACGTcount: A:0.34, C:0.28, G:0.03, T:0.35
Consensus pattern (18 bp):
TCACATATATATACACTT
Found at i:73533740 original size:21 final size:21
Alignment explanation
Indices: 73533710--73533798 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
73533700 CTCACAAAGA
* *
73533710 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
73533730 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
73533751 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
73533772 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
73533796 AAA
1 AAA
73533799 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:73533791 original size:24 final size:21
Alignment explanation
Indices: 73533710--73533778 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
73533700 CTCACAAAGA
* * *
73533710 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
73533730 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
73533751 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
73533772 AAAAAGA
1 AAAAAGA
73533779 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:73537955 original size:14 final size:14
Alignment explanation
Indices: 73537936--73537964 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
73537926 TACAATATAT
73537936 ATAAGAATTATACG
1 ATAAGAATTATACG
73537950 ATAAGAATTATACG
1 ATAAGAATTATACG
73537964 A
1 A
73537965 ATCCATCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (14 bp):
ATAAGAATTATACG
Found at i:73540745 original size:13 final size:15
Alignment explanation
Indices: 73540720--73540759 Score: 66
Period size: 13 Copynumber: 2.8 Consensus size: 15
73540710 TATTTTATTA
73540720 AATAAATATTAAATT
1 AATAAATATTAAATT
73540735 AA-AAA-ATTAAATT
1 AATAAATATTAAATT
73540748 AATAAATATTAA
1 AATAAATATTAA
73540760 TAAATTAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.43
14 6 0.26
15 7 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (15 bp):
AATAAATATTAAATT
Found at i:73552515 original size:12 final size:12
Alignment explanation
Indices: 73552498--73552522 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73552488 CAGAGGCTAT
73552498 TAACAATATTTA
1 TAACAATATTTA
73552510 TAACAATATTTA
1 TAACAATATTTA
73552522 T
1 T
73552523 GTTATAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TAACAATATTTA
Found at i:73555072 original size:21 final size:20
Alignment explanation
Indices: 73555043--73555081 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
73555033 ACGCCTACGA
73555043 AAAGATCGCTTGGATTTAAG
1 AAAGATCGCTTGGATTTAAG
73555063 AAAGAGTCGCTTGGATTTA
1 AAAGA-TCGCTTGGATTTA
73555082 TCCATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (20 bp):
AAAGATCGCTTGGATTTAAG
Found at i:73555281 original size:15 final size:15
Alignment explanation
Indices: 73555261--73555299 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
73555251 TATCATTTCA
73555261 ATATATAATTAAAAT
1 ATATATAATTAAAAT
*
73555276 ATATATAAATTTAAAT
1 ATATAT-AATTAAAAT
73555292 ATAT-TAAT
1 ATATATAAT
73555300 AATATTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 7 0.32
16 12 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATATATAATTAAAAT
Found at i:73555317 original size:18 final size:18
Alignment explanation
Indices: 73555267--73555318 Score: 56
Period size: 16 Copynumber: 3.0 Consensus size: 18
73555257 TTCAATATAT
*
73555267 AATTAAAATAT-AT-ATA
1 AATTTAAATATAATAATA
*
73555283 AATTTAAATATATTAATA
1 AATTTAAATATAATAATA
73555301 ATATTTAAATA-AATAATA
1 A-ATTTAAATATAATAATA
73555319 TTAATAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 10 0.33
17 1 0.03
18 10 0.33
19 9 0.30
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AATTTAAATATAATAATA
Found at i:73557057 original size:13 final size:13
Alignment explanation
Indices: 73557039--73557072 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
73557029 ACCTCCTTGG
73557039 ATTAAATTATTAA
1 ATTAAATTATTAA
73557052 ATTAAAATTATTAA
1 ATT-AAATTATTAA
73557066 A-TAAATT
1 ATTAAATT
73557073 GAAATTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 4 0.20
14 11 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTAAATTATTAA
Found at i:73564325 original size:17 final size:17
Alignment explanation
Indices: 73564305--73564338 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
73564295 TTCGTATATT
*
73564305 ATACTAATTATATCTAA
1 ATACTAAGTATATCTAA
73564322 ATACTAAGTATATCTAA
1 ATACTAAGTATATCTAA
73564339 GCGAATCTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.12, G:0.03, T:0.38
Consensus pattern (17 bp):
ATACTAAGTATATCTAA
Found at i:73570467 original size:92 final size:91
Alignment explanation
Indices: 73570311--73570479 Score: 311
Period size: 92 Copynumber: 1.8 Consensus size: 91
73570301 GCCCATAAGT
*
73570311 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
73570376 GAGTTCGGATGCCTAGTTACATTCAC
66 GAGTTCGGATGCCTAGTTACATTCAC
*
73570402 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73570467 CGAGTTCGGATGC
65 CGAGTTCGGATGC
73570480 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
91 27 0.36
92 48 0.64
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTCAC
Found at i:73570476 original size:46 final size:45
Alignment explanation
Indices: 73570303--73570475 Score: 226
Period size: 46 Copynumber: 3.8 Consensus size: 45
73570293 TGTAACCCGC
* *
73570303 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCAT
*
73570348 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--T
* * *
73570394 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCAT
73570440 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
73570476 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 10, Indels: 15
0.81 0.07 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 37 0.34
46 62 0.56
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCAT
Found at i:73570495 original size:46 final size:46
Alignment explanation
Indices: 73570308--73570495 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
73570298 CCCGCCCATA
* * * *
73570308 AGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
73570352 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
73570400 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
73570445 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
73570491 AGTGA
1 AGTGA
73570496 CATGTCACTT
Statistics
Matches: 116, Mismatches: 12, Indels: 29
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 32 0.28
46 65 0.56
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:73572880 original size:30 final size:30
Alignment explanation
Indices: 73572836--73572924 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
73572826 CAAAGATAAC
73572836 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
73572865 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
73572895 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
73572925 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:73572884 original size:15 final size:15
Alignment explanation
Indices: 73572836--73572915 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
73572826 CAAAGATAAC
*
73572836 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
73572850 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
73572865 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
73572880 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
73572895 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
73572910 AAGAAA
1 AAGAAA
73572916 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:73572924 original size:15 final size:15
Alignment explanation
Indices: 73572847--73572924 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
73572837 AGAAAACCGA
73572847 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
73572862 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
73572876 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
73572891 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
73572907 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
73572922 ATA
1 ATA
73572925 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Done.