Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 227 of 325
Found at i:74300512 original size:27 final size:27
Alignment explanation
Indices: 74300409--74300610 Score: 115
Period size: 27 Copynumber: 7.4 Consensus size: 27
74300399 TATAGGGTAG
* *
74300409 AATTACAAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
74300436 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTGATTTGTAA
* * **
74300463 AATTACCGAAATATCCTCAATTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
**
74300490 AATTACCAAAATACCCTTGATTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
74300517 AATTA-TAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCTTGA-TTTGT-AA
* * * **
74300546 AATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTTGATTTGTAA
*** * *
74300573 AATTAATGAAATACCCTTGGTTTGTAT
1 AATTACCAAAATACCCTTGATTTGTAA
*
74300600 ATTTACCAAAA
1 AATTACCAAAA
74300611 CACCATTGTA
Statistics
Matches: 137, Mismatches: 31, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
26 2 0.01
27 107 0.78
28 8 0.06
29 20 0.15
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.33
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:74300555 original size:29 final size:27
Alignment explanation
Indices: 74300498--74300591 Score: 120
Period size: 27 Copynumber: 3.4 Consensus size: 27
74300488 AAAATTACCA
74300498 AAATACCCTTGATTTACAAAATTATAG
1 AAATACCCTTGATTTACAAAATTATAG
74300525 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCTTGA-TTTAC--AAAATTATAG
* *
74300554 AAATACCATTGGTTTACAAAATTA-ATG
1 AAATACCCTTGATTTACAAAATTATA-G
74300581 AAATACCCTTG
1 AAATACCCTTG
74300592 GTTTGTATAT
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
26 1 0.02
27 31 0.53
28 6 0.10
29 21 0.36
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATACCCTTGATTTACAAAATTATAG
Found at i:74300713 original size:27 final size:27
Alignment explanation
Indices: 74300649--74300713 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
74300639 ACCCCTAAGA
*
74300649 GGTAAAAAGACCGTAAAGCCACTGTAG
1 GGTAAAATGACCGTAAAGCCACTGTAG
* * *
74300676 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCACTGTAG
74300703 GGTAAAATGAC
1 GGTAAAATGAC
74300714 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCACTGTAG
Found at i:74301559 original size:25 final size:25
Alignment explanation
Indices: 74301531--74301590 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
74301521 GCTAAAATGA
* *
74301531 CTCTGCCCTAGTTTACCGAAAAGGG
1 CTCTGCCCCAGTTTACCAAAAAGGG
* *
74301556 CTCTACCCCAGTTTATCAAAAAGGG
1 CTCTGCCCCAGTTTACCAAAAAGGG
*
74301581 CTTTGCCCCA
1 CTCTGCCCCA
74301591 ATTATTAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (25 bp):
CTCTGCCCCAGTTTACCAAAAAGGG
Found at i:74301595 original size:24 final size:25
Alignment explanation
Indices: 74301549--74301600 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
74301539 TAGTTTACCG
*
74301549 AAAAGGGCTCTACCCCAGTTTATCA
1 AAAAGGGCTCTACCCCAGATTATCA
* * *
74301574 AAAAGGGCTTTGCCCCA-ATTATTA
1 AAAAGGGCTCTACCCCAGATTATCA
74301598 AAA
1 AAA
74301601 GAGGCTAGGC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTCTACCCCAGATTATCA
Found at i:74301864 original size:31 final size:31
Alignment explanation
Indices: 74301813--74301895 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
74301803 CGCTTGCAGT
*
74301813 AAAGGCTTCGG-CTAGTGATATGATTCATGA
1 AAAGGCTTCGGCCCAGTGATATGATTCATGA
*
74301843 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTCATGA
74301874 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
74301896 TCGAGACTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
30 16 0.32
31 34 0.68
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTCATGA
Found at i:74311787 original size:48 final size:48
Alignment explanation
Indices: 74311681--74312038 Score: 351
Period size: 48 Copynumber: 7.4 Consensus size: 48
74311671 CATGTCCCGG
* * * * *
74311681 ACATGGTCTTACACTGGCTCTCATACATCGATGTCGATGCCATGTCCCAG
1 ACATGGTCTTACACTAGCTCTCATA-A-CAATGCCGATGCCATGTTCCAA
* * * * *
74311731 ACACGGTCTTACATTGGCTCACATAACAATGCCGATGCCATGTTCTAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
* * *** * * *
74311779 ATATGGTCTTACACTGGCT-TGCATATTGAGGCCGATGCCATG-TCTTAG
1 ACATGGTCTTACACTAGCTCT-CATAACAATGCCGATGCCATGTTC-CAA
* *
74311827 ACATAGTCTTACACTAGCTCTCATAACAATGCCGATGTCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
* * ** *** * ** * *
74311875 ATATGGTCTTACACTGGCTAGCATATTGAGGCCGATGTTATGTCCCAG
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
* *
74311923 ACATAGTCTTACAGTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
*
74311971 ACATGGTTTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
1 ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
74312019 ACATGGTCTTACACTAGCTC
1 ACATGGTCTTACACTAGCTC
74312039 ACACATAACC
Statistics
Matches: 247, Mismatches: 57, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
47 2 0.01
48 219 0.89
49 4 0.02
50 22 0.09
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAA
Found at i:74311852 original size:96 final size:96
Alignment explanation
Indices: 74311683--74312038 Score: 435
Period size: 96 Copynumber: 3.7 Consensus size: 96
74311673 TGTCCCGGAC
* * ** * *
74311683 ATGGTCTTACACTGGCTCTCATACATCGATGTCGATGCCATGTCCCAGACACGGTCTTACATTGG
1 ATGGTCTTACACTGGCTCTCAT--ATCGAGGCCGATGCCATGTCCCAGACATAGTCTTACACTAG
* *
74311748 CTCACATAACAATGCCGATGCCATGTTCTAAAT
64 CTCTCATAACAATGCCGATGCCATGTTCCAAAT
* **
74311781 ATGGTCTTACACTGGCT-TGCATATTGAGGCCGATGCCATGTCTTAGACATAGTCTTACACTAGC
1 ATGGTCTTACACTGGCTCT-CATATCGAGGCCGATGCCATGTCCCAGACATAGTCTTACACTAGC
*
74311845 TCTCATAACAATGCCGATGTCATGTTCCAAAT
65 TCTCATAACAATGCCGATGCCATGTTCCAAAT
** * ** *
74311877 ATGGTCTTACACTGGCTAGCATATTGAGGCCGATGTTATGTCCCAGACATAGTCTTACAGTAGCT
1 ATGGTCTTACACTGGCTCTCATATCGAGGCCGATGCCATGTCCCAGACATAGTCTTACACTAGCT
*
74311942 CTCATAACAATGCCGATGCCATGTTCCAAAC
66 CTCATAACAATGCCGATGCCATGTTCCAAAT
* * * * * * * *
74311973 ATGGTTTTACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAACATGGTCTTACACTAGCT
1 ATGGTCTTACACTGGCTCTCATATCGAGGCCGATGCCATGTCCCAGACATAGTCTTACACTAGCT
74312038 C
66 C
74312039 ACACATAACC
Statistics
Matches: 222, Mismatches: 34, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
96 201 0.91
97 1 0.00
98 20 0.09
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (96 bp):
ATGGTCTTACACTGGCTCTCATATCGAGGCCGATGCCATGTCCCAGACATAGTCTTACACTAGCT
CTCATAACAATGCCGATGCCATGTTCCAAAT
Found at i:74313254 original size:24 final size:24
Alignment explanation
Indices: 74313227--74313274 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
74313217 ACCAAACAAA
74313227 TATCTTCCACTAACCTATTAATAG
1 TATCTTCCACTAACCTATTAATAG
74313251 TATCTTCCACTAACCTATTAATAG
1 TATCTTCCACTAACCTATTAATAG
74313275 GTTAACTTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.38
Consensus pattern (24 bp):
TATCTTCCACTAACCTATTAATAG
Found at i:74314673 original size:20 final size:21
Alignment explanation
Indices: 74314648--74314687 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74314638 CCTTAGAAAC
*
74314648 AGGGC-ACACGTCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
74314668 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
74314688 CCATTAGGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:74326575 original size:28 final size:28
Alignment explanation
Indices: 74326503--74326581 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
74326493 GGGGTTCACT
* * *
74326503 TATAAGGAGTTCACATTTTGGGGTTTGCT
1 TATAAGG-GTTCACATATAGGGGTTTGCA
**
74326532 TATAAGGGTTGGCATATAGGGGATTT-CA
1 TATAAGGGTTCACATATAGGGG-TTTGCA
*
74326560 TATAAGGGTTCACATACAGGGG
1 TATAAGGGTTCACATATAGGGG
74326582 GTTTTCATGC
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
28 31 0.76
29 10 0.24
ACGTcount: A:0.27, C:0.10, G:0.30, T:0.33
Consensus pattern (28 bp):
TATAAGGGTTCACATATAGGGGTTTGCA
Found at i:74330234 original size:38 final size:38
Alignment explanation
Indices: 74330182--74330510 Score: 244
Period size: 38 Copynumber: 7.9 Consensus size: 38
74330172 ATTGATTCAT
74330182 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
* *
74330220 TAACGTGGTACTAAGTGGATATACCACGGTTAAACGTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
* * *
74330258 TAACATGGTGCTAAGTGGATATACCACGATTACACATATTGATACATG
1 TAACGTGGTGCTAAGTGGATATACCACG---------GTT-ATACGTG
* * * *
74330306 TAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGG-T---TATA-CG--T--G
* *
74330353 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
* * *
74330391 TAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCG
1 TAACGTGGTGCTAAGTGGATATACCACGG-T---TATA-CG--T-G
* * *
74330437 TTAACGCGGTGCTAAGTGGATATACCACGGTTAAACATG
1 -TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
*
74330476 TAACGTGGTGCTAAGTGGATATGCCACGGTTATAC
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATAC
74330511 ATGTTAATTT
Statistics
Matches: 231, Mismatches: 32, Indels: 56
0.72 0.10 0.18
Matches are distributed among these distances:
38 121 0.52
39 2 0.01
40 3 0.01
42 6 0.03
43 7 0.03
45 2 0.01
46 3 0.01
47 55 0.24
48 32 0.14
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
Found at i:74330357 original size:133 final size:132
Alignment explanation
Indices: 74330220--74330469 Score: 383
Period size: 133 Copynumber: 1.9 Consensus size: 132
74330210 GTTATACGTG
*
74330220 TAACGTGGTACTAAGTGGATATACCACGGTTAAACGTGTAACATGGTGCTAAGTGGATATACCAC
1 TAACGTGGTACTAAGTGGATATACCACGGTTAAACATGTAACATGGTGCTAAGTGGATATACCAC
* *
74330285 GATTACACATATTGATACATGTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATT
66 GATTACACATATTGATACAT-TAACACGGTGCTAAGTGGATATACCACGGTTACATATATTGATT
74330350 CAT
130 CAT
* * * *
74330353 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCAT
1 TAACGTGGTACTAAGTGGATATACCACGGTTAAACATGTAACATGGTGCTAAGTGGATATACCAC
* * * * *
74330418 GGTTACATATATTGATTCGTTAACGCGGTGCTAAGTGGATATACCACGGTTA
66 GATTACACATATTGATACATTAACACGGTGCTAAGTGGATATACCACGGTTA
74330470 AACATGTAAC
Statistics
Matches: 105, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
132 29 0.28
133 76 0.72
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (132 bp):
TAACGTGGTACTAAGTGGATATACCACGGTTAAACATGTAACATGGTGCTAAGTGGATATACCAC
GATTACACATATTGATACATTAACACGGTGCTAAGTGGATATACCACGGTTACATATATTGATTC
AT
Found at i:74330367 original size:171 final size:171
Alignment explanation
Indices: 74330082--74330422 Score: 601
Period size: 171 Copynumber: 2.0 Consensus size: 171
74330072 AAAAATGTGT
* * * *
74330082 ACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACGTATTGATACATGTAACGTGGTGCT
1 ACGTGTAACATGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACATGGTGCT
74330147 AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGT
66 AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGT
* *
74330212 TATACGTGTAACGTGGTACTAAGTGGATATACCACGGTTAA
131 TAAACATGTAACGTGGTACTAAGTGGATATACCACGGTTAA
74330253 ACGTGTAACATGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACATGGTGCT
1 ACGTGTAACATGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACATGGTGCT
74330318 AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGT
66 AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGT
* * *
74330383 TAAACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTA
131 TAAACATGTAACGTGGTACTAAGTGGATATACCACGGTTA
74330423 CATATATTGA
Statistics
Matches: 161, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
171 161 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (171 bp):
ACGTGTAACATGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACATGGTGCT
AAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTAAGTGGATATACCACGGT
TAAACATGTAACGTGGTACTAAGTGGATATACCACGGTTAA
Found at i:74330407 original size:85 final size:85
Alignment explanation
Indices: 74330130--74330507 Score: 495
Period size: 85 Copynumber: 4.4 Consensus size: 85
74330120 ACGTATTGAT
74330130 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
74330195 AGTGGATATACCACGGTTAT
66 AGTGGATATACCACGGTTAA
* * * * * *
74330215 ACGTGTAACGTGGTACTAAGTGGATATACCACGGTT--A-A-A-CG--T--GTAACATGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
*
74330271 AGTGGATATACCACGATTACACATATTGA
66 AGTGGATATACCACG-GT-----TA---A
*
74330300 TACATGTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCT
1 -ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCT
74330365 AAGTGGATATACCACGGTTAA
65 AAGTGGATATACCACGGTTAA
* * *
74330386 ACATGTAACGTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTCGTTAACGCGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
74330451 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
74330471 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
74330508 TACATGTTAA
Statistics
Matches: 253, Mismatches: 21, Indels: 38
0.81 0.07 0.12
Matches are distributed among these distances:
76 27 0.11
77 1 0.00
78 1 0.00
80 1 0.00
81 1 0.00
82 3 0.01
83 1 0.00
85 150 0.59
86 33 0.13
88 1 0.00
89 3 0.01
90 1 0.00
91 1 0.00
93 1 0.00
94 1 0.00
95 27 0.11
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACGTGGTGCTA
AGTGGATATACCACGGTTAA
Found at i:74333360 original size:42 final size:42
Alignment explanation
Indices: 74333288--74333494 Score: 157
Period size: 42 Copynumber: 4.8 Consensus size: 42
74333278 CATGTCCCTA
* * * *
74333288 ACATGGTCTTATATG-GGTCTCCATACCGATGCCATATCTCAG
1 ACATGGTCTTATACGAAGTCT-CATATCGATGCCATATCCCAG
* * *
74333330 ATATGGTCTTATACGAAGTCTCATGTCGATGCTGATGCCATGTCCCAA
1 ACATGGTCTTATACGAAGTCTCA--T--AT-C-GATGCCATATCCCAG
* * *
74333378 ACATGGTCTTATACG-GGACCTCATATCGATGCCATGTCCCAG
1 ACATGGTCTTATACGAAG-TCTCATATCGATGCCATATCCCAG
* * * *
74333420 ACATGATCTTACACGAAATCTCATATCAATGCCATATCCCAG
1 ACATGGTCTTATACGAAGTCTCATATCGATGCCATATCCCAG
* * * * *
74333462 ATATGGTCTTACATGAAATCACATATCGATGCC
1 ACATGGTCTTATACGAAGTCTCATATCGATGCC
74333495 GATGCCATAT
Statistics
Matches: 133, Mismatches: 23, Indels: 18
0.76 0.13 0.10
Matches are distributed among these distances:
42 91 0.68
43 5 0.04
44 3 0.02
46 2 0.02
47 2 0.02
48 30 0.23
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (42 bp):
ACATGGTCTTATACGAAGTCTCATATCGATGCCATATCCCAG
Found at i:74333367 original size:48 final size:42
Alignment explanation
Indices: 74333309--74333523 Score: 169
Period size: 42 Copynumber: 4.8 Consensus size: 42
74333299 TATGGGTCTC
* * * *
74333309 CATACCGATGCCATATCTCAGATATGGTCTTATACGAAGTCT
1 CATATCGATGCCATATCCCAGATATGGTCTTACACGAAATCT
* * * * ** *
74333351 CATGTCGATGCTGATGCCATGTCCCAAACATGGTCTTATACGGGACCT
1 CA--T--AT-C-GATGCCATATCCCAGATATGGTCTTACACGAAATCT
* * *
74333399 CATATCGATGCCATGTCCCAGACATGATCTTACACGAAATCT
1 CATATCGATGCCATATCCCAGATATGGTCTTACACGAAATCT
* * *
74333441 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAATCA
1 CATATCGATGCCATATCCCAGATATGGTCTTACACGAAATCT
74333483 CATATCGATGCCGATGCCATATCCCAGATATGGTCTTACAC
1 C--AT--AT--CGATGCCATATCCCAGATATGGTCTTACAC
74333524 TGGCACACAT
Statistics
Matches: 138, Mismatches: 23, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
42 69 0.50
43 1 0.01
44 5 0.04
46 4 0.03
47 1 0.01
48 58 0.42
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (42 bp):
CATATCGATGCCATATCCCAGATATGGTCTTACACGAAATCT
Found at i:74333430 original size:90 final size:90
Alignment explanation
Indices: 74333276--74333443 Score: 230
Period size: 90 Copynumber: 1.9 Consensus size: 90
74333266 AAATGCCAAA
* * * * * *
74333276 GCCATGTCCCTAACATGGTCTTATATGGGTCTCCATACCGATGCCATATCTCAGATATGGTCTTA
1 GCCATGTCCCAAACATGGTCTTATACGGGCCTCCATACCGATGCCATATCCCAGACATGATCTTA
* *
74333341 TACGAAGTCTCATGTCGATGCTGAT
66 CACGAAATCTCATGTCGATGCTGAT
* *
74333366 GCCATGTCCCAAACATGGTCTTATACGGGACCT-CATATCGATGCCATGTCCCAGACATGATCTT
1 GCCATGTCCCAAACATGGTCTTATACGGG-CCTCCATACCGATGCCATATCCCAGACATGATCTT
74333430 ACACGAAATCTCAT
65 ACACGAAATCTCAT
74333444 ATCAATGCCA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 65 0.97
91 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (90 bp):
GCCATGTCCCAAACATGGTCTTATACGGGCCTCCATACCGATGCCATATCCCAGACATGATCTTA
CACGAAATCTCATGTCGATGCTGAT
Found at i:74333533 original size:48 final size:48
Alignment explanation
Indices: 74333448--74333667 Score: 194
Period size: 48 Copynumber: 4.6 Consensus size: 48
74333438 TCTCATATCA
* ** * *
74333448 ATGCCATATCCCAGATATGGTCTTACA-TGAAATCACATATCGATGCCG
1 ATGCCATGTCCCAGATATGGTCTTACACTGGCA-CACATATCAACGCCG
*
74333496 ATGCCATATCCCAGATATGGTCTTACACTGGCACACATATCAACGCCG
1 ATGCCATGTCCCAGATATGGTCTTACACTGGCACACATATCAACGCCG
** * * * ***
74333544 ACT-CTTTGTCCCAAACATGGTCCTACACTGGC-CACATATCAACATTG
1 A-TGCCATGTCCCAGATATGGTCTTACACTGGCACACATATCAACGCCG
* * * * ** *
74333591 ATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCATCTTGGATGCCG
1 ATGCCATGTCCCAGATATGGTCTTACACTGGCACACAT-ATCAACGCCG
*
74333640 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGATATGGTCTTACAC
74333668 GGGATCTCAT
Statistics
Matches: 139, Mismatches: 28, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
46 1 0.01
47 36 0.26
48 68 0.49
49 34 0.24
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (48 bp):
ATGCCATGTCCCAGATATGGTCTTACACTGGCACACATATCAACGCCG
Found at i:74343110 original size:40 final size:41
Alignment explanation
Indices: 74343048--74343303 Score: 321
Period size: 40 Copynumber: 6.4 Consensus size: 41
74343038 AAACCAAGTA
* * *
74343048 CCTTCGGGATTTA-ACCGGATA-TAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATTAG-TAACTCGCACAAATG
**
74343087 CCTTCGGGACTTAGCCCGGATA-TAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
*
74343127 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
* * *
74343167 CCTTTGGGACTTAGCCC-GAAATTAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
* *
74343207 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
* *
74343247 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
*
74343287 CCTTCAGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
74343304 CGTTATCATC
Statistics
Matches: 198, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.08
40 180 0.91
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
Found at i:74346297 original size:30 final size:30
Alignment explanation
Indices: 74346261--74346321 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
74346251 TTCCCGAGCG
74346261 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
74346291 TAGGGGCAAAATTGTAAATTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
74346321 T
1 T
74346322 GAGTTAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:74347101 original size:68 final size:63
Alignment explanation
Indices: 74346982--74347131 Score: 158
Period size: 68 Copynumber: 2.3 Consensus size: 63
74346972 ATACAGATAG
* * * * *
74346982 TATGTAGCTAGGTCACATGTATGGTGCTAGTGCACATCATGTGTACAAGAGAGCTACAAGACATT
1 TATGTAGCTAGGTCGCATGGATGATACTAGTGCACACCATGTGTACAAGAGAGCTAC--GACA-T
74347047 A
63 A
* * **
74347048 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTACGGGAT
1 T-ATGTAGCTAGGTCGCATGGATGATACTA-GTGCACACCATGT-GTACAAGAGAGCTACGACAT
74347112 A
63 A
74347113 TATGTAGCTAGGTCGCATG
1 TATGTAGCTAGGTCGCATG
74347132 TGTGTTAAGT
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
64 18 0.25
65 3 0.04
66 3 0.04
67 23 0.32
68 24 0.33
69 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (63 bp):
TATGTAGCTAGGTCGCATGGATGATACTAGTGCACACCATGTGTACAAGAGAGCTACGACATA
Found at i:74355711 original size:43 final size:42
Alignment explanation
Indices: 74355663--74355765 Score: 163
Period size: 43 Copynumber: 2.4 Consensus size: 42
74355653 TTCAACGAAC
*
74355663 TCGCACACTTAGTGCCAATTAATT-CTTCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAAATAATTAC-T-GAAGCTATAATTGTA
74355706 TCGCACACTTAGTGCCAAATAATTAGCTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAAATAATTA-CTGAAGCTATAATTGTA
74355749 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
74355766 TTACATTAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
43 55 0.96
44 1 0.02
45 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (42 bp):
TCGCACACTTAGTGCCAAATAATTACTGAAGCTATAATTGTA
Found at i:74355800 original size:44 final size:42
Alignment explanation
Indices: 74355663--74355811 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 42
74355653 TTCAACGAAC
74355663 TCGCACACTTAGTGCCAATTAATT--CTTCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCC-ATTAATTAAC-T-GAAGCTATAATTGTA
* *
74355706 TCGCACACTTAGTGCCAAATAATTAGCTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCC-ATTAATTAACTGAAGCTATAATTGTA
74355749 TCGCACACTTAGTGCCATTACATTAAACTGAA-CT-TATATTGGTA
1 TCGCACACTTAGTGCCATTA-ATT-AACTGAAGCTATA-ATT-GTA
* * *
74355793 TCACACACATAGTGTCATT
1 TCGCACACTTAGTGCCATT
74355812 TACTCAGCTA
Statistics
Matches: 94, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
42 5 0.05
43 62 0.66
44 26 0.28
45 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (42 bp):
TCGCACACTTAGTGCCATTAATTAACTGAAGCTATAATTGTA
Found at i:74361970 original size:29 final size:29
Alignment explanation
Indices: 74361900--74362015 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 29
74361890 TACCTATATC
* ** *
74361900 TGGCCCACCAGGCCC-AATCACAACTGTA
1 TGGCCCATCAGGCCCAAATCACATTTATA
* * * * **
74361928 CGGTCCATTAGGCCCAATTTGCATTTATA
1 TGGCCCATCAGGCCCAAATCACATTTATA
74361957 TGGCCCATCAGGCCCAAATCACATTTATA
1 TGGCCCATCAGGCCCAAATCACATTTATA
*
74361986 TGGCCCATCAGGCCCAAATCACATTCATA
1 TGGCCCATCAGGCCCAAATCACATTTATA
74362015 T
1 T
74362016 TCATGCTTGG
Statistics
Matches: 70, Mismatches: 17, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
28 11 0.16
29 59 0.84
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (29 bp):
TGGCCCATCAGGCCCAAATCACATTTATA
Found at i:74374745 original size:40 final size:40
Alignment explanation
Indices: 74374688--74374887 Score: 298
Period size: 40 Copynumber: 5.0 Consensus size: 40
74374678 GATGATAACG
* * *
74374688 GGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
74374728 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
74374768 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
74374808 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
74374848 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
74374888 AGTTAAATCC
Statistics
Matches: 151, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
39 2 0.01
40 148 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:74379053 original size:46 final size:46
Alignment explanation
Indices: 74378878--74379053 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
74378868 TGTAACCCTC
* * * * *
74378878 CCATAAGAGAATTCGGACTCAACTCAACGAGCTCGGGCTTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74378924 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
74378974 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
74379017 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
74379054 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74379072 original size:46 final size:46
Alignment explanation
Indices: 74378927--74379065 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 46
74378917 TTCGCATCCA
*
74378927 TAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
74378975 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
74379020 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
74379066 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.38
47 29 0.39
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:74384783 original size:40 final size:40
Alignment explanation
Indices: 74384727--74384941 Score: 267
Period size: 40 Copynumber: 5.4 Consensus size: 40
74384717 GATGATAACA
* * * *
74384727 GGGCTAAGTCCAGAAGGCATTTGAGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
74384767 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
* *
74384807 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATATCG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
74384847 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
74384887 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
74384927 -GGTTAAATCCCGAAG
1 GGGCTAAGTCCCGAAG
74384942 ATACTTGGTT
Statistics
Matches: 157, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.10
40 141 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:74386360 original size:17 final size:17
Alignment explanation
Indices: 74386321--74386361 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
74386311 ATATTACTTG
*
74386321 TGATTATGGAATTGAAT
1 TGATTATGGAATTAAAT
74386338 TGATTATGGAATATAAAT
1 TGATTATGGAAT-TAAAT
74386356 T-ATTAT
1 TGATTAT
74386362 TAACTGTTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (17 bp):
TGATTATGGAATTAAAT
Found at i:74386817 original size:24 final size:24
Alignment explanation
Indices: 74386764--74386818 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
74386754 CCACAACCAC
* * *
74386764 TGCCTCCTACTTTACCACCTGTTA
1 TGCCTCCTACTATACCACCTCTGA
* *
74386788 TACCTCCTACTATACCCCCTCTGA
1 TGCCTCCTACTATACCACCTCTGA
74386812 TGCCTCC
1 TGCCTCC
74386819 ACCTCCTCCA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.16, C:0.44, G:0.07, T:0.33
Consensus pattern (24 bp):
TGCCTCCTACTATACCACCTCTGA
Found at i:74391507 original size:10 final size:10
Alignment explanation
Indices: 74391492--74391516 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
74391482 GAACTCATAT
74391492 TAGCTTAATC
1 TAGCTTAATC
74391502 TAGCTTAATC
1 TAGCTTAATC
74391512 TAGCT
1 TAGCT
74391517 ATTCCGAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (10 bp):
TAGCTTAATC
Found at i:74396459 original size:33 final size:33
Alignment explanation
Indices: 74396417--74396484 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
74396407 TTTTGCAACT
74396417 TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
1 TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
74396450 TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
1 TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
74396483 TA
1 TA
74396485 ACACCTTTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.40
Consensus pattern (33 bp):
TATGCAAAATAGTCCTTTTAGGTGTTTCCATGC
Found at i:74398220 original size:18 final size:18
Alignment explanation
Indices: 74398197--74398249 Score: 97
Period size: 18 Copynumber: 2.9 Consensus size: 18
74398187 GAACTTGCAT
*
74398197 ACTGTTTACTGTTACTGC
1 ACTGTTTACTATTACTGC
74398215 ACTGTTTACTATTACTGC
1 ACTGTTTACTATTACTGC
74398233 ACTGTTTACTATTACTG
1 ACTGTTTACTATTACTG
74398250 TAATGGGCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.45
Consensus pattern (18 bp):
ACTGTTTACTATTACTGC
Found at i:74402187 original size:40 final size:40
Alignment explanation
Indices: 74402106--74402326 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
74402096 AAACCAAGTA
** * *
74402106 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
74402145 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGTACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
74402185 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
74402225 CCTTCGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
74402265 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
74402305 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
74402327 CAATCCGAAT
Statistics
Matches: 168, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 26 0.15
40 142 0.85
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:74405292 original size:46 final size:45
Alignment explanation
Indices: 74405207--74405340 Score: 137
Period size: 46 Copynumber: 2.9 Consensus size: 45
74405197 CATTGGGTGG
* * * *
74405207 TATGTGAGCCAGTGTAAGACACGTCTGGGACATGTATCAGCCACAT
1 TATGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGCC-CAT
* * *
74405253 TATGAGAGCTAGTTTAAGACATGTCTGGGAAATGCATCAG--CAT
1 TATGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGCCCAT
* *
74405296 TGAGACGAGAGCAAGTGTAAGACATGTCTAGGACATGCATCAGCC
1 T---ATGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGCC
74405341 TCAAGATATA
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
43 4 0.06
46 68 0.94
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (45 bp):
TATGAGAGCAAGTGTAAGACATGTCTGGGACATGCATCAGCCCAT
Found at i:74405454 original size:49 final size:49
Alignment explanation
Indices: 74405392--74405512 Score: 172
Period size: 49 Copynumber: 2.5 Consensus size: 49
74405382 TGTTGCGTGT
*
74405392 CAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * * * *
74405441 CAGTGTAAAACCTGTCTGGGACATGGCATTGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
74405490 CAGTGTAAGACCTGTCTGGGACA
1 CAGTGTAAGACCTGTCTGGGACA
74405513 CAGCATCAAC
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
48 1 0.02
49 63 0.98
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:74422607 original size:46 final size:46
Alignment explanation
Indices: 74422536--74422664 Score: 147
Period size: 46 Copynumber: 2.8 Consensus size: 46
74422526 AGTGGCATGT
* * *
74422536 GAGCCAGTGTAAGATATGTCAGGGACATGCATCGGCCACATT-ATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTGACGA
* * *
74422582 GAGCCAATGCAAGACATGTCTGGGACATGTATCGG--CATTGAGACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATT--GACGA
*
74422628 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC
74422665 TCGAGATATA
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
43 4 0.06
46 64 0.94
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGACGA
Found at i:74426401 original size:18 final size:19
Alignment explanation
Indices: 74426371--74426408 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
74426361 CAAAAATAAA
74426371 TAAATATTTTTATTATATT
1 TAAATATTTTTATTATATT
*
74426390 TAAATA-TTTTATTTTATT
1 TAAATATTTTTATTATATT
74426408 T
1 T
74426409 TCATATTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
TAAATATTTTTATTATATT
Found at i:74426537 original size:50 final size:50
Alignment explanation
Indices: 74426483--74426592 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
74426473 ACTTCAAATT
*
74426483 TCAATAATTGAGCTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
1 TCAATTATTGAGCTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
* *
74426533 TCAATTATTGTGGTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
1 TCAATTATTGAGCTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
74426583 TCAATTATTG
1 TCAATTATTG
74426593 TGGTGACCCA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (50 bp):
TCAATTATTGAGCTTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGC
Found at i:74426593 original size:50 final size:50
Alignment explanation
Indices: 74426496--74426596 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
74426486 ATAATTGAGC
74426496 TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
1 TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
74426546 TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
1 TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
74426596 T
1 T
74426597 GACCCAACTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (50 bp):
TTTTCTTATTGGCACCTCAAATTTCAATAAGAAAAGCTCAATTATTGTGG
Found at i:74439167 original size:48 final size:48
Alignment explanation
Indices: 74439114--74439214 Score: 175
Period size: 48 Copynumber: 2.1 Consensus size: 48
74439104 TTTATATGAA
74439114 TTGAAATAATTTGAACATATGTGGTAAATTTGACTGAGTGAATAGTAG
1 TTGAAATAATTTGAACATATGTGGTAAATTTGACTGAGTGAATAGTAG
* * *
74439162 TTGAAATAATTTTAATATATGTGGTAAATTTGACTGGGTGAATAGTAG
1 TTGAAATAATTTGAACATATGTGGTAAATTTGACTGAGTGAATAGTAG
74439210 TTGAA
1 TTGAA
74439215 GTAGGGTTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.37, C:0.03, G:0.23, T:0.38
Consensus pattern (48 bp):
TTGAAATAATTTGAACATATGTGGTAAATTTGACTGAGTGAATAGTAG
Found at i:74439470 original size:24 final size:25
Alignment explanation
Indices: 74439442--74439494 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 25
74439432 AATATGAGAA
74439442 AGTATGTGATATTTTCATGAG-GGG
1 AGTATGTGATATTTTCATGAGAGGG
74439466 AGTATGTGATATTTTCATGAGAGGG
1 AGTATGTGATATTTTCATGAGAGGG
74439491 AGTA
1 AGTA
74439495 AATACGCGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 21 0.75
25 7 0.25
ACGTcount: A:0.28, C:0.04, G:0.32, T:0.36
Consensus pattern (25 bp):
AGTATGTGATATTTTCATGAGAGGG
Found at i:74445993 original size:7 final size:8
Alignment explanation
Indices: 74445973--74446014 Score: 77
Period size: 8 Copynumber: 5.4 Consensus size: 8
74445963 CTCACATTAA
74445973 TAAAAAAT
1 TAAAAAAT
74445981 TAAAAAAT
1 TAAAAAAT
74445989 TAAAAAAT
1 TAAAAAAT
74445997 TAAAAAAT
1 TAAAAAAT
74446005 T-AAAAAT
1 TAAAAAAT
74446012 TAA
1 TAA
74446015 GATAAAATAC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 7 0.21
8 26 0.79
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
TAAAAAAT
Found at i:74446130 original size:10 final size:10
Alignment explanation
Indices: 74446123--74446163 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
74446113 AACGATAATA
74446123 AATTATAAAT
1 AATTATAAAT
74446133 AATTATAAAT
1 AATTATAAAT
74446143 AATTATTAAA-
1 AATTA-TAAAT
*
74446153 AATTCTAAAT
1 AATTATAAAT
74446163 A
1 A
74446164 TATATAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 4 0.14
10 20 0.71
11 4 0.14
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (10 bp):
AATTATAAAT
Found at i:74447363 original size:6 final size:6
Alignment explanation
Indices: 74447354--74447379 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
74447344 AACAAAAACA
74447354 ATTTAT ATTTAT ATTTAT ATTTAT AT
1 ATTTAT ATTTAT ATTTAT ATTTAT AT
74447380 CATCTTTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
ATTTAT
Found at i:74449332 original size:5 final size:5
Alignment explanation
Indices: 74449299--74449326 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
74449289 TTTAAGTAAT
74449299 ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATA
74449327 ATATAACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:74449354 original size:16 final size:19
Alignment explanation
Indices: 74449306--74449347 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
74449296 AATATATAAT
* *
74449306 ATAATATAA-TATAATATA
1 ATAATATAACTAAAACATA
74449324 ATAATATAACTAAAACATA
1 ATAATATAACTAAAACATA
74449343 A-AATA
1 ATAATA
74449348 AACAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 13 0.62
19 8 0.38
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAATATAACTAAAACATA
Found at i:74453169 original size:17 final size:17
Alignment explanation
Indices: 74453144--74453195 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
74453134 TTTTTATCAT
*
74453144 TTATTATTTATCGGGCA
1 TTATCATTTATCGGGCA
**
74453161 TTATCATTTATTTCAAGCA
1 TTATCATTTA--TCGGGCA
74453180 TTATCATTTATCGGGC
1 TTATCATTTATCGGGC
74453196 TTTGTCGGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 13 0.46
19 15 0.54
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.46
Consensus pattern (17 bp):
TTATCATTTATCGGGCA
Found at i:74455700 original size:30 final size:29
Alignment explanation
Indices: 74455657--74455717 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
74455647 CAAGTAGCCG
74455657 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
74455686 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
74455716 AA
1 AA
74455718 ACTTCATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.23
30 24 0.77
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:74462608 original size:18 final size:18
Alignment explanation
Indices: 74462547--74462608 Score: 54
Period size: 20 Copynumber: 3.3 Consensus size: 18
74462537 TAAATAATAT
* *
74462547 ATAATATAATATAATATAA
1 ATAATATAATAAAACAT-A
* *
74462566 TATAATATAATATAATATA
1 -ATAATATAATAAAACATA
74462585 ATAATATAACTAAAACATA
1 ATAATATAA-TAAAACATA
74462604 A-AATA
1 ATAATA
74462609 AAGAAAGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
18 13 0.33
19 9 0.23
20 17 0.44
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATATAATAAAACATA
Found at i:74462610 original size:5 final size:5
Alignment explanation
Indices: 74462545--74462587 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
74462535 TTTAAATAAT
74462545 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
74462588 ATATAACTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:74462674 original size:13 final size:14
Alignment explanation
Indices: 74462651--74462701 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
74462641 ACAGAAGGTT
*
74462651 GAAACGAAAAAGGGA
1 GAAA-GAAAAAGGAA
74462666 GAAAGAAAAAGGAA
1 GAAAGAAAAAGGAA
74462680 GAAAG-AAAA--AA
1 GAAAGAAAAAGGAA
74462691 GAAAGAAAAAG
1 GAAAGAAAAAG
74462702 AAAGGGGAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 7 0.21
12 4 0.12
13 4 0.12
14 14 0.42
15 4 0.12
ACGTcount: A:0.71, C:0.02, G:0.27, T:0.00
Consensus pattern (14 bp):
GAAAGAAAAAGGAA
Found at i:74463417 original size:16 final size:17
Alignment explanation
Indices: 74463379--74463417 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
74463369 TAAGTAAATA
74463379 ATATT-ATATTATAATT
1 ATATTAATATTATAATT
74463395 ATATTAATATTATAA-T
1 ATATTAATATTATAATT
74463411 ATATTAA
1 ATATTAA
74463418 ATGAATAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTAATATTATAATT
Found at i:74463440 original size:14 final size:14
Alignment explanation
Indices: 74463421--74463450 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
74463411 ATATTAAATG
*
74463421 AATAAAGAAAATAA
1 AATAAAAAAAATAA
74463435 AATAAAAAAAATAA
1 AATAAAAAAAATAA
74463449 AA
1 AA
74463451 AAGAAAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.13
Consensus pattern (14 bp):
AATAAAAAAAATAA
Found at i:74473576 original size:92 final size:92
Alignment explanation
Indices: 74473416--74473803 Score: 542
Period size: 92 Copynumber: 4.2 Consensus size: 92
74473406 ATGTACATGT
* * * * *
74473416 GGTAATCCGTTATACCGATATGTTGTAGTAAAACTACCAGTTCAGTCAAAGGTACGTAGCGTAAC
1 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
*
74473481 TAACGTACATACGGTACAGTGCAGTGC
66 TAACGTACATACGGTACAGTGCAATGC
* * * * * * *
74473508 GGTAATTCGTTATACCGATAGCTTACAGTAAAATTGCTAGTTCAGTCAAAGGTATGTAGCGTAGC
1 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
*
74473573 TAACGTACATGCGGTACAGTGCAATGC
66 TAACGTACATACGGTACAGTGCAATGC
* * *
74473600 GGTAATCCGCTATATCGATAGGTTGCAGTAAAATTGCCAGTTCAGTCAAAGGTACGTAGTGTAGC
1 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
* ** *
74473665 TAACGAACATACGACACAGTGCAATGG
66 TAACGTACATACGGTACAGTGCAATGC
*
74473692 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTATGTAGCGTAGC
1 GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
* *
74473757 TAACGTACATATGGTACAGTCCAATGC
66 TAACGTACATACGGTACAGTGCAATGC
* *
74473784 AGTAATTCGCTATACCGATA
1 GGTAATCCGCTATACCGATA
74473804 TCGATAAAGT
Statistics
Matches: 259, Mismatches: 37, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 259 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.26
Consensus pattern (92 bp):
GGTAATCCGCTATACCGATAGGTTGCAGTAAAACTGCCAGTTCAGTCAAAGGTACGTAGCGTAGC
TAACGTACATACGGTACAGTGCAATGC
Found at i:74475148 original size:26 final size:26
Alignment explanation
Indices: 74475105--74475154 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
74475095 TAAAATGAAA
* * * *
74475105 TAAAAATAAGTAGTAGAATAAAAACT
1 TAAAAAGAAGAAGAAGAAGAAAAACT
74475131 TAAAAAGAAGAAGAAGAAGAAAAA
1 TAAAAAGAAGAAGAAGAAGAAAAA
74475155 AATTCATCCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.68, C:0.02, G:0.16, T:0.14
Consensus pattern (26 bp):
TAAAAAGAAGAAGAAGAAGAAAAACT
Found at i:74475801 original size:18 final size:17
Alignment explanation
Indices: 74475769--74475802 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
74475759 GTCACGAAAT
*
74475769 CCCTCTCATGACGTTGC
1 CCCTCTCACGACGTTGC
74475786 CCCTCGTCACGACGTTG
1 CCCTC-TCACGACGTTG
74475803 TGCCTATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.12, C:0.41, G:0.21, T:0.26
Consensus pattern (17 bp):
CCCTCTCACGACGTTGC
Found at i:74479750 original size:20 final size:20
Alignment explanation
Indices: 74479725--74479767 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
74479715 TAGAAAATGA
74479725 TTTTTA-AAAAATGAATTTAT
1 TTTTTAGAAAAATGAATTT-T
*
74479745 TTTTTAGAAAAATTAATTTT
1 TTTTTAGAAAAATGAATTTT
74479765 TTT
1 TTT
74479768 AGTGTTTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTTTAGAAAAATGAATTTT
Found at i:74490635 original size:15 final size:15
Alignment explanation
Indices: 74490617--74490648 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
74490607 ACTAGAAGTG
74490617 CTCTCAACAGAAACC
1 CTCTCAACAGAAACC
74490632 CTCTCAACAGAAACC
1 CTCTCAACAGAAACC
74490647 CT
1 CT
74490649 TAAGTTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.41, G:0.06, T:0.16
Consensus pattern (15 bp):
CTCTCAACAGAAACC
Found at i:74497369 original size:26 final size:26
Alignment explanation
Indices: 74497311--74497394 Score: 131
Period size: 26 Copynumber: 3.3 Consensus size: 26
74497301 CTGGAGGCCT
74497311 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
74497335 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
74497361 AGCCCTTTTCAATAAACTGGGGCAT-
1 AGCCCTTTTCAATAAACTGGGGCATA
74497386 AGCCCTTTT
1 AGCCCTTTT
74497395 GCACTTCCTC
Statistics
Matches: 57, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
23 5 0.09
24 7 0.12
25 19 0.33
26 26 0.46
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:74525779 original size:34 final size:34
Alignment explanation
Indices: 74525741--74525809 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
74525731 TTCCAAAACT
74525741 TAGCTTAAACCACAACTATATATACAAGTGACCA
1 TAGCTTAAACCACAACTATATATACAAGTGACCA
74525775 TAGCTTAAACCACAACTATATATACAAGTGACCA
1 TAGCTTAAACCACAACTATATATACAAGTGACCA
74525809 T
1 T
74525810 CAATTCACCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.43, C:0.23, G:0.09, T:0.25
Consensus pattern (34 bp):
TAGCTTAAACCACAACTATATATACAAGTGACCA
Found at i:74527205 original size:47 final size:47
Alignment explanation
Indices: 74527151--74527602 Score: 699
Period size: 47 Copynumber: 9.6 Consensus size: 47
74527141 TATTTGAATA
* *
74527151 AATGTGAAAGTGCATATATGTGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
74527198 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
74527245 AATGTGAAACTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
74527294 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
74527341 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
74527388 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
74527435 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
74527482 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
74527529 AATGTGAAAGTGTATATATGTGAT-AGAGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATG
* * *
74527576 GATGTGAAAGTGTATAAATGAGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
74527603 TCTCGAAGGG
Statistics
Matches: 378, Mismatches: 23, Indels: 7
0.93 0.06 0.02
Matches are distributed among these distances:
46 2 0.01
47 330 0.87
48 2 0.01
49 44 0.12
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:74529339 original size:40 final size:40
Alignment explanation
Indices: 74529016--74529327 Score: 471
Period size: 40 Copynumber: 7.8 Consensus size: 40
74529006 GAGAATTGAG
*
74529016 AGTGACGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
74529056 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
74529096 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
74529136 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
**
74529176 AGTGATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
74529216 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** *
74529256 AGTGATATATCCGTGCTAAACCCCGAAGAGTATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
74529296 GGTGTTATATCCTGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
74529328 ATCATGCTGG
Statistics
Matches: 252, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 252 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:74532058 original size:69 final size:70
Alignment explanation
Indices: 74531926--74532058 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
74531916 TAGTTTATTA
* * * * *
74531926 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
74531991 CTTAG
66 CTTAG
74531996 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
74532059 GTTATGTACT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:74533491 original size:47 final size:47
Alignment explanation
Indices: 74533437--74533935 Score: 845
Period size: 47 Copynumber: 10.6 Consensus size: 47
74533427 TATTTGAATA
*
74533437 AATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
74533484 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
74533531 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
74533580 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
74533627 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
74533674 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
74533721 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
74533768 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
74533815 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
74533862 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
74533909 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
74533936 TCCCGAAGGG
Statistics
Matches: 429, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 384 0.90
49 45 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:74537052 original size:29 final size:30
Alignment explanation
Indices: 74537018--74537078 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
74537008 CAAGTAGTCG
74537018 AAGCTAG-TTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
*
74537047 AAGCTAGTTTAAATTGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
74537077 AA
1 AA
74537079 ACTTCCTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.26
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:74538264 original size:24 final size:25
Alignment explanation
Indices: 74538237--74538286 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
74538227 AGAATAAAAC
74538237 AATT-AAAAT-ACATTAATATTTCAA
1 AATTCAAAATCACATTAAT-TTTCAA
**
74538261 AATTCAATTTCACATTAATTTTCAA
1 AATTCAAAATCACATTAATTTTCAA
74538286 A
1 A
74538287 TTTTACATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 4 0.18
25 10 0.45
26 8 0.36
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (25 bp):
AATTCAAAATCACATTAATTTTCAA
Found at i:74542863 original size:49 final size:47
Alignment explanation
Indices: 74542732--74543565 Score: 1270
Period size: 49 Copynumber: 17.6 Consensus size: 47
74542722 TATTTGAATA
* *
74542732 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
74542779 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
74542826 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
74542875 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
74542924 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
74542973 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
74543020 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
74543069 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
74543116 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATTTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
74543165 AATGTGAAA--G----TATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
74543206 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
74543255 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTAATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
74543304 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
74543353 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
74543400 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
74543447 AATGTGAAAGTG--TATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
74543492 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
74543539 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
74543566 TCCCGAAGGG
Statistics
Matches: 747, Mismatches: 24, Indels: 32
0.93 0.03 0.04
Matches are distributed among these distances:
41 38 0.05
43 1 0.00
45 45 0.06
47 296 0.40
49 367 0.49
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:74542863 original size:96 final size:96
Alignment explanation
Indices: 74542732--74543565 Score: 1354
Period size: 96 Copynumber: 8.8 Consensus size: 96
74542722 TATTTGAATA
74542732 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
74542795 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
74542826 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
74542891 TATATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
74542924 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
74542989 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
74543020 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
74543085 TATGTGATAAGGCCGAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
74543116 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATTTGATGAATGTGAAA--G----
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
74543175 TATGTGATAAGGCCTAATGGCCAATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
74543206 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
*
74543271 TATATGTGATAAGGCCGAATGGCCAATGTAATG
64 TATATGTGATAAGGCCGAATGGCCAATGTGATG
74543304 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
74543369 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
74543400 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
74543461 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * * * * *
74543492 AATGTGAAAGTG--TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
74543555 AATGTGATAAG
66 TATGTGATAAG
74543566 TCCCGAAGGG
Statistics
Matches: 699, Mismatches: 27, Indels: 28
0.93 0.04 0.04
Matches are distributed among these distances:
90 85 0.12
92 87 0.12
94 72 0.10
96 273 0.39
98 182 0.26
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:74543067 original size:22 final size:22
Alignment explanation
Indices: 74543039--74543114 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
74543029 GTGTATATAT
74543039 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * ***
74543061 ATGTGATGAATG-TGAAAGTGTATA
1 ATGTGAT-AAGGCCG-AA-TGGCCA
74543085 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
74543108 ATGTGAT
1 ATGTGAT
74543115 GAATGTGAAA
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 15 0.38
23 8 0.21
24 8 0.21
25 8 0.21
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:74543445 original size:22 final size:22
Alignment explanation
Indices: 74543417--74543490 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
74543407 AAGTGTATAT
74543417 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* * ***
74543439 ATGTGATGAATG--TGAAAGTGTAT
1 ATGTGAT-AAGGCCT-AATG-GCCG
74543462 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
74543484 ATGTGAT
1 ATGTGAT
74543491 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:74543822 original size:37 final size:37
Alignment explanation
Indices: 74543684--74543821 Score: 231
Period size: 37 Copynumber: 3.7 Consensus size: 37
74543674 CCGAGCTCTA
74543684 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
74543721 AAGACCCGATGACTACGTGTGGAGATTATGTCCAGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
74543758 AAGACCTGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
74543795 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
74543822 TCGTCTGAGC
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 94 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:74545457 original size:68 final size:63
Alignment explanation
Indices: 74545364--74545554 Score: 212
Period size: 61 Copynumber: 3.0 Consensus size: 63
74545354 ATTTTAATAT
*
74545364 ATTTAATATTAAATTTAAATTAATATTTATCTTATTAGTATTTTATTAATTTAATATTAAAGTGA
1 ATTTAATATTAAA-TTAAATTAATATTTATCTTATTAGTATTATATT-ATTTAATATTAAAGT-A
*
74545429 TT
63 -G
*
74545431 ATCTTAATATTAAATTAAATTAAATATTTATCTTA-TAGGTA-TATATCATATTAA-ATT-AA-T
1 AT-TTAATATTAAATTAAATT-AATATTTATCTTATTA-GTATTATATTAT-TTAATATTAAAGT
74545491 AG
62 AG
* *
74545493 ATTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTATTTAATATTAAAG
1 ATTTAATATTAAATTAAAT-TAATATTTATCTT-ATTAGTATTATATTATTTAATATTAAAG
74545555 AAATTAAGTT
Statistics
Matches: 107, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
61 28 0.26
62 11 0.10
63 12 0.11
64 3 0.03
65 2 0.02
66 5 0.05
67 19 0.18
68 27 0.25
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (63 bp):
ATTTAATATTAAATTAAATTAATATTTATCTTATTAGTATTATATTATTTAATATTAAAGTAG
Found at i:74552620 original size:49 final size:48
Alignment explanation
Indices: 74552505--74552622 Score: 137
Period size: 48 Copynumber: 2.4 Consensus size: 48
74552495 TCGATGCCAT
* * *
74552505 GTCCTAAACAGGTCTTATACTGACTATCATATATCGAGGCCGATCCGT
1 GTCCCAAACAGGTCTTACACTGACTATCATATATCGAGGCCGATCCGA
* * * * * **
74552553 GTCCCAGACAGGTTTTACACTTACTTTCATATATCGAGGCTGATGTTGA
1 GTCCCAAACAGGTCTTACACTGACTATCATATATCGAGGCCGAT-CCGA
74552602 GTCCCAAACAGGTCTTACACT
1 GTCCCAAACAGGTCTTACACT
74552623 AACACACAAC
Statistics
Matches: 57, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
48 37 0.65
49 20 0.35
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (48 bp):
GTCCCAAACAGGTCTTACACTGACTATCATATATCGAGGCCGATCCGA
Found at i:74555567 original size:18 final size:18
Alignment explanation
Indices: 74555544--74555579 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
74555534 TTCCCGGGTT
74555544 GTAGTCGATTATCAACTC
1 GTAGTCGATTATCAACTC
**
74555562 GTAGTCTTTTATCAACTC
1 GTAGTCGATTATCAACTC
74555580 CAACCATCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (18 bp):
GTAGTCGATTATCAACTC
Found at i:74559772 original size:40 final size:40
Alignment explanation
Indices: 74559712--74559895 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
74559702 TATTCGAATG
* *
74559712 ATATCCGGACTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
74559752 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
74559792 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
74559832 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* *
74559872 ATATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
74559896 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:74559845 original size:80 final size:80
Alignment explanation
Indices: 74559712--74559931 Score: 261
Period size: 80 Copynumber: 2.8 Consensus size: 80
74559702 TATTCGAATG
* * * * *
74559712 ATATCCGGACTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
* *
74559776 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
*
74559792 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
*
74559856 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * * *
74559872 ATATCTGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAG
74559932 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 88 0.72
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:74572047 original size:20 final size:21
Alignment explanation
Indices: 74572022--74572061 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
74572012 CCCTTGAAAT
74572022 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
74572042 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
74572062 TCATTATAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.20, C:0.30, G:0.40, T:0.10
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:74573320 original size:50 final size:47
Alignment explanation
Indices: 74573203--74573421 Score: 184
Period size: 47 Copynumber: 4.6 Consensus size: 47
74573193 GGTGTAATGC
* *
74573203 CGATGCCATGTCCCAGACATGGTCTTTCACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT
* *
74573250 CGATGCAATGTCCCAGACATGGTCTTACACTAGCTC-TCACATATCCATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-C--AT-CAAGT
* * * * *
74573300 CGATACCATGTCCTAGACATGGTCTTACACT-GACACAT-C-TCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCCATC-AAGT
*
74573346 CGATG-CATGTCCCAGACAT-GTCTTACACTAGTTC-TCGTC-TCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC--CATCAA-GT
* * *
74573392 TGATGCCATGTCCTAGACATGGCCTTACAC
1 CGATGCCATGTCCCAGACATGGTCTTACAC
74573422 CGACTCTCAT
Statistics
Matches: 138, Mismatches: 20, Indels: 27
0.75 0.11 0.15
Matches are distributed among these distances:
43 1 0.01
44 11 0.08
45 16 0.12
46 16 0.12
47 47 0.34
48 8 0.06
49 4 0.03
50 34 0.25
51 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT
Found at i:74573453 original size:94 final size:94
Alignment explanation
Indices: 74573250--74573471 Score: 261
Period size: 94 Copynumber: 2.3 Consensus size: 94
74573240 TCCATCAAGT
*
74573250 CGATGCAATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCATGTCGATACCATGTCCTA
1 CGATGC-ATGTCCCAGACAT-GTCTTACACTAGCTCTCACATATCAATGTCGATACCATGTCCTA
* *
74573315 GACATGGTCTTACACTGACACATCTCGTAGC
64 GACATGGCCTTACACCGACACATCTCGTAGC
* * * * *
74573346 CGATGCATGTCCCAGACATGTCTTACACTAG-T-TCTCGTCTCAATGTTGATGCCATGTCCTAGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCACATATCAATGTCGATACCATGTCCTAGA
* * *
74573409 CATGGCCTTACACCGACTC-TCATAATGTGGC
66 CATGGCCTTACACCGACACATC-T--CGTAGC
* *
74573440 CGATGCATCTCCCAAACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
74573472 GCACAAATGA
Statistics
Matches: 109, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
91 2 0.02
92 42 0.39
93 1 0.01
94 45 0.41
95 13 0.12
96 6 0.06
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCACATATCAATGTCGATACCATGTCCTAGA
CATGGCCTTACACCGACACATCTCGTAGC
Found at i:74575582 original size:20 final size:20
Alignment explanation
Indices: 74575557--74575597 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
74575547 ATCTTCCGTT
74575557 GAACCATTTAGAATACTACA
1 GAACCATTTAGAATACTACA
74575577 GAACCATTTAGAATACTACA
1 GAACCATTTAGAATACTACA
74575597 G
1 G
74575598 GATATTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.20, G:0.12, T:0.24
Consensus pattern (20 bp):
GAACCATTTAGAATACTACA
Found at i:74575783 original size:49 final size:49
Alignment explanation
Indices: 74575640--74575808 Score: 205
Period size: 49 Copynumber: 3.4 Consensus size: 49
74575630 GTTGACGCTA
*
74575640 TGTCCCAGACAGGCCTTACACTGACTTTCATATATCGAGGTCGATACTG
1 TGTCCCAGACAGGCCTTACACTGACTTTCATATATCGAGGTCGATGCTG
* *
74575689 TGTCCCAGATAGGCCTTACACTGACTTTCATATATCGAGGTCGATGTTG
1 TGTCCCAGACAGGCCTTACACTGACTTTCATATATCGAGGTCGATGCTG
* * * * * **
74575738 TGTCCCAAACAGGTCTTACACTGGCTCTCATCTATCG-GTGTCGATGCCA
1 TGTCCCAGACAGGCCTTACACTGACTTTCATATATCGAG-GTCGATGCTG
* * *
74575787 TGTCCTAGATAGGTCTTACACT
1 TGTCCCAGACAGGCCTTACACT
74575809 AGCTTGTATA
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 1 0.01
49 103 0.99
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (49 bp):
TGTCCCAGACAGGCCTTACACTGACTTTCATATATCGAGGTCGATGCTG
Found at i:74575832 original size:98 final size:97
Alignment explanation
Indices: 74575639--74575954 Score: 259
Period size: 98 Copynumber: 3.3 Consensus size: 97
74575629 TGTTGACGCT
* * * * ** * *
74575639 ATGTCCCAGACAGGCCTTACACTGACTTTCATATATCGAG-GTCGATACTGTGTCCCAGATAGGC
1 ATGTCCCAGACAGGTCTTACACTGGCTTTCATCTATCG-GTGTCGATGCCATGTCCAAGATAGGT
* *** *
74575703 CTTACACT-GACTT-TCATATATCGAGGTCGATGTT
65 CTTACACTAG-CTTGT-ATATCTCGAAACCGATG-C
* * * *
74575737 GTGTCCCAAACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATGCCATGTCCTAGATAGGTC
1 ATGTCCCAGACAGGTCTTACACTGGCTTTCATCTATCGGTGTCGATGCCATGTCCAAGATAGGTC
74575802 TTACACTAGCTTGTATATCTCGAAACCGATGC
66 TTACACTAGCTTGTATATCTCGAAACCGATGC
* * * * ** * * *
74575834 ATGCCCCAGACATGTCTTACACTAGCTTTCGTC--TCAATGCCGATG-CATGTCCAAGACATGTC
1 ATGTCCCAGACAGGTCTTACACTGGCTTTCATCTATCGGTGTCGATGCCATGTCCAAGATAGGTC
** *
74575896 TTACACTAG-TTGGTATATCTCGAGGCCGATAC
66 TTACACTAGCTT-GTATATCTCGAAACCGATGC
* *
74575928 ATGTCCTAGACATGTCTTACACTGGCT
1 ATGTCCCAGACAGGTCTTACACTGGCT
74575955 CTTAATATAT
Statistics
Matches: 179, Mismatches: 35, Indels: 12
0.79 0.15 0.05
Matches are distributed among these distances:
93 2 0.01
94 64 0.36
95 9 0.05
97 27 0.15
98 75 0.42
99 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (97 bp):
ATGTCCCAGACAGGTCTTACACTGGCTTTCATCTATCGGTGTCGATGCCATGTCCAAGATAGGTC
TTACACTAGCTTGTATATCTCGAAACCGATGC
Found at i:74575891 original size:46 final size:46
Alignment explanation
Indices: 74575779--74576231 Score: 321
Period size: 46 Copynumber: 9.7 Consensus size: 46
74575769 CTATCGGTGT
* * * * *
74575779 CGATGCCATGTCCTAGATAGGTCTTACACTAGCTTGTATATCTCGAA-AC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTT-T-CATCTC-AAGGC
* * *
74575828 CGATGCATGCCCCAGACATGTCTTACACTAGCTTTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATCTCAAGGC
* * *
74575874 CGATGCATGTCCAAGACATGTCTTACACTAG-TTGGTATATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT--T-CATCTCAAGGC
* * * * * * *
74575922 CGATACATGTCCTAGACATGTCTTACACTGGCTCTTAATAT-ATGGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TTCATCTCAAGGC
* * * * * * *
74575968 CGGTGCATGTCCTAGACAGGTCTTACACT-G-ATACA-CAACAA-GT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATC-TCAAGGC
* * * *
74576011 TGACGCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCAAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTT-T-CATCTCAAGGC
* * * *
74576060 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAAGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATCTCAAGGC
* *
74576106 CGATGCATGTCCCAGACATGTCTTACACTGGCTAGTAT-ATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT--T-TCATCTCAAGGC
* * * * ** *
74576154 CTATGCATGTCCCAGACATGTCTTACACTGGCTCTCAATAT-GTGGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTC-ATCTCAAGGC
74576200 CGATGCATGTCCCAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
74576232 ACACATATCA
Statistics
Matches: 322, Mismatches: 62, Indels: 43
0.75 0.15 0.10
Matches are distributed among these distances:
43 5 0.02
44 23 0.07
45 7 0.02
46 135 0.42
47 9 0.03
48 130 0.40
49 12 0.04
50 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTTCATCTCAAGGC
Found at i:74575898 original size:94 final size:95
Alignment explanation
Indices: 74575779--74576231 Score: 339
Period size: 94 Copynumber: 4.8 Consensus size: 95
74575769 CTATCGGTGT
* * * * *
74575779 CGATGCCATGTCCTAGATAGGTCTTACACTAGCTTGTATATCTCGAAACCGATGCATGCCCCAGA
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAAATCGATGCATGTCCCAGA
* *
74575844 CATGTCTTACACTAGCT-T-TCGTCTCAATGC
65 CATGTCTTACACTAGCTATAT-ATCTCAAGGC
* *** * *
74575874 CGATGCATGTCCAAGACATGTCTTACACTAG-TTGGTATATCTCGAGGCCGATACATGTCCTAGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT-GTATATCTCGAAATCGATGCATGTCCCAGA
* * * * *
74575938 CATGTCTTACACTGGCTCT-TAATAT-ATGGA
65 CATGTCTTACACTAGCTATAT-ATCTCAAGGC
* * * * * * *
74575968 CGGTGCATGTCCTAGACAGGTCTT--AC-A-C-TG-ATA-CACAACAAGTTGACGCCATGTCCCA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGA-AA-TCGATG-CATGTCCCA
* *
74576026 GACAAGTCTTACACTAGCTTGTATATCTCAAGGC
63 GACATGTCTTACACTAGC-TATATATCTCAAGGC
* **
74576060 CGATGCATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTC-AAAGTCGATGCATGTCCCAGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAAA-TCGATGCATGTCCCAGA
* *
74576122 CATGTCTTACACTGGCTAGTATATCTCGAGGC
65 CATGTCTTACACTAGCTA-TATATCTCAAGGC
* * ** * *
74576154 CTATGCATGTCCCAGACATGTCTTACACTGGCTCTCAATATGT-G--GTCGATGCATGTCCCAGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGAAATCGATGCATGTCCCAGA
74576216 CATGTCTTACACTAGC
65 CATGTCTTACACTAGC
74576232 ACACATATCA
Statistics
Matches: 284, Mismatches: 54, Indels: 41
0.75 0.14 0.11
Matches are distributed among these distances:
87 3 0.01
88 3 0.01
89 3 0.01
90 25 0.09
91 6 0.02
92 27 0.10
93 3 0.01
94 188 0.66
95 17 0.06
96 5 0.02
97 4 0.01
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.28
Consensus pattern (95 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAAATCGATGCATGTCCCAGAC
ATGTCTTACACTAGCTATATATCTCAAGGC
Found at i:74576209 original size:232 final size:232
Alignment explanation
Indices: 74575783--74576228 Score: 687
Period size: 232 Copynumber: 1.9 Consensus size: 232
74575773 CGGTGTCGAT
* * *
74575783 GCCATGTCCTAGATAGGTCTTACACTAGCTTGTATATCTCGAAACCGATGCATGCCCCAGACATG
1 GCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCGAAACCGATGCATGCCCCAGACATG
* * * *
74575848 TCTTACACTAGCTTTCGTCTCAATGCCGATGCATGTCCAAGACATGTCTTACACTAGTTGGTATA
66 TCTTACACTAGCTCTCGTCTCAAAGCCGATGCATGTCCAAGACATGTCTTACACTAGCTAGTATA
* * *
74575913 TCTCGAGGCCGATACATGTCCTAGACATGTCTTACACTGGCTCTTAATATATGGACGGTGCATGT
131 TCTCGAGGCCGATACATGTCCCAGACATGTCTTACACTGGCTCTCAATATATGGACGATGCATGT
*
74575978 CCTAGACAGGTCTTACACTGATACACAACAAGTTGAC
196 CCCAGACAGGTCTTACACTGATACACAACAAGTTGAC
* *
74576015 GCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTC-AAGGCCGATGCATGTCCCAGACAT
1 GCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCGAA-ACCGATGCATGCCCCAGACAT
* * *
74576079 GTCTTACACTAGCTCTCGTCTCAAAGTCGATGCATGTCCCAGACATGTCTTACACTGGCTAGTAT
65 GTCTTACACTAGCTCTCGTCTCAAAGCCGATGCATGTCCAAGACATGTCTTACACTAGCTAGTAT
* * * *
74576144 ATCTCGAGGCCTATGCATGTCCCAGACATGTCTTACACTGGCTCTCAATATGTGGTCGATGCATG
130 ATCTCGAGGCCGATACATGTCCCAGACATGTCTTACACTGGCTCTCAATATATGGACGATGCATG
*
74576209 TCCCAGACATGTCTTACACT
195 TCCCAGACAGGTCTTACACT
74576229 AGCACACATA
Statistics
Matches: 192, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
231 2 0.01
232 190 0.99
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (232 bp):
GCCATGTCCCAGACAAGTCTTACACTAGCTTGTATATCTCGAAACCGATGCATGCCCCAGACATG
TCTTACACTAGCTCTCGTCTCAAAGCCGATGCATGTCCAAGACATGTCTTACACTAGCTAGTATA
TCTCGAGGCCGATACATGTCCCAGACATGTCTTACACTGGCTCTCAATATATGGACGATGCATGT
CCCAGACAGGTCTTACACTGATACACAACAAGTTGAC
Found at i:74578130 original size:17 final size:18
Alignment explanation
Indices: 74578108--74578142 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
74578098 AATCTGGGCT
74578108 TGTGGG-CCACACAGGCA
1 TGTGGGCCCACACAGGCA
74578125 TGTGGGCCCACACAGGCA
1 TGTGGGCCCACACAGGCA
74578143 AACTATATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.23, C:0.31, G:0.34, T:0.11
Consensus pattern (18 bp):
TGTGGGCCCACACAGGCA
Found at i:74580122 original size:11 final size:11
Alignment explanation
Indices: 74580106--74580157 Score: 50
Period size: 11 Copynumber: 4.4 Consensus size: 11
74580096 ATAGTATTTT
74580106 TATTAATTTAA
1 TATTAATTTAA
**
74580117 TATTAAAGTAA
1 TATTAATTTAA
74580128 TTATCTTAATATTAA
1 -TA--TTAAT-TTAA
74580143 TATTAATTTAA
1 TATTAATTTAA
74580154 TATT
1 TATT
74580158 TATCTTATAG
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 17 0.52
12 7 0.21
14 6 0.18
15 3 0.09
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (11 bp):
TATTAATTTAA
Found at i:74585254 original size:40 final size:39
Alignment explanation
Indices: 74585204--74585463 Score: 256
Period size: 40 Copynumber: 6.4 Consensus size: 39
74585194 TAAATATGTG
* *
74585204 TGGCACTTAGTGTGCGATTCAAGATAGCTTCAGTTATATG
1 TGGCACTTAGTGTGCGATTCAAGATAGCTTC-GCTATATA
*
74585244 TGGCACTTAGTGTGCGATTCAAGATAGCTTCGATTATATA
1 TGGCACTTAGTGTGCGATTCAAGATAGCTTCG-CTATATA
* ** *
74585284 TGGCACTTAATGTGCGATTTGAGATAGCTTCGACTATATG
1 TGGCACTTAGTGTGCGATTCAAGATAGCTTCG-CTATATA
74585324 TGGCACTTAGTGTGCGATTCGAA-ATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTC-AAGATAGCTTC-GCTATATA
* * * * *
74585364 TGGTACTTAGTGTACGAGATCAAGATAACTTCGGCTATGTA
1 TGGCACTTAGTGTGCGA-TTCAAGATAGCTTC-GCTATATA
* * *
74585405 AGGCACTTAGTGTGCGAGATT-ATA-ATAGCTTTGACTATGTA
1 TGGCACTTAGTGTGC--GATTCA-AGATAGCTTCG-CTATATA
74585446 TTGGCACTTAGTGTGCGA
1 -TGGCACTTAGTGTGCGA
74585464 GATATTGGTT
Statistics
Matches: 188, Mismatches: 22, Indels: 20
0.82 0.10 0.09
Matches are distributed among these distances:
39 1 0.01
40 124 0.66
41 45 0.24
42 16 0.09
43 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (39 bp):
TGGCACTTAGTGTGCGATTCAAGATAGCTTCGCTATATA
Found at i:74585444 original size:120 final size:119
Alignment explanation
Indices: 74585202--74585463 Score: 298
Period size: 120 Copynumber: 2.2 Consensus size: 119
74585192 TATAAATATG
* * * *
74585202 TGTGGCACTTAGTGTGCGATTCAAGATAGCTTCAGTTATATGTGGCACTTAGTGTGCGATTCAAG
1 TGTGGCACTTAGTGTGCGATTCAAGATAGCTTCAGCTATATATGGCACTTAGTGTACGAATCAAG
* * *
74585267 ATAGCTTCGATTATATATGGCACTTAATGTGCGATTTGAGATAGCTTCGACTATA
66 ATAACTTCGACTATATAAGGCACTTAATGTGCGATTTGAGATAGCTTCGAC-ATA
* *
74585322 TGTGGCACTTAGTGTGCGATTCGAA-ATAGCTTCGGCTATATATGGTACTTAGTGTACGAGATCA
1 TGTGGCACTTAGTGTGCGATTC-AAGATAGCTTCAGCTATATATGGCACTTAGTGTACGA-ATCA
* * * *
74585386 AGATAACTTCGGCTATGTAAGGCACTTAGTGTGCGAGATTAT-A-ATAGCTTTGAC-TA
64 AGATAACTTCGACTATATAAGGCACTTAATGTGC--GATT-TGAGATAGCTTCGACATA
74585442 TGTATTGGCACTTAGTGTGCGA
1 TG---TGGCACTTAGTGTGCGA
74585464 GATATTGGTT
Statistics
Matches: 121, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
120 55 0.45
121 33 0.27
122 10 0.08
123 22 0.18
124 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (119 bp):
TGTGGCACTTAGTGTGCGATTCAAGATAGCTTCAGCTATATATGGCACTTAGTGTACGAATCAAG
ATAACTTCGACTATATAAGGCACTTAATGTGCGATTTGAGATAGCTTCGACATA
Found at i:74589177 original size:28 final size:29
Alignment explanation
Indices: 74589137--74589192 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
74589127 CCAGGTTTTT
74589137 GGACACGGGCGTGT-CTAGGCCATGTGAG
1 GGACACGGGCGTGTGCTAGGCCATGTGAG
* *
74589165 GGACACGGGCGTGTGCTTGGCCGTGTGA
1 GGACACGGGCGTGTGCTAGGCCATGTGA
74589193 TAACCCCTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 14 0.56
29 11 0.44
ACGTcount: A:0.14, C:0.21, G:0.45, T:0.20
Consensus pattern (29 bp):
GGACACGGGCGTGTGCTAGGCCATGTGAG
Found at i:74590596 original size:47 final size:47
Alignment explanation
Indices: 74590474--74590677 Score: 300
Period size: 47 Copynumber: 4.3 Consensus size: 47
74590464 AGGCCTGGAC
*
74590474 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
74590523 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
74590570 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * * * *
74590617 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
74590664 ATAAATGTGATAAG
1 ATATATGTGATAAG
74590678 TCCCGAAAGG
Statistics
Matches: 142, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
47 97 0.68
49 45 0.32
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:74592423 original size:42 final size:43
Alignment explanation
Indices: 74592310--74592469 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 43
74592300 AGCTCGTACA
* * *
74592310 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGATGTGGTCTTACACGAAATCAAATATCG
*
74592353 ATGCC-ACTGTCCCAGATAG-GGTCTTACACGAAATGAAATAT-G
1 ATGCCAAC-GTCCCAGAT-GTGGTCTTACACGAAATCAAATATCG
* * * * * *
74592395 ATGCCAACGTTCTAGATGTGGTCCTACACATAAATCATAA-GTCA
1 ATGCCAACGTCCCAGATGTGGTCTTACAC-GAAATCA-AATATCG
* *
74592439 ATGCCAACGTCCCAAACGTGGTCTTACACGA
1 ATGCCAACGTCCCAGATGTGGTCTTACACGA
74592470 TAACACATAT
Statistics
Matches: 93, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 24 0.26
43 41 0.44
44 27 0.29
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGATGTGGTCTTACACGAAATCAAATATCG
Found at i:74594154 original size:37 final size:37
Alignment explanation
Indices: 74594104--74594182 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
74594094 TTATTACGAA
* * *
74594104 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
74594141 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
74594178 GTCTT
1 GTCTT
74594183 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:74594379 original size:47 final size:47
Alignment explanation
Indices: 74594301--74594758 Score: 783
Period size: 47 Copynumber: 9.7 Consensus size: 47
74594291 CCCTTCGGGA
* * * * * *
74594301 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
74594348 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74594395 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74594442 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74594489 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74594536 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74594583 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74594630 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74594677 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
74594724 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
74594759 AGAATCCTAA
Statistics
Matches: 393, Mismatches: 17, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
46 1 0.00
47 392 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74603983 original size:44 final size:42
Alignment explanation
Indices: 74603841--74603995 Score: 192
Period size: 43 Copynumber: 3.6 Consensus size: 42
74603831 AGCTCGTACA
* *
74603841 ATGCCAACGTCCCAGACGTGGTCTTATATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGATGTGGTCTTATACGTAAATC-AA-ATCG
*
74603884 ATGCC-ACTGTCCCAGATAG-GGTCTTACACG-AAATCAAATACG
1 ATGCCAAC-GTCCCAGAT-GTGGTCTTATACGTAAATCAAAT-CG
74603926 ATGCCAACGTCCCAGATGTGGTCTTATACGTAAATCATAAGTCG
1 ATGCCAACGTCCCAGATGTGGTCTTATACGTAAATCA-AA-TCG
74603970 ATGCCAACGTCCCAGATGTGGTCTTA
1 ATGCCAACGTCCCAGATGTGGTCTTA
74603996 CACGATAACA
Statistics
Matches: 99, Mismatches: 4, Indels: 17
0.82 0.03 0.14
Matches are distributed among these distances:
41 3 0.03
42 30 0.30
43 34 0.34
44 31 0.31
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26
Consensus pattern (42 bp):
ATGCCAACGTCCCAGATGTGGTCTTATACGTAAATCAAATCG
Found at i:74603993 original size:86 final size:85
Alignment explanation
Indices: 74603841--74604000 Score: 236
Period size: 86 Copynumber: 1.9 Consensus size: 85
74603831 AGCTCGTACA
*
74603841 ATGCCAACGTCCCAGACGTGGTCTTATATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
1 ATGCCAACGTCCCAGACGTGGTCTTATACGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
74603906 CTTACACGAAATCAAATACG
66 CTTACACGAAATCAAATACG
* *
74603926 ATGCCAACGTCCCAGATGTGGTCTTATACGTAAATCATAA-GTCGATGCCAAC-GTCCCAGAT-G
1 ATGCCAACGTCCCAGACGTGGTCTTATACGT-AATCA-AATATCGATGCC-ACTGTCCCAGATAG
74603988 TGGTCTTACACGA
63 -GGTCTTACACGA
74604001 TAACACATAT
Statistics
Matches: 68, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
85 30 0.44
86 34 0.50
87 4 0.06
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACGTGGTCTTATACGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
CTTACACGAAATCAAATACG
Found at i:74607332 original size:42 final size:42
Alignment explanation
Indices: 74607221--74607369 Score: 176
Period size: 43 Copynumber: 3.5 Consensus size: 42
74607211 ATACCAATGT
* * *
74607221 CATATCCCAGATATAGTCTTACATGTAATCTAATATCAATAC
1 CATATCCCAGATATGGTCTTACATGAAATCTCATATCAATAC
* * *
74607263 CAATAGCCCA-ACTATGGTCTTATATGAAATCTCATATCAACAC
1 C-ATATCCCAGA-TATGGTCTTACATGAAATCTCATATCAATAC
** * *
74607306 CATATCTGAGATATGGTCTTACATGAAATCTCATAT-GATGC
1 CATATCCCAGATATGGTCTTACATGAAATCTCATATCAATAC
74607347 CATATCCCAGATATGGTCTTACA
1 CATATCCCAGATATGGTCTTACA
74607370 CGTAGTCTTA
Statistics
Matches: 89, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
41 23 0.26
42 31 0.35
43 35 0.39
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACATGAAATCTCATATCAATAC
Found at i:74610720 original size:17 final size:18
Alignment explanation
Indices: 74610696--74610740 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
74610686 GTGGGGAGGG
74610696 ATAA-TTTATAA-ATTAA
1 ATAATTTTATAATATTAA
*
74610712 ATAATTTTA-AATTTTAA
1 ATAATTTTATAATATTAA
74610729 ATAATCTTTATA
1 ATAAT-TTTATA
74610741 CCCTTTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
16 6 0.25
17 13 0.54
18 4 0.17
19 1 0.04
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
ATAATTTTATAATATTAA
Found at i:74610992 original size:14 final size:14
Alignment explanation
Indices: 74610973--74611011 Score: 55
Period size: 12 Copynumber: 2.9 Consensus size: 14
74610963 CACTTTCTCT
*
74610973 CCACCCTCACCCCC
1 CCACCCCCACCCCC
74610987 CCACCCCCA--CCC
1 CCACCCCCACCCCC
74610999 CCACCCCCACCCC
1 CCACCCCCACCCC
74611012 AACTCCCACG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 12 0.55
14 10 0.45
ACGTcount: A:0.15, C:0.82, G:0.00, T:0.03
Consensus pattern (14 bp):
CCACCCCCACCCCC
Found at i:74610993 original size:6 final size:6
Alignment explanation
Indices: 74610984--74611011 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
74610974 CACCCTCACC
74610984 CCCCCA CCCCCA CCCCCA CCCCCA CCCC
1 CCCCCA CCCCCA CCCCCA CCCCCA CCCC
74611012 AACTCCCACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.86, G:0.00, T:0.00
Consensus pattern (6 bp):
CCCCCA
Found at i:74611019 original size:18 final size:18
Alignment explanation
Indices: 74610984--74611020 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
74610974 CACCCTCACC
*
74610984 CCCCCACCCCCACCCCCA
1 CCCCCACCCCAACCCCCA
*
74611002 CCCCCACCCCAACTCCCA
1 CCCCCACCCCAACCCCCA
74611020 C
1 C
74611021 GTTCTCTCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.19, C:0.78, G:0.00, T:0.03
Consensus pattern (18 bp):
CCCCCACCCCAACCCCCA
Found at i:74615296 original size:13 final size:13
Alignment explanation
Indices: 74615278--74615306 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
74615268 GGATGAAAAA
74615278 TATTTCTATATTT
1 TATTTCTATATTT
74615291 TATTTCTATATTT
1 TATTTCTATATTT
74615304 TAT
1 TAT
74615307 AAAAATTGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (13 bp):
TATTTCTATATTT
Found at i:74615849 original size:10 final size:10
Alignment explanation
Indices: 74615834--74615907 Score: 52
Period size: 10 Copynumber: 7.8 Consensus size: 10
74615824 AAGAAGAAGA
74615834 AGTGAACAGT
1 AGTGAACAGT
*
74615844 AGTGAACAATGA
1 AGTGAAC-A-GT
* *
74615856 ACTAAACAGT
1 AGTGAACAGT
74615866 AGTGAACA--
1 AGTGAACAGT
74615874 A-TGAACAGT
1 AGTGAACAGT
*
74615883 GGTGAACA--
1 AGTGAACAGT
74615891 A-TGAACAGT
1 AGTGAACAGT
74615900 AGTGAACA
1 AGTGAACA
74615908 ATGAACTAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 16
0.67 0.11 0.22
Matches are distributed among these distances:
7 12 0.25
8 1 0.02
9 1 0.02
10 26 0.54
11 2 0.04
12 6 0.12
ACGTcount: A:0.46, C:0.12, G:0.24, T:0.18
Consensus pattern (10 bp):
AGTGAACAGT
Found at i:74615882 original size:17 final size:17
Alignment explanation
Indices: 74615836--74615913 Score: 102
Period size: 17 Copynumber: 4.3 Consensus size: 17
74615826 GAAGAAGAAG
74615836 TGAACAGTAGTGAACAA
1 TGAACAGTAGTGAACAA
74615853 TGAACTAAACAGTAGTGAACAA
1 TG-----AACAGTAGTGAACAA
*
74615875 TGAACAGTGGTGAACAA
1 TGAACAGTAGTGAACAA
74615892 TGAACAGTAGTGAACAA
1 TGAACAGTAGTGAACAA
74615909 TGAAC
1 TGAAC
74615914 TAAACAGTAG
Statistics
Matches: 54, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
17 37 0.69
22 17 0.31
ACGTcount: A:0.46, C:0.13, G:0.23, T:0.18
Consensus pattern (17 bp):
TGAACAGTAGTGAACAA
Found at i:74616815 original size:3 final size:3
Alignment explanation
Indices: 74616809--74616858 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
74616799 TTAATCCTCC
74616809 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
74616857 TA
1 TA
74616859 CTTTTTTAAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:74618095 original size:29 final size:29
Alignment explanation
Indices: 74618053--74618108 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
74618043 GGCGCATCGA
74618053 GGGTGCTAACCCTTCCTCGTGCGTAACAT
1 GGGTGCTAACCCTTCCTCGTGCGTAACAT
74618082 GGGTGCTAACCCTTCCTCGTGCGTAAC
1 GGGTGCTAACCCTTCCTCGTGCGTAAC
74618109 CGACTCCCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.16, C:0.32, G:0.25, T:0.27
Consensus pattern (29 bp):
GGGTGCTAACCCTTCCTCGTGCGTAACAT
Found at i:74618119 original size:29 final size:29
Alignment explanation
Indices: 74618058--74618120 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
74618048 ATCGAGGGTG
* ** *
74618058 CTAACCCTTCCTCGTGCGTAACATGGGTG
1 CTAACCCTTCCTCGTGCGTAACACGACTC
74618087 CTAACCCTTCCTCGTGCGTAAC-CGACTCC
1 CTAACCCTTCCTCGTGCGTAACACGACT-C
74618116 CTAAC
1 CTAAC
74618121 TCGTTTTCTG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.19, C:0.38, G:0.17, T:0.25
Consensus pattern (29 bp):
CTAACCCTTCCTCGTGCGTAACACGACTC
Found at i:74624119 original size:44 final size:45
Alignment explanation
Indices: 74624049--74624156 Score: 123
Period size: 44 Copynumber: 2.4 Consensus size: 45
74624039 CCTATCACCT
* * *** *
74624049 TAAGCAGTAGTGGAGTAG-GCTGAAGATTGTAGATCTTGTCTCCC
1 TAAGCAGTAGTGGAGTAGATCTAAAGATAACAAATCTTGTCTCCC
74624093 T-AGACAGTAGTGGAGTAGATC-AAAGATAACAAATCTTGTCTCCC
1 TAAG-CAGTAGTGGAGTAGATCTAAAGATAACAAATCTTGTCTCCC
*
74624137 TAAGTAGTAGTGGAGTAGAT
1 TAAGCAGTAGTGGAGTAGAT
74624157 TTAAGTCACC
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
43 2 0.04
44 49 0.91
45 3 0.06
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (45 bp):
TAAGCAGTAGTGGAGTAGATCTAAAGATAACAAATCTTGTCTCCC
Found at i:74624292 original size:44 final size:44
Alignment explanation
Indices: 74624243--74624381 Score: 138
Period size: 44 Copynumber: 3.2 Consensus size: 44
74624233 GCGGAGTAGA
*
74624243 TCGAAGCTACAAATTTCTTCTCCTTGAAATGGCACTAGAGCGGC
1 TCGAAGCTACAAATTTCTTCTCCTTGAAATGGCACTAGAGCAGC
* ** * * *
74624287 TCGAAGCTAC-AA-TTCGTATCTCCTTGAAGTTTCAGTAGAGTAGA
1 TCGAAGCTACAAATTTC-T-TCTCCTTGAAATGGCACTAGAGCAGC
* * * *
74624331 TCAAAGCTACAAATCTCTTCTCCCTGAAATGGCACTAGAGCTGC
1 TCGAAGCTACAAATTTCTTCTCCTTGAAATGGCACTAGAGCAGC
*
74624375 TTGAAGC
1 TCGAAGC
74624382 CACAGTTCCT
Statistics
Matches: 72, Mismatches: 19, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
42 3 0.04
43 3 0.04
44 61 0.85
45 3 0.04
46 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (44 bp):
TCGAAGCTACAAATTTCTTCTCCTTGAAATGGCACTAGAGCAGC
Found at i:74625306 original size:44 final size:44
Alignment explanation
Indices: 74624992--74625306 Score: 121
Period size: 44 Copynumber: 7.2 Consensus size: 44
74624982 TTGGAGCGGC
* *
74624992 TCGAAGCCACAGTTCGTATCTCCTTGAAGTTCCAGCGGAGTAGA
1 TCGAAGCCTCAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGA
* ** * * ** ** *
74625036 TC-TAGGTTACAAATCTC-T-TCTCCCTGAAATGACATTGGAGTAGC
1 TCGAAGCCT-C-AAT-TCGTATCTCCTTGAAGTTCCAGCGGAGTAGA
* * *
74625080 TCGAAGCCACAGTTCGTATCTCCTTGAAGTTCCAGCGGAGAAGA
1 TCGAAGCCTCAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGA
* * * * ** ** ** *
74625124 TTG-AGGCTACAAATCTC-T-TCTCCCTGAAATAGCATTGGAGCGGC
1 TCGAAGCCT-C-AAT-TCGTATCTCCTTGAAGTTCCAGCGGAGTAGA
* * * *
74625168 TCGAAGCCACAGTTTGTATCTCCTTGAAGTTCCAACGGAGTAGA
1 TCGAAGCCTCAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGA
* * * ** **
74625212 TCG-AGGCTACAAATCTC-T-TCTCCCTGAAATGGCATTGGA--AGGA
1 TCGAAGCCT-C-AAT-TCGTATCTCCTTGAAGTTCCAGCGGAGTA-GA
74625255 CTCGAAGCCTCAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGA
1 -TCGAAGCCTCAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGA
74625300 TCGAAGC
1 TCGAAGC
74625307 TACAAATCTC
Statistics
Matches: 180, Mismatches: 69, Indels: 44
0.61 0.24 0.15
Matches are distributed among these distances:
42 6 0.03
43 20 0.11
44 128 0.71
45 20 0.11
46 6 0.03
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (44 bp):
TCGAAGCCTCAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGA
Found at i:74625350 original size:88 final size:88
Alignment explanation
Indices: 74624215--74625329 Score: 1539
Period size: 88 Copynumber: 12.7 Consensus size: 88
74624205 CAATAATTCT
* * * * * * * *
74624215 TATCTTCTTAAAGTTTCAGCGGAGTAGATCGAAGCTACAAATTTCTTCTCCTTGAAATGGCACTA
1 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
* *
74624280 GAGCGGCTCGAAGCTACAATTCG
66 GAGCGGCTCGAAGCCACAGTTCG
* ** * * * *
74624303 TATCTCCTTGAAGTTTCAGTAGAGTAGATCAAAGCTACAAATCTCTTCTCCCTGAAATGGCACTA
1 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
* * *
74624368 GAGCTGCTTGAAGCCACAGTTCC
66 GAGCGGCTCGAAGCCACAGTTCG
* *
74624391 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTAAAATGGTATTG
1 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
74624456 GAGCGGCTCGAAGCCACAGTTCG
66 GAGCGGCTCGAAGCCACAGTTCG
* * * **
74624479 TATTTCCTTAAAGTTTCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGATATTG
1 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
* *
74624544 GAGCGGCTCAAAGCCACAGTTTG
66 GAGCGGCTCGAAGCCACAGTTCG
* * * * *
74624567 TATCTTCTTGAAGATCCAACGGAGTAGATTGAGGCTACAAATCTCTTCTCCCTGAAATGGGATTG
1 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
* *
74624632 GAGTGGCTCGAAGCCACAGTTTG
66 GAGCGGCTCGAAGCCACAGTTCG
* *
74624655 TATCTCCTTGAAGTTCCAGCAGAGTAGATCGAGGCCACAAATCTCTTCTCCCTGAAATGGCATTG
1 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
** * * *
74624720 GAGTAGTTCGAAGCCACAATTCA
66 GAGCGGCTCGAAGCCACAGTTCG
* * * * * *
74624743 TATCTCCTTAAAGTTCCAACGGAGAAGATCGAGGCTAAAAATCTCTTCTCCTTAAAATGGCATTG
1 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
* *
74624808 GAGCGGCTTGAAGCCATAGTTCG
66 GAGCGGCTCGAAGCCACAGTTCG
* * *
74624831 TATCTCCTTGAAGTTCCAGCGGAGTAGATCAAGGTTACAAATCTCTTCTCCCGGAAATGGCATTG
1 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
* *
74624896 GAGTGGCTCGAAGCCACATTTCG
66 GAGCGGCTCGAAGCCACAGTTCG
* * *
74624919 TATCTCCTTGAAGTTCCAGCTTGAGTAGATCTAGGCTACAAATCTCTTCTCCCTAAAATGGCATT
1 TATCTCCTTGAAGTTCCAGC-GGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATT
74624984 GGAGCGGCTCGAAGCCACAGTTCG
65 GGAGCGGCTCGAAGCCACAGTTCG
* * *
74625008 TATCTCCTTGAAGTTCCAGCGGAGTAGATCTAGGTTACAAATCTCTTCTCCCTGAAATGACATTG
1 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
**
74625073 GAGTAGCTCGAAGCCACAGTTCG
66 GAGCGGCTCGAAGCCACAGTTCG
* * *
74625096 TATCTCCTTGAAGTTCCAGCGGAGAAGATTGAGGCTACAAATCTCTTCTCCCTGAAATAGCATTG
1 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
*
74625161 GAGCGGCTCGAAGCCACAGTTTG
66 GAGCGGCTCGAAGCCACAGTTCG
*
74625184 TATCTCCTTGAAGTTCCAACGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
1 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
* * *
74625249 GAAG-GACTCGAAGCCTCAATTCG
66 G-AGCGGCTCGAAGCCACAGTTCG
* *
74625272 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTTCCTGAAAT
1 TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAAT
74625330 TACAATGGAA
Statistics
Matches: 910, Mismatches: 115, Indels: 4
0.88 0.11 0.00
Matches are distributed among these distances:
88 827 0.91
89 83 0.09
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (88 bp):
TATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTG
GAGCGGCTCGAAGCCACAGTTCG
Found at i:74625460 original size:44 final size:44
Alignment explanation
Indices: 74625407--74625944 Score: 328
Period size: 44 Copynumber: 11.7 Consensus size: 44
74625397 CATAGCAAAC
* * *
74625407 CTTATCTCCCCGAAGTAGCAGTGTAGCAGGTTGAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
* *** *
74625451 CTTATCTCCCTGAAGTTGCAGTGGGGCAAACTGAAGGTAGCGAA-T
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-C-AAGT
* * * *
74625496 CTTATCTCCCTAAAGTTGCAATGGGGCAGGTTGAAGCTACAAATCACAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-T-----T-ACAAGT
* *
74625547 CTTATCTCCCTAAAGTTTCAGTGGAGCAGGTTGAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
* * ** *
74625591 CTTATCTCCCTGAAGTTGCAATGGGGCAGACTGAAGATAGCGAA-T
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-C-AAGT
* * ** **
74625636 CTTATCTCTCTGAAGTTGCAGTGGGGCAAATTGAAGCTACAAATCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-T-----T-ACAAGT
* * *
74625687 CTTATCTCCCTGAAGTTGCAGTCGAGCAGGATAAAGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
* * * * ** * *
74625731 CTTATCTTCTTAAAGTTACAGTGGAGCAAATTGAAGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGT
* * * * * *
74625776 -TTGATCTCCCTGAAGTTGCAATGGGGCAGATCGAAGCTACAAAT
1 CTT-ATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
* * *
74625820 CACAAACTTTATCTCCCTGAAGTTGCAGTGGGGCAAGTTGAAGTTAAAAGT
1 ------C-TTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
* ** *
74625871 CTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGC-AGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAG-T
* *
74625916 CTTATCTCCTTGAAGTTGCAATGGAGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAG
74625945 ATCAAGCTAC
Statistics
Matches: 385, Mismatches: 77, Indels: 63
0.73 0.15 0.12
Matches are distributed among these distances:
44 142 0.37
45 128 0.33
46 4 0.01
50 6 0.02
51 101 0.26
52 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGT
Found at i:74625582 original size:96 final size:95
Alignment explanation
Indices: 74625445--74625888 Score: 283
Period size: 96 Copynumber: 4.7 Consensus size: 95
74625435 GGTTGAAGTT
* * *
74625445 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGGGCAAACTGAAGGTAGCGAA-TCTTATCTCCCTAA
1 ACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAACTGAAGGTA-C-AAGTCTTATCTCCCTAA
74625509 AGTTGCAATGGGGCAGGTTGAAGCTACAAATC
64 AGTTGCAATGGGGCAGGTTGAAGCTACAAATC
* *** * *
74625541 ACAAATCTTATCTCCCTAAAGTTTCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAG
1 ACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAACTGAAGGTACAAGTCTTATCTCCCTAAAG
**
74625606 TTGCAATGGGGCAGACTGAAG------AT-
66 TTGCAATGGGGCAGGTTGAAGCTACAAATC
* * * * * * *
74625629 AGCGAATCTTATCTCTCTGAAGTTGCAGTGGGGCAAATTGAAGCTACAAATCACAAACCTTATCT
1 A-CAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAACTGAAGGTACAAGT-------CTTATCT
* * * * * *
74625694 CCCTGAAGTTGCAGTCGAGCA-G--G-A--TA-AAGTT
58 CCCTAAAGTTGCAATGGGGCAGGTTGAAGCTACAAATC
* * * * * * * *
74625725 ACAAGTCTTATCTTCTTAAAGTTACAGTGGAGCAAATTGAAGATAGCAAAT-TTGATCTCCCTGA
1 ACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAACTGAAGGTA-CAAGTCTT-ATCTCCCTAA
* *
74625789 AGTTGCAATGGGGCAGATCGAAGCTACAAATC
64 AGTTGCAATGGGGCAGGTTGAAGCTACAAATC
* * ** * * *
74625821 ACAAA-CTTTATCTCCCTGAAGTTGCAGTGGGGCAAGTTGAAGTTAAAAGTCTTATCTCCCTGAA
1 ACAAATC-TTATCTCCCTAAAGTTGCAGTGGAGCAAACTGAAGGTACAAGTCTTATCTCCCTAAA
74625885 GTTG
65 GTTG
74625889 TAGTGGAGCA
Statistics
Matches: 273, Mismatches: 50, Indels: 51
0.73 0.13 0.14
Matches are distributed among these distances:
88 3 0.01
89 64 0.23
92 2 0.01
93 2 0.01
94 2 0.01
95 92 0.34
96 108 0.40
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (95 bp):
ACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAACTGAAGGTACAAGTCTTATCTCCCTAAAG
TTGCAATGGGGCAGGTTGAAGCTACAAATC
Found at i:74625661 original size:140 final size:140
Alignment explanation
Indices: 74625402--74625956 Score: 756
Period size: 140 Copynumber: 4.0 Consensus size: 140
74625392 CAGATCATAG
* * *
74625402 CAAACCTTATCTCCCCGAAGTAGCAGTGTAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGT
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGT
* * * *
74625467 TGCAGTGGGGCAAACTGAAGGTAGCGAATCTTATCTCCCTAAAGTTGCAATGGGGCAGGTTGAAG
66 TGCAGTGGAGCAAACTGAAGATAGCGAATCTTATCTCCCTGAAGTTGCAATGGGGCAGATTGAAG
74625532 CTACAAATCA
131 CTACAAATCA
* * *
74625542 CAAATCTTATCTCCCTAAAGTTTCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGT
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGT
* * * * * *
74625607 TGCAATGGGGCAGACTGAAGATAGCGAATCTTATCTCTCTGAAGTTGCAGTGGGGCAAATTGAAG
66 TGCAGTGGAGCAAACTGAAGATAGCGAATCTTATCTCCCTGAAGTTGCAATGGGGCAGATTGAAG
74625672 CTACAAATCA
131 CTACAAATCA
* * * * * *
74625682 CAAACCTTATCTCCCTGAAGTTGCAGTCGAGCAGGATAAAGTTACAAGTCTTATCTTCTTAAAGT
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGT
* * * *
74625747 TACAGTGGAGCAAATTGAAGATAGCAAAT-TTGATCTCCCTGAAGTTGCAATGGGGCAGATCGAA
66 TGCAGTGGAGCAAACTGAAGATAGCGAATCTT-ATCTCCCTGAAGTTGCAATGGGGCAGATTGAA
74625811 GCTACAAATCA
130 GCTACAAATCA
* * * *
74625822 CAAACTTTATCTCCCTGAAGTTGCAGTGGGGCAAGTTGAAGTTAAAAGTCTTATCTCCCTGAAGT
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGT
* * * * *
74625887 TGTAGTGGAGCAGACTGAAGATAGC-AGATCTTATCTCCTTGAAGTTGCAATGGAGCAGA-TCAA
66 TGCAGTGGAGCAAACTGAAGATAGCGA-ATCTTATCTCCCTGAAGTTGCAATGGGGCAGATTGAA
74625950 GCTACAA
130 GCTACAA
74625957 TTGCAGAAGA
Statistics
Matches: 361, Mismatches: 51, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
139 12 0.03
140 347 0.96
141 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.27
Consensus pattern (140 bp):
CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGT
TGCAGTGGAGCAAACTGAAGATAGCGAATCTTATCTCCCTGAAGTTGCAATGGGGCAGATTGAAG
CTACAAATCA
Found at i:74627635 original size:11 final size:10
Alignment explanation
Indices: 74627617--74627650 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
74627607 TTAATTCTTC
74627617 TTTTTTATTT
1 TTTTTTATTT
74627627 TTATTTTATTT
1 TT-TTTTATTT
74627638 TCTTTTTATTT
1 T-TTTTTATTT
74627649 TT
1 TT
74627651 GCTGTTACTC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 3 0.14
11 18 0.82
12 1 0.05
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTATTT
Found at i:74638717 original size:56 final size:56
Alignment explanation
Indices: 74638631--74638742 Score: 197
Period size: 56 Copynumber: 2.0 Consensus size: 56
74638621 ACTCATAAAG
* *
74638631 ATTGGAAGACAGTTGGAGAGTCAACATACTATCAGCTAGTCCAGCTTTGGTATATA
1 ATTGGAAGACAGTTGGAGAGTCAACATACTATCAACTAGTCCAGCTTTGGCATATA
*
74638687 ATTGGAAGACGGTTGGAGAGTCAACATACTATCAACTAGTCCAGCTTTGGCATATA
1 ATTGGAAGACAGTTGGAGAGTCAACATACTATCAACTAGTCCAGCTTTGGCATATA
74638743 GGCACTTTTA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (56 bp):
ATTGGAAGACAGTTGGAGAGTCAACATACTATCAACTAGTCCAGCTTTGGCATATA
Found at i:74652713 original size:16 final size:15
Alignment explanation
Indices: 74652689--74652756 Score: 57
Period size: 16 Copynumber: 4.3 Consensus size: 15
74652679 AACATCTAAA
*
74652689 GTTTGGAATAACTCTT
1 GTTTAGAATAA-TCTT
74652705 GTTTAGAATAAT-TGT
1 GTTTAGAATAATCT-T
*
74652720 GTTTCAAGAATAATTTT
1 GTTT--AGAATAATCTT
*
74652737 GTTTAGAACAACTCTT
1 GTTTAGAATAA-TCTT
74652753 GTTT
1 GTTT
74652757 GTAATAATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
14 1 0.02
15 12 0.27
16 17 0.39
17 13 0.30
18 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.46
Consensus pattern (15 bp):
GTTTAGAATAATCTT
Found at i:74655035 original size:26 final size:26
Alignment explanation
Indices: 74654995--74655050 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
74654985 ATATAATAAT
74654995 AATATAATAAATAATACA-AATTTAAA
1 AATATAATAAATAATA-ATAATTTAAA
** *
74655021 AATATAATACTTAATAATAATTTCAA
1 AATATAATAAATAATAATAATTTAAA
74655047 AATA
1 AATA
74655051 GCATTTACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (26 bp):
AATATAATAAATAATAATAATTTAAA
Done.