Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 226 of 325
Found at i:73987874 original size:47 final size:47
Alignment explanation
Indices: 73987803--73988295 Score: 810
Period size: 47 Copynumber: 10.4 Consensus size: 47
73987793 GCCCTTTGGG
* * * * * *
73987803 ACTTTCACATCCATCACGTTGGCCACTCA-GCCCTGTCACATATATAC
1 ACTTTCACATTCATCACATCGGCCA-TTAGGCCTTATCACATATATAC
73987850 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73987897 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
73987944 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73987991 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
73988038 ACTTTCACATTCATCACTTCGGCCATTAGGCCTTATCACTTATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
73988087 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
73988136 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
73988183 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* * *
73988230 ACTTTCAAATTCATCACATCGGCCATTAGGCCTTATCTCATATATGC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
73988277 A-TGTTCACATCCATCACAT
1 ACT-TTCACATTCATCACAT
73988296 AGAATCCTAA
Statistics
Matches: 426, Mismatches: 16, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
46 3 0.01
47 329 0.77
49 94 0.22
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:73988259 original size:239 final size:237
Alignment explanation
Indices: 73987842--73988293 Score: 825
Period size: 239 Copynumber: 1.9 Consensus size: 237
73987832 GCCCTGTCAC
73987842 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
*
73987907 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTA
66 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
*
73987972 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
131 GGCCTTATCACATATATACACTTTCAAATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
73988037 CACT-TTCACATTCATCACTTCGGCCATTAGGCCTTATCACTT
196 CA-TGTTCACATCCATCACTTCGGCCATTAGGCCTTATCACTT
73988079 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCAC
73988144 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
64 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCAT
*
73988209 TAGGCCTTATCACATATATACACTTTCAAATTCATCACATCGGCCATTAGGCCTTATCTCATATA
129 TAGGCCTTATCACATATATACACTTTCAAATTCATCACATCGGCCATTAGGCCTTATCACATATA
*
73988274 TGCATGTTCACATCCATCAC
194 TACATGTTCACATCCATCAC
73988294 ATAGAATCCT
Statistics
Matches: 207, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
237 47 0.23
238 1 0.00
239 159 0.77
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (237 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
GGCCTTATCACATATATACACTTTCAAATTCATCACATCGGCCATTAGGCCTTATCACATATATA
CATGTTCACATCCATCACTTCGGCCATTAGGCCTTATCACTT
Found at i:73992642 original size:47 final size:48
Alignment explanation
Indices: 73992490--73992656 Score: 210
Period size: 48 Copynumber: 3.5 Consensus size: 48
73992480 TTTCATATCG
* * * * * *
73992490 ATGCCATGTACCAGACTTGGTTTTACATGAAATCACATATTGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGAGATCTCATATCGATGCCA
* * * *
73992538 ATGCCATATCCCTGATATGGTCCTACATGAGATCTCATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGAGATCTCATATCGATGCCA
* * *
73992586 AGGCTATGTCCCAAACATGGTCTTACATG-GATCTCATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGAGATCTCATATCGATGCCA
73992633 ATGCCATGTCCCAGACATGGTCTT
1 ATGCCATGTCCCAGACATGGTCTT
73992657 GCATAGGATC
Statistics
Matches: 99, Mismatches: 20, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
47 39 0.39
48 60 0.61
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGAGATCTCATATCGATGCCA
Found at i:73996250 original size:28 final size:27
Alignment explanation
Indices: 73996200--73996252 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
73996190 CTATTCAGAA
* *
73996200 ATCAATGTTAACTGGGCCTTAGCCCAT
1 ATCAATATTAACTGGGCCATAGCCCAT
73996227 ATCAATATTAATCTGGGCCATAGCCC
1 ATCAATATTAA-CTGGGCCATAGCCC
73996253 CTTACAGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (27 bp):
ATCAATATTAACTGGGCCATAGCCCAT
Found at i:73996332 original size:60 final size:59
Alignment explanation
Indices: 73996213--73996348 Score: 150
Period size: 60 Copynumber: 2.3 Consensus size: 59
73996203 AATGTTAACT
* * *
73996213 GGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATATG
1 GGGCC-TAGCCCATATCAATATCAATCTGGGCCACAGCCCATTACAG-ATCAGAGTATATG
* * *
73996274 GGGCCTAGCCCATATCAGTATCAATCTGGGCCGCAGCCCTATTACA-AGTC-GAGATATATT
1 GGGCCTAGCCCATATCAATATCAATCTGGGCCACAGCCC-ATTACAGA-TCAGAG-TATATG
*
73996334 GGGCCTTGCCCATAT
1 GGGCCTAGCCCATAT
73996349 TAACATAGTT
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 4 0.06
60 51 0.78
61 10 0.15
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (59 bp):
GGGCCTAGCCCATATCAATATCAATCTGGGCCACAGCCCATTACAGATCAGAGTATATG
Found at i:74005064 original size:40 final size:40
Alignment explanation
Indices: 74005006--74005197 Score: 296
Period size: 40 Copynumber: 4.8 Consensus size: 40
74004996 CGGATGATAA
* *
74005006 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
*
74005046 CCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
*
74005086 CCGGGCTTAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
* *
74005126 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-AAT
* *
74005166 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
74005198 AGCTATATCC
Statistics
Matches: 140, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 138 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAT
Found at i:74009164 original size:38 final size:39
Alignment explanation
Indices: 74009095--74009189 Score: 111
Period size: 38 Copynumber: 2.4 Consensus size: 39
74009085 AAATATATTC
* *
74009095 AGGTTAAATCCCGCAGGCTTCGCACTAGTATTATATCCG
1 AGGTTAAATCCCGCAGGCCTAGCACTAGTATTATATCCG
** * *
74009134 -GGTTAAATCCCGCAGGCCTAGTGCTGGTATTATATCTG
1 AGGTTAAATCCCGCAGGCCTAGCACTAGTATTATATCCG
*
74009172 AGCTTAAAGTCCCGCAGG
1 AGGTTAAA-TCCCGCAGG
74009190 TTTTGTGCTG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
38 32 0.68
39 6 0.13
40 9 0.19
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (39 bp):
AGGTTAAATCCCGCAGGCCTAGCACTAGTATTATATCCG
Found at i:74014394 original size:38 final size:39
Alignment explanation
Indices: 74014352--74014504 Score: 172
Period size: 38 Copynumber: 4.0 Consensus size: 39
74014342 AAAGACCTGT
* * * *
74014352 AGGCTAT-ATGCTGGAAATATATCTGCGTTAAATCCCGC
1 AGGCTATCGTGCTGGTATTATATCTGAGTTAAATCCCGC
* * *
74014390 AGGCT-TCGTACTGGTATTATATCCGGGTTAAATCCCGC
1 AGGCTATCGTGCTGGTATTATATCTGAGTTAAATCCCGC
*
74014428 AGG-TTTCGTGCTGGTATTATATCTGAGTTAAATCCCGC
1 AGGCTATCGTGCTGGTATTATATCTGAGTTAAATCCCGC
74014466 AGGCCTA--GTGCTGGTATTATATCTGAGCTTAAAGTCCCG
1 AGG-CTATCGTGCTGGTATTATATCTGAG-TTAAA-TCCCG
74014505 TAAGTTTTGT
Statistics
Matches: 99, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
37 2 0.02
38 86 0.87
39 5 0.05
40 6 0.06
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.32
Consensus pattern (39 bp):
AGGCTATCGTGCTGGTATTATATCTGAGTTAAATCCCGC
Found at i:74014449 original size:76 final size:78
Alignment explanation
Indices: 74014360--74014520 Score: 209
Period size: 76 Copynumber: 2.1 Consensus size: 78
74014350 GTAGGCTATA
* * * * *
74014360 TGCTGGAAATATATCTGCGTTAAATCCCGCAGGCTTCGTACTGGTATTATATCCG-GGTTAAA-T
1 TGCTGGTAATATATCTGAGTTAAATCCCGCAGGCCTAGTACTGGTATTATATCCGAGCTTAAAGT
*
74014423 CCCGCAGGTTTCG
66 CCCGCAAGTTTCG
* * *
74014436 TGCTGGTATTATATCTGAGTTAAATCCCGCAGGCCTAGTGCTGGTATTATATCTGAGCTTAAAGT
1 TGCTGGTAATATATCTGAGTTAAATCCCGCAGGCCTAGTACTGGTATTATATCCGAGCTTAAAGT
* *
74014501 CCCGTAAGTTTTG
66 CCCGCAAGTTTCG
74014514 TGCTGGT
1 TGCTGGT
74014521 GACTGGATTC
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
76 48 0.67
77 6 0.08
78 18 0.25
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (78 bp):
TGCTGGTAATATATCTGAGTTAAATCCCGCAGGCCTAGTACTGGTATTATATCCGAGCTTAAAGT
CCCGCAAGTTTCG
Found at i:74025229 original size:46 final size:46
Alignment explanation
Indices: 74025179--74025303 Score: 205
Period size: 46 Copynumber: 2.7 Consensus size: 46
74025169 TGAGCATCCG
***
74025179 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCA
*
74025225 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCA
*
74025271 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74025304 GCGGGTTACA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCA
Found at i:74030322 original size:9 final size:9
Alignment explanation
Indices: 74030300--74030415 Score: 94
Period size: 9 Copynumber: 12.7 Consensus size: 9
74030290 ATATTTATGT
*
74030300 ATTATATAA
1 ATTATGTAA
*
74030309 GTTATGTAA
1 ATTATGTAA
74030318 ATTATGTAA
1 ATTATGTAA
* ***
74030327 GTTATCCGA
1 ATTATGTAA
74030336 ATTATGTAA
1 ATTATGTAA
74030345 ATTATGTAA
1 ATTATGTAA
74030354 GA-TATGATATA
1 -ATTATG-TA-A
74030365 TATTTATGT--
1 -A-TTATGTAA
74030374 ATTATGTAA
1 ATTATGTAA
*
74030383 GTTATGTAA
1 ATTATGTAA
74030392 ATTATGTAA
1 ATTATGTAA
74030401 ATTATGTAA
1 ATTATGTAA
*
74030410 AATATG
1 ATTATG
74030416 ATATATATTT
Statistics
Matches: 85, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
7 6 0.07
8 1 0.01
9 68 0.80
10 3 0.04
11 2 0.02
12 1 0.01
13 4 0.05
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.44
Consensus pattern (9 bp):
ATTATGTAA
Found at i:74030386 original size:56 final size:56
Alignment explanation
Indices: 74030318--74030429 Score: 188
Period size: 56 Copynumber: 2.0 Consensus size: 56
74030308 AGTTATGTAA
* *
74030318 ATTATGTAAGTTATCCGAATTATGTAAATTATGTAAGATATGATATATATTTATGT
1 ATTATGTAAGTTATCCAAATTATGTAAATTATGTAAAATATGATATATATTTATGT
**
74030374 ATTATGTAAGTTATGTAAATTATGTAAATTATGTAAAATATGATATATATTTATGT
1 ATTATGTAAGTTATCCAAATTATGTAAATTATGTAAAATATGATATATATTTATGT
74030430 TGATGGGATT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.39, C:0.02, G:0.13, T:0.46
Consensus pattern (56 bp):
ATTATGTAAGTTATCCAAATTATGTAAATTATGTAAAATATGATATATATTTATGT
Found at i:74030703 original size:91 final size:91
Alignment explanation
Indices: 74030597--74031154 Score: 809
Period size: 91 Copynumber: 6.0 Consensus size: 91
74030587 ATTTACAAGT
* * * *
74030597 TTTTTCGTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTATTTAGGTAATTTG
1 TTTTTCCTAATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
74030662 AAAATAAAATAAAAGTAGACAAAATA
66 AAAATAAAATAAAAGTAGACAAAATA
*
74030688 TTTTTCCTAATTAAAATAAAATAAAATAAAACTTTAAATACAATTTACTTTAATTAGGTAATTTA
1 TTTTTCCTAATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
*
74030753 AAAATAAAATAAAAGTAGACAAAGGT-
66 AAAATAAAATAAAAGTAGACAAA-ATA
* *
74030779 TTTTTCGTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTT-ATTCAGGTAATTT
1 TTTTTCCTAATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATT-AGGTAATTT
74030843 AAAAATAAAATAAAAGTAGACAAAATA
65 AAAAATAAAATAAAAGTAGACAAAATA
* * * *
74030870 TTTTCCCTAAATAAAATAAAATAAAATAAAAATTTAAATACAATTTACTTTAATTAGGTAATTTA
1 TTTTTCCTAATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
***
74030935 AAAATAAAATAAAAGTAGACAAAGGC
66 AAAATAAAATAAAAGTAGACAAAATA
* *
74030961 TTTTTCGTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
1 TTTTTCCTAATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
* *
74031026 TAAATAAAATAAAAGTAGAC-AAGT-
66 AAAATAAAATAAAAGTAGACAAAATA
74031050 TTTTTCCTGATTAAAATAAAATAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATT
1 TTTTTCC----T--AAT----TAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATT
74031115 AGGTAATTTAAAAATAAAATAAAAGTAGACAAAATA
56 AGGTAATTTAAAAATAAAATAAAAGTAGACAAAATA
74031151 TTTT
1 TTTT
74031155 AAACATTGTT
Statistics
Matches: 420, Mismatches: 31, Indels: 22
0.89 0.07 0.05
Matches are distributed among these distances:
89 6 0.01
90 7 0.02
91 320 0.76
92 4 0.01
93 1 0.00
95 2 0.00
99 73 0.17
100 3 0.01
101 4 0.01
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.34
Consensus pattern (91 bp):
TTTTTCCTAATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATTTA
AAAATAAAATAAAAGTAGACAAAATA
Found at i:74030908 original size:182 final size:181
Alignment explanation
Indices: 74030595--74031147 Score: 901
Period size: 182 Copynumber: 3.0 Consensus size: 181
74030585 TTATTTACAA
74030595 GTTTTTTCGTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTATTTAGGTAATT
1 GTTTTTTCGTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTA-TTAGGTAATT
* * * *
74030660 TGAAAATAAAATAAAAGTAGACAAAATATTTTTCCTAATTAAAATAAAATAAAATAAAACTTTAA
65 TAAAAATAAAATAAAAGTAGACAAAATATTTTCCCTAAATAAAATAAAATAAAATAAAAATTTAA
74030725 ATACAATTTACTTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAG
130 ATACAATTTACTTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAG
74030777 GTTTTTTCGTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTATTCAGGTAATT
1 GTTTTTTCGTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTATT-AGGTAATT
74030842 TAAAAATAAAATAAAAGTAGACAAAATATTTTCCCTAAATAAAATAAAATAAAATAAAAATTTAA
65 TAAAAATAAAATAAAAGTAGACAAAATATTTTCCCTAAATAAAATAAAATAAAATAAAAATTTAA
74030907 ATACAATTTACTTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAG
130 ATACAATTTACTTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAG
*
74030959 GCTTTTTCGTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTAATTAGGTAATT
1 GTTTTTTCGTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTT-ATTAGGTAATT
* * * *
74031024 TATAAATAAAATAAAAGTAGAC-AAGTTTTTTCCTGATTAAAATAAAATAAAATAAAATAAAATA
65 TAAAAATAAAATAAAAGTAGACAAAATATTTTCC---CT-AAATAAAATAAAATAAAAT---A-A
*
74031088 AAACTTTAAATACAATTTAATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAA
122 AAA-TTTAAATACAATTTACTTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAA
74031148 ATATTTTAAA
Statistics
Matches: 350, Mismatches: 10, Indels: 14
0.94 0.03 0.04
Matches are distributed among these distances:
181 11 0.03
182 256 0.73
183 3 0.01
184 1 0.00
185 19 0.05
188 1 0.00
189 4 0.01
190 55 0.16
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.34
Consensus pattern (181 bp):
GTTTTTTCGTGATTAAAATAAAATAAAATAAAACTTTAAATACAATTTAATTTATTAGGTAATTT
AAAAATAAAATAAAAGTAGACAAAATATTTTCCCTAAATAAAATAAAATAAAATAAAAATTTAAA
TACAATTTACTTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAG
Found at i:74031071 original size:5 final size:5
Alignment explanation
Indices: 74031061--74031090 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
74031051 TTTTCCTGAT
74031061 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
74031091 CTTTAAATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:74031204 original size:99 final size:97
Alignment explanation
Indices: 74031111--74031493 Score: 574
Period size: 99 Copynumber: 3.9 Consensus size: 97
74031101 AATTTAATTT
* * ** *
74031111 AATTAGGTAATTTAAAAATAAAATAAAAGTA-GACAA-AAT-ATTTTAAACATTGTTAAGTCTTT
1 AATTAGGTAATATAAAAATAAAATAAAA-TATTA-AATAATGACATT-AACCTTGTTAAGTCTTT
* *
74031173 CTTTTAATTTGCATTTATTGATTTGTTAATTTAAA
63 CTTTTAATTTGCATTTATTAATTTTTTAATTTAAA
*
74031208 AATTAGGTAATTTAAAAATAAAATAAAATATTTAAATTAATGACATTAACCTTGTTAAGTCTTTC
1 AATTAGGTAATATAAAAATAAAATAAAATA-TTAAA-TAATGACATTAACCTTGTTAAGTCTTTC
74031273 TTTTAATTTGCATTTATTAATTTTTTAATTTAAA
64 TTTTAATTTGCATTTATTAATTTTTTAATTTAAA
74031307 AATTAGGTAATATAAAAATAAAATAAAATATTTAAATTAATGACATTAACCTTGTTAAGTCTTTC
1 AATTAGGTAATATAAAAATAAAATAAAATA-TTAAA-TAATGACATTAACCTTGTTAAGTCTTTC
74031372 TTTTAATTTGCATTTATTAATTTTTTAATTTAAA
64 TTTTAATTTGCATTTATTAATTTTTTAATTTAAA
*
74031406 AATTAGGTAATATAAAAATAAAATAAAATATTTAAATTAATGACATTAAACTTGTTAAGTCTTTC
1 AATTAGGTAATATAAAAATAAAATAAAATA-TTAAA-TAATGACATTAACCTTGTTAAGTCTTTC
*
74031471 TTTTAATTTGCGTTTATTAATTT
64 TTTTAATTTGCATTTATTAATTT
74031494 AAGTAAACAC
Statistics
Matches: 272, Mismatches: 9, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
96 2 0.01
97 30 0.11
98 1 0.00
99 236 0.87
100 3 0.01
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (97 bp):
AATTAGGTAATATAAAAATAAAATAAAATATTAAATAATGACATTAACCTTGTTAAGTCTTTCTT
TTAATTTGCATTTATTAATTTTTTAATTTAAA
Found at i:74035562 original size:81 final size:78
Alignment explanation
Indices: 74035465--74035664 Score: 231
Period size: 81 Copynumber: 2.5 Consensus size: 78
74035455 ACGATTCTTA
* * *
74035465 ACACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGGATTAGGCCACTGGCTCGAAGGCCCTTTGGA
1 ACACTGGCTCAAAAGCCCTTCGA-ACCAAGCTCGGATTA-G-CACTGGCTCAAAAGCCCTTCGGA
74035529 ACTAAGTCCGGTTATG
63 ACTAAGTCCGGTTATG
* * * *
74035545 ACACTAGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGCCCTTCGTA
1 ACACTGGCTCAAAAGCCCTTCG-AACCAAGCTCGG--ATTAGCACTGGCTCAAAAGCCCTTCGGA
* * *
74035610 ATTAAGTTCGGTTATT
63 ACTAAGTCCGGTTATG
74035626 AGCACTGGCTCAAAAGCCCTTCGAACCCAAGCTCGGATT
1 A-CACTGGCTCAAAAGCCCTTCGAA-CCAAGCTCGGATT
74035665 TACACCCCGA
Statistics
Matches: 101, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
80 12 0.12
81 55 0.54
82 30 0.30
83 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
ACACTGGCTCAAAAGCCCTTCGAACCAAGCTCGGATTAGCACTGGCTCAAAAGCCCTTCGGAACT
AAGTCCGGTTATG
Found at i:74035606 original size:41 final size:41
Alignment explanation
Indices: 74035466--74035650 Score: 216
Period size: 41 Copynumber: 4.6 Consensus size: 41
74035456 CGATTCTTAA
* * *
74035466 CACTGGCTC-AAAGCCCTTCGAGACCAAGCTCGG--ATTAGG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTA-G
* * * * * *
74035505 CCACTGGCTCGAAGGCCCTTTGGAACTAAGTCCGGTTATGA-
1 -CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
*
74035546 CACTAGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
* *
74035587 CACTGGCTCAAAAGCCCTTCGTAATTAAGTTCGGTTATTAG
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
74035628 CACTGGCTCAAAAGCCCTTCGAA
1 CACTGGCTCAAAAGCCCTTCGAA
74035651 CCCAAGCTCG
Statistics
Matches: 122, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
40 42 0.34
41 77 0.63
43 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
Found at i:74038164 original size:158 final size:157
Alignment explanation
Indices: 74037917--74038251 Score: 401
Period size: 158 Copynumber: 2.1 Consensus size: 157
74037907 GATGTTTATT
* * *
74037917 TAAAAAACACCGCTAATC-CCTATATATTCAACTAAAACGATGACGTGTATAGTAAACTTTAATT
1 TAAAAAACGCCGCTAATCTCCTATATATTCAACTAAAACGACGACGTGTACAGTAAACTTTAATT
* * *
74037981 ATTTTGTGGCGTTTTTAAAAGCGCCACTAATACCCTCAT-ATACTAAAACGGCGCCGTTTTCTTT
66 ATATTGCGGCGTTTTTAAAAGCGCCACTAATACCCT-ATCA-ACTAAAACGACGCCGTTTTCTTT
*
74038045 AAACTAAACTGTCTTCTGTGGCGTTTTCTA
129 AAACTAAACTGTCTTCTGCGGCGTTTT-TA
* * * *
74038075 T-AAAAACGCTGCTAATCTCCTATATATTCAACTAAAACGACGACGCT-TCCAGTACACTTTACT
1 TAAAAAACGCCGCTAATCTCCTATATATTCAACTAAAACGACGACG-TGTACAGTAAACTTTAAT
* * *
74038138 TCTATTGCGGTGTTTTTCAAAA-CGCCACTAATACTCTATCCAACTAAAACGACGCCGTTTTCTT
65 TATATTGCGGCGTTTTT-AAAAGCGCCACTAATACCCTAT-CAACTAAAACGACGCCGTTTTCTT
* * * * *
74038202 TCAACTATACTGTTTTTTGCGGCGTTTTTT
128 TAAACTAAACTGTCTTCTGCGGCGTTTTTA
*
74038232 TAAAAAACGCCACTAATCTC
1 TAAAAAACGCCGCTAATCTC
74038252 TTAATTTTTA
Statistics
Matches: 150, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
157 18 0.12
158 126 0.84
159 6 0.04
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.34
Consensus pattern (157 bp):
TAAAAAACGCCGCTAATCTCCTATATATTCAACTAAAACGACGACGTGTACAGTAAACTTTAATT
ATATTGCGGCGTTTTTAAAAGCGCCACTAATACCCTATCAACTAAAACGACGCCGTTTTCTTTAA
ACTAAACTGTCTTCTGCGGCGTTTTTA
Found at i:74039025 original size:15 final size:14
Alignment explanation
Indices: 74039005--74039044 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
74038995 ATTAAACTCT
74039005 AACCCTTAAACCATA
1 AACCCTT-AACCATA
*
74039020 AACCCTTAACCCTA
1 AACCCTTAACCATA
*
74039034 AACCCCTAACC
1 AACCCTTAACC
74039045 CCTAATCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 16 0.70
15 7 0.30
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.17
Consensus pattern (14 bp):
AACCCTTAACCATA
Found at i:74039208 original size:14 final size:14
Alignment explanation
Indices: 74039173--74039202 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
74039163 TTAAATCCTG
*
74039173 AATCATATACCCTA
1 AATCATAAACCCTA
74039187 AATCATAAACCCTA
1 AATCATAAACCCTA
74039201 AA
1 AA
74039203 CTATAATGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (14 bp):
AATCATAAACCCTA
Found at i:74039713 original size:41 final size:40
Alignment explanation
Indices: 74039667--74039759 Score: 116
Period size: 41 Copynumber: 2.3 Consensus size: 40
74039657 TTTCTCCAAG
* *
74039667 GCACCGCTAATGGTCAAGC-TATAGTGGCGTTTCTCATATAA
1 GCACCGCTAATGCTCAA-CATATAGCGGCGTTTC-CATATAA
* *
74039708 GCACCGCTAATTCTCAACATATAGCGGCGTTTCCTTATAA
1 GCACCGCTAATGCTCAACATATAGCGGCGTTTCCATATAA
*
74039748 GCGCCGCTAATG
1 GCACCGCTAATG
74039760 TTAGTTTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
40 17 0.38
41 28 0.62
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
GCACCGCTAATGCTCAACATATAGCGGCGTTTCCATATAA
Found at i:74039821 original size:40 final size:40
Alignment explanation
Indices: 74039746--74039837 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
74039736 GTTTCCTTAT
* * * *
74039746 AAGCGCCGCTAATGTTAGTTTTTTAGTGGCATTTTTGTGG
1 AAGCGCCACTAATGCTACTTTTTTAGTGGCATTTTTGTGA
* *
74039786 AAGCGCCACTAATGCT-CTTTTTTAGTGGCCTTTTTTGTTA
1 AAGCGCCACTAATGCTACTTTTTTAGTGG-CATTTTTGTGA
*
74039826 AAACGCCACTAA
1 AAGCGCCACTAA
74039838 AAGCGCCGCT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 11 0.25
40 33 0.75
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (40 bp):
AAGCGCCACTAATGCTACTTTTTTAGTGGCATTTTTGTGA
Found at i:74048450 original size:18 final size:18
Alignment explanation
Indices: 74048427--74048462 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
74048417 AATTAATTAA
74048427 AAATTAATTA-TTTTAATT
1 AAATT-ATTATTTTTAATT
74048445 AAATTATTATTTTTAATT
1 AAATTATTATTTTTAATT
74048463 CGATTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
AAATTATTATTTTTAATT
Found at i:74053332 original size:20 final size:20
Alignment explanation
Indices: 74053309--74053361 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
74053299 AAACTTATTC
74053309 ACTTACTCGA-TTACTTAAAT
1 ACTTACT-GACTTACTTAAAT
*
74053329 ACTTACTTACTTACTTAAAT
1 ACTTACTGACTTACTTAAAT
* *
74053349 AATTACTTACTTA
1 ACTTACTGACTTA
74053362 ATCAAATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 1 0.03
20 29 0.97
ACGTcount: A:0.36, C:0.19, G:0.02, T:0.43
Consensus pattern (20 bp):
ACTTACTGACTTACTTAAAT
Found at i:74053334 original size:12 final size:12
Alignment explanation
Indices: 74053319--74053363 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
74053309 ACTTACTCGA
*
74053319 TTACTTAAATAC
1 TTACTTAATTAC
*
74053331 TTACTTACTTAC
1 TTACTTAATTAC
**
74053343 TTAAATAATTAC
1 TTACTTAATTAC
74053355 TTACTTAAT
1 TTACTTAAT
74053364 CAAATTTATT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.47
Consensus pattern (12 bp):
TTACTTAATTAC
Found at i:74053368 original size:20 final size:20
Alignment explanation
Indices: 74053325--74053368 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
74053315 TCGATTACTT
* * *
74053325 AAATACTTACTTACTTACTT
1 AAATAATTACTTACTTAATC
74053345 AAATAATTACTTACTTAATC
1 AAATAATTACTTACTTAATC
74053365 AAAT
1 AAAT
74053369 TTATTAATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (20 bp):
AAATAATTACTTACTTAATC
Found at i:74053683 original size:53 final size:54
Alignment explanation
Indices: 74053570--74053808 Score: 260
Period size: 55 Copynumber: 4.5 Consensus size: 54
74053560 ATTTCTATGA
* * * *
74053570 CTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAACTTACCATTGCCATGT
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGC
*
74053619 CTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTCACCAATGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGC
* * * * *
74053672 CTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATGT
1 CTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTTACCAATGCCATGC
* *
74053727 CTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAACCTTACCAATTGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTTACCAA-TGCCATGC
* *
74053782 CTTGGCATTGTCTTACATGGTATCCTT
1 CTTGACATGGTCTTACATGGTATCCTT
74053809 AAACCCTAAT
Statistics
Matches: 158, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 23 0.15
50 1 0.01
52 2 0.01
53 49 0.31
54 10 0.06
55 71 0.45
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (54 bp):
CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATGCCATGC
Found at i:74054837 original size:16 final size:16
Alignment explanation
Indices: 74054816--74054847 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
74054806 CTTAGTACCT
74054816 TTGTGAACTAGAACAC
1 TTGTGAACTAGAACAC
74054832 TTGTGAACTAGAACAC
1 TTGTGAACTAGAACAC
74054848 ACATTTTACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.25
Consensus pattern (16 bp):
TTGTGAACTAGAACAC
Found at i:74060873 original size:16 final size:16
Alignment explanation
Indices: 74060849--74060879 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74060839 GTTCTTCACT
74060849 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
74060865 TACTTACTTACTTAA
1 TACTCACTTACTTAA
74060880 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:74060885 original size:20 final size:20
Alignment explanation
Indices: 74060846--74060885 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
74060836 AAAGTTCTTC
* *
74060846 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
74060866 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
74060886 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:74060997 original size:23 final size:24
Alignment explanation
Indices: 74060958--74061002 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
74060948 TTTGCTCTTG
74060958 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTTGTCTTACCTTTT
74060982 TAGCAT-AACTCT-TCTTACCTT
1 TAGCATGAACT-TGTCTTACCTT
74061003 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.44
Consensus pattern (24 bp):
TAGCATGAACTTGTCTTACCTTTT
Found at i:74061266 original size:55 final size:53
Alignment explanation
Indices: 74061076--74061330 Score: 234
Period size: 55 Copynumber: 4.8 Consensus size: 53
74061066 ACACGGGTAC
* * * * * *
74061076 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCCTT---TTGA-AA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAAGAA
* * *
74061125 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAAGAA
* * *
74061178 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTAAAGTAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTT-AAG-AA
* ***
74061233 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTT-AGAAA
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAAG-AA
* * * *
74061286 CCTTACCCATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTA-CCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT
74061331 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
49 40 0.23
52 4 0.02
53 46 0.27
54 6 0.04
55 73 0.43
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAAGAA
Found at i:74061267 original size:108 final size:110
Alignment explanation
Indices: 74061123--74061323 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
74061113 ATCCTTTTGA
* *
74061123 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCA-CCA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCCA
74061185 ATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTAAAGT
65 ATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTAAAGT
* * * *
74061231 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCCAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCCAA
74061296 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
74061324 TATCCTTAAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.58
109 3 0.04
110 31 0.37
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCCAA
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTAAAGT
Found at i:74071070 original size:23 final size:23
Alignment explanation
Indices: 74071050--74071103 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
74071040 AAAGCACACT
74071050 GGCGTGTGCATTGTCTCCACATG
1 GGCGTGTGCATTGTCTCCACATG
*
74071073 GGCGTGTGCATTGTCTCCACAAG
1 GGCGTGTGCATTGTCTCCACATG
*
74071096 GGTGTGTG
1 GGCGTGTG
74071104 AGTCTTAACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.13, C:0.22, G:0.35, T:0.30
Consensus pattern (23 bp):
GGCGTGTGCATTGTCTCCACATG
Found at i:74073534 original size:2 final size:2
Alignment explanation
Indices: 74073527--74073552 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
74073517 CACTAAGAGC
74073527 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
74073553 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:74073612 original size:40 final size:40
Alignment explanation
Indices: 74073563--74073638 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
74073553 TATATATATA
*
74073563 TAGCTGAAGCTATCACAAA-TCGCACACCAAGTGCCACATT
1 TAGCCGAAGCTATCACAAACT-GCACACCAAGTGCCACATT
** *
74073603 TAGCCGAAGCTATTTCAAACTGCACACTAAGTGCCA
1 TAGCCGAAGCTATCACAAACTGCACACCAAGTGCCA
74073639 TTCTTAGCTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 30 0.97
41 1 0.03
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (40 bp):
TAGCCGAAGCTATCACAAACTGCACACCAAGTGCCACATT
Found at i:74080342 original size:55 final size:53
Alignment explanation
Indices: 74080217--74080414 Score: 146
Period size: 55 Copynumber: 3.7 Consensus size: 53
74080207 TAGAGTTTAG
* * * * * * * * *
74080217 GGATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTCTACAAGGCAA
1 GGATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTAC-ATAAGGCAA
* * * *
74080271 GAAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCCAA
1 GGATACCATGTAAGACCATGTCAAGACATGGCAATGAT-AACTAC-ATAAGG-CAA
* * * * * * * *
74080327 -GATCCCATGTAAGACCATGCCGAGGCATGGCAATGGTGAGTTCATAAGGCAA
1 GGATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAA
* *
74080379 GGATACCACGTAAGACCATGTCAAGACATGACAATG
1 GGATACCATGTAAGACCATGTCAAGACATGGCAATG
74080415 GTAAGTTTAA
Statistics
Matches: 112, Mismatches: 29, Indels: 7
0.76 0.20 0.05
Matches are distributed among these distances:
52 3 0.03
53 35 0.31
54 33 0.29
55 38 0.34
56 3 0.03
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.19
Consensus pattern (53 bp):
GGATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAA
Found at i:74080397 original size:53 final size:54
Alignment explanation
Indices: 74080217--74080421 Score: 198
Period size: 53 Copynumber: 3.8 Consensus size: 54
74080207 TAGAGTTTAG
* * * *
74080217 GGATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTCTACAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCTATAAGGCAA
* * * * * * * * *
74080271 GAAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCCAA
1 GGATACCATGTAAGACCATGCCAAGACATGACAATGGT-AAGTTCTATAAGG-CAA
* * * * *
74080327 -GATCCCATGTAAGACCATGCCGAGGCATGGCAATGGTGAGTTC-ATAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCTATAAGGCAA
* *
74080379 GGATACCACGTAAGACCATGTCAAGACATGACAATGGTAAGTT
1 GGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTT
74080422 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 30, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
52 3 0.03
53 41 0.35
54 33 0.28
55 38 0.32
56 3 0.03
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (54 bp):
GGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCTATAAGGCAA
Found at i:74080469 original size:49 final size:49
Alignment explanation
Indices: 74080411--74080514 Score: 192
Period size: 49 Copynumber: 2.1 Consensus size: 49
74080401 AAGACATGAC
*
74080411 AATGG-TAAGTTTAAAAAGGAAAGGTACTTGTGTATCCTTAGTATTCCA
1 AATGGTTAAGTTTAAAAAGGAAAGGTACCTGTGTATCCTTAGTATTCCA
74080459 AATGGTTAAGTTTAAAAAGGAAAGGTACCTGTGTATCCTTAGTATTCCA
1 AATGGTTAAGTTTAAAAAGGAAAGGTACCTGTGTATCCTTAGTATTCCA
74080508 AATGGTT
1 AATGGTT
74080515 CAACGGAAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 5 0.09
49 49 0.91
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.34
Consensus pattern (49 bp):
AATGGTTAAGTTTAAAAAGGAAAGGTACCTGTGTATCCTTAGTATTCCA
Found at i:74088777 original size:28 final size:27
Alignment explanation
Indices: 74088719--74088778 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 27
74088709 ATTTTAATGT
* **
74088719 GTCTTAGTTCATACATGTTTTTAATTT
1 GTCTTAGTTCATACATGTTTTAAATAA
* *
74088746 GTCTTAGTTTATTGCATGTTTTAAATAA
1 GTCTTAGTTCA-TACATGTTTTAAATAA
74088774 GTCTT
1 GTCTT
74088779 TGAGTCAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 10 0.37
28 17 0.63
ACGTcount: A:0.23, C:0.10, G:0.13, T:0.53
Consensus pattern (27 bp):
GTCTTAGTTCATACATGTTTTAAATAA
Found at i:74094601 original size:53 final size:55
Alignment explanation
Indices: 74094539--74094689 Score: 155
Period size: 55 Copynumber: 2.8 Consensus size: 55
74094529 TTAAACTTAC
* *
74094539 CATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G-AACTCAT
1 CATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATCGTAACTCAT
* * * * ** *
74094592 CATTGCCATG-CGTTGGCATGGTCTTACATGGGATCTTTGCATTATCGTAGTTTAT
1 CATTGCCATGTC-TTGACATGGTCTTACATGGTATCCTTGCCTTATCGTAACTCAT
* * * *
74094647 CAATGCCATGTTTTGACATGGTCTTACATGATTTCCTTGCCTT
1 CATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTT
74094690 GTAAAACTTA
Statistics
Matches: 77, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
52 1 0.01
53 37 0.48
54 1 0.01
55 38 0.49
ACGTcount: A:0.19, C:0.22, G:0.19, T:0.40
Consensus pattern (55 bp):
CATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATCGTAACTCAT
Found at i:74094667 original size:55 final size:53
Alignment explanation
Indices: 74094544--74094676 Score: 142
Period size: 53 Copynumber: 2.5 Consensus size: 53
74094534 CTTACCATTT
* * * *
74094544 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCATCATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCCTTGCATTATGAACTCATCAATG
* * ** *
74094597 CCATG-CGTTGGCATGGTCTTACATGGGATCTTTGCATTATCGTAGTTTATCAATG
1 CCATGTC-TTGACATGGTCTTACATGGGATCCTTGCATTAT-G-AACTCATCAATG
*
74094652 CCATGTTTTGACATGGTCTTACATG
1 CCATGTCTTGACATGGTCTTACATG
74094677 ATTTCCTTGC
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
52 1 0.02
53 33 0.51
54 1 0.02
55 30 0.46
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCCTTGCATTATGAACTCATCAATG
Found at i:74102042 original size:53 final size:55
Alignment explanation
Indices: 74101980--74102130 Score: 164
Period size: 55 Copynumber: 2.8 Consensus size: 55
74101970 TTAAACTTAC
* *
74101980 CATTTCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G-AACTCAT
1 CATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATCGTAACTCAT
* * * * ** *
74102033 CATTGCCATG-CGTTGGCATGGTCTTACATGGGATCTTTGCATTATCGTAGTTTAT
1 CATTGCCATGTC-TTGACATGGTCTTACATGGTATCCTTGCCTTATCGTAACTCAT
* * *
74102088 CAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTT
1 CATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTT
74102131 GTAAAACTTA
Statistics
Matches: 78, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
52 1 0.01
53 37 0.47
54 1 0.01
55 38 0.49
56 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.40
Consensus pattern (55 bp):
CATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATCGTAACTCAT
Found at i:74105407 original size:77 final size:75
Alignment explanation
Indices: 74105242--74105410 Score: 169
Period size: 77 Copynumber: 2.2 Consensus size: 75
74105232 ATTTATTCGG
* * * * * * * *
74105242 CTAGCATTGGGTGCAACTTTCGTCAGTTTATCTGACTAGTGCTGGGCACATCATTATATTTTCCA
1 CTAGCACTGGGTGCAAATTTCGTCAATTTATCTGACTAATGCTAGACACATCACTATATTGTCCA
****
74105307 GTTTATTTGA
66 GTTTACCCAA
* * *
74105317 CTAGCGCTAGGTGCAAATCTTCGTCAATTTATCTGACTAATGCTAGACACACTTACTATATCTGT
1 CTAGCACTGGGTGCAAAT-TTCGTCAATTTATCTGACTAATGCTAGACACA-TCACTATAT-TGT
74105382 -CAGTTTACCCAA
63 CCAGTTTACCCAA
74105394 CTAGCACTGGGTGCAAA
1 CTAGCACTGGGTGCAAA
74105411 ACTTATTTAC
Statistics
Matches: 74, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
75 14 0.19
76 28 0.38
77 30 0.41
78 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (75 bp):
CTAGCACTGGGTGCAAATTTCGTCAATTTATCTGACTAATGCTAGACACATCACTATATTGTCCA
GTTTACCCAA
Found at i:74109160 original size:48 final size:49
Alignment explanation
Indices: 74109039--74109167 Score: 154
Period size: 48 Copynumber: 2.7 Consensus size: 49
74109029 TGATGTATGT
* *
74109039 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAAGAGATGAAA
** * * * * *
74109088 GCTAGCATAAGACCTATCTAGGACACGGCATC-AC-CTCAAGATATGCAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CAAGAGATGAAA
74109136 GCTAGTGTAAGACCTGTCTGGGACATGGCATC
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATC
74109168 CGCTTGAGGT
Statistics
Matches: 65, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
47 1 0.02
48 37 0.57
49 27 0.42
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (49 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACCAAGAGATGAAA
Found at i:74110488 original size:21 final size:22
Alignment explanation
Indices: 74110447--74110488 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
74110437 GTCAAGAAGG
74110447 CCACACGGGCATGTCGCCCCTT
1 CCACACGGGCATGTCGCCCCTT
74110469 CCACACGGGCATGT-GCCCCT
1 CCACACGGGCATGTCGCCCCT
74110489 GTTTCAAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.14, C:0.45, G:0.24, T:0.17
Consensus pattern (22 bp):
CCACACGGGCATGTCGCCCCTT
Found at i:74111602 original size:28 final size:29
Alignment explanation
Indices: 74111540--74111685 Score: 151
Period size: 28 Copynumber: 5.2 Consensus size: 29
74111530 TAAACATGTC
** *
74111540 ATGAAAAAGA-AAGCCTTTGTGGTGATAT
1 ATGAAAAAGAGAAGCCTTTGTGGCAATCT
*
74111568 ATG-AAAAGAGAAGCTTTTGTGGCAATCT
1 ATGAAAAAGAGAAGCCTTTGTGGCAATCT
* *
74111596 A-GAAAAA-AGGAAACCTTTATGGCAATCT
1 ATGAAAAAGA-GAAGCCTTTGTGGCAATCT
**
74111624 ATGAAAAAG-GAAGCCTTTGTCACAATCT
1 ATGAAAAAGAGAAGCCTTTGTGGCAATCT
* *
74111652 ATG-AAAAGGGAAGTCTTTGTGGCAATCT
1 ATGAAAAAGAGAAGCCTTTGTGGCAATCT
74111680 ATGAAA
1 ATGAAA
74111686 TGGAAGCCTG
Statistics
Matches: 97, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
27 13 0.13
28 76 0.78
29 8 0.08
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.26
Consensus pattern (29 bp):
ATGAAAAAGAGAAGCCTTTGTGGCAATCT
Found at i:74116756 original size:8 final size:9
Alignment explanation
Indices: 74116723--74116754 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
74116713 ATATAATACA
74116723 TAAAAATAT
1 TAAAAATAT
74116732 TAAAAATAT
1 TAAAAATAT
74116741 TAAAAATAT
1 TAAAAATAT
74116750 TAAAA
1 TAAAA
74116755 TAAATATTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
TAAAAATAT
Found at i:74118059 original size:19 final size:19
Alignment explanation
Indices: 74118031--74118077 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
74118021 GATGTCGGCA
*
74118031 TAGTGTATGCAATTTCTGG
1 TAGTGAATGCAATTTCTGG
74118050 TAGTGAATGCAATTTCTGG
1 TAGTGAATGCAATTTCTGG
74118069 TAGTGAATG
1 TAGTGAATG
74118078 GATTAGTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.26, C:0.09, G:0.28, T:0.38
Consensus pattern (19 bp):
TAGTGAATGCAATTTCTGG
Found at i:74118842 original size:16 final size:16
Alignment explanation
Indices: 74118821--74118851 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74118811 TTTATTATTC
*
74118821 TGTCTTTTGTATTTTA
1 TGTCTTTTATATTTTA
74118837 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
74118852 GATTGTGACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.06, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTA
Found at i:74119552 original size:13 final size:13
Alignment explanation
Indices: 74119534--74119559 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74119524 CATGCAAATT
74119534 AAAGAAAGAAAAG
1 AAAGAAAGAAAAG
74119547 AAAGAAAGAAAAG
1 AAAGAAAGAAAAG
74119560 GAGAAGAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAAAG
Found at i:74124463 original size:47 final size:47
Alignment explanation
Indices: 74124406--74124709 Score: 425
Period size: 47 Copynumber: 6.4 Consensus size: 47
74124396 ATTGATGTAC
* * *
74124406 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
74124453 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
74124502 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
74124549 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
74124596 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
74124643 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
74124690 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
74124710 TCCCGAAGGG
Statistics
Matches: 239, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 197 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:74124587 original size:22 final size:22
Alignment explanation
Indices: 74124560--74124681 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
74124550 CATGTGTATG
74124560 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
74124582 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
74124607 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
74124629 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
74124654 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
74124676 TGTGAT
1 TGTGAT
74124682 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:74130971 original size:31 final size:31
Alignment explanation
Indices: 74130894--74130978 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
74130884 TTTAAAATGC
* * *
74130894 AACAAGTACTTTGTACCGATGTTTATATTGT
1 AACAAGTACTATGTATCGGTGTTTATATTGT
*
74130925 ATCAAGTACTATGTATCGGTGTTTATATTGT
1 AACAAGTACTATGTATCGGTGTTTATATTGT
*
74130956 AACAAGTACTATGTATTGGTGTT
1 AACAAGTACTATGTATCGGTGTT
74130979 GGATATCTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (31 bp):
AACAAGTACTATGTATCGGTGTTTATATTGT
Found at i:74132554 original size:27 final size:27
Alignment explanation
Indices: 74132524--74132581 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
74132514 AGATAATTAA
74132524 AATAA-AATCCTAAAATTAAATAATCCT
1 AATAATAATCCTAAAATT-AATAATCCT
* * *
74132551 AATAATTATCCTAATATTAATTATCCT
1 AATAATAATCCTAAAATTAATAATCCT
74132578 AATA
1 AATA
74132582 TAAGTAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 17 0.63
28 10 0.37
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (27 bp):
AATAATAATCCTAAAATTAATAATCCT
Found at i:74132573 original size:15 final size:15
Alignment explanation
Indices: 74132553--74132582 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
74132543 ATAATCCTAA
74132553 TAATTATCCTAATAT
1 TAATTATCCTAATAT
74132568 TAATTATCCTAATAT
1 TAATTATCCTAATAT
74132583 AAGTAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:74136130 original size:17 final size:16
Alignment explanation
Indices: 74136080--74136177 Score: 85
Period size: 17 Copynumber: 6.1 Consensus size: 16
74136070 TTATTAATAT
*
74136080 AATAAAAT-AATTAAA
1 AATAAAATAAAATAAA
* **
74136095 AATAAAA-CAAATTGA
1 AATAAAATAAAATAAA
74136110 AATAAAATAAAATAAGA
1 AATAAAATAAAATAA-A
*
74136127 AATAAAATAAGAA-AAT
1 AATAAAATAA-AATAAA
*
74136143 AATAATAATAAAATAAT
1 AATAA-AATAAAATAAA
74136160 AATAAAATAGAAATAAA
1 AATAAAATA-AAATAAA
74136177 A
1 A
74136178 TTTAAAATTA
Statistics
Matches: 68, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
15 18 0.26
16 15 0.22
17 33 0.49
18 2 0.03
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.21
Consensus pattern (16 bp):
AATAAAATAAAATAAA
Found at i:74136157 original size:11 final size:10
Alignment explanation
Indices: 74136075--74136178 Score: 77
Period size: 11 Copynumber: 9.8 Consensus size: 10
74136065 GAATTTTATT
*
74136075 AATATAATAA
1 AATAAAATAA
*
74136085 AAT-AATTAAA
1 AATAAAAT-AA
*
74136095 AATAAAACAA
1 AATAAAATAA
* *
74136105 ATTGAAATAA
1 AATAAAATAA
74136115 AATAAAATAAGA
1 AATAAAAT-A-A
74136127 AATAAAATAA
1 AATAAAATAA
74136137 GAA-AATAATAA
1 -AATAA-AATAA
74136148 TAATAAAATAA
1 -AATAAAATAA
74136159 TAATAAAATAGA
1 -AATAAAATA-A
74136171 AATAAAAT
1 AATAAAAT
74136179 TTAAAATTAA
Statistics
Matches: 76, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
9 2 0.03
10 26 0.34
11 36 0.47
12 12 0.16
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.23
Consensus pattern (10 bp):
AATAAAATAA
Found at i:74136173 original size:6 final size:5
Alignment explanation
Indices: 74136075--74136178 Score: 77
Period size: 5 Copynumber: 19.6 Consensus size: 5
74136065 GAATTTTATT
* * * * *
74136075 AATAT AATAA AAT-A ATTAAA AATAA AACAA ATTGA AATAA AATAA AATAAGA
1 AATAA AATAA AATAA AAT-AA AATAA AATAA AATAA AATAA AATAA AAT-A-A
74136127 AATAA AATAA GAA-AA TAATAA TAATAA AATAA TAATAA AATAGA AATAA
1 AATAA AATAA -AATAA -AATAA -AATAA AATAA -AATAA AATA-A AATAA
74136176 AAT
1 AAT
74136179 TTAAAATTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
4 3 0.04
5 49 0.60
6 25 0.31
7 4 0.05
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.23
Consensus pattern (5 bp):
AATAA
Found at i:74149874 original size:40 final size:40
Alignment explanation
Indices: 74149792--74149886 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
74149782 CCATCTTTGT
* * * *
74149792 CCAACCCAACACACC-A-TGTGGGGATAAAATCGACCCAC
1 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCAAC
* * *
74149830 CCAACCTTACACACCAAGTATGGGGGTAAAATCAACCAAT
1 CCAACCCTACACACCAAGTATGGGGATAAAATCAACCAAC
74149870 CCAACCCTACACACCAA
1 CCAACCCTACACACCAA
74149887 ATGGTACCGT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
38 13 0.28
39 1 0.02
40 33 0.70
ACGTcount: A:0.39, C:0.36, G:0.13, T:0.13
Consensus pattern (40 bp):
CCAACCCTACACACCAAGTATGGGGATAAAATCAACCAAC
Found at i:74151775 original size:31 final size:30
Alignment explanation
Indices: 74151728--74151788 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
74151718 TATTTTATTA
74151728 TTAATTTTGTTATTATTTTAAAGACATTTG
1 TTAATTTTGTTATTATTTTAAAGACATTTG
* * *
74151758 TTAATTTTTTTTATTATTTTAGAGGCATTTG
1 TTAA-TTTTGTTATTATTTTAAAGACATTTG
74151789 CTTGTTAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 4 0.15
31 23 0.85
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.59
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGACATTTG
Found at i:74155835 original size:35 final size:35
Alignment explanation
Indices: 74155796--74155869 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
74155786 GTTTGCTTAA
74155796 ATTCCTATTTAGTCCTTAAA-TCGAGACTAATTTTT
1 ATTCCTATTTAGTCCTTAAACT-GAGACTAATTTTT
74155831 ATTCCTATTTAGTCCTTAAACTGAGACTAATTTTT
1 ATTCCTATTTAGTCCTTAAACTGAGACTAATTTTT
74155866 ATTC
1 ATTC
74155870 TTCTCATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 37 0.97
36 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.08, T:0.46
Consensus pattern (35 bp):
ATTCCTATTTAGTCCTTAAACTGAGACTAATTTTT
Found at i:74159607 original size:15 final size:14
Alignment explanation
Indices: 74159559--74159613 Score: 60
Period size: 15 Copynumber: 3.9 Consensus size: 14
74159549 ATGTTGTGTA
74159559 TATATTATTATTAC
1 TATATTATTATTAC
*
74159573 TA-ATTATTATTGC
1 TATATTATTATTAC
*
74159586 TAGTATTATTATAAC
1 TA-TATTATTATTAC
74159601 TATTATTA-TATTA
1 TA-TATTATTATTA
74159614 GTGTATATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
13 12 0.35
14 6 0.18
15 16 0.47
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (14 bp):
TATATTATTATTAC
Found at i:74161458 original size:12 final size:12
Alignment explanation
Indices: 74161438--74161473 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
74161428 ATTCATTTGA
*
74161438 CATTTATGCATT
1 CATTCATGCATT
74161450 CATTCATGCATT
1 CATTCATGCATT
*
74161462 CATTCATTCATT
1 CATTCATGCATT
74161474 GCATATCTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:74170203 original size:75 final size:74
Alignment explanation
Indices: 74169718--74170582 Score: 1126
Period size: 72 Copynumber: 11.7 Consensus size: 74
74169708 ATGTTGTTAC
** *
74169718 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGT
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
74169783 AATTTCAAT
66 AATTTCAAT
* *
74169792 TTCTGTTTTC--AAAATTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
74169855 AATTTCAAT
66 AATTTCAAT
** * *
74169864 TTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 TTCTG-TTTTC--AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
74169929 GGTAATTTCAAT
63 GGTAATTTCAAT
* * *
74169941 TTCTGTTTTC--AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACATTGAGGT
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
74170004 ATTTTCAAT
66 AATTTCAAT
** * * *
74170013 TTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGA
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGA
*
74170075 GGTATTTTCAAT
63 GGTAATTTCAAT
74170087 TTCTGTCTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
1 TTCTGT-TTTC-AAAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA
74170152 GGTAATTTCAAT
63 GGTAATTTCAAT
*
74170164 TTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 TTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
74170229 TAATTTCAAT
65 TAATTTCAAT
* *
74170239 TTCTATTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
*
74170302 ATTTTCAAT
66 AATTTCAAT
* ** * * *
74170311 TTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGG
1 TTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
74170376 TAATTTCGAT
65 TAATTTCAAT
** ** * *
74170386 TTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
1 TTCTGTT-TTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
74170451 TAATTTCAAT
65 TAATTTCAAT
* *
74170461 TTCTGTTTTC--AAAAGTCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTT-ATGG
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGA-GG
*
74170522 TATTTTCAAT
65 TAATTTCAAT
* **
74170532 TTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTCTG-TTTTC-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
74170583 TGGGTCATAC
Statistics
Matches: 705, Mismatches: 62, Indels: 46
0.87 0.08 0.06
Matches are distributed among these distances:
70 1 0.00
71 48 0.07
72 240 0.34
73 9 0.01
74 40 0.06
75 206 0.29
76 35 0.05
77 89 0.13
78 5 0.01
79 31 0.04
80 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (74 bp):
TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
AATTTCAAT
Found at i:74170297 original size:147 final size:146
Alignment explanation
Indices: 74169718--74170582 Score: 1159
Period size: 147 Copynumber: 5.8 Consensus size: 146
74169708 ATGTTGTTAC
*
74169718 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGT
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGT
*
74169783 AATTTCAATTTCTGTTTTCAAAATTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
66 AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
74169848 TTGAGGTAATTTCAAT
131 TTGAGGTAATTTCAAT
**
74169864 TTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 TTCTG-TTTTC--AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
*
74169929 GGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGAC
63 GGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* *
74169994 ACATTGAGGTATTTTCAAT
128 ACGTTGAGGTAATTTCAAT
** *
74170013 TTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGA
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG---ACACGCTGA
*
74170075 GGTATTTTCAATTTCTGTCTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
63 GGTAATTTCAATTTCTGT-TTTC----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTC
74170140 AAGACACGTTGAGGTAATTTCAAT
123 AAGACACGTTGAGGTAATTTCAAT
* * *
74170164 TTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 TTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
*
74170229 TAATTTCAATTTCTATTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
65 TAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAC
*
74170294 GTTGAGGTATTTTCAAT
130 GTTGAGGTAATTTCAAT
* ** *
74170311 TTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCAGGACACGCTGAGG
1 TTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGG
* ** * ** *
74170376 TAATTTCGATTTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
65 TAATTTCAATTTCTGTT-T--TCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA
*
74170441 CACGCTGAGGTAATTTCAAT
127 CACGTTGAGGTAATTTCAAT
* * * *
74170461 TTCTGTTTTC--AAAAGTCAACT-ATATTGCGAGAAATGAGTTGAGCCTCAAGACATG-TTATGG
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA-GG
* * * **
74170522 TATTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
65 TAATTTCAATTTCTG-TTTTC---AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCT
74170583 TGGGTCATAC
Statistics
Matches: 647, Mismatches: 49, Indels: 45
0.87 0.07 0.06
Matches are distributed among these distances:
143 2 0.00
144 38 0.06
145 2 0.00
146 75 0.12
147 193 0.30
148 6 0.01
149 138 0.21
150 61 0.09
151 68 0.11
152 27 0.04
154 36 0.06
155 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (146 bp):
TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGT
AATTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTAATTTCAAT
Found at i:74170706 original size:94 final size:93
Alignment explanation
Indices: 74170545--74170892 Score: 310
Period size: 94 Copynumber: 3.9 Consensus size: 93
74170535 TGCCTTTCAA
* * * * *
74170545 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCATACGCTGAGGTGTTTTCCAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAAT
74170610 TTCTGTTCTTCAATTTCTGTTTTTTTTTT
66 TTCTGTT-TTCAATTTCTGTTTTTTTTTT
* **
74170639 AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGC-----T--A-
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAAT
*
74170696 -----TTTTCAATTTCTG-TTTTTTTTC
66 TTCTGTTTTCAATTTCTGTTTTTTTTTT
** * *
74170718 AAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-TCACATG-TCGAGGTATTTTCA
1 AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCT-GAGCTATTTTCA
** * *
74170781 AAATCTGCTTTTCAA-----G--TTATGTTT
64 ATTTCTG-TTTTCAATTTCTGTTTTTTTTTT
* *
74170805 CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAAT
* *
74170870 TTCTGTTTTTAATGTCTGTTTTT
66 TTCTGTTTTCAATTTCTGTTTTT
74170893 AGAGAGTCAA
Statistics
Matches: 204, Mismatches: 25, Indels: 51
0.73 0.09 0.18
Matches are distributed among these distances:
78 1 0.00
79 23 0.11
80 43 0.21
81 2 0.01
84 1 0.00
86 40 0.20
87 32 0.16
88 2 0.01
89 1 0.00
91 1 0.00
93 9 0.04
94 49 0.24
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.39
Consensus pattern (93 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGCTATTTTCAAT
TTCTGTTTTCAATTTCTGTTTTTTTTTT
Found at i:74170751 original size:80 final size:79
Alignment explanation
Indices: 74170618--74170879 Score: 314
Period size: 80 Copynumber: 3.2 Consensus size: 79
74170608 ATTTCTGTTC
* *
74170618 TTCAATTTCTGTTTTTTTTTTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTC
1 TTCAATTTCTG-TTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
74170683 ACGTGCTGAGCTATT
65 ACGTGCTGAGCTATT
**
74170698 TTCAATTTCTGTTTTTTTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-TC
1 TTCAATTTCTGTTTTTTTTCAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
* *
74170762 ACATG-TCGAGGTATT
65 ACGTGCT-GAGCTATT
* *
74170777 TTCAAAATCTGCTTTTCAAGTTATGTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTC--AAT-TTCTGTT----TT-T-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
74170841 CTTGGCTCACGCGCTGAGCTATT
57 CTTGGCTCACGTGCTGAGCTATT
74170864 TTCAATTTCTGTTTTT
1 TTCAATTTCTGTTTTT
74170880 AATGTCTGTT
Statistics
Matches: 154, Mismatches: 15, Indels: 27
0.79 0.08 0.14
Matches are distributed among these distances:
78 1 0.01
79 31 0.20
80 45 0.29
81 3 0.02
82 5 0.03
84 5 0.03
85 3 0.02
86 35 0.23
87 21 0.14
88 5 0.03
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (79 bp):
TTCAATTTCTGTTTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CGTGCTGAGCTATT
Found at i:74172043 original size:23 final size:23
Alignment explanation
Indices: 74172013--74172081 Score: 113
Period size: 23 Copynumber: 3.0 Consensus size: 23
74172003 TTAGTTGCCG
*
74172013 GCGGTGGTCGGCGGCGACGGCTA
1 GCGGTGGTCGGCGGCGACGGCCA
74172036 GCGGTGGTCGGCGGCGACGGCCA
1 GCGGTGGTCGGCGGCGACGGCCA
74172059 GCGGTGGTCGGCGGC-AGCGGCCA
1 GCGGTGGTCGGCGGCGA-CGGCCA
74172082 TCGAAGGTCC
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
22 1 0.02
23 43 0.98
ACGTcount: A:0.09, C:0.29, G:0.52, T:0.10
Consensus pattern (23 bp):
GCGGTGGTCGGCGGCGACGGCCA
Found at i:74172090 original size:23 final size:23
Alignment explanation
Indices: 74172018--74172090 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
74172008 TGCCGGCGGT
* **
74172018 GGTCGGCGGCGACGGCTAGCGGT
1 GGTCGGCGGCGACGGCCAGCGAA
**
74172041 GGTCGGCGGCGACGGCCAGCGGT
1 GGTCGGCGGCGACGGCCAGCGAA
*
74172064 GGTCGGCGGC-AGCGGCCATCGAA
1 GGTCGGCGGCGA-CGGCCAGCGAA
74172087 GGTC
1 GGTC
74172091 CAGTGACAAG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
22 1 0.02
23 44 0.98
ACGTcount: A:0.11, C:0.29, G:0.49, T:0.11
Consensus pattern (23 bp):
GGTCGGCGGCGACGGCCAGCGAA
Found at i:74172700 original size:18 final size:16
Alignment explanation
Indices: 74172670--74172703 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
74172660 CTAATACGTA
74172670 TTTATATTATATGTAT
1 TTTATATTATATGTAT
74172686 TTTATATATATTATGTAT
1 TTTATAT-TA-TATGTAT
74172704 ATATTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 2 0.12
18 7 0.44
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (16 bp):
TTTATATTATATGTAT
Found at i:74183121 original size:13 final size:13
Alignment explanation
Indices: 74183089--74183122 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
74183079 ACCCTGATTC
74183089 TATAAAAAACTTA
1 TATAAAAAACTTA
*
74183102 TAAAAAAAACTTA
1 TATAAAAAACTTA
*
74183115 TTTAAAAA
1 TATAAAAA
74183123 GAAGAAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (13 bp):
TATAAAAAACTTA
Found at i:74183518 original size:20 final size:20
Alignment explanation
Indices: 74183487--74183535 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
74183477 AATTCAAAAA
* *
74183487 CGATTTAAACATTTTTAACT
1 CGATTGAAACATTTTTAAAT
*
74183507 CTATTGAAACATTTTTAAAT
1 CGATTGAAACATTTTTAAAT
74183527 CGATTGAAA
1 CGATTGAAA
74183536 AATTGTAACA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (20 bp):
CGATTGAAACATTTTTAAAT
Found at i:74186212 original size:16 final size:16
Alignment explanation
Indices: 74186191--74186244 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
74186181 TTTGGTTCAC
74186191 TGTAATAGAATAGAGT
1 TGTAATAGAATAGAGT
*
74186207 TGTAATTGAATAGAGT
1 TGTAATAGAATAGAGT
* *
74186223 TGTATTGGAATAGAGT
1 TGTAATAGAATAGAGT
74186239 TGTAAT
1 TGTAAT
74186245 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (16 bp):
TGTAATAGAATAGAGT
Found at i:74186445 original size:26 final size:25
Alignment explanation
Indices: 74186398--74186449 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
74186388 ATGATTACTG
*
74186398 TTATTGTTATTAAATTTTAATAAAA
1 TTATTGTTAATAAATTTTAATAAAA
*
74186423 TTATTGTTAAATATATTTTAATAAAA
1 TTATTGTT-AATAAATTTTAATAAAA
74186449 T
1 T
74186450 AATAATAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (25 bp):
TTATTGTTAATAAATTTTAATAAAA
Found at i:74186590 original size:23 final size:21
Alignment explanation
Indices: 74186559--74186601 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
74186549 TTAAATATGA
74186559 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
74186582 ATTATAAAAATAATATATAA
1 ATTAAAAAAATAATATATAA
74186602 CCTACTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
23 8 0.42
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:74196137 original size:53 final size:53
Alignment explanation
Indices: 74196052--74196257 Score: 209
Period size: 55 Copynumber: 3.8 Consensus size: 53
74196042 GGTATCATTT
* *
74196052 TGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTA
1 TGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTA
* * * *
74196106 TG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTAA
1 TGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTA
* * * * * *
74196159 TAGTAACTTATCAATTCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA
1 T-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTA
* * *
74196214 -GAAACCTTACCAATTTCCATGCCTTGGCATGGTCTTACACGGTA
1 TGAAA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA
74196258 TTCTTAAACC
Statistics
Matches: 124, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
52 2 0.02
53 46 0.37
54 11 0.09
55 63 0.51
56 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (53 bp):
TGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTA
Found at i:74196198 original size:55 final size:53
Alignment explanation
Indices: 74196055--74196199 Score: 175
Period size: 53 Copynumber: 2.7 Consensus size: 53
74196045 ATCATTTTGA
* * * *
74196055 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCTAATG
* *
74196108 AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTAATAG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCC-TTGCCTAAT-G
* * *
74196162 TAACTTATCAATTCCATGTCTTGACATGGTCTTACATG
1 -AACTCACCAATGCCATGTCTTGACATGGTCTTACATG
74196200 ATTTCCTTGC
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
52 2 0.03
53 43 0.55
54 1 0.01
55 32 0.41
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGAGCCTTGCCTAATG
Found at i:74198606 original size:28 final size:28
Alignment explanation
Indices: 74198564--74198619 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
74198554 GGATAATGAT
*
74198564 GATCTCAAGTTTGAGGATCATATACATA
1 GATCTCAAGTCTGAGGATCATATACATA
74198592 GATCTCAAGTCTGAGGATCATATACATA
1 GATCTCAAGTCTGAGGATCATATACATA
74198620 TTAATCACTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (28 bp):
GATCTCAAGTCTGAGGATCATATACATA
Found at i:74199984 original size:21 final size:22
Alignment explanation
Indices: 74199959--74200000 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
74199949 TCTTTTTATG
*
74199959 TTTATTATTATTA-TTTATTTA
1 TTTATTAATATTATTTTATTTA
74199980 TTTATTAATATTATTTTATTT
1 TTTATTAATATTATTTTATTT
74200001 TATTATGCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTATTAATATTATTTTATTTA
Found at i:74199986 original size:18 final size:18
Alignment explanation
Indices: 74199954--74200006 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
74199944 TAATTTCTTT
74199954 TTATGTTTA-TTATTATTA
1 TTAT-TTTATTTATTATTA
*
74199972 TT-TATTTATTTATTAATA
1 TTAT-TTTATTTATTATTA
74199990 TTATTTTATTTTATTAT
1 TTATTTTA-TTTATTAT
74200007 GCTTACTGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 5 0.17
18 16 0.55
19 8 0.28
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (18 bp):
TTATTTTATTTATTATTA
Found at i:74201601 original size:18 final size:18
Alignment explanation
Indices: 74201570--74201627 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
74201560 AGCCCATTTG
* *
74201570 TTTTTATGTCTATTTTTC
1 TTTTTATATTTATTTTTC
*
74201588 TTTTTCTATTTATTTTTC
1 TTTTTATATTTATTTTTC
*
74201606 TTTTTATGTTTATTTTGTC
1 TTTTTATATTTATTTT-TC
74201625 TTT
1 TTT
74201628 ATACTTTGAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 29 0.85
19 5 0.15
ACGTcount: A:0.10, C:0.09, G:0.05, T:0.76
Consensus pattern (18 bp):
TTTTTATATTTATTTTTC
Found at i:74207373 original size:100 final size:101
Alignment explanation
Indices: 74207251--74207533 Score: 342
Period size: 100 Copynumber: 2.8 Consensus size: 101
74207241 TTAAAATTTT
*
74207251 TATTGATACTATCAACCCATAATATAACCAATTAAAATACTTCTATTAAACTGAGAAAAAAATTA
1 TATTGATACTAT-AATCCATAATATAACCAATTAAAATACTTCTATTAAACTGAGAAAAAAATTA
*
74207316 AAAAAAAATTAAAAGTCAATCCATAATTGC-GACATTG
65 AAAAAAAATTAAAAGTCAATCCATAATT-CTGACAGTG
* **
74207353 TATTGATACTAT-ATCCATAATATAACCAATTAAAGTACTTCTATTAAACCAAGAAAAAAATT-A
1 TATTGATACTATAATCCATAATATAACCAATTAAAATACTTCTATTAAACTGAGAAAAAAATTAA
* **
74207416 GAAAAAATTAAAAGTCAATCCATAATTCTGTTAGTG
66 AAAAAAATTAAAAGTCAATCCATAATTCTGACAGTG
* * *
74207452 TGTTGATACTATCAATCCATAATACAACTAATTAAAATTCAATACTTCTATTAAA-TCGAGAAAA
1 TATTGATACTAT-AATCCATAATATAACCAATT--AA---AATACTTCTATTAAACT-GAGAAAA
*
74207516 AAA-TAGAAAAAAATTAAA
59 AAATTAAAAAAAAATTAAA
74207534 CCGAGAAAAA
Statistics
Matches: 155, Mismatches: 16, Indels: 16
0.83 0.09 0.09
Matches are distributed among these distances:
98 1 0.01
99 42 0.27
100 46 0.30
101 17 0.11
102 12 0.08
103 2 0.01
105 1 0.01
106 34 0.22
ACGTcount: A:0.50, C:0.13, G:0.07, T:0.30
Consensus pattern (101 bp):
TATTGATACTATAATCCATAATATAACCAATTAAAATACTTCTATTAAACTGAGAAAAAAATTAA
AAAAAAATTAAAAGTCAATCCATAATTCTGACAGTG
Found at i:74207551 original size:26 final size:27
Alignment explanation
Indices: 74207501--74207557 Score: 80
Period size: 26 Copynumber: 2.1 Consensus size: 27
74207491 CAATACTTCT
* *
74207501 ATTAAATCGAGAAAAAAATAGAAAAAA
1 ATTAAACCGAGAAAAAAATACAAAAAA
*
74207528 ATTAAACCGAG-AAAAATTACAAAAAA
1 ATTAAACCGAGAAAAAAATACAAAAAA
74207554 ATTA
1 ATTA
74207558 GAAAAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.67, C:0.07, G:0.09, T:0.18
Consensus pattern (27 bp):
ATTAAACCGAGAAAAAAATACAAAAAA
Found at i:74212722 original size:830 final size:827
Alignment explanation
Indices: 74211122--74212780 Score: 3079
Period size: 830 Copynumber: 2.0 Consensus size: 827
74211112 AAAGAAGATA
* *
74211122 TTTATTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAATAAAA
1 TTTAGTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAACAAAA
74211187 ATTAGACTTGGTTTAGGGACTATATTGGAATTTAAGAAAACATTGAGTAAAAATTGAAATATTCA
66 ATTAGACTTGGTTTAGGGACTATATTGGAATTTAAGAAAACATTGAGTAAAAATTGAAATATTCA
74211252 ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTTCGTATTTAACGTCATA
131 ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTTCGTATTTAACGTCATA
* *
74211317 CCGAAATTTTCAACTAAAAAGAGGAATGATAAAATCGACGATGAATAGCCCAGAATCCATTGTGT
196 CCAAAATTTTCAACTAAAAAGAGGAATAATAAAATCGACGATGAATAGCCCAGAATCCATTGTGT
74211382 TTATATAATCCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTAATGT
261 TTATATAATCCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTAATGT
74211447 GTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGAATGT
326 GTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGAATGT
74211512 ATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAATTGG
391 ATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAATTGG
*
74211577 ATATTGGTTGCATTTGAAAAGTGAAATCAAACCCTATTAACTGTATCGGGCTGAGTCGGATATAG
456 ATATTGGTTGCATTTGAAAAGTGAAATCAAACCCTATTAACTATATCGGGCTGAGTCGGATATAG
*
74211642 GTGGCATGCCATAGAATAGGAAGAGTTCAAGGATTTCTTCGACTTTGAGTTGATGAGGCATTGGT
521 GTGGCATGCCATAGAATAGGAAGAGTTCAAAGATTTCTTCGACTTTGAGTTGATGAGGCATTGGT
* *
74211707 GCCAATTTGCTTCGGTTTAACCGATGAGACACTGTGTGTCAATTTATATAGCACTGGGCGCAATT
586 GCCAATTTACTTCGGTTTAACCGATGAGACACTGTGTGTCAATTTATATAACACTGGGCGCAATT
74211772 ATTACTTTGGATTTATCCGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGTGTAT
651 ATTACTTTGGATTTATCCGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGTGTAT
74211837 CAGTCCGATATTTGATACTAAAATGGCATGGTATGTGAAAATGAAATGTGAAATATGTTGTGAAC
716 CAGTCCGATATTTGATACTAAAATGGCATGGTATGTGAAAATGAAATGTGAAATATGTTGTGAAC
74211902 AAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
781 AAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
*
74211949 TTTAGTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGTTATTACATGAAAAACAAAA
1 TTTAGTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAACAAAA
* *
74212014 ATTAGTCTTGGTTTAGGGACTATATTGGAATTTAAGCAAACATTGAGTAAAAATTGAAATATTCA
66 ATTAGACTTGGTTTAGGGACTATATTGGAATTTAAGAAAACATTGAGTAAAAATTGAAATATTCA
74212079 ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAA-TTCTGTATTTAACGTCAT
131 ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTTC-GTATTTAACGTCAT
74212143 ACCAAAATTTTCAACTAAAAAG-GGAATAATAAAATCGACGATGAATAGCCCAGAATCCACAGTT
195 ACCAAAATTTTCAACTAAAAAGAGGAATAATAAAATCGACGATGAATAGCCCAGAAT-C-CA--T
* *
74212207 TGTGTTTATATAATTCGAACTAAGTTGTAAATTATTGTATATGGTAAGCATTGGAGGTGAGAATT
256 TGTGTTTATATAATCCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATT
74212272 AATGTGTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATG
321 AATGTGTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATG
74212337 AATGTATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGA
386 AATGTATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGA
*
74212402 ATTGGATATTGGTTGTATTTGAAAAGTGAAATCAAACCCTATTAACTATATCGGGCTGAGTCGGA
451 ATTGGATATTGGTTGCATTTGAAAAGTGAAATCAAACCCTATTAACTATATCGGGCTGAGTCGGA
74212467 TATAGGTGGCATGCCATAGAATAGGAAGAGTTCAAAGATTTCTTCGACTTTGAGTTGATGAGGCA
516 TATAGGTGGCATGCCATAGAATAGGAAGAGTTCAAAGATTTCTTCGACTTTGAGTTGATGAGGCA
* *
74212532 TTGGTGCCAATTTACTTTGGTTTAACCGATGAGACATTGTGTGTCAATTTATATAACACTGGGCG
581 TTGGTGCCAATTTACTTCGGTTTAACCGATGAGACACTGTGTGTCAATTTATATAACACTGGGCG
* *
74212597 CAATTATTATTTTGGATTTATCTGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCG
646 CAATTATTACTTTGGATTTATCCGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCG
* *
74212662 TGTATCAGTCTGATATTTGATACTGAAATGGCATGGTATGTGAAAATGAAATGTGAAATATGTTG
711 TGTATCAGTCCGATATTTGATACTAAAATGGCATGGTATGTGAAAATGAAATGTGAAATATGTTG
74212727 TGAACAAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
776 TGAACAAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
74212779 TT
1 TT
74212781 GTGCCATTGT
Statistics
Matches: 807, Mismatches: 20, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
826 36 0.04
827 207 0.26
828 2 0.00
830 562 0.70
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (827 bp):
TTTAGTTATGACAAAATTCATAGAAACAAAATTAAATAAATCAGGGTATTACATGAAAAACAAAA
ATTAGACTTGGTTTAGGGACTATATTGGAATTTAAGAAAACATTGAGTAAAAATTGAAATATTCA
ATGAGAAATTGAATTGTGTTGTATTGATGTATTTTAATTGTTTTAATTTCGTATTTAACGTCATA
CCAAAATTTTCAACTAAAAAGAGGAATAATAAAATCGACGATGAATAGCCCAGAATCCATTGTGT
TTATATAATCCGAACTAAGTTGTAAATTATTGCATATGGTAAGCATTGGAGGTGAGAATTAATGT
GTTTTACAATTGAATTAAATTCATAGTTGATTGAATTGGATTAATTTGGCATATGTTATGAATGT
ATTGAGTAATTGAAATTGAAATGAATATATGTTTAAATGTGATAATGTGCAAATATGAGAATTGG
ATATTGGTTGCATTTGAAAAGTGAAATCAAACCCTATTAACTATATCGGGCTGAGTCGGATATAG
GTGGCATGCCATAGAATAGGAAGAGTTCAAAGATTTCTTCGACTTTGAGTTGATGAGGCATTGGT
GCCAATTTACTTCGGTTTAACCGATGAGACACTGTGTGTCAATTTATATAACACTGGGCGCAATT
ATTACTTTGGATTTATCCGATGAGGCACTAGGTGTCAAACTAGTGTGTTGGTTGGATCCGTGTAT
CAGTCCGATATTTGATACTAAAATGGCATGGTATGTGAAAATGAAATGTGAAATATGTTGTGAAC
AAATGAAATATATTAGTTATGTACTCATGAATTGAATATGGAATGAG
Found at i:74214675 original size:17 final size:17
Alignment explanation
Indices: 74214653--74214686 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
74214643 ATTAACATAC
74214653 TGCAAGACAATCAGATT
1 TGCAAGACAATCAGATT
74214670 TGCAAGACAATCAGATT
1 TGCAAGACAATCAGATT
74214687 AAACATAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (17 bp):
TGCAAGACAATCAGATT
Found at i:74224738 original size:27 final size:27
Alignment explanation
Indices: 74224708--74224764 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
74224698 TATACAATAA
74224708 GGAGTTTTCAATCATGGTACTTATTGT
1 GGAGTTTTCAATCATGGTACTTATTGT
74224735 GGAGTTTTCAATCATGGTACTTATTGT
1 GGAGTTTTCAATCATGGTACTTATTGT
74224762 GGA
1 GGA
74224765 CTGACTCCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.23, C:0.11, G:0.25, T:0.42
Consensus pattern (27 bp):
GGAGTTTTCAATCATGGTACTTATTGT
Found at i:74225587 original size:11 final size:11
Alignment explanation
Indices: 74225514--74225589 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
74225504 ATTACAAAAA
*
74225514 TAATATTATTT
1 TAATATTAATT
74225525 TAATAGTTTAATAT
1 TAATA--TTAAT-T
74225539 TAA-ATTAAATT
1 TAATATT-AATT
*
74225550 TAATACTTATTT
1 TAATA-TTAATT
*
74225562 TAATAGT-ATT
1 TAATATTAATT
74225572 T--TATTAATT
1 TAATATTAATT
74225581 TAATATTAA
1 TAATATTAA
74225590 AGTGATTATC
Statistics
Matches: 51, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 3 0.06
11 18 0.35
12 12 0.24
13 7 0.14
14 4 0.08
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (11 bp):
TAATATTAATT
Found at i:74225688 original size:24 final size:24
Alignment explanation
Indices: 74225660--74225729 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
74225650 TTTTAACAAG
74225660 ATTTAATATTAAATTTAATCTAAT
1 ATTTAATATTAAATTTAATCTAAT
* * *
74225684 ATTTAATATTAGATTAAATTTAAT
1 ATTTAATATTAAATTTAATCTAAT
* *
74225708 ATTAAAATGATTAAGTTTAATC
1 ATT-TAAT-ATTAAATTTAATC
74225730 ATAGTTGAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
24 24 0.67
25 3 0.08
26 9 0.25
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (24 bp):
ATTTAATATTAAATTTAATCTAAT
Found at i:74228990 original size:18 final size:18
Alignment explanation
Indices: 74228962--74228997 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
74228952 TAGAATGTTA
74228962 ATTTGGTATCGAT-TTTT
1 ATTTGGTATCGATATTTT
74228979 ATTTGAGTATCGATATTTT
1 ATTTG-GTATCGATATTTT
74228998 TTTATAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 8 0.47
19 4 0.24
ACGTcount: A:0.22, C:0.06, G:0.17, T:0.56
Consensus pattern (18 bp):
ATTTGGTATCGATATTTT
Found at i:74231032 original size:51 final size:51
Alignment explanation
Indices: 74230975--74231178 Score: 363
Period size: 51 Copynumber: 4.0 Consensus size: 51
74230965 CATTCACATA
74230975 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
1 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
74231026 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
1 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
* * *
74231077 ACAAAGTGACCTTCACATAGTACCACACTTGTGTCCAAAACTATTTTATTC
1 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
* *
74231128 ACAAAGTGGCCTTCACATAGTACCACGCTTGTGTCCAAAGCTATTTTATTC
1 ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
74231179 CTAAGATTCA
Statistics
Matches: 147, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.30
Consensus pattern (51 bp):
ACAAAGTGGCCTTCACATAGTACCACACTTGTGTCCAAAGCTATTATATTC
Found at i:74233100 original size:26 final size:26
Alignment explanation
Indices: 74233071--74233178 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
74233061 TGATACAAAT
74233071 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
74233097 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74233123 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
74233149 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
74233175 TGAT
1 TGAT
74233179 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:74243599 original size:22 final size:22
Alignment explanation
Indices: 74243574--74243618 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
74243564 AAGATAAAAC
*
74243574 ATTTAATTTTAAAAGATATTTT
1 ATTTAATTCTAAAAGATATTTT
* *
74243596 ATTTAATTCTAATATATATTTT
1 ATTTAATTCTAAAAGATATTTT
74243618 A
1 A
74243619 AAACTTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (22 bp):
ATTTAATTCTAAAAGATATTTT
Found at i:74244061 original size:17 final size:17
Alignment explanation
Indices: 74244039--74244072 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
74244029 ACTTTTAATT
74244039 TATATTATTCAAAATAA
1 TATATTATTCAAAATAA
74244056 TATATTATTCAAAATAA
1 TATATTATTCAAAATAA
74244073 AACACACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (17 bp):
TATATTATTCAAAATAA
Found at i:74250196 original size:46 final size:46
Alignment explanation
Indices: 74250138--74250230 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
74250128 CTGCAATAAC
74250138 ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
1 ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
74250184 ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
1 ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
74250230 A
1 A
74250231 AGAAACACTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.44, C:0.17, G:0.15, T:0.24
Consensus pattern (46 bp):
ATACATACAACGAGTCTATAGTCCATACAAGTATAGAAAACTATGG
Found at i:74254014 original size:24 final size:24
Alignment explanation
Indices: 74253957--74254029 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 24
74253947 GGCTACTCAT
* * *
74253957 CTGGAAGAAACAGTTATGTGAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
*
74253981 CTGGAAGAAGCAGTCATGTCAGCG
1 CTGGAAGAAGCAGTCATGTCAGCA
* * *
74254005 CTGGAAGAAGTAGCCATGGCAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
74254029 C
1 C
74254030 AATTACCCTT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.33, C:0.19, G:0.32, T:0.16
Consensus pattern (24 bp):
CTGGAAGAAGCAGTCATGTCAGCA
Found at i:74263461 original size:43 final size:43
Alignment explanation
Indices: 74263414--74263526 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 43
74263404 TATAACAGCA
*
74263414 TTAGCTGAGTAAATGGCACTAAGTGTGAGATACAATTATAGCT
1 TTAGCTAAGTAAATGGCACTAAGTGTGAGATACAATTATAGCT
* ** * *
74263457 TTAGCTAATTATTTGGCACTAAGTGTGCGATACAATTCTAGC-
1 TTAGCTAAGTAAATGGCACTAAGTGTGAGATACAATTATAGCT
* * * *
74263499 TTCGACTAATTAATTAGCACTAAGTGTG
1 TTAG-CTAAGTAAATGGCACTAAGTGTG
74263527 TGAGTTCGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
42 3 0.05
43 57 0.95
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (43 bp):
TTAGCTAAGTAAATGGCACTAAGTGTGAGATACAATTATAGCT
Found at i:74264493 original size:131 final size:135
Alignment explanation
Indices: 74264333--74264604 Score: 426
Period size: 139 Copynumber: 2.0 Consensus size: 135
74264323 ATGTTTATAG
* *
74264333 ATTTTTTGGAGATCTGCTCTGGTTAGAAGTCGAT-G-GA-G-ACACTATTCAGTTATCATTTCGG
1 ATTTTTTGGAGATCTGCTCTAGTTAGAAGTCGATGGAGATGCACACTATCCAGTTATCATTTCGG
* *
74264394 TAATTAATGTTTTGGGATTTGGTTATGTGGCATGTATAGGCTAGAAGTATATGAATATGTTTGGT
66 TAATTAATATTTTGGGATTTGGTTATATGGCATGTATAGGCTAGAAGTATATGAATATGTTTGGT
74264459 GATGT
131 GATGT
* *
74264464 ATTTTTTGGAGATCTGCTCTAGTTGGAAGTTGATGGAGATGTCATCACACTATCCAGTTATCATT
1 ATTTTTTGGAGATCTGCTCTAGTTAGAAGTCGATGGAGATG----CACACTATCCAGTTATCATT
74264529 TCGGTAATTAATATTTTGGGATTTGGTTATATGGCATGTATAGGCTAGAAGTATATGAATATGTT
62 TCGGTAATTAATATTTTGGGATTTGGTTATATGGCATGTATAGGCTAGAAGTATATGAATATGTT
74264594 TGGTGATGT
127 TGGTGATGT
74264603 AT
1 AT
74264605 ATATCTAGCC
Statistics
Matches: 127, Mismatches: 6, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
131 31 0.24
132 1 0.01
133 2 0.02
134 1 0.01
139 92 0.72
ACGTcount: A:0.25, C:0.09, G:0.25, T:0.40
Consensus pattern (135 bp):
ATTTTTTGGAGATCTGCTCTAGTTAGAAGTCGATGGAGATGCACACTATCCAGTTATCATTTCGG
TAATTAATATTTTGGGATTTGGTTATATGGCATGTATAGGCTAGAAGTATATGAATATGTTTGGT
GATGT
Found at i:74266449 original size:23 final size:23
Alignment explanation
Indices: 74266420--74266503 Score: 114
Period size: 23 Copynumber: 3.7 Consensus size: 23
74266410 GAAATTAATT
* *
74266420 CCACACGGGTGTGTGCCCTATAC
1 CCACACGGGCGTGTGCCCTATTC
*
74266443 ACACACGGGCGTGTGCCCTATTC
1 CCACACGGGCGTGTGCCCTATTC
* * *
74266466 CCACACAGGTGTGTGCCTTATTC
1 CCACACGGGCGTGTGCCCTATTC
74266489 CCACACGGGCGTGTG
1 CCACACGGGCGTGTG
74266504 GAGTCTTAAA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 52 1.00
ACGTcount: A:0.17, C:0.33, G:0.27, T:0.23
Consensus pattern (23 bp):
CCACACGGGCGTGTGCCCTATTC
Found at i:74275481 original size:17 final size:17
Alignment explanation
Indices: 74275455--74275488 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
74275445 TAATTTACCC
*
74275455 TTCAATTTACATGCTTT
1 TTCAACTTACATGCTTT
74275472 TTCAACTTACATGCTTT
1 TTCAACTTACATGCTTT
74275489 AATCGTCCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.21, G:0.06, T:0.50
Consensus pattern (17 bp):
TTCAACTTACATGCTTT
Found at i:74278401 original size:31 final size:31
Alignment explanation
Indices: 74278353--74278428 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
74278343 TGCCCCAAGA
*
74278353 TACATGGGCGTGTGAGTCCACACGGCCCACG
1 TACATGGGCGTGTGAGTCCACACGGCCCACC
* * *
74278384 TACACGGGCATGTGAGTCCACACGGCCTACC
1 TACATGGGCGTGTGAGTCCACACGGCCCACC
74278415 TACATGGGCGTGTG
1 TACATGGGCGTGTG
74278429 TCCCCTTATG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.20, C:0.30, G:0.32, T:0.18
Consensus pattern (31 bp):
TACATGGGCGTGTGAGTCCACACGGCCCACC
Found at i:74293893 original size:25 final size:25
Alignment explanation
Indices: 74293859--74293927 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 25
74293849 GGAAGTGCTA
*
74293859 AAAGGGCTCTGCCCCAGTTTACCAT
1 AAAGGGCTCTGCCCCAGTTTACCAG
* * *
74293884 AAAGGACTCTACCCCAGTTTATCAG
1 AAAGGGCTCTGCCCCAGTTTACCAG
*
74293909 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTCTGCCCCAGTT
74293928 ATTAAAAGAG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (25 bp):
AAAGGGCTCTGCCCCAGTTTACCAG
Found at i:74293940 original size:24 final size:24
Alignment explanation
Indices: 74293895--74293954 Score: 59
Period size: 25 Copynumber: 2.4 Consensus size: 24
74293885 AAGGACTCTA
**
74293895 CCCCAGTTTATCAGAAAGGGCTTTG
1 CCCCAG-TTATCAGAAAGGGCTAGG
*
74293920 CCCCAGTTATTA-AAAGAGGCTAGG
1 CCCCAGTTATCAGAAAG-GGCTAGG
74293944 CCTCCAGTTAT
1 CC-CCAGTTAT
74293955 ATGATAAAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 4 0.13
24 12 0.40
25 14 0.47
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (24 bp):
CCCCAGTTATCAGAAAGGGCTAGG
Found at i:74294201 original size:31 final size:31
Alignment explanation
Indices: 74294147--74294223 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
74294137 CGCTTACAGT
*
74294147 AAAGGCCTCGG-CCAGCGATATGATTTATGA
1 AAAGGCTTCGGCCCAGCGATATGATTTATGA
*
74294177 AAAGGCTTCGGCCCAGGGATATGATTTATGA
1 AAAGGCTTCGGCCCAGCGATATGATTTATGA
*
74294208 AAAGGCTTCAGCCCAG
1 AAAGGCTTCGGCCCAG
74294224 TATATGTCAA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
30 10 0.23
31 33 0.77
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGCGATATGATTTATGA
Found at i:74296421 original size:27 final size:27
Alignment explanation
Indices: 74296391--74296451 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
74296381 CGACTTGTAA
*
74296391 AATTACCAAAGTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
**** *
74296418 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
74296445 AATTACC
1 AATTACC
74296452 GTTTTACCCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:74296449 original size:54 final size:53
Alignment explanation
Indices: 74296375--74296504 Score: 129
Period size: 54 Copynumber: 2.4 Consensus size: 53
74296365 ATTATTGAAA
*
74296375 TACCCTCGACTTGTAA-AATTACCAAAGTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGA-TT-TAAGAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTT
**** * * *
74296429 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTA-AGAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTT
74296483 TACCCGT-GATTTATAGAATTAC
1 TACCC-TCGATTTA-AGAATTAC
74296505 TATTTTACCC
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
52 2 0.03
53 3 0.05
54 58 0.91
55 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (53 bp):
TACCCTCGATTTAAGAATTACCAAAGTACCCCCGATTTACAGAATTACCGTTT
Found at i:74296452 original size:27 final size:27
Alignment explanation
Indices: 74296402--74296546 Score: 161
Period size: 27 Copynumber: 5.4 Consensus size: 27
74296392 ATTACCAAAG
* *
74296402 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
74296429 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
74296456 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* **
74296483 TACCCGT-GATTTATAGAATTACTATTT
1 TACCC-TCGATTTACAGAATTACCGTTT
* * *
74296510 TACCCTTGATTGT-GA-AATTACCATTT
1 TACCCTCGATT-TACAGAATTACCGTTT
74296536 TACCCTCGATT
1 TACCCTCGATT
74296547 GTGAAATTAC
Statistics
Matches: 107, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
26 21 0.20
27 84 0.79
28 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:74296608 original size:27 final size:27
Alignment explanation
Indices: 74296578--74296715 Score: 118
Period size: 27 Copynumber: 5.1 Consensus size: 27
74296568 TATAGGGTAG
*
74296578 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* * *
74296605 AATTACCAAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
** * *
74296632 AATTACTGAAATA-TCCTCAATTCGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
* **
74296659 AATTACTAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
* *
74296686 AATTA-CAGAAATACCCTTAACTTTCTAA
1 AATTACCA-AAATACCCCTAA-TTTGTAA
74296714 AA
1 AA
74296716 ATTATAGAAA
Statistics
Matches: 89, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
26 3 0.03
27 76 0.85
28 10 0.11
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:74296639 original size:81 final size:81
Alignment explanation
Indices: 74296545--74296700 Score: 208
Period size: 81 Copynumber: 1.9 Consensus size: 81
74296535 TTACCCTCGA
* * * * **
74296545 TTGTGAAATTACTGAAATA-CCTCTATAGGGTAGAATTACCAAAATACCCCTAGTTTGTAAAATT
1 TTGTGAAATTACTGAAATATCCTCAAT-GCGTAAAATTACCAAAATACCCCTAATTTACAAAATT
74296609 ACCA-AAATACCACTAGT
65 A-CAGAAATACCACTAGT
* *
74296626 TTGTGAAATTACTGAAATATCCTCAATTCGTAAAATTACTAAAATACCCCTAATTTACAAAATTA
1 TTGTGAAATTACTGAAATATCCTCAATGCGTAAAATTACCAAAATACCCCTAATTTACAAAATTA
74296691 CAGAAATACC
66 CAGAAATACC
74296701 CTTAACTTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
80 2 0.03
81 57 0.88
82 6 0.09
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.30
Consensus pattern (81 bp):
TTGTGAAATTACTGAAATATCCTCAATGCGTAAAATTACCAAAATACCCCTAATTTACAAAATTA
CAGAAATACCACTAGT
Found at i:74296689 original size:54 final size:55
Alignment explanation
Indices: 74296601--74296758 Score: 178
Period size: 54 Copynumber: 2.9 Consensus size: 55
74296591 CCCCTAGTTT
* *** *
74296601 GTAAAATTACCAAAATACCACTAGTTTGTGAAATTACTGAAATATCCTCAA-TTC
1 GTAAAATTACTAAAATACCACTAGTTTACAAAATTACTGAAATACCCTCAACTTC
* * * *
74296655 GTAAAATTACTAAAATACCCCTAATTTACAAAATTACAGAAATACCCTTAACTTTC
1 GTAAAATTACTAAAATACCACTAGTTTACAAAATTACTGAAATACCCTCAAC-TTC
*
74296711 -TAAAAATTA-TAGAAATACCATTAGTTTACAAAATTACTGAAATACCCT
1 GT-AAAATTACTA-AAATACCACTAGTTTACAAAATTACTGAAATACCCT
74296759 TGGTTTGTAG
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
54 42 0.48
55 3 0.03
56 42 0.48
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.31
Consensus pattern (55 bp):
GTAAAATTACTAAAATACCACTAGTTTACAAAATTACTGAAATACCCTCAACTTC
Found at i:74296752 original size:27 final size:27
Alignment explanation
Indices: 74296631--74296759 Score: 118
Period size: 27 Copynumber: 4.7 Consensus size: 27
74296621 CTAGTTTGTG
* * ***
74296631 AAATTACTGAAATATCCTCAATTCGTA
1 AAATTACTGAAATACCCTTAATTTACA
* *
74296658 AAATTACTAAAATACCCCTAATTTACA
1 AAATTACTGAAATACCCTTAATTTACA
*
74296685 AAATTACAGAAATACCCTTAACTTT-CTAA
1 AAATTACTGAAATACCCTTAA-TTTAC--A
* *
74296714 AAATTA-TAGAAATACCATTAGTTTACA
1 AAATTACT-GAAATACCCTTAATTTACA
74296741 AAATTACTGAAATACCCTT
1 AAATTACTGAAATACCCTT
74296760 GGTTTGTAGA
Statistics
Matches: 82, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
27 56 0.68
28 7 0.09
29 19 0.23
ACGTcount: A:0.45, C:0.19, G:0.05, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTTAATTTACA
Found at i:74296764 original size:27 final size:27
Alignment explanation
Indices: 74296586--74296764 Score: 103
Period size: 27 Copynumber: 6.6 Consensus size: 27
74296576 AGAATTACCA
* ** **
74296586 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCTTAGTTTACAAAATTACTG
***
74296613 AAATACCAC-TAGTTTGTGAAATTACTG
1 AAATACC-CTTAGTTTACAAAATTACTG
* * * *** *
74296640 AAATATCCTCAATTCGTAAAATTACTA
1 AAATACCCTTAGTTTACAAAATTACTG
* * *
74296667 AAATACCCCTAATTTACAAAATTACAG
1 AAATACCCTTAGTTTACAAAATTACTG
*
74296694 AAATACCCTTAACTTT-CTAAAAATTA-TAG
1 AAATACCCTT-AGTTTAC--AAAATTACT-G
*
74296723 AAATACCATTAGTTTACAAAATTACTG
1 AAATACCCTTAGTTTACAAAATTACTG
*
74296750 AAATACCCTTGGTTT
1 AAATACCCTTAGTTT
74296765 GTAGATTTAC
Statistics
Matches: 120, Mismatches: 24, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
26 1 0.01
27 91 0.76
28 10 0.08
29 18 0.15
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.32
Consensus pattern (27 bp):
AAATACCCTTAGTTTACAAAATTACTG
Found at i:74297728 original size:25 final size:24
Alignment explanation
Indices: 74297694--74297762 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 24
74297684 GGAAGTGCTA
*
74297694 AAAGGGCTCTGCCCTAGTTTACCAT
1 AAAGGGCTCTGCCC-AGTTTACCAG
* *
74297719 AAAGGACTCTGCGCCAGTTTATCAG
1 AAAGGGCTCTGC-CCAGTTTACCAG
*
74297744 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTCTG-CCCAGTT
74297763 ATTAAAAAAG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 34 0.92
26 3 0.08
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAGGGCTCTGCCCAGTTTACCAG
Found at i:74298031 original size:31 final size:31
Alignment explanation
Indices: 74297989--74298064 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
74297979 AGTAAAGGAT
74297989 TCGA-CCAGTGATATGATTTATGAAAAGGCC
1 TCGACCCAGTGATATGATTTATGAAAAGGCC
* *
74298019 TCGACCCAGTGATATAATTTATGAAAAGGCT
1 TCGACCCAGTGATATGATTTATGAAAAGGCC
*
74298050 TCGGCCCAGT-ATATG
1 TCGACCCAGTGATATG
74298065 TCGAGACTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 8 0.20
31 33 0.80
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (31 bp):
TCGACCCAGTGATATGATTTATGAAAAGGCC
Found at i:74298112 original size:29 final size:28
Alignment explanation
Indices: 74298078--74298132 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
74298068 AGACTGAATT
* *
74298078 AGGGCTTAGGCCCATACTGCTACTGTTTA
1 AGGGCTAAGGCCCAGACTG-TACTGTTTA
74298107 AGGGCTAAGGCCCAGACTGTACTGTT
1 AGGGCTAAGGCCCAGACTGTACTGTT
74298133 ACTGAATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (28 bp):
AGGGCTAAGGCCCAGACTGTACTGTTTA
Found at i:74298152 original size:33 final size:33
Alignment explanation
Indices: 74298070--74298160 Score: 93
Period size: 33 Copynumber: 2.8 Consensus size: 33
74298060 ATATGTCGAG
*
74298070 ACTGAATTAGGGCTTAGGCCCATACTGCTACTGTT
1 ACTGAA-TAGGGCTTAGGCCCAGACTG-TACTGTT
*
74298105 --T--A-AGGGCTAAGGCCCAGACTGTACTGTT
1 ACTGAATAGGGCTTAGGCCCAGACTGTACTGTT
* *
74298133 ACTGAATAGGGCTTTGGCCCAGATTGTA
1 ACTGAATAGGGCTTAGGCCCAGACTGTA
74298161 TTGACACTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
28 7 0.15
29 17 0.37
30 1 0.02
31 1 0.02
32 1 0.02
33 19 0.41
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (33 bp):
ACTGAATAGGGCTTAGGCCCAGACTGTACTGTT
Found at i:74300252 original size:27 final size:27
Alignment explanation
Indices: 74300222--74300282 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
74300212 CGACTTGTAA
*
74300222 AATTACCAAAGTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
**** *
74300249 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCCCGATTTACAG
74300276 AATTACC
1 AATTACC
74300283 GTTTTACCCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:74300283 original size:27 final size:27
Alignment explanation
Indices: 74300233--74300377 Score: 177
Period size: 27 Copynumber: 5.4 Consensus size: 27
74300223 ATTACCAAAG
* *
74300233 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
74300260 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
74300287 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
74300314 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
74300341 TACCGTCGATTGT-GA-AATTACCGTTT
1 TACCCTCGATT-TACAGAATTACCGTTT
74300367 TACCCTCGATT
1 TACCCTCGATT
74300378 GTGAAATTTC
Statistics
Matches: 103, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
26 19 0.18
27 83 0.81
28 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:74300342 original size:54 final size:54
Alignment explanation
Indices: 74300206--74300377 Score: 177
Period size: 54 Copynumber: 3.2 Consensus size: 54
74300196 ATTATTGAAA
* ** *** * * *
74300206 TACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
* * *
74300260 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
* * * *
74300314 TACCCTTGATTTACAAAATTACTATTTTACCGTCGA-TTGT-GAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAG-AATTACCGTTT
74300367 TACCCTCGATT
1 TACCCTCGATT
74300378 GTGAAATTTC
Statistics
Matches: 97, Mismatches: 20, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
52 1 0.01
53 23 0.24
54 73 0.75
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
Done.