Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 225 of 325
Found at i:73576028 original size:46 final size:45
Alignment explanation
Indices: 73575843--73576028 Score: 141
Period size: 46 Copynumber: 4.0 Consensus size: 45
73575833 GCCCATAAGC
* * * * *
73575843 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCA--TAGT
1 GAACTCGGACTCAACTCAACGAGTTC-GG-ATGCTCAACCATCTAGT
* *
73575888 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT-AGT
* * * *
73575935 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCTAGT
73575981 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CTAGT
73576027 GA
1 GA
73576029 CATGTCACTT
Statistics
Matches: 114, Mismatches: 13, Indels: 27
0.74 0.08 0.18
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 11 0.10
45 28 0.25
46 33 0.29
47 32 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCTAGT
Found at i:73586092 original size:25 final size:25
Alignment explanation
Indices: 73586055--73586130 Score: 127
Period size: 25 Copynumber: 3.1 Consensus size: 25
73586045 ATGTTCATGC
*
73586055 GAGCC-ATGTCAGGAAGCTCATAAA
1 GAGCCTATATCAGGAAGCTCATAAA
73586079 GAGCCTATATCAGGAAGCTCATAAA
1 GAGCCTATATCAGGAAGCTCATAAA
*
73586104 GAGCCTATATCAGGATGCTCATAAA
1 GAGCCTATATCAGGAAGCTCATAAA
73586129 GA
1 GA
73586131 TCTGTATTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
24 5 0.10
25 44 0.90
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (25 bp):
GAGCCTATATCAGGAAGCTCATAAA
Found at i:73593541 original size:25 final size:26
Alignment explanation
Indices: 73593476--73593541 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 26
73593466 TACATAGTTC
73593476 CTCACACGAGTTGTGAAATAGGTATG
1 CTCACACGAGTTGTGAAATAGGTATG
* * *
73593502 CACACATGAGTTGTGAAAT-GGTCTG
1 CTCACACGAGTTGTGAAATAGGTATG
*
73593527 CTCACACGAGATGTG
1 CTCACACGAGTTGTG
73593542 GGTCGAAATC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 17 0.50
26 17 0.50
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (26 bp):
CTCACACGAGTTGTGAAATAGGTATG
Found at i:73602275 original size:28 final size:28
Alignment explanation
Indices: 73602244--73602303 Score: 104
Period size: 28 Copynumber: 2.1 Consensus size: 28
73602234 CATCTGACCA
73602244 TGTCACACACT-GCTGAGACACATGCCCG
1 TGTCACACA-TGGCTGAGACACATGCCCG
73602272 TGTCACACATGGCTGAGACACATGCCCG
1 TGTCACACATGGCTGAGACACATGCCCG
73602300 TGTC
1 TGTC
73602304 TCTACCTATG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 1 0.03
28 30 0.97
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.20
Consensus pattern (28 bp):
TGTCACACATGGCTGAGACACATGCCCG
Found at i:73607621 original size:93 final size:93
Alignment explanation
Indices: 73607509--73607680 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
73607499 CGCCCATAAG
* *
73607509 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73607574 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
73607602 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73607667 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73607681 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73607677 original size:46 final size:46
Alignment explanation
Indices: 73607502--73607677 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
73607492 TGTAACCCGC
* * *
73607502 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
73607548 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
73607598 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
73607641 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
73607678 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73615171 original size:93 final size:93
Alignment explanation
Indices: 73615059--73615230 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
73615049 CGCCCATAAG
* * *
73615059 CGAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCATCCATAAGTGAAGTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCGA-ACATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
73615123 AATGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
73615152 CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73615217 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
73615231 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 72 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:73615225 original size:46 final size:47
Alignment explanation
Indices: 73615052--73615225 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 47
73615042 TGTAACCCGC
* * *
73615052 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-AGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
* * * * *
73615098 CCATAAGTGAAGTCGGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GA-GAC-A-TTCGCAT
*
73615148 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGA-ACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
*
73615191 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
73615226 GATGCTCAAC
Statistics
Matches: 104, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.57
47 24 0.23
48 3 0.03
49 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGAGACATTCGCAT
Found at i:73616912 original size:29 final size:27
Alignment explanation
Indices: 73616894--73616963 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
73616884 ATATTAAGTC
73616894 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
73616921 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
73616949 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
73616964 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:73616957 original size:28 final size:28
Alignment explanation
Indices: 73616894--73616991 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
73616884 ATATTAAGTC
*
73616894 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
73616921 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
73616949 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
73616978 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73616992 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:73622005 original size:20 final size:20
Alignment explanation
Indices: 73621980--73622018 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
73621970 AGGGACTAAA
*
73621980 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTGTAAAATTTG
*
73622000 ATGAAAAATTTTAAAATTT
1 ATGAAAAATTGTAAAATTT
73622019 AATGGATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (20 bp):
ATGAAAAATTGTAAAATTTG
Found at i:73623011 original size:47 final size:47
Alignment explanation
Indices: 73622921--73623021 Score: 114
Period size: 47 Copynumber: 2.1 Consensus size: 47
73622911 ACCAACACAC
* * * * *
73622921 TAGTACGGCACTCAATGCCTCATCGGCTTTACTGAAGTAAATAGTAA
1 TAGTACGGCACTCAATACCTCATCGGATTGACTAAAGTAAATAGCAA
* * *
73622968 TAGTACGGTACTCAGTACCTCATCGGATTGGACTAAAGT-AATAGCAG
1 TAGTACGGCACTCAATACCTCATCGGATT-GACTAAAGTAAATAGCAA
73623015 TAGTACG
1 TAGTACG
73623022 ACACACATGG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
47 38 0.84
48 7 0.16
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (47 bp):
TAGTACGGCACTCAATACCTCATCGGATTGACTAAAGTAAATAGCAA
Found at i:73624193 original size:12 final size:12
Alignment explanation
Indices: 73624176--73624209 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
73624166 AAAACCTTAG
73624176 TTTTTCCTTTTC
1 TTTTTCCTTTTC
73624188 TTTTT-CTTTTC
1 TTTTTCCTTTTC
73624199 TTCTTTCCTTT
1 TT-TTTCCTTT
73624210 CTCCCTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 8 0.40
12 8 0.40
13 4 0.20
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTTCCTTTTC
Found at i:73624301 original size:3 final size:3
Alignment explanation
Indices: 73624293--73624347 Score: 69
Period size: 3 Copynumber: 18.7 Consensus size: 3
73624283 ATATATTAGT
* *
73624293 TAA TAA TAA TAT TAA TAA TAA TAA TAA TACA TTA TAA TAA T-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
73624338 T-A TAA TAA TA
1 TAA TAA TAA TA
73624348 TTTAATTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 4 0.09
3 39 0.87
4 2 0.04
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:73624331 original size:13 final size:13
Alignment explanation
Indices: 73624313--73624347 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
73624303 ATTAATAATA
*
73624313 ATAATAATACATT
1 ATAATAATACAAT
*
73624326 ATAATAATATAAT
1 ATAATAATACAAT
73624339 ATAATAATA
1 ATAATAATA
73624348 TTTAATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (13 bp):
ATAATAATACAAT
Found at i:73624511 original size:24 final size:23
Alignment explanation
Indices: 73624461--73624513 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 23
73624451 TTGTCTTCAT
73624461 TTTAATAATTTAATATAAAACTA
1 TTTAATAATTTAATATAAAACTA
*
73624484 --TAATAATTATAATA-AATATCTA
1 TTTAATAATT-TAATATAA-AACTA
73624506 TTTAATAA
1 TTTAATAA
73624514 AAAATACATA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 10 0.40
22 9 0.36
24 6 0.24
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
TTTAATAATTTAATATAAAACTA
Found at i:73628210 original size:36 final size:36
Alignment explanation
Indices: 73628167--73628238 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
73628157 AAATAAAAAG
73628167 ATAGAAAATTAATGAAGCCTTATTACATAATTTAAA
1 ATAGAAAATTAATGAAGCCTTATTACATAATTTAAA
*
73628203 ATAGAAAATTAATGAGGCCTTATTACATAATTTAAA
1 ATAGAAAATTAATGAAGCCTTATTACATAATTTAAA
73628239 CCCAAAATGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.33
Consensus pattern (36 bp):
ATAGAAAATTAATGAAGCCTTATTACATAATTTAAA
Found at i:73628636 original size:27 final size:28
Alignment explanation
Indices: 73628613--73628678 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
73628603 TGTAAAGCTG
*
73628613 CCAGTAACAGTA-TCTGTGGCAAAGCCA
1 CCAGTAACAGTATTATGTGGCAAAGCCA
*
73628640 CCAGTAATAGTATTATGTGGCAAAGCCA
1 CCAGTAACAGTATTATGTGGCAAAGCCA
73628668 CCAGT-ACAGTA
1 CCAGTAACAGTA
73628679 CACTTACTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
27 16 0.46
28 19 0.54
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (28 bp):
CCAGTAACAGTATTATGTGGCAAAGCCA
Found at i:73640356 original size:16 final size:17
Alignment explanation
Indices: 73640317--73640348 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
73640307 GATATTTCTA
73640317 TTTAATTATTTATCATC
1 TTTAATTATTTATCATC
73640334 TTTAATTATTT-TCAT
1 TTTAATTATTTATCAT
73640349 TTCTAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTAATTATTTATCATC
Found at i:73645456 original size:13 final size:13
Alignment explanation
Indices: 73645438--73645463 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73645428 ATTACAACAG
73645438 TTAACAAGACAAT
1 TTAACAAGACAAT
73645451 TTAACAAGACAAT
1 TTAACAAGACAAT
73645464 AATAAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (13 bp):
TTAACAAGACAAT
Found at i:73650019 original size:50 final size:50
Alignment explanation
Indices: 73649944--73650182 Score: 258
Period size: 50 Copynumber: 4.9 Consensus size: 50
73649934 TGATGCTAGG
* * *
73649944 GAGATATGATAGCTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
*
73649994 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGG-CT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * *
73650042 -TGATATGTG-TC-AGTGTAAGACCATGTGTGGGACATGGCATCGGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTC
* * * * *
73650089 GATAGATGAGAGCCAGTGTAAGACCATGCCTGAGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
* * * *
73650139 GATATACGAGAG-TCAGTGTAAGACCATGCCTGAGACATGGCATC
1 GAGATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATC
73650183 AACTTTGATG
Statistics
Matches: 161, Mismatches: 20, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
45 30 0.19
46 1 0.01
47 8 0.05
48 5 0.03
49 4 0.02
50 113 0.70
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
Found at i:73650062 original size:45 final size:48
Alignment explanation
Indices: 73649945--73650231 Score: 237
Period size: 50 Copynumber: 5.9 Consensus size: 48
73649935 GATGCTAGGG
* * *
73649945 AGATATGATAGCTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTC
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTC
*
73649994 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGACATCGGCT-
1 -AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTC
* * * * *
73650042 TGATATGTG-TC-AGTGTAAGACCATGTGTGGGACATGGCATCGGCAC
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTC
* * * *
73650088 CGATAGATGAGAGCCAGTGTAAGACCATGCCTGAGACATGGCATCGGCCTC
1 AGAT--ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTC
* * ** *
73650139 -GATATACGAGAG-TCAGTGTAAGACCATGCCTGAGACATGGCATCAACTT
1 AGATAT--GAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCTC
* * * * *
73650188 TGATGTGCGAGC-AATGTAAGACCAT-TTTCGGGACATGGCATCGG
1 AGATATGAGAGCTAGTGTAAGACCATGTCT-GGGACATGGCATCGG
73650232 TACCTTACCC
Statistics
Matches: 196, Mismatches: 29, Indels: 27
0.78 0.12 0.11
Matches are distributed among these distances:
45 31 0.16
46 5 0.03
47 31 0.16
48 10 0.05
49 5 0.03
50 112 0.57
51 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTC
Found at i:73650098 original size:95 final size:97
Alignment explanation
Indices: 73649958--73650182 Score: 276
Period size: 95 Copynumber: 2.3 Consensus size: 97
73649948 TATGATAGCT
* * * * *
73649958 AGTGTAAGACCATGTCTGGGACATGGCGTTGGCCTCGAGATATGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAGATGAGAGCCAGTGTAAGACCATGC
* * *
73650023 CTGGGACATGACATCGG-CTTGATAT-GTGTC
66 CTGAGACATGACATCGGCCTCGATATAGAGTC
* *
73650053 AGTGTAAGACCATGTGTGGGACATGGCATCGGCAC-CGATAGATGAGAGCCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGAGATGAGAGCCAGTGTAAGACCATG
*
73650117 CCTGAGACATGGCATCGGCCTCGATATACGAGAGTC
65 CCTGAGACATGACATCGGCCTCGATAT---AGAGTC
* *
73650153 AGTGTAAGACCATGCCTGAGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
73650183 AACTTTGATG
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
95 71 0.65
96 8 0.07
100 31 0.28
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (97 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGAGATGAGAGCCAGTGTAAGACCATGC
CTGAGACATGACATCGGCCTCGATATAGAGTC
Found at i:73661621 original size:79 final size:81
Alignment explanation
Indices: 73661485--73661667 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
73661475 TCGAATGATG
* *
73661485 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
73661549 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
73661564 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
73661626 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
73661644 CCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
73661668 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:73661683 original size:40 final size:40
Alignment explanation
Indices: 73661485--73661688 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
73661475 TCGAATGATG
* * *
73661485 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
73661525 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
73661564 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
*
73661604 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * **
73661644 CCCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATA
73661684 TCCGG
1 TCCGG
73661689 TTAAATTCTG
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
39 37 0.26
40 97 0.68
41 8 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:73661691 original size:79 final size:79
Alignment explanation
Indices: 73661538--73661692 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
73661528 GGACTAAGAT
* **
73661538 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
73661603 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
73661617 CCGAAGGCATTTGTGCGAGTTACT-ATACCCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-CCCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
73661680 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
73661693 ATTCTGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:73677124 original size:43 final size:43
Alignment explanation
Indices: 73677029--73677147 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 43
73677019 CGAGATGTGG
* *
73677029 TTACATGTAAGACCATGTCTGGGACATTAGCATTGTATTGAGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATTGTAATGAGA
* * *
73677072 TTACGTGTAAAACCATGTCTGGGACATTGGCATTGTTAAT-CGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATTG-TAATGAGA
* * *
73677115 TTTCATGTAAGACCCTGTCTGGGACAGTGGCAT
1 TTACATGTAAGACCATGTCTGGGACATTGGCAT
73677148 CGATATATGA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 62 0.95
44 3 0.05
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACATTGGCATTGTAATGAGA
Found at i:73677171 original size:43 final size:43
Alignment explanation
Indices: 73677029--73677171 Score: 101
Period size: 43 Copynumber: 3.3 Consensus size: 43
73677019 CGAGATGTGG
* * * * * * *
73677029 TTACATGTAAGACCATGTCTGGGACATTAGCATTG-TATTGAGA
1 TTACATATAAGACCCTGTCTGGGACAGTGGCATCGATAAT-CGA
* * * * * * *
73677072 TTACGTGTAAAACCATGTCTGGGACATTGGCATTGTTAATCGA
1 TTACATATAAGACCCTGTCTGGGACAGTGGCATCGATAATCGA
* *
73677115 TTTCATGTAAGACCCTGTCTGGGACAGTGGCATCGATATAT-GA
1 TTACATATAAGACCCTGTCTGGGACAGTGGCATCGATA-ATCGA
*
73677158 TTACATATCAGACC
1 TTACATATAAGACC
73677172 ATATTCGGGA
Statistics
Matches: 83, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
43 78 0.94
44 5 0.06
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (43 bp):
TTACATATAAGACCCTGTCTGGGACAGTGGCATCGATAATCGA
Found at i:73681140 original size:53 final size:54
Alignment explanation
Indices: 73680959--73681164 Score: 234
Period size: 53 Copynumber: 3.8 Consensus size: 54
73680949 ATTAGGGTTT
* * * * *
73680959 AGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGCA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCA
* * * * * *
73681013 AGGAAATCATGTAAGACCATGTCAAGACATGGCACTGATAAACTACTATAAGGCA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCAATGGT-AAGTTCTATAAGGCA
* * * * *
73681068 AAGATCCCATGTAAGACCATGACAAGGCATGGCAATGGTGAGTTC-ATAAGGCA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCA
* *
73681121 AGGATACCACGTAAGACCATGTCATGACATGGCAATGGTAAGTT
1 AGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
73681165 TAAAAAGGAA
Statistics
Matches: 123, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 45 0.37
54 35 0.28
55 43 0.35
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
AGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGCA
Found at i:73693789 original size:9 final size:9
Alignment explanation
Indices: 73693777--73693833 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
73693767 TTTGATAAAC
73693777 ATGATATGT
1 ATGATATGT
*
73693786 ATGATATGCAC
1 ATGATATG--T
*
73693797 ATGACATGT
1 ATGATATGT
*
73693806 ATGATATGCAC
1 ATGATATG--T
73693817 ATGATATGT
1 ATGATATGT
73693826 ATGATATG
1 ATGATATG
73693834 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:73693800 original size:20 final size:20
Alignment explanation
Indices: 73693775--73693837 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
73693765 ATTTTGATAA
73693775 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
73693795 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
73693815 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
73693835 ACA
1 ACA
73693838 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:73694033 original size:24 final size:24
Alignment explanation
Indices: 73693891--73694020 Score: 210
Period size: 24 Copynumber: 5.4 Consensus size: 24
73693881 GAGGAAGTGC
73693891 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
73693915 AAAAGGGATTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73693939 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73693963 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
73693986 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
73694011 AAAAGAGGCT
1 AAAAG-GGCT
73694021 AGGCCTCCAT
Statistics
Matches: 100, Mismatches: 2, Indels: 8
0.91 0.02 0.07
Matches are distributed among these distances:
23 28 0.28
24 50 0.50
25 13 0.13
26 9 0.09
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:73694262 original size:31 final size:31
Alignment explanation
Indices: 73694227--73694290 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
73694217 CGTTTACAGT
*
73694227 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
**
73694258 AAAGGCTTCGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
73694289 AA
1 AA
73694291 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAAAATGA
Found at i:73707366 original size:46 final size:46
Alignment explanation
Indices: 73707313--73707581 Score: 259
Period size: 46 Copynumber: 5.8 Consensus size: 46
73707303 TATTTGGGCA
73707313 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
73707359 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
73707406 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
73707452 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-C--A-GAGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G
* * *
73707497 CATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
**
73707545 -CCTGAACTCGTTGAGTTGAGTCAAAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73707582 GCGGGTTACA
Statistics
Matches: 181, Mismatches: 23, Indels: 38
0.75 0.10 0.16
Matches are distributed among these distances:
42 3 0.02
43 7 0.04
44 3 0.02
45 5 0.03
46 90 0.50
47 58 0.32
48 3 0.02
49 3 0.02
50 6 0.03
51 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73707434 original size:47 final size:46
Alignment explanation
Indices: 73707359--73707528 Score: 193
Period size: 47 Copynumber: 3.7 Consensus size: 46
73707349 GATGCGAATG
*
73707359 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC-AGAGATGTAACTAGGCA
* *** * *
73707406 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG-GA-T-GCGAA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCAGAGATGTAACTAG-GCA
*
73707450 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTCCAGAGATGTAACTAGGCA
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTT-CAGAGATGTAACTAGGCA
*
73707499 TCCGAGCTCATTGAGTTGAGTCCGAGTTCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCA
73707529 CTTATGGATG
Statistics
Matches: 100, Mismatches: 16, Indels: 15
0.76 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 32 0.32
47 58 0.58
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCAGAGATGTAACTAGGCA
Found at i:73707573 original size:93 final size:93
Alignment explanation
Indices: 73707309--73707566 Score: 455
Period size: 93 Copynumber: 2.8 Consensus size: 93
73707299 AGGATATTTG
*
73707309 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
*
73707374 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCCAGAGATGTAACTA
*
73707402 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
73707467 TTGAGTCCGAGTTCCAGAGATGTAACTA
66 TTGAGTCCGAGTTCCAGAGATGTAACTA
* *
73707495 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAACTCGTTGA
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGA
73707559 GTTGAGTC
65 GTTGAGTC
73707567 AAAGTTCACT
Statistics
Matches: 158, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
92 2 0.01
93 156 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCCAGAGATGTAACTA
Found at i:73712952 original size:46 final size:44
Alignment explanation
Indices: 73712898--73713167 Score: 222
Period size: 46 Copynumber: 5.9 Consensus size: 44
73712888 ATATTTGGGC
73712898 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* *** * *
73712942 ATGTCCGAACTAGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* *
73712991 ATACGAGCAT-GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAAC-TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
*** * *
73713036 TATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* *
73713084 ATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * *
73713128 ACGCCTAAACTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 A-TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73713168 GCGGGTTACA
Statistics
Matches: 176, Mismatches: 32, Indels: 34
0.73 0.13 0.14
Matches are distributed among these distances:
43 2 0.01
44 6 0.03
45 4 0.02
46 93 0.53
47 61 0.35
48 3 0.02
49 5 0.03
50 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:73713054 original size:93 final size:93
Alignment explanation
Indices: 73712895--73713159 Score: 410
Period size: 93 Copynumber: 2.8 Consensus size: 93
73712885 AGGATATTTG
* * * *
73712895 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTAGTTGAG
1 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCCGAACTCGTTGAG
73712960 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
73712988 GGCATAC-GAGCAT-GTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCCGAACTCGTTG
1 GGCAT-CTGAGC-TCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCCGAACTCGTTG
73713051 AGTTGAGTCCGAGTTCGAGAGATGTAACTA
64 AGTTGAGTCCGAGTTCGAGAGATGTAACTA
** *
73713081 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-CGCCTAAACTCGTTGA
1 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCC-GAACTCGTTGA
*
73713145 GTTGAGTTCGAGTTC
65 GTTGAGTCCGAGTTC
73713160 ACTTATGGGC
Statistics
Matches: 160, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
92 4 0.03
93 154 0.96
94 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATATCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:73713097 original size:47 final size:46
Alignment explanation
Indices: 73712954--73713113 Score: 173
Period size: 47 Copynumber: 3.4 Consensus size: 46
73712944 GTCCGAACTA
73712954 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATACGAGCAT-
1 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCAT-CGAGC-TC
*** * * * ** *
73713001 GTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-ATATCCGAACTC
1 GTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCAT-CGAGCTC
73713047 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCTGAGCTC
1 GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATC-GAGCTC
73713094 GTTGAGTTGAGTCCGAGTTC
1 GTTGAGTTGAGTCCGAGTTC
73713114 ACTTATGGAT
Statistics
Matches: 89, Mismatches: 19, Indels: 10
0.75 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 34 0.38
47 54 0.61
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.29
Consensus pattern (46 bp):
GTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCATCGAGCTC
Found at i:73724311 original size:19 final size:17
Alignment explanation
Indices: 73724270--73724310 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
73724260 CACACGGGTA
73724270 GACACACGGGCGTGTGT
1 GACACACGGGCGTGTGT
73724287 GACACACGGGCGTGTGT
1 GACACACGGGCGTGTGT
73724304 GACACAC
1 GACACAC
73724311 AATCTTCCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.22, C:0.27, G:0.37, T:0.15
Consensus pattern (17 bp):
GACACACGGGCGTGTGT
Found at i:73726860 original size:48 final size:48
Alignment explanation
Indices: 73726785--73727053 Score: 352
Period size: 48 Copynumber: 5.7 Consensus size: 48
73726775 CACATGGTAG
* * * *
73726785 GATGCGAATGCCATATCCTAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
*
73726833 AATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
73726881 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* *
73726929 GATGCCAATGCCATGTCCTAGACATGGTTTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* * ** *
73726977 GATGCCAATG----G-CCCAG-CTATAGTCTTACACGAAATTACATATC
1 GATGCCAATGCCATGTCCCAGAC-ATGGTCTTACATGGGATCACATATC
* * *
73727020 AATTCCAAAGCCATGTCCCAGACATGGTCTTACA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACA
73727054 CGAGATCGCA
Statistics
Matches: 195, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
42 1 0.01
43 30 0.15
44 1 0.01
47 1 0.01
48 161 0.83
49 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:73734692 original size:40 final size:40
Alignment explanation
Indices: 73734634--73734713 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
73734624 TAATACATAG
**
73734634 AAAATATAACACGTAGTAATCTTCATAGCTTAGTAAGCTC
1 AAAATATAACACAAAGTAATCTTCATAGCTTAGTAAGCTC
73734674 AAAATATAACACAAAGTAATCTTCATAGCTTAGTAAGCTC
1 AAAATATAACACAAAGTAATCTTCATAGCTTAGTAAGCTC
73734714 GTATGTAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.29
Consensus pattern (40 bp):
AAAATATAACACAAAGTAATCTTCATAGCTTAGTAAGCTC
Found at i:73735112 original size:77 final size:77
Alignment explanation
Indices: 73735013--73735220 Score: 310
Period size: 77 Copynumber: 2.7 Consensus size: 77
73735003 GAACTATTTC
* **
73735013 CATGGCCCGAAGCCAAAACATCCGATATGCATGGCCCGAAGCCAAATCGGTATAACTCGCACCCG
1 CATGGCCAGAAGCCAACTCATCCGATATGCATGGCCCGAAGCCAAATCGGTATAACTCGCACCCG
73735078 AAGTGCTAATAT
66 AAGTGCTAATAT
* *** * *
73735090 CATGGCCAGCAGCCAACTCATCCGATATGCATGGTATGAAGCCAAATTGGTATAACTCGTACCCG
1 CATGGCCAGAAGCCAACTCATCCGATATGCATGGCCCGAAGCCAAATCGGTATAACTCGCACCCG
73735155 AAGTGCTAATAT
66 AAGTGCTAATAT
*
73735167 CATGGCCCA-AAGCCAACTCATCTGATATGCATGGCCCGAAGCCAAATCGGTATA
1 CATGG-CCAGAAGCCAACTCATCCGATATGCATGGCCCGAAGCCAAATCGGTATA
73735221 TCATCTTATA
Statistics
Matches: 115, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
77 112 0.97
78 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.20
Consensus pattern (77 bp):
CATGGCCAGAAGCCAACTCATCCGATATGCATGGCCCGAAGCCAAATCGGTATAACTCGCACCCG
AAGTGCTAATAT
Found at i:73741269 original size:24 final size:24
Alignment explanation
Indices: 73741191--73741262 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 24
73741181 AGACTCACTG
** *
73741191 CAGCTCGTATGAGCTTATCAATATAT
1 CAGCTCGTATGAGCTTA-CTGT-TCT
73741217 CAGCTCGTATGAGCTTACTGTTCT
1 CAGCTCGTATGAGCTTACTGTTCT
73741241 CAGCTCGTCA-GAGCTTACTGTT
1 CAGCTCGT-ATGAGCTTACTGTT
73741263 TCCAGCTTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
24 22 0.52
25 3 0.07
26 17 0.40
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (24 bp):
CAGCTCGTATGAGCTTACTGTTCT
Found at i:73752428 original size:40 final size:40
Alignment explanation
Indices: 73752380--73752545 Score: 280
Period size: 40 Copynumber: 4.2 Consensus size: 40
73752370 GGACTAAGAT
73752380 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
73752420 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
73752460 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
** * *
73752500 CCGAAGGCATTTGTGCGAGTTGTTATATCC-AGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
73752539 CCGAAGG
1 CCGAAGG
73752546 TACTTGGGTT
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 14 0.12
40 106 0.88
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:73760512 original size:40 final size:40
Alignment explanation
Indices: 73760464--73760629 Score: 280
Period size: 40 Copynumber: 4.2 Consensus size: 40
73760454 GGACTAAGAT
73760464 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
73760504 CCGAAGGCATTTGTGCGAGTTACTATATCTGGGCTAAGTT
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
73760544 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
73760584 CCGAAGGCATTTGTGCAAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
73760623 CCGAAGG
1 CCGAAGG
73760630 TACTTGGGTT
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 15 0.13
40 104 0.87
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:73765007 original size:28 final size:28
Alignment explanation
Indices: 73764967--73765023 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
73764957 GAATCTTAAG
73764967 GAATTTACTATAATTTGTATAACTACTA
1 GAATTTACTATAATTTGTATAACTACTA
73764995 GAATTTACTATAATTTGTATAACTACTA
1 GAATTTACTATAATTTGTATAACTACTA
73765023 G
1 G
73765024 TTTGCTTGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.42
Consensus pattern (28 bp):
GAATTTACTATAATTTGTATAACTACTA
Found at i:73773245 original size:42 final size:43
Alignment explanation
Indices: 73773147--73773300 Score: 149
Period size: 42 Copynumber: 3.6 Consensus size: 43
73773137 GAATTAAGAA
* * * *
73773147 ATCCAAGCTCGTTGAGCGGTCTGAGTTTGTGATAT-TGTGAGA
1 ATCCAAGCTCGTTGAGTGGTCCGAGTTTGCGATATATGTGAGC
* * *
73773189 ATCCGAA-CTTGTTGAGTGGTCCAAGTTTGCGATATATGAG-GC
1 ATCC-AAGCTCGTTGAGTGGTCCGAGTTTGCGATATATGTGAGC
*
73773231 ATCCAAGCTCGTTGAGTGGCCCGAG-TT-C-ATTATGGATGTGAGC
1 ATCCAAGCTCGTTGAGTGGTCCGAGTTTGCGA-TAT--ATGTGAGC
*
73773274 ATCCGAGCTCGTTGAGTGGTCCGAGTT
1 ATCCAAGCTCGTTGAGTGGTCCGAGTT
73773301 CATTATGGAT
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
39 1 0.01
40 4 0.04
41 4 0.04
42 51 0.56
43 30 0.33
44 1 0.01
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.31
Consensus pattern (43 bp):
ATCCAAGCTCGTTGAGTGGTCCGAGTTTGCGATATATGTGAGC
Found at i:73773283 original size:43 final size:43
Alignment explanation
Indices: 73773229--73773313 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
73773219 GATATATGAG
73773229 GCATCCAAGCTCGTTGAGTGGCCCGAGTTCATTATGGATGTGA
1 GCATCCAAGCTCGTTGAGTGGCCCGAGTTCATTATGGATGTGA
* *
73773272 GCATCCGAGCTCGTTGAGTGGTCCGAGTTCATTATGGATGTG
1 GCATCCAAGCTCGTTGAGTGGCCCGAGTTCATTATGGATGTG
73773314 TTACATGTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.19, C:0.20, G:0.32, T:0.29
Consensus pattern (43 bp):
GCATCCAAGCTCGTTGAGTGGCCCGAGTTCATTATGGATGTGA
Found at i:73775752 original size:13 final size:13
Alignment explanation
Indices: 73775734--73775761 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
73775724 AAAATACATT
73775734 TATTAATTAAAAA
1 TATTAATTAAAAA
73775747 TATTAATTAAAAA
1 TATTAATTAAAAA
73775760 TA
1 TA
73775762 AAAAAGCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TATTAATTAAAAA
Found at i:73782368 original size:31 final size:31
Alignment explanation
Indices: 73782324--73782391 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
73782314 AAAATTGTAA
* * *
73782324 TTTAAGCACTGTTATTATATATTTTTATCAT
1 TTTAATCACTGTTATTATACACTTTTATCAT
* *
73782355 TTTAATCAGTGTTATTATACACTTTTATTAT
1 TTTAATCACTGTTATTATACACTTTTATCAT
73782386 TTTAAT
1 TTTAAT
73782392 TACTCGATGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.56
Consensus pattern (31 bp):
TTTAATCACTGTTATTATACACTTTTATCAT
Found at i:73783856 original size:26 final size:27
Alignment explanation
Indices: 73783809--73783865 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
73783799 AAGGCCAATC
* *
73783809 TTTCAAAGAATGCCACAGAGGCTTCCA
1 TTTCAAAGAATGCCAAAAAGGCTTCCA
* *
73783836 TTTCAAA-TATGCCAAAAAGGCTTTCA
1 TTTCAAAGAATGCCAAAAAGGCTTCCA
73783862 TTTC
1 TTTC
73783866 CTGGAGTGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (27 bp):
TTTCAAAGAATGCCAAAAAGGCTTCCA
Found at i:73786817 original size:38 final size:38
Alignment explanation
Indices: 73786736--73786964 Score: 350
Period size: 38 Copynumber: 6.0 Consensus size: 38
73786726 GAATCCAGTC
* * * *
73786736 ACCAGCACAAAGCCTGCAGGACTTTAAGCTCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATATT
*
73786776 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
* *
73786814 ACCAGCATGAAGCCTGCGGGATTTAACCCAGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
73786852 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
73786890 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
* * *
73786928 ACCAGCACGAAGCTTGCGGGACTTAACTCGGATATAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAT
73786965 ATCGACTGAT
Statistics
Matches: 177, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
38 153 0.86
39 5 0.03
40 19 0.11
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
Found at i:73793070 original size:28 final size:28
Alignment explanation
Indices: 73793004--73793131 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
73792994 CATGAGATTG
* * **
73793004 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
73793033 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73793061 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
73793090 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73793118 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
73793132 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73793093 original size:57 final size:57
Alignment explanation
Indices: 73793004--73793131 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
73792994 CATGAGATTG
*
73793004 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
73793061 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
73793118 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
73793132 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:73812216 original size:21 final size:21
Alignment explanation
Indices: 73812175--73812216 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
73812165 TTTTCTCGAA
* *
73812175 TCGAATCGAGTGAGATGAAAT
1 TCGAATCGAATGAGATCAAAT
73812196 TCGAATCGAATCGA-ATCAAAT
1 TCGAATCGAAT-GAGATCAAAT
73812217 ATATTTGTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.24
Consensus pattern (21 bp):
TCGAATCGAATGAGATCAAAT
Found at i:73813140 original size:9 final size:9
Alignment explanation
Indices: 73813122--73813158 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
73813112 TATAGTTTGA
73813122 TATTCGAAT
1 TATTCGAAT
*
73813131 TATTCAAAT
1 TATTCGAAT
*
73813140 TATTCGAGT
1 TATTCGAAT
73813149 TATTCGAAT
1 TATTCGAAT
73813158 T
1 T
73813159 TGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:73813643 original size:41 final size:41
Alignment explanation
Indices: 73813598--73813697 Score: 182
Period size: 41 Copynumber: 2.4 Consensus size: 41
73813588 TAGACGGGCT
*
73813598 TGCTCACACAAGCTGTCAGTCAAGAAGTAGCTGCACAGTAC
1 TGCTCACACAAGCTGTCAGTCAAGAAGTAGCTACACAGTAC
73813639 TGCTCACACAAGCTGTCAGTCAAGAAGTAGCTACACAGTAC
1 TGCTCACACAAGCTGTCAGTCAAGAAGTAGCTACACAGTAC
*
73813680 TGCTTACACAAGCTGTCA
1 TGCTCACACAAGCTGTCA
73813698 AGTATACTCA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (41 bp):
TGCTCACACAAGCTGTCAGTCAAGAAGTAGCTACACAGTAC
Found at i:73821379 original size:40 final size:40
Alignment explanation
Indices: 73821310--73821527 Score: 309
Period size: 40 Copynumber: 5.5 Consensus size: 40
73821300 AACCCAAGTA
* * * *
73821310 CCTTCGGGATTTAG-CCGGATATAGCAACTCACACAAATG
1 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
73821349 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
73821389 CCTTCG-GAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGAG-ACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73821429 CCTTC-AGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGA-GACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
73821469 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73821509 CCTTC-AGATCTTAGTCCGG
1 CCTTCGAGA-CTTAGCCCGG
73821528 TTATCATTCG
Statistics
Matches: 165, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
39 15 0.09
40 149 0.90
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73829566 original size:40 final size:40
Alignment explanation
Indices: 73829394--73829559 Score: 280
Period size: 40 Copynumber: 4.2 Consensus size: 40
73829384 AACCCAAGTA
* * *
73829394 CCTTCGGGATTTAG-CCGGATATAGCAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73829433 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73829473 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73829513 CCTTCGGGACTTAGCCCGGATATTGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73829553 CCTTCGG
1 CCTTCGG
73829560 ATCTTAGTCC
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 13 0.11
40 107 0.89
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73840765 original size:46 final size:46
Alignment explanation
Indices: 73840715--73840890 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
73840705 TGATTGAGCA
73840715 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
73840761 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
73840806 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
73840854 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73840891 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:73840871 original size:93 final size:93
Alignment explanation
Indices: 73840712--73840883 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
73840702 GGATGATTGA
*
73840712 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
73840777 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
73840805 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
73840869 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
73840884 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:73846911 original size:45 final size:44
Alignment explanation
Indices: 73846862--73847018 Score: 148
Period size: 43 Copynumber: 3.6 Consensus size: 44
73846852 TGTGTTCTCG
*
73846862 TGTAAGACCACGTCTGGGACATTGGCAAT-GATATTTGTGATTACG
1 TGTAAGACCACGTCTGGGACATTGGC-ATCGATA-TTGTGATTACA
* * *
73846907 TGTAAGACCATGTCTAGGACATCGGCATCG-TATT-TGATT-CA
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTGTGATTACA
* * *
73846948 TGTAAGACC-CTGTCTGGGATAGTGGCATCGATA-TGAGA-TAGCA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTGTGATTA-CA
**
73846991 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
73847019 TGTTTGATAT
Statistics
Matches: 93, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
41 27 0.29
42 9 0.10
43 28 0.30
44 5 0.05
45 24 0.26
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.29
Consensus pattern (44 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTGTGATTACA
Found at i:73850277 original size:79 final size:80
Alignment explanation
Indices: 73850174--73850358 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 80
73850164 GCTACTCGTT
* *
73850174 CAAAGGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCG-GATCTTAACCC
* *
73850237 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* **
73850254 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 -CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
73850318 ATATAGTCACTTAGCA
65 ATATAGTAACTTAGCA
73850334 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
73850359 CATCATTCGA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 2 0.02
79 61 0.67
80 25 0.27
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:73850358 original size:40 final size:40
Alignment explanation
Indices: 73850155--73850358 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
73850145 CGGAATTTAA
** * *
73850155 CCGGATATAGCT-ACTCGTTCAAAGGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
73850195 CCGGTTATAGTAACTCGCACAAATGCCTTCGAGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73850235 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
73850274 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
73850314 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
73850354 CCGGA
1 CCGGA
73850359 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:73857833 original size:47 final size:47
Alignment explanation
Indices: 73857779--73857972 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
73857769 TTAGGATTTT
** * *
73857779 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
73857826 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73857873 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
73857920 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
73857967 ATGTGA
1 ATGTGA
73857973 AATATGTATG
Statistics
Matches: 135, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 135 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:73857879 original size:22 final size:22
Alignment explanation
Indices: 73857808--73857926 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
73857798 GTATATATGA
73857808 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
73857830 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
73857855 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
73857877 GATGAATGTG-AGCAT-G-CATATGTGT
1 GAT-AA-G-GCCGAATGGCCA-A--TGT
73857902 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
73857924 GAT
1 GAT
73857927 GAATATGAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 20 0.28
23 17 0.24
24 17 0.24
25 17 0.24
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:73858287 original size:37 final size:37
Alignment explanation
Indices: 73858179--73858287 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
73858169 GGAAATATAT
*
73858179 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
73858216 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
73858253 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
73858288 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:73865851 original size:56 final size:56
Alignment explanation
Indices: 73865765--73865900 Score: 245
Period size: 56 Copynumber: 2.4 Consensus size: 56
73865755 ACCATGGCAT
*
73865765 TGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTC
1 TGATATATGTGTGCGAGTAAGACCAAGTTTAATACGTTGGCATCGATATGTGACTC
*
73865821 TGATATATGTGTGCAAGTAAGACCAAGTTTAATACGTTGGCATCGATATGTGACTC
1 TGATATATGTGTGCGAGTAAGACCAAGTTTAATACGTTGGCATCGATATGTGACTC
*
73865877 CGATATATGTGTGCGAGTAAGACC
1 TGATATATGTGTGCGAGTAAGACC
73865901 CTGTCTGGGA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 76 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (56 bp):
TGATATATGTGTGCGAGTAAGACCAAGTTTAATACGTTGGCATCGATATGTGACTC
Found at i:73869298 original size:19 final size:19
Alignment explanation
Indices: 73869276--73869333 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
73869266 AATTTAAGTA
73869276 ATATAATGTTATTTATATG
1 ATATAATGTTATTTATATG
* *
73869295 ATATGATG--A-TTATTATC
1 ATATAATGTTATTTA-TATG
73869312 AT-TAATGTTATTTATATG
1 ATATAATGTTATTTATATG
73869330 ATAT
1 ATAT
73869334 GAAGATTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
16 7 0.23
17 6 0.20
18 6 0.20
19 11 0.37
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (19 bp):
ATATAATGTTATTTATATG
Found at i:73869325 original size:35 final size:35
Alignment explanation
Indices: 73869279--73869345 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
73869269 TTAAGTAATA
*
73869279 TAATGTTATTTATATGATATGATGATTATTATCAT
1 TAATGTTATTTATATGATATGAAGATTATTATCAT
*
73869314 TAATGTTATTTATATGATATGAAGATTGTTAT
1 TAATGTTATTTATATGATATGAAGATTATTAT
73869346 TATGAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (35 bp):
TAATGTTATTTATATGATATGAAGATTATTATCAT
Found at i:73869737 original size:49 final size:50
Alignment explanation
Indices: 73869666--73869912 Score: 237
Period size: 49 Copynumber: 5.0 Consensus size: 50
73869656 AGCTATTGTG
* * * *
73869666 AGGTCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGCACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * * *
73869716 -GGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * * * *
73869766 CGATCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTATCAAATAGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
73869816 AGGTCACGTGTATAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * *
73869866 -GGTCGCATGTGTAGTACTAAGTGCAGACTACTATGCGTATCAGATAG
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
73869913 CTTCAGCTAC
Statistics
Matches: 155, Mismatches: 40, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
49 74 0.48
50 46 0.30
51 35 0.23
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:73869897 original size:99 final size:100
Alignment explanation
Indices: 73869669--73869912 Score: 276
Period size: 100 Copynumber: 2.5 Consensus size: 100
73869659 TATTGTGAGG
* * * * * * *
73869669 TCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGCACCAGATTGTTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTGGTCACATGTATAGTACT
* * *
73869734 AAGTGTAGGCTACTATGCGTACCTGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCGGATAACTTCGA
* * * *
73869769 TCACGTGTGTAGTACTAACTGCAGGCTACTACGTGTATCAAATAGTTAGGTCACGTGTATAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTT-GGTCACATGTATAGTAC
* * *
73869834 TAAGTGCAGGCTATTACGTGTACCGGATAA-TT-GG
65 TAAGTGCAGGCTACTACGCGTACCGGATAACTTCGA
* * * *
73869868 TCGCATGTGTAGTACTAAGTGCAGACTACTATGCGTATCAGATAG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAG
73869913 CTTCAGCTAC
Statistics
Matches: 121, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
99 39 0.32
100 43 0.36
101 39 0.32
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTGGTCACATGTATAGTACT
AAGTGCAGGCTACTACGCGTACCGGATAACTTCGA
Found at i:73872685 original size:16 final size:15
Alignment explanation
Indices: 73872654--73872685 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
73872644 TCGTATCATT
73872654 GATTTCTTTATCTTG
1 GATTTCTTTATCTTG
73872669 GATTTCTTTATTCTTG
1 GATTTCTTTA-TCTTG
73872685 G
1 G
73872686 CTTCTCTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.12, C:0.12, G:0.16, T:0.59
Consensus pattern (15 bp):
GATTTCTTTATCTTG
Found at i:73875004 original size:19 final size:19
Alignment explanation
Indices: 73874982--73875039 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
73874972 AATTTAAGTA
73874982 ATATAATGTTATTTATATG
1 ATATAATGTTATTTATATG
* *
73875001 ATATGATG--A-TTATTATC
1 ATATAATGTTATTTA-TATG
73875018 AT-TAATGTTATTTATATG
1 ATATAATGTTATTTATATG
73875036 ATAT
1 ATAT
73875040 GAAGATTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
16 7 0.23
17 6 0.20
18 6 0.20
19 11 0.37
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (19 bp):
ATATAATGTTATTTATATG
Found at i:73875024 original size:35 final size:35
Alignment explanation
Indices: 73874985--73875051 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
73874975 TTAAGTAATA
*
73874985 TAATGTTATTTATATGATATGATGATTATTATCAT
1 TAATGTTATTTATATGATATGAAGATTATTATCAT
*
73875020 TAATGTTATTTATATGATATGAAGATTGTTAT
1 TAATGTTATTTATATGATATGAAGATTATTAT
73875052 TATGAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.51
Consensus pattern (35 bp):
TAATGTTATTTATATGATATGAAGATTATTATCAT
Found at i:73888237 original size:18 final size:17
Alignment explanation
Indices: 73888214--73888251 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
73888204 ATTCTTATGA
73888214 ATTTTATTATGTAATTTT
1 ATTTTATTAT-TAATTTT
*
73888232 ATTTTATTATTATTTTT
1 ATTTTATTATTAATTTT
73888249 ATT
1 ATT
73888252 CAAGTTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
ATTTTATTATTAATTTT
Found at i:73889971 original size:8 final size:8
Alignment explanation
Indices: 73889958--73890004 Score: 60
Period size: 8 Copynumber: 6.0 Consensus size: 8
73889948 AATGAGTTTA
73889958 CTATTTTG
1 CTATTTTG
*
73889966 CTATTTTA
1 CTATTTTG
73889974 CTATTTTG
1 CTATTTTG
73889982 CTATTTTG
1 CTATTTTG
* *
73889990 -TACTTTA
1 CTATTTTG
73889997 CTATTTTG
1 CTATTTTG
73890005 GAAAATGATT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
7 5 0.16
8 27 0.84
ACGTcount: A:0.17, C:0.13, G:0.09, T:0.62
Consensus pattern (8 bp):
CTATTTTG
Found at i:73889973 original size:16 final size:16
Alignment explanation
Indices: 73889954--73889988 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
73889944 ATCAAATGAG
73889954 TTTACTATTTTGCTAT
1 TTTACTATTTTGCTAT
73889970 TTTACTATTTTGCTAT
1 TTTACTATTTTGCTAT
73889986 TTT
1 TTT
73889989 GTACTTTACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.66
Consensus pattern (16 bp):
TTTACTATTTTGCTAT
Found at i:73890000 original size:23 final size:24
Alignment explanation
Indices: 73889958--73890004 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
73889948 AATGAGTTTA
*
73889958 CTATTTTGCTATTTTACTATTTTG
1 CTATTTTGCTACTTTACTATTTTG
73889982 CTATTTTG-TACTTTACTATTTTG
1 CTATTTTGCTACTTTACTATTTTG
73890005 GAAAATGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.17, C:0.13, G:0.09, T:0.62
Consensus pattern (24 bp):
CTATTTTGCTACTTTACTATTTTG
Found at i:73890850 original size:47 final size:48
Alignment explanation
Indices: 73890666--73890890 Score: 157
Period size: 47 Copynumber: 4.8 Consensus size: 48
73890656 TCATTTGTGA
* * * * *
73890666 GAGCTAGTGTAAGACCATGCCTGGGACATGGCATCGG-TATTGAGACGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCTTCGGCTA-CGAGA-TAT
* * * * * *
73890714 GTGCTAGTGTAAGA-CATTTCTGGGACAT-GCATCAGCCT-CGATA-AGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCTTC-GGCTACGAGATA-T
* *
73890760 AAGCTAGTGTAAGA-CATGTCTGGGACAT-GCGTT-GGCTACGAGATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGC-TTCGGCTACGAGAT-AT
* * *
73890807 -AGTCAGTGTAAGACCATGTCTGGGATATGGCTTCGGCT-TGAGATAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCTTCGGCTACGAGATAT
* *
73890853 GAGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCTTCGGC
73890891 ACCTTACCCC
Statistics
Matches: 145, Mismatches: 20, Indels: 25
0.76 0.11 0.13
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 52 0.36
47 68 0.47
48 21 0.14
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCTTCGGCTACGAGATAT
Found at i:73896414 original size:13 final size:13
Alignment explanation
Indices: 73896396--73896421 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73896386 GAGGAGAGAA
73896396 AAGTCAAGAAGTG
1 AAGTCAAGAAGTG
73896409 AAGTCAAGAAGTG
1 AAGTCAAGAAGTG
73896422 CTCCATTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.31, T:0.15
Consensus pattern (13 bp):
AAGTCAAGAAGTG
Found at i:73901246 original size:46 final size:48
Alignment explanation
Indices: 73901160--73901328 Score: 131
Period size: 46 Copynumber: 3.6 Consensus size: 48
73901150 TTTGTGAGAG
* *
73901160 CTAGTGTAAGACCATGTTTGGGACATGGCATCGGTATTGAGACGAGTA
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTA
* *
73901208 CTAGTGTAAGA-CGTGTCTGGGACAT-GCATCGGCCTTGAGAC--GTAA
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGT-A
* * * * * *
73901253 GCCAGTGTAAGA-CATGTCTGTGAC-TTGCATTGGC-TACGAGATGCTAGT-
1 -CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGA--CGAGTA
*
73901301 C-AGTGTAAGACCATGTTTGGGACATGGC
1 CTAGTGTAAGACCATGTCTGGGACATGGC
73901329 TTAGACTTGA
Statistics
Matches: 99, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
44 2 0.02
45 3 0.03
46 54 0.55
47 23 0.23
48 15 0.15
50 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGTA
Found at i:73903712 original size:25 final size:24
Alignment explanation
Indices: 73903667--73903717 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
73903657 GAAACACTCC
*
73903667 AAAGACAAAAAAAGTGCAAGAAAGA
1 AAAGACAAAAAAAGAGCAAG-AAGA
*
73903692 AAAG-CAAAAAAAGGAGGAAGAAGA
1 AAAGACAAAAAAA-GAGCAAGAAGA
73903716 AA
1 AA
73903718 TATCGTGTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 14 0.61
25 9 0.39
ACGTcount: A:0.69, C:0.06, G:0.24, T:0.02
Consensus pattern (24 bp):
AAAGACAAAAAAAGAGCAAGAAGA
Found at i:73906614 original size:28 final size:29
Alignment explanation
Indices: 73906577--73906650 Score: 96
Period size: 28 Copynumber: 2.6 Consensus size: 29
73906567 AAGTCTACAT
* *
73906577 ACATGCATATGGCCCATTAGGC-CCAATC
1 ACATTCATATGGCCCATTAGGCTCAAATC
** *
73906605 TTATTCATATGGCCCATTAGGCTTAAATC
1 ACATTCATATGGCCCATTAGGCTCAAATC
73906634 ACATTCATATGGCCCAT
1 ACATTCATATGGCCCAT
73906651 CTGGCCTGAA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
28 19 0.50
29 19 0.50
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCTCAAATC
Found at i:73906662 original size:29 final size:29
Alignment explanation
Indices: 73906577--73906667 Score: 98
Period size: 29 Copynumber: 3.2 Consensus size: 29
73906567 AAGTCTACAT
* *
73906577 ACATGCATATGGCCCATTAGGCC-CAATC
1 ACATTCATATGGCCCATTAGGCCTAAATC
** *
73906605 TTATTCATATGGCCCATTAGGCTTAAATC
1 ACATTCATATGGCCCATTAGGCCTAAATC
*
73906634 ACATTCATATGGCCCATCT-GGCCTGAATC
1 ACATTCATATGGCCCAT-TAGGCCTAAATC
73906663 A-ATTC
1 ACATTC
73906668 CAAGACATGT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
28 23 0.44
29 28 0.54
30 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.30
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCTAAATC
Found at i:73906915 original size:16 final size:16
Alignment explanation
Indices: 73906890--73906920 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73906880 AACTTTCAGT
73906890 TTTTCAGCATTTTGAC
1 TTTTCAGCATTTTGAC
*
73906906 TTTTCGGCATTTTGA
1 TTTTCAGCATTTTGA
73906921 GATTTACCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (16 bp):
TTTTCAGCATTTTGAC
Found at i:73915803 original size:35 final size:35
Alignment explanation
Indices: 73915764--73915835 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
73915754 CATCTCCGGA
*
73915764 GCTTGGAAAATATGGAAAGTA-ATCTTCAAAGATAT
1 GCTTGGAAAATATGG-AAGGAGATCTTCAAAGATAT
73915799 GCTTGGAAAATATGGAAGGAGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAGGAGATCTTCAAAGATAT
73915834 GC
1 GC
73915836 GATCTTAGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 4 0.11
35 31 0.89
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAGGAGATCTTCAAAGATAT
Found at i:73921032 original size:35 final size:35
Alignment explanation
Indices: 73920993--73921064 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
73920983 CATCTCCGGA
* *
73920993 GCTTGGCAAATATGGAAAGTA-ATCTTCAAAGATAT
1 GCTTGGAAAATATGG-AAGGAGATCTTCAAAGATAT
73921028 GCTTGGAAAATATGGAAGGAGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAGGAGATCTTCAAAGATAT
73921063 GC
1 GC
73921065 GATCTTAGAC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 4 0.12
35 30 0.88
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAGGAGATCTTCAAAGATAT
Found at i:73922755 original size:25 final size:25
Alignment explanation
Indices: 73922716--73922907 Score: 145
Period size: 25 Copynumber: 7.7 Consensus size: 25
73922706 ATGATAATAC
* *
73922716 GATCGGCATAAAGCCATCGATAACA
1 GATCGGCACAAAGCCATCAATAACA
* * *
73922741 GATCAGCACATAGCCATCAATATCA
1 GATCGGCACAAAGCCATCAATAACA
* * *
73922766 TATCGGCACAAAGCCGTCGATAACA
1 GATCGGCACAAAGCCATCAATAACA
* * *
73922791 GATCGACACATAGCCATCAATATCA
1 GATCGGCACAAAGCCATCAATAACA
*
73922816 TATCGGCACAAAGCCATCAAT-A-A
1 GATCGGCACAAAGCCATCAATAACA
* * * *
73922839 GATACTGACACGAAGCCTTCAATAGCA
1 GAT-C-GGCACAAAGCCATCAATAACA
* * * *
73922866 TATCGGCACAAAGTCTTCAATAGCA
1 GATCGGCACAAAGCCATCAATAACA
* * *
73922891 TATTGACACAAAGCCAT
1 GATCGGCACAAAGCCAT
73922908 AATCAGAATA
Statistics
Matches: 129, Mismatches: 34, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
23 3 0.02
24 1 0.01
25 121 0.94
26 1 0.01
27 3 0.02
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.19
Consensus pattern (25 bp):
GATCGGCACAAAGCCATCAATAACA
Found at i:73922792 original size:50 final size:50
Alignment explanation
Indices: 73922717--73922878 Score: 215
Period size: 50 Copynumber: 3.2 Consensus size: 50
73922707 TGATAATACG
*
73922717 ATCGGCATAAAGCCATCGATAACAGATC-AGCACATAGCCATCAATATCAT
1 ATCGGCACAAAGCCATCGATAACAGATCGA-CACATAGCCATCAATATCAT
*
73922767 ATCGGCACAAAGCCGTCGATAACAGATCGACACATAGCCATCAATATCAT
1 ATCGGCACAAAGCCATCGATAACAGATCGACACATAGCCATCAATATCAT
* * *
73922817 ATCGGCACAAAGCCATCAAT-A-AGATACTGACACGA-AGCCTTCAATAGCAT
1 ATCGGCACAAAGCCATCGATAACAGAT-C-GACAC-ATAGCCATCAATATCAT
73922867 ATCGGCACAAAG
1 ATCGGCACAAAG
73922879 TCTTCAATAG
Statistics
Matches: 102, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
48 4 0.04
49 2 0.02
50 94 0.92
51 2 0.02
ACGTcount: A:0.40, C:0.27, G:0.16, T:0.18
Consensus pattern (50 bp):
ATCGGCACAAAGCCATCGATAACAGATCGACACATAGCCATCAATATCAT
Found at i:73922855 original size:75 final size:75
Alignment explanation
Indices: 73922716--73922907 Score: 170
Period size: 75 Copynumber: 2.6 Consensus size: 75
73922706 ATGATAATAC
* * * * * * * *
73922716 GATCGGCATAAAGCCATCGATAACAGATCAGCACATAGCCATCAATATCATATCGGCACAAAGCC
1 GATCGACACAAAGCCATCAATAACATATCGGCACAAAGCCATCAATAACATATCGACACAAAGCC
*
73922781 GTCGATAACA
66 GTCAATAACA
* * * *
73922791 GATCGACACATAGCCATCAATATCATATCGGCACAAAGCCATCAATAAGATA-CTGACACGAAGC
1 GATCGACACAAAGCCATCAATAACATATCGGCACAAAGCCATCAATAACATATC-GACACAAAGC
* *
73922855 CTTCAATAGCA
65 CGTCAATAACA
* * * * * * *
73922866 TATCGGCACAAAGTCTTCAATAGCATATTGACACAAAGCCAT
1 GATCGACACAAAGCCATCAATAACATATCGGCACAAAGCCAT
73922908 AATCAGAATA
Statistics
Matches: 93, Mismatches: 23, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
74 1 0.01
75 92 0.99
ACGTcount: A:0.39, C:0.26, G:0.16, T:0.19
Consensus pattern (75 bp):
GATCGACACAAAGCCATCAATAACATATCGGCACAAAGCCATCAATAACATATCGACACAAAGCC
GTCAATAACA
Found at i:73922886 original size:50 final size:49
Alignment explanation
Indices: 73922717--73922907 Score: 176
Period size: 50 Copynumber: 3.8 Consensus size: 49
73922707 TGATAATACG
* * *
73922717 ATCGGCATAAAGCCATCGATAACAGAT-CAG-CACATAGCCATCAATATCAT
1 ATCGGCACAAAGCCATCAAT-A-AGATACTGACACA-AGCCATCAATATCAT
* *
73922767 ATCGGCACAAAGCCGTCGATAACAGAT-C-GACACATAGCCATCAATATCAT
1 ATCGGCACAAAGCCATCAAT-A-AGATACTGACACA-AGCCATCAATATCAT
* *
73922817 ATCGGCACAAAGCCATCAATAAGATACTGACACGAAGCCTTCAATAGCAT
1 ATCGGCACAAAGCCATCAATAAGATACTGACAC-AAGCCATCAATATCAT
* * *
73922867 ATCGGCACAAAGTCTTCAAT-AGCATATTGACACAAAGCCAT
1 ATCGGCACAAAGCCATCAATAAG-ATACTGACAC-AAGCCAT
73922908 AATCAGAATA
Statistics
Matches: 125, Mismatches: 11, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
48 4 0.03
49 5 0.04
50 115 0.92
51 1 0.01
ACGTcount: A:0.39, C:0.26, G:0.15, T:0.19
Consensus pattern (49 bp):
ATCGGCACAAAGCCATCAATAAGATACTGACACAAGCCATCAATATCAT
Found at i:73923159 original size:25 final size:25
Alignment explanation
Indices: 73923127--73923199 Score: 94
Period size: 26 Copynumber: 2.8 Consensus size: 25
73923117 GGGTATATTG
73923127 GTCATTTT-CCTAATAGGGGTAAAAC
1 GTCATTTTACCT-ATAGGGGTAAAAC
* *
73923152 GTCATTTTACCCTACAGGCGTAAAAC
1 GTCATTTTA-CCTATAGGGGTAAAAC
73923178 GTCATTTTACCCTATAGGGGTA
1 GTCATTTTA-CCTATAGGGGTA
73923200 TTTTGGTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
25 8 0.19
26 31 0.74
27 3 0.07
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (25 bp):
GTCATTTTACCTATAGGGGTAAAAC
Found at i:73923212 original size:26 final size:26
Alignment explanation
Indices: 73923183--73923265 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
73923173 AAAACGTCAT
*
73923183 TTTACCCTATAGGGGTATTTTGGTAA
1 TTTACCCTATAGGGGTATTTTGATAA
*
73923209 TTTACCCTATAGGGGTATTTCGATAA
1 TTTACCCTATAGGGGTATTTTGATAA
*
73923235 TTTACCCTACAGGGGTATTTTGATAA
1 TTTACCCTATAGGGGTATTTTGATAA
73923261 TTTAC
1 TTTAC
73923266 AGTACAAAGG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.41
Consensus pattern (26 bp):
TTTACCCTATAGGGGTATTTTGATAA
Found at i:73923213 original size:52 final size:52
Alignment explanation
Indices: 73923157--73923265 Score: 130
Period size: 52 Copynumber: 2.1 Consensus size: 52
73923147 AAAACGTCAT
* * *
73923157 TTTACCCTACAGGCGTAAAACG-TCATTTTACCCTATAGGGGTATTTTGGTAA
1 TTTACCCTACAGGCGTAAAACGAT-AATTTACCCTACAGGGGTATTTTGATAA
* * ***
73923209 TTTACCCTATAGGGGTATTTCGATAATTTACCCTACAGGGGTATTTTGATAA
1 TTTACCCTACAGGCGTAAAACGATAATTTACCCTACAGGGGTATTTTGATAA
73923261 TTTAC
1 TTTAC
73923266 AGTACAAAGG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
52 47 0.98
53 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (52 bp):
TTTACCCTACAGGCGTAAAACGATAATTTACCCTACAGGGGTATTTTGATAA
Found at i:73923271 original size:26 final size:26
Alignment explanation
Indices: 73923183--73923316 Score: 126
Period size: 26 Copynumber: 5.1 Consensus size: 26
73923173 AAAACGTCAT
* * *
73923183 TTTACCCTATAGGGGTATTTTGGTAA
1 TTTACACTACAGGGGTATTTCGGTAA
* * *
73923209 TTTACCCTATAGGGGTATTTCGATAA
1 TTTACACTACAGGGGTATTTCGGTAA
* * *
73923235 TTTACCCTACAGGGGTATTTTGATAA
1 TTTACACTACAGGGGTATTTCGGTAA
* **
73923261 TTTACAGTACAAAGGTATTTCGGTAA
1 TTTACACTACAGGGGTATTTCGGTAA
*
73923287 CTTTACA-AATCAGGGGTATTTCGGTAA
1 -TTTACACTA-CAGGGGTATTTCGGTAA
73923314 TTT
1 TTT
73923317 TACAAACCGG
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
26 72 0.77
27 21 0.23
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (26 bp):
TTTACACTACAGGGGTATTTCGGTAA
Found at i:73923278 original size:52 final size:53
Alignment explanation
Indices: 73923183--73923292 Score: 141
Period size: 52 Copynumber: 2.1 Consensus size: 53
73923173 AAAACGTCAT
* * * * **
73923183 TTTACCCTATAGGGGTATTTTGGTAATTTACCCTATAGGGGTATTTCGATAA-
1 TTTACCCTACAGGGGTATTTTGATAATTTACACTACAAAGGTATTTCGATAAC
* *
73923235 TTTACCCTACAGGGGTATTTTGATAATTTACAGTACAAAGGTATTTCGGTAAC
1 TTTACCCTACAGGGGTATTTTGATAATTTACACTACAAAGGTATTTCGATAAC
73923288 TTTAC
1 TTTAC
73923293 AAATCAGGGG
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
52 44 0.90
53 5 0.10
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (53 bp):
TTTACCCTACAGGGGTATTTTGATAATTTACACTACAAAGGTATTTCGATAAC
Found at i:73927072 original size:27 final size:27
Alignment explanation
Indices: 73926933--73927178 Score: 209
Period size: 27 Copynumber: 9.2 Consensus size: 27
73926923 TTAGTTTACC
* *
73926933 AAATTACTGAAATATCCC-C-AGTTGTA
1 AAATTACTAAAATA-CCCTCGATTTGTA
* * * * *
73926959 AAATTACCAAAGTACCCCCTGGTTTATA
1 AAATTACTAAAATACCCTC-GATTTGTA
*
73926987 AAATTATCT-AAATATCCTCGATTTGT-
1 AAATTA-CTAAAATACCCTCGATTTGTA
** * *
73927013 AAATTACCGAAATACCGTC-AATTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
73927039 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
73927066 AAATTACCAAAATACCCTC-AGTTTGCA
1 AAATTACTAAAATACCCTCGA-TTTGTA
*
73927093 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* *
73927120 AAATTACT-GAATACCCTCGACTTGTA
1 AAATTACTAAAATACCCTCGATTTGTA
* * * *
73927146 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACTAAAATACCCTCGATTTGTA
*
73927173 GAATTA
1 AAATTA
73927179 TCGTTTTACC
Statistics
Matches: 176, Mismatches: 34, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
25 9 0.05
26 65 0.37
27 83 0.47
28 18 0.10
29 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTAAAATACCCTCGATTTGTA
Found at i:73927097 original size:80 final size:80
Alignment explanation
Indices: 73926954--73927169 Score: 240
Period size: 80 Copynumber: 2.7 Consensus size: 80
73926944 ATATCCCCAG
* * * * * * * * *
73926954 TTGTAAAATTACCAAAGTACCCCCTGGTTTATAAAATTATCTAAATATCCTCGATTTGTAAATTA
1 TTGTAAAATTACTAAAATACCCTC-GATTTGTAAAATTACCAAAATACCCTCGATTTGAAAATTA
* *
73927019 CCGAAATACCGTCAA-
65 CCAAAATACCCTCAAT
73927034 TTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTC-AGTTTGCAAAATT
1 TTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGA-TTTG-AAAATT
*
73927098 ACTAAAATACCCTCAAT
64 ACCAAAATACCCTCAAT
* * * *
73927115 TTGTAAAATTACT-GAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTT
1 TTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTT
73927170 ATAGAATTAT
Statistics
Matches: 116, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 26 0.22
80 75 0.65
81 14 0.12
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
TTGTAAAATTACTAAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCGATTTGAAAATTAC
CAAAATACCCTCAAT
Found at i:73927231 original size:27 final size:27
Alignment explanation
Indices: 73927208--73927485 Score: 335
Period size: 27 Copynumber: 10.4 Consensus size: 27
73927198 CAAAATTATT
73927208 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73927235 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73927262 GAAATACGCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73927289 GAAATACCCCTATAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73927316 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73927343 GAAATACCCTTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73927370 GAAATACCCCTG-AGGGTAGAACTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73927396 GAAATACCCTTGTAGGGTAGAAATGCC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
73927423 GAAATACCTCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
73927450 GACATACCCCT-AAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
73927476 GAAATACCCC
1 GAAATACCCC
73927486 GAAATACTTC
Statistics
Matches: 214, Mismatches: 36, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
26 45 0.21
27 169 0.79
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:73927256 original size:81 final size:81
Alignment explanation
Indices: 73927197--73927484 Score: 343
Period size: 80 Copynumber: 3.6 Consensus size: 81
73927187 CCCTCGATTT
* *
73927197 ACAAAATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATATC
1 ACAAAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATATC
73927262 GAAATACGCCTATAGG
66 GAAATACGCCTATAGG
** * * *
73927278 GTAGAATTACTGAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACC
1 ACAAAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATATC
73927343 GAAATAC-CCTTATAGG
66 GAAATACGCC-TATAGG
** * * * * **
73927359 GTAGAAA-TACCGAAATACCCCT-GAGGGTAGAACTACTGAAATACCCTTGTAGGGTAGAAATGC
1 ACA-AAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATAT
73927422 CGAAATAC-CTCTATAGG
65 CGAAATACGC-CTATAGG
** * *
73927439 GTAGAATTACTGACATACCCCTA-AGGGTAGAATTACCGAAATACCC
1 ACAAAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCC
73927485 CGAAATACTT
Statistics
Matches: 183, Mismatches: 19, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
79 2 0.01
80 90 0.49
81 89 0.49
82 2 0.01
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (81 bp):
ACAAAATTACTGAAATACCCCTATAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATATC
GAAATACGCCTATAGG
Found at i:73927425 original size:80 final size:80
Alignment explanation
Indices: 73927201--73927619 Score: 441
Period size: 81 Copynumber: 5.1 Consensus size: 80
73927191 CGATTTACAA
* *
73927201 AATTATTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATATCGAAA
1 AATTACTGAAATACCCCTG-AGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
73927266 TACGCC-TATAGGGTAG
65 TAC-CCTTATAGGGTAG
* *
73927282 AATTACTGAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACTGAAATACCCCT-GAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
73927347 TACCCTTATAGGGTAG
65 TACCCTTATAGGGTAG
* * * * *
73927363 AAATACCGAAATACCCCTGAGGGTAGAACTACTGAAATACCCTTGTAGGGTAGAAATGCCGAAAT
1 AATTACTGAAATACCCCTGAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAAT
73927428 A-CCTCTATAGGGTAG
66 ACCCT-TATAGGGTAG
* * *
73927443 AATTACTGACATACCCCTAAGGGTAGAATTACCGAAATACCCCGAAATACTTCTGTAAGGTAGAA
1 AATTACTGAAATACCCCTGAGGGTAGAATTACCGAAATA--CC------C-T-TGTAGGGTAGAA
* ** *
73927508 TTACTAAAATAACCCTGTA-A-GATAG
56 ATACCGAAAT-ACCCT-TATAGGGTAG
* * * * * *
73927533 AATTACTGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAGAATTACCGAGA
1 AATTACTGAAATACCCCTG-AGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
* *
73927598 TACCCTTGTAGGGTAA
65 TACCCTTATAGGGTAG
73927614 AATTAC
1 AATTAC
73927620 CATTTTGCCC
Statistics
Matches: 283, Mismatches: 37, Indels: 36
0.79 0.10 0.10
Matches are distributed among these distances:
79 4 0.01
80 94 0.33
81 116 0.41
82 2 0.01
83 1 0.00
88 1 0.00
89 3 0.01
90 37 0.13
91 20 0.07
92 5 0.02
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (80 bp):
AATTACTGAAATACCCCTGAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAAT
ACCCTTATAGGGTAG
Found at i:73927525 original size:27 final size:27
Alignment explanation
Indices: 73927495--73927619 Score: 112
Period size: 27 Copynumber: 4.6 Consensus size: 27
73927485 CGAAATACTT
*
73927495 CTGTAAGGTAGAATTACTAAAATAACC
1 CTGTAAGGTAGAATTACTGAAATAACC
*
73927522 CTGTAAGATAGAATTACTGAAAT-ACC
1 CTGTAAGGTAGAATTACTGAAATAACC
* * *
73927548 CTTGTAGGGTAGAAATA-TCGAAATACCC
1 C-TGTAAGGTAGAATTACT-GAAATAACC
* * *
73927576 CTGTAGGGTAGAATTACCGAGAT-ACC
1 CTGTAAGGTAGAATTACTGAAATAACC
* *
73927602 CTTGTAGGGTAAAATTAC
1 C-TGTAAGGTAGAATTAC
73927620 CATTTTGCCC
Statistics
Matches: 82, Mismatches: 11, Indels: 10
0.80 0.11 0.10
Matches are distributed among these distances:
26 8 0.10
27 71 0.87
28 3 0.04
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (27 bp):
CTGTAAGGTAGAATTACTGAAATAACC
Found at i:73927572 original size:54 final size:53
Alignment explanation
Indices: 73927514--73927616 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 53
73927504 AGAATTACTA
*
73927514 AAATAACCCTGTAAGATAGAATTACTGAAATACCCTTGTAGGGTAGAAATATCG
1 AAATAACCCTGTAAGATAGAATTACCGAAATACCCTTGTAGGGTA-AAATATCG
* * * *
73927568 AAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTAGGGTAAAAT
1 AAATAACCCTGTAAGATAGAATTACCGAAATACCCTTGTAGGGTAAAAT
73927617 TACCATTTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
53 4 0.09
54 40 0.91
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (53 bp):
AAATAACCCTGTAAGATAGAATTACCGAAATACCCTTGTAGGGTAAAATATCG
Found at i:73927620 original size:27 final size:27
Alignment explanation
Indices: 73927533--73927620 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
73927523 TGTAAGATAG
*
73927533 AATTACTGAAATACCCTTGTAGGGTAGA
1 AATTACCGAAATACCCTTGTAGGGTA-A
* * *
73927561 AA-TATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAA
*
73927587 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAA
73927614 AATTACC
1 AATTACC
73927621 ATTTTGCCCC
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.04
27 47 0.92
28 2 0.04
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAA
Found at i:73927783 original size:16 final size:16
Alignment explanation
Indices: 73927762--73927792 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73927752 CAAATATGGG
*
73927762 CATGACATTTTGCATA
1 CATGACATGTTGCATA
73927778 CATGACATGTTGCAT
1 CATGACATGTTGCAT
73927793 GGGTTCGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
CATGACATGTTGCATA
Found at i:73928306 original size:26 final size:26
Alignment explanation
Indices: 73928270--73928349 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
73928260 ATTCTGTTAA
* *
73928270 GTGGCTTTGCCACATTATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
* *
73928296 GTGGCTCTGCCATAATATTTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* *
73928323 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
73928349 G
1 G
73928350 CAGCCATGCT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
26 23 0.51
27 22 0.49
ACGTcount: A:0.16, C:0.21, G:0.23, T:0.40
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:73928330 original size:27 final size:26
Alignment explanation
Indices: 73928277--73928349 Score: 92
Period size: 27 Copynumber: 2.8 Consensus size: 26
73928267 TAAGTGGCTT
* *
73928277 TGCCACATTATCTGTTCTGGTGGCTC
1 TGCCACAATATCTGTTCTGGTGACTC
* *
73928303 TGCCATAATATTTGTATCTGGTGACTC
1 TGCCACAATATCTGT-TCTGGTGACTC
*
73928330 TGTCACAATATCTGTTCTGG
1 TGCCACAATATCTGTTCTGG
73928350 CAGCCATGCT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 17 0.44
27 22 0.56
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.40
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:73934580 original size:41 final size:42
Alignment explanation
Indices: 73934466--73934635 Score: 164
Period size: 42 Copynumber: 4.0 Consensus size: 42
73934456 CACATATTAC
* * * * *
73934466 CATACCAATGCCATGTCCCAGATATAGTCTTACATGAGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
* * * * * *
73934508 CGTATCGATGCCAATAGCCCAGCTATTGTCTTACACGAAATTT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACACGAAATCT
* * *
73934551 CATATCAATGTCAT-TCCCAGATATGGTCTTCCACGAAGTCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
* *
73934592 CATATAAATGCCATATCCCAGATATGATCTTACAC-ATAATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGA-AATCT
73934634 CA
1 CA
73934636 GTGACCCTAA
Statistics
Matches: 101, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
41 34 0.34
42 35 0.35
43 32 0.32
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGAAATCT
Found at i:73934603 original size:84 final size:84
Alignment explanation
Indices: 73934466--73934626 Score: 184
Period size: 84 Copynumber: 1.9 Consensus size: 84
73934456 CACATATTAC
* * ** *
73934466 CATACCAATGCCATGTCCCAGATATAGTCTTACATGAGATCTCGTATCGATGCCAATAGCCCAGC
1 CATACCAATGCCATGTCCCAGATATAGTCTTACACGAGATCTCATATAAATGCC-ATAGCCCAGA
73934531 TATTG-TCTTACACGAAATTT
65 TA-TGATCTTACACGAAATTT
* * * * *
73934551 CATATCAATGTCAT-TCCCAGATATGGTCTTCCACGA-AGTCTCATATAAATGCCATATCCCAGA
1 CATACCAATGCCATGTCCCAGATATAGTCTTACACGAGA-TCTCATATAAATGCCATAGCCCAGA
73934614 TATGATCTTACAC
65 TATGATCTTACAC
73934627 ATAATCTCAG
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
82 2 0.03
83 19 0.30
84 31 0.48
85 12 0.19
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (84 bp):
CATACCAATGCCATGTCCCAGATATAGTCTTACACGAGATCTCATATAAATGCCATAGCCCAGAT
ATGATCTTACACGAAATTT
Found at i:73941493 original size:48 final size:47
Alignment explanation
Indices: 73941417--73941582 Score: 183
Period size: 48 Copynumber: 3.5 Consensus size: 47
73941407 CACATTATGA
* *
73941417 AAGCCAGTGTAAGTCATG-CTAGGACATGCATCGGCCTTGAGATATTT
1 AAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATA-TT
* * * *
73941464 AAGCCAGTATAAGACATGTCTGGGACATGCATTGGCATTGAGACA-T
1 AAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATT
** * *
73941510 GGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATAC
1 AAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATAT-T
* * *
73941558 AAGCTAGTGTAAAACCTGTCTGGGA
1 AAGCCAGTGTAAGACATGTCTGGGA
73941583 GATGGTGTCA
Statistics
Matches: 98, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
46 39 0.40
47 16 0.16
48 43 0.44
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (47 bp):
AAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATT
Found at i:73943918 original size:18 final size:19
Alignment explanation
Indices: 73943878--73943919 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
73943868 TGTATTGATA
* *
73943878 ATGGTTGGTGAACTTGGAT
1 ATGGTTGATGAACTTGGAC
*
73943897 ATGGTTGATGAA-TTGGCC
1 ATGGTTGATGAACTTGGAC
73943915 ATGGT
1 ATGGT
73943920 ATATATTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.21, C:0.07, G:0.36, T:0.36
Consensus pattern (19 bp):
ATGGTTGATGAACTTGGAC
Found at i:73944354 original size:20 final size:20
Alignment explanation
Indices: 73944288--73944354 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
73944278 ATGATTCGAC
73944288 ATTTGTATATGTATAAGCATAT
1 ATTTGTATATG-ATAAG-ATAT
* * *
73944310 A-ATGT-TTTGATATGATAT
1 ATTTGTATATGATAAGATAT
73944328 -TTATGTATATGATAAGATAT
1 ATT-TGTATATGATAAGATAT
73944348 ATTTGTA
1 ATTTGTA
73944355 ATGTATTTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 10
0.69 0.12 0.20
Matches are distributed among these distances:
18 4 0.11
19 7 0.20
20 18 0.51
21 5 0.14
22 1 0.03
ACGTcount: A:0.36, C:0.01, G:0.15, T:0.48
Consensus pattern (20 bp):
ATTTGTATATGATAAGATAT
Found at i:73975581 original size:23 final size:23
Alignment explanation
Indices: 73975555--73975628 Score: 61
Period size: 23 Copynumber: 3.4 Consensus size: 23
73975545 TACATTAAGA
73975555 CATACATATCGTGAACTTCTATT
1 CATACATATCGTGAACTTCTATT
* **
73975578 CATAC---TCGT--ACATT-AAGA
1 CATACATATCGTGAAC-TTCTATT
73975596 CATACATATCGTGAACTTCTATT
1 CATACATATCGTGAACTTCTATT
*
73975619 CATACCTATC
1 CATACATATC
73975629 CAAATTTTGA
Statistics
Matches: 37, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
18 8 0.22
19 2 0.05
20 4 0.11
21 4 0.11
22 2 0.05
23 17 0.46
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.35
Consensus pattern (23 bp):
CATACATATCGTGAACTTCTATT
Found at i:73975587 original size:41 final size:41
Alignment explanation
Indices: 73975542--73975623 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
73975532 TTATCTCATT
73975542 TCGTACATTAAGACATACATATCGTGAACTTCTATTCATAC
1 TCGTACATTAAGACATACATATCGTGAACTTCTATTCATAC
73975583 TCGTACATTAAGACATACATATCGTGAACTTCTATTCATAC
1 TCGTACATTAAGACATACATATCGTGAACTTCTATTCATAC
73975624 CTATCCAAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (41 bp):
TCGTACATTAAGACATACATATCGTGAACTTCTATTCATAC
Found at i:73977444 original size:170 final size:171
Alignment explanation
Indices: 73977149--73977489 Score: 621
Period size: 170 Copynumber: 2.0 Consensus size: 171
73977139 TCATAATGAC
73977149 ACATACACAAAATGACTAAGTCCCTATACATGCCATAGACTCAAAGGTTTGCATTCATTTACCCA
1 ACATACACAAAATGACTAAGTCCCTATACATGCCATAGACTCAAAGGTTTGCATTCATTTACCCA
* *
73977214 ACATGATAGCTTGATAGTGTGATAGAATCTACGACGATCTCCAACCCGAGCTAGCTGAATAAACC
66 ACATGATAGCTTGATAGTGTGATAGAATCTACGACGATCTCCAACCCCAGCTACCTGAATAAACC
73977279 TATGAGAGGTGGGAAAG-AAAAAAGGGGGTAAGCTTCAAAG
131 TATGAGAGGTGGGAAAGAAAAAAAGGGGGTAAGCTTCAAAG
* *
73977319 ACATACACAAAATGACTAAGTCCCTATACATGCCATAGATTCAAAGGTTTGCGTTCATTTACCCA
1 ACATACACAAAATGACTAAGTCCCTATACATGCCATAGACTCAAAGGTTTGCATTCATTTACCCA
*
73977384 ACATGATAGCTTGATAGTGTGATAGAATCTTCGACGATCTCCAACCCCAGCTACCTGAATAAACC
66 ACATGATAGCTTGATAGTGTGATAGAATCTACGACGATCTCCAACCCCAGCTACCTGAATAAACC
*
73977449 TATGAGAGGTTGGAAAGAAAAAAAGGGGGTAAGCTTCAAAG
131 TATGAGAGGTGGGAAAGAAAAAAAGGGGGTAAGCTTCAAAG
73977490 CTTAGTAAAT
Statistics
Matches: 164, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
170 141 0.86
171 23 0.14
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (171 bp):
ACATACACAAAATGACTAAGTCCCTATACATGCCATAGACTCAAAGGTTTGCATTCATTTACCCA
ACATGATAGCTTGATAGTGTGATAGAATCTACGACGATCTCCAACCCCAGCTACCTGAATAAACC
TATGAGAGGTGGGAAAGAAAAAAAGGGGGTAAGCTTCAAAG
Found at i:73978027 original size:45 final size:45
Alignment explanation
Indices: 73977976--73978063 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
73977966 CCAAAACATG
*
73977976 TGTCACATACATCGCGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATACATCACGAACTCAGACCACAACTCAATGAGTTCAGA
** * * *
73978021 TGTCACATATGTCATGAACTCAGAGCATAACTCAATGAGTTCA
1 TGTCACATACATCACGAACTCAGACCACAACTCAATGAGTTCA
73978064 AACCACATAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (45 bp):
TGTCACATACATCACGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:73981673 original size:45 final size:45
Alignment explanation
Indices: 73981623--73981715 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
73981613 AAAACATGTG
*
73981623 TCACATATATCATGAACTCAGACCACAACTCAATGTGTTCAGACT
1 TCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGACT
* *
73981668 TCACATATATCATGAACTCATACCACAACTCAATGAGTTCAGATT
1 TCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGACT
73981713 TCA
1 TCA
73981716 TAATTCCTAG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.37, C:0.26, G:0.10, T:0.28
Consensus pattern (45 bp):
TCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGACT
Found at i:73987657 original size:37 final size:37
Alignment explanation
Indices: 73987607--73987685 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
73987597 TTATTACGAA
* * * *
73987607 GTCTTACCCGGACATAATCTCTACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
73987644 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
73987681 GTCTT
1 GTCTT
73987686 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Done.