Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 228 of 325
Found at i:74657099 original size:220 final size:220
Alignment explanation
Indices: 74656806--74657791 Score: 1542
Period size: 220 Copynumber: 4.5 Consensus size: 220
74656796 TCACAATACA
** * ** * * * *
74656806 GAGATGCCAAATCTGCAATCTTCGATCTACTCTCTGACAATATAGAGACGCCAAATTATCTTAGA
1 GAGATGCCAAATCTG-TTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGA
* * * * * * * * *
74656871 TTTGCTTCAACATAAAC-GCGTGAAAGCCAAATCTGCTATGTCTTTGATTTGCTCCTTGTAAACA
65 TCTGCTTCAGCATAAACATC-TGAAGGTCAGATCTGCTATGCCTTCGATTTGTTCCTTGTAAACA
* *
74656935 CGAGGATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATG
129 CAAAGATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATG
74657000 TCTTCGATCTGCTCTCCGTCGAATATG
194 TCTTCGATCTGCTCTCCGTCGAATATG
*
74657027 GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAGTCATCTTGGAT
1 GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
*
74657092 CTGCTTCAGCATAAACATCTGAAGGTCAGATCTGCTATGCCTTCGATTTGTTCCTTGTAAACGCA
66 CTGCTTCAGCATAAACATCTGAAGGTCAGATCTGCTATGCCTTCGATTTGTTCCTTGTAAACACA
* *
74657157 AAGATGCCAAATCATCTTGGATCCGCTTTGATGTGAAAACATCCAAAGGTTAGATCTACTATGTC
131 AAGATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTC
74657222 TTCGATCTGCTCTCCGTCGAATATG
196 TTCGATCTGCTCTCCGTCGAATATG
74657247 GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
1 GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
**
74657312 CTGCTTCAGTGTAAACATCTGAAGGTCAGATCTGCTATGCCTTCGATTTGTTCCTTGTAAACACA
66 CTGCTTCAGCATAAACATCTGAAGGTCAGATCTGCTATGCCTTCGATTTGTTCCTTGTAAACACA
* *
74657377 AAGATTCCAAATCGTCTTGGATCTGCTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTC
131 AAGATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTC
*
74657442 TTCAATCTGCTCTCCGTCGAATATG
196 TTCGATCTGCTCTCCGTCGAATATG
* * * *
74657467 GAGATGCCAAATTTGTTTCTTCGATTTGTTCTCTGACAATATAGAGATGTCAAATCATCTTAGAT
1 GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
* ** * *
74657532 CTGCTTCTGTGTAAACATCTGAAGGTCAGATCTGCTATGCCTTCAATTTGTTCCTTCTAAACACA
66 CTGCTTCAGCATAAACATCTGAAGGTCAGATCTGCTATGCCTTCGATTTGTTCCTTGTAAACACA
74657597 AAGATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTC
131 AAGATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTC
*
74657662 TTCGATCTGCTCTCCATCGAATATG
196 TTCGATCTGCTCTCCGTCGAATATG
* *
74657687 GAGATACCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAACTCATCTTGGAT
1 GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
* ** *
74657752 TTGCTTCAGTGTAAACATCTGAAGGCCAGATCTGCTATGC
66 CTGCTTCAGCATAAACATCTGAAGGTCAGATCTGCTATGC
74657792 TTTAGCCTAT
Statistics
Matches: 711, Mismatches: 53, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
220 695 0.98
221 16 0.02
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (220 bp):
GAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGAT
CTGCTTCAGCATAAACATCTGAAGGTCAGATCTGCTATGCCTTCGATTTGTTCCTTGTAAACACA
AAGATGCCAAATCATCTTGGATCTGCTTTGATGTGAAAACATCCAAAGGTTAGATCTGCTATGTC
TTCGATCTGCTCTCCGTCGAATATG
Found at i:74657388 original size:87 final size:89
Alignment explanation
Indices: 74657265--74657444 Score: 224
Period size: 87 Copynumber: 2.0 Consensus size: 89
74657255 AAATCTGTTT
* * *
74657265 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGC-TTCA-GTGTAAAC
1 CTTCGATTTGTTCTCTGACAACACAAAGATGCCAAATCATCTTGGATCTGCTTTCATGTGAAAAC
**
74657328 ATCTGAAGGTCAGATCTGCTATGC
66 ATCCAAAGGTCAGATCTGCTATGC
* * *
74657352 CTTCGATTTGTTC-CTTGTA-AACACAAAGATTCCAAATCGTCTTGGATCTGCTTTGATGTGAAA
1 CTTCGATTTGTTCTC-TG-ACAACACAAAGATGCCAAATCATCTTGGATCTGCTTTCATGTGAAA
* *
74657415 ACATCCAAAGGTTAGATCTGCTATGT
64 ACATCCAAAGGTCAGATCTGCTATGC
74657441 CTTC
1 CTTC
74657445 AATCTGCTCT
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
86 1 0.01
87 43 0.54
88 4 0.05
89 31 0.39
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (89 bp):
CTTCGATTTGTTCTCTGACAACACAAAGATGCCAAATCATCTTGGATCTGCTTTCATGTGAAAAC
ATCCAAAGGTCAGATCTGCTATGC
Found at i:74665846 original size:14 final size:16
Alignment explanation
Indices: 74665817--74665848 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
74665807 GATGCGATGT
74665817 AATGCTATGAGATGCA
1 AATGCTATGAGATGCA
74665833 AATGC-ATG-GATGCA
1 AATGCTATGAGATGCA
74665847 AA
1 AA
74665849 AAGAACATCG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 3 0.19
16 5 0.31
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.22
Consensus pattern (16 bp):
AATGCTATGAGATGCA
Found at i:74681939 original size:48 final size:47
Alignment explanation
Indices: 74681881--74682050 Score: 196
Period size: 48 Copynumber: 3.5 Consensus size: 47
74681871 CATGTCTCAA
* * * * *
74681881 ACATGGTCTTACACGAAATCACATATCGATGCCAATGTCATATCCCAG
1 ACATGGTCTTACA-GAGATCTCATATCGATGCCAATGCCATGTCCTAG
* * * *
74681929 ATATGGTCTTACATGGGATCTCATATCAATGCCAATGCCATGTCCTGG
1 ACATGGTCTTACA-GAGATCTCATATCGATGCCAATGCCATGTCCTAG
* *
74681977 ACATGATCTTACATAGGATCTCATATCGATGCCAATGCCATGTCCTAG
1 ACATGGTCTTACAGA-GATCTCATATCGATGCCAATGCCATGTCCTAG
*
74682025 ACATGGTCTTACATGGGATCTCATAT
1 ACATGGTCTTACA-GAGATCTCATAT
74682051 AACCCTAATG
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
48 101 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (47 bp):
ACATGGTCTTACAGAGATCTCATATCGATGCCAATGCCATGTCCTAG
Found at i:74683825 original size:30 final size:30
Alignment explanation
Indices: 74683789--74683848 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
74683779 ACAATACACG
74683789 GTGAGTTTTAATTTTGTGCATGAAAATTTA
1 GTGAGTTTTAATTTTGTGCATGAAAATTTA
74683819 GTGAGTTTTAATTTTGTGCATGAAAATTTA
1 GTGAGTTTTAATTTTGTGCATGAAAATTTA
74683849 CTTCTTCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (30 bp):
GTGAGTTTTAATTTTGTGCATGAAAATTTA
Found at i:74687222 original size:31 final size:32
Alignment explanation
Indices: 74687141--74687212 Score: 103
Period size: 31 Copynumber: 2.3 Consensus size: 32
74687131 AAAAGTTACA
* **
74687141 ATTT-AGTTACTAAATTATTCGAAAGTTTTTT
1 ATTTAAGTTACCAAATTATTTAAAAGTTTTTT
74687172 ATTTAAGTTACCAAATTATTTAAAAG-TTTTT
1 ATTTAAGTTACCAAATTATTTAAAAGTTTTTT
74687203 ATTTAAGTTA
1 ATTTAAGTTA
74687213 TTGAGTTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 19 0.51
32 18 0.49
ACGTcount: A:0.36, C:0.06, G:0.08, T:0.50
Consensus pattern (32 bp):
ATTTAAGTTACCAAATTATTTAAAAGTTTTTT
Found at i:74687936 original size:9 final size:9
Alignment explanation
Indices: 74687922--74687954 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
74687912 GTTAAACGAA
74687922 TCGAGTTAT
1 TCGAGTTAT
*
74687931 TCGAGTTAA
1 TCGAGTTAT
74687940 TCGAGTTAT
1 TCGAGTTAT
74687949 TCGAGT
1 TCGAGT
74687955 CAACTCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:74687943 original size:18 final size:18
Alignment explanation
Indices: 74687920--74687954 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
74687910 GAGTTAAACG
74687920 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
74687938 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
74687955 CAACTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:74692883 original size:2 final size:2
Alignment explanation
Indices: 74692830--74692866 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
74692820 GAGAAGAAAT
74692830 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
74692867 AAACACAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:74695065 original size:15 final size:15
Alignment explanation
Indices: 74695041--74695074 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
74695031 TTAATGACTT
*
74695041 CTTAGGGTTGTTAGG
1 CTTAGAGTTGTTAGG
74695056 CTTAGAGTTGTTAGG
1 CTTAGAGTTGTTAGG
74695071 CTTA
1 CTTA
74695075 AGGTTTAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.18, C:0.09, G:0.32, T:0.41
Consensus pattern (15 bp):
CTTAGAGTTGTTAGG
Found at i:74700726 original size:46 final size:45
Alignment explanation
Indices: 74700657--74700830 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
74700647 GTAACCCGCC
*
74700657 CCTAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
74700702 CCGTAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
74700752 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
74700795 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
74700831 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 4 0.04
46 58 0.55
47 26 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:74700778 original size:93 final size:93
Alignment explanation
Indices: 74700664--74700834 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
74700654 GCCCCTAAGT
* * * *
74700664 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCGTAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
74700729 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
74700757 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
74700822 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74700835 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74709557 original size:34 final size:34
Alignment explanation
Indices: 74709493--74709590 Score: 126
Period size: 34 Copynumber: 2.9 Consensus size: 34
74709483 GCGAATACAT
* *
74709493 TCTGGGCCTAAGCCCATATT-AGTAATAGTAGCAG
1 TCTGGGCCTTAGCCCAT-TTCAGTAACAGTAGCAG
* * *
74709527 TCTGGGCCTTAGTCCATTTCAATAACAGTAGCGG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
*
74709561 TCTGGGCTTTAGCCCATTTCAGTAACAGTA
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTA
74709591 ATCAGTGCAG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
33 2 0.04
34 53 0.96
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (34 bp):
TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
Found at i:74709603 original size:18 final size:18
Alignment explanation
Indices: 74709580--74709635 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
74709570 TAGCCCATTT
74709580 CAGTAACAGTAATCAGTG
1 CAGTAACAGTAATCAGTG
* * *
74709598 CAGTAACCA-TGATTAATG
1 CAGTAA-CAGTAATCAGTG
* *
74709616 CAGTAACAGCAAACAGTG
1 CAGTAACAGTAATCAGTG
74709634 CA
1 CA
74709636 ATATGCAAGC
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
17 2 0.07
18 24 0.86
19 2 0.07
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:74710034 original size:27 final size:28
Alignment explanation
Indices: 74709956--74710093 Score: 151
Period size: 27 Copynumber: 5.1 Consensus size: 28
74709946 TAGAATACAG
* * * *
74709956 GGGTATTACAATCATTTTATCCTACA-A
1 GGGTATTTCAGTCATTTTACCCTATAGA
*
74709983 GGGTATTTCAGTGATTTTACCCTATAG-
1 GGGTATTTCAGTCATTTTACCCTATAGA
* *
74710010 GGGAATTTCTGTCATTTTACCCTAT-GA
1 GGGTATTTCAGTCATTTTACCCTATAGA
* *
74710037 GGGTATTTCGGTTATTTTACCCTAT-GA
1 GGGTATTTCAGTCATTTTACCCTATAGA
*
74710064 GGGTATTTCAGTTATTTTACCCTATA-A
1 GGGTATTTCAGTCATTTTACCCTATAGA
74710091 GGG
1 GGG
74710094 CAAAATAGCC
Statistics
Matches: 96, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.01
27 95 0.99
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.41
Consensus pattern (28 bp):
GGGTATTTCAGTCATTTTACCCTATAGA
Found at i:74730777 original size:12 final size:12
Alignment explanation
Indices: 74730760--74730801 Score: 84
Period size: 12 Copynumber: 3.5 Consensus size: 12
74730750 CGGGTGTGTG
74730760 TCTACGTCAGAA
1 TCTACGTCAGAA
74730772 TCTACGTCAGAA
1 TCTACGTCAGAA
74730784 TCTACGTCAGAA
1 TCTACGTCAGAA
74730796 TCTACG
1 TCTACG
74730802 ATCGTGTGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (12 bp):
TCTACGTCAGAA
Found at i:74737500 original size:14 final size:15
Alignment explanation
Indices: 74737483--74737511 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
74737473 AATACATTTT
74737483 CAAAAATGAT-AACA
1 CAAAAATGATCAACA
74737497 CAAAAATGATCAACA
1 CAAAAATGATCAACA
74737512 TTCCATACGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.62, C:0.17, G:0.07, T:0.14
Consensus pattern (15 bp):
CAAAAATGATCAACA
Found at i:74743941 original size:19 final size:20
Alignment explanation
Indices: 74743917--74743954 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74743907 TAATTAGATT
74743917 TTAATTAA-GTAAATTTAGC
1 TTAATTAAGGTAAATTTAGC
*
74743936 TTAATTAAGGTTAATTTAG
1 TTAATTAAGGTAAATTTAG
74743955 TGAAAGGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (20 bp):
TTAATTAAGGTAAATTTAGC
Found at i:74744149 original size:17 final size:18
Alignment explanation
Indices: 74744121--74744160 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
74744111 ACTTACTTAT
74744121 TATATAAGTAAATAATAA
1 TATATAAGTAAATAATAA
* *
74744139 TATAT-AGTAAATTATAT
1 TATATAAGTAAATAATAA
74744156 TATAT
1 TATAT
74744161 TATCTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
TATATAAGTAAATAATAA
Found at i:74745086 original size:20 final size:20
Alignment explanation
Indices: 74745061--74745108 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
74745051 ATTCCGACTG
*
74745061 TGTGTCGATGAGACACTATA
1 TGTGTCGAAGAGACACTATA
74745081 TGTGTCGAAGAGACACTATA
1 TGTGTCGAAGAGACACTATA
74745101 TGTGTCGA
1 TGTGTCGA
74745109 CTACTATTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (20 bp):
TGTGTCGAAGAGACACTATA
Found at i:74749290 original size:48 final size:48
Alignment explanation
Indices: 74749232--74749508 Score: 299
Period size: 48 Copynumber: 5.8 Consensus size: 48
74749222 AAGAGGGTGA
* * * *
74749232 ATTGCTGATGCCATG-CTCCAAACATGGTCTTACACTAGCTCTCGTCTC
1 ATTGCAGATGCCATGTC-CCAAACATGGTCTTACACTGGCTCTCATATC
* * * *
74749280 ATTGCAGATGCCATGTCCCAGACATGATCTTACACTGGCTCTCATGTT
1 ATTGCAGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC
* * * * * *
74749328 GTGGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATC
1 ATTGCAGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC
* * * * *
74749376 AGTGCAGATGCCATGTCCCAAACATGGTTTTACATTGGCTCTCACAAC
1 ATTGCAGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC
* * *
74749424 ATCT-CCGATGCCATGTTCCAAACATGATCTTACACTGGCTCTCATATC
1 AT-TGCAGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC
*
74749472 -GTGACAGATGCCATGTCCCAAACATGGTCTTACACTG
1 ATTG-CAGATGCCATGTCCCAAACATGGTCTTACACTG
74749509 CACACATATC
Statistics
Matches: 185, Mismatches: 40, Indels: 8
0.79 0.17 0.03
Matches are distributed among these distances:
46 1 0.01
48 182 0.98
49 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
ATTGCAGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATC
Found at i:74749409 original size:96 final size:96
Alignment explanation
Indices: 74749238--74749508 Score: 339
Period size: 96 Copynumber: 2.8 Consensus size: 96
74749228 GTGAATTGCT
* * * *
74749238 GATGCCATG-CTCCAAACATGGTCTTACACTAGCTCTCGTCTCATTGCAGATGCCATGTCCCAGA
1 GATGCCATGTC-CCAAACATGGTCTTACACTAGCTCTCATATCAGTGCAGATGCCATGTCCCAAA
* ***** *
74749302 CATGATCTTACACTGGCTCTCATGTTGTGGCC
65 CATGGTCTTACACTGGCTCTCACAACATCGCC
* *
74749334 GATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAGTGCAGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAGTGCAGATGCCATGTCCCAAAC
* * *
74749399 ATGGTTTTACATTGGCTCTCACAACATCTCC
66 ATGGTCTTACACTGGCTCTCACAACATCGCC
* * *
74749430 GATGCCATGTTCCAAACATGATCTTACACTGGCTCTCATATC-GTGACAGATGCCATGTCCCAAA
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAGTG-CAGATGCCATGTCCCAAA
74749494 CATGGTCTTACACTG
65 CATGGTCTTACACTG
74749509 CACACATATC
Statistics
Matches: 150, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
95 3 0.02
96 146 0.97
97 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATATCAGTGCAGATGCCATGTCCCAAAC
ATGGTCTTACACTGGCTCTCACAACATCGCC
Found at i:74753737 original size:47 final size:47
Alignment explanation
Indices: 74753666--74754205 Score: 927
Period size: 47 Copynumber: 11.3 Consensus size: 47
74753656 CCCTTCGGGA
* * * * * *
74753666 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74753713 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74753760 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74753807 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74753854 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74753903 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74753952 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74753999 CTTATCACATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74754046 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74754095 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74754144 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74754191 CTTATCACATATATA
1 CTTATCACATATATA
74754206 TAGGCCTTAT
Statistics
Matches: 477, Mismatches: 12, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
47 287 0.60
49 190 0.40
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74753895 original size:96 final size:94
Alignment explanation
Indices: 74753666--74754205 Score: 927
Period size: 96 Copynumber: 5.7 Consensus size: 94
74753656 CCCTTCGGGA
* * * * * * *
74753666 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
74753731 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
74753760 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
74753825 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
74753854 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
74753919 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
74753952 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
74754017 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
74754046 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
74754111 ACACTTTCACATTCATCACATCGGCTATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
74754144 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
74754206 TAGGCCTTAT
Statistics
Matches: 428, Mismatches: 10, Indels: 16
0.94 0.02 0.04
Matches are distributed among these distances:
94 148 0.35
96 188 0.44
98 92 0.21
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:74754219 original size:116 final size:117
Alignment explanation
Indices: 74754090--74754305 Score: 407
Period size: 116 Copynumber: 1.8 Consensus size: 117
74754080 CATCGGCCAT
*
74754090 TAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-AT
1 TAGGCCTTATCACAAATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAAT
74754154 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
74754206 TAGGCCTTATCACAAATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
1 TAGGCCTTATCACAAATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACA-A
74754271 TATATACACTTTCACATTCATCACATCGGCCATTA
65 TATATACACTTTCACATTCATCACATCGGCCATTA
74754306 CGCCATACTA
Statistics
Matches: 97, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
116 61 0.63
118 36 0.37
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.33
Consensus pattern (117 bp):
TAGGCCTTATCACAAATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAAT
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
Found at i:74754227 original size:22 final size:20
Alignment explanation
Indices: 74754186--74754227 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
74754176 CATCGGCCAT
74754186 TAGGCCTTATCACATATATA
1 TAGGCCTTATCACATATATA
*
74754206 TAGGCCTTATCACAAATATA
1 TAGGCCTTATCACATATATA
74754226 TA
1 TA
74754228 CACTTTCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (20 bp):
TAGGCCTTATCACATATATA
Found at i:74754232 original size:69 final size:67
Alignment explanation
Indices: 74754139--74754276 Score: 249
Period size: 69 Copynumber: 2.0 Consensus size: 67
74754129 CATCGGCTAT
74754139 TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
74754204 TA
66 TA
*
74754206 TAGGCCTTATCACAAATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
1 TAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
74754271 TATA
64 TATA
74754275 TA
1 TA
74754277 CACTTTCACA
Statistics
Matches: 68, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
67 13 0.19
69 55 0.81
ACGTcount: A:0.33, C:0.25, G:0.09, T:0.33
Consensus pattern (67 bp):
TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
TA
Found at i:74754261 original size:49 final size:49
Alignment explanation
Indices: 74754206--74754305 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
74754196 CACATATATA
*
74754206 TAGGCCTTATCACAAATATATACACTTTCACATTCATCACATCGGCTAT
1 TAGGCCTTATCACAAATATATACACTTTCACATTCATCACATCGGCCAT
*
74754255 TAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT
1 TAGGCCTTATCACAAATATATACACTTTCACATTCATCACATCGGCCAT
74754304 TA
1 TA
74754306 CGCCATACTA
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (49 bp):
TAGGCCTTATCACAAATATATACACTTTCACATTCATCACATCGGCCAT
Found at i:74757618 original size:25 final size:24
Alignment explanation
Indices: 74757565--74757610 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
74757555 TTTCATCCTA
*
74757565 AAAATTAAATATTATTGTAAAAAC
1 AAAATTAAATATTAATGTAAAAAC
74757589 AAAATTAAA-ATTACATGTAAAA
1 AAAATTAAATATTA-ATGTAAAA
74757611 GAGAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.30
Consensus pattern (24 bp):
AAAATTAAATATTAATGTAAAAAC
Found at i:74758755 original size:47 final size:47
Alignment explanation
Indices: 74758702--74758798 Score: 131
Period size: 47 Copynumber: 2.1 Consensus size: 47
74758692 TAAACCAATA
* *
74758702 TTTATCTTAGTAATTATTATTTAAATCTCCCAACTTAACAAATTTAT
1 TTTATCTCAGTAATTATTATTTAAACCTCCCAACTTAACAAATTTAT
* * ** *
74758749 TTTATCTCATTACTTATTATTTAAACCTCTGAACTTATCAAATTTAT
1 TTTATCTCAGTAATTATTATTTAAACCTCCCAACTTAACAAATTTAT
74758796 TTT
1 TTT
74758799 TTTCAATTTC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.33, C:0.15, G:0.02, T:0.49
Consensus pattern (47 bp):
TTTATCTCAGTAATTATTATTTAAACCTCCCAACTTAACAAATTTAT
Found at i:74765639 original size:46 final size:47
Alignment explanation
Indices: 74765490--74765704 Score: 201
Period size: 47 Copynumber: 4.6 Consensus size: 47
74765480 GTAAGGTGCT
* *
74765490 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTATATCTCATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCATGCC
*
74765537 GGTGCCATGTCCCAGACATGGTCTTACACT-GAC-TATCATCTCATAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-CTTA-CATCTCAT-GCC
* *
74765585 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACGTCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTC-ATGCC
* * * * * * * *
74765631 AAT-ACATGTCCCAGACAT-ATTTTACAGTAGCACT-CGTCTCGATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGC-TTACATCTC-ATGCC
*
74765677 GATGCCATGTCCCAGACATAGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
74765705 TTGACTCTCA
Statistics
Matches: 141, Mismatches: 17, Indels: 19
0.80 0.10 0.11
Matches are distributed among these distances:
46 60 0.43
47 70 0.50
48 11 0.08
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCATGCC
Found at i:74765686 original size:93 final size:93
Alignment explanation
Indices: 74765486--74765704 Score: 232
Period size: 93 Copynumber: 2.3 Consensus size: 93
74765476 TGGCGTAAGG
* * * * ** *
74765486 TGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTTATATCTCATGTCGGTGCCATGTCCCA
1 TGCTGATGCCATGTCCCAGACATAGTCTTACACTAGCTTACATCTCAGGCCAATGACATGTCCCA
*
74765551 GACATGGTCTTACACTGACTATCATCTCA
66 GACATGATCTTACACTGAC-ATCATCTCA
* *
74765580 TAGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACGTCTCGAGGCCAAT-ACATGTCC
1 T-GCTGATGCCATGTCCCAGACATAGTCTTACACTAGCTTACATCTC-AGGCCAATGACATGTCC
* * *
74765642 CAGACAT-ATTTTACAGT-AGCACTCGTCTCGA
64 CAGACATGATCTTACACTGA-CA-TCATCTC-A
74765673 TGCTGATGCCATGTCCCAGACATAGTCTTACA
1 TGCTGATGCCATGTCCCAGACATAGTCTTACA
74765705 TTGACTCTCA
Statistics
Matches: 105, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
91 2 0.02
92 20 0.19
93 50 0.48
94 27 0.26
95 6 0.06
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (93 bp):
TGCTGATGCCATGTCCCAGACATAGTCTTACACTAGCTTACATCTCAGGCCAATGACATGTCCCA
GACATGATCTTACACTGACATCATCTCA
Found at i:74767007 original size:13 final size:13
Alignment explanation
Indices: 74766989--74767013 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74766979 AAGACCATGG
74766989 CTTCGATATGTGA
1 CTTCGATATGTGA
74767002 CTTCGATATGTG
1 CTTCGATATGTG
74767014 TTTACGAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (13 bp):
CTTCGATATGTGA
Found at i:74775556 original size:60 final size:60
Alignment explanation
Indices: 74775463--74775580 Score: 191
Period size: 60 Copynumber: 2.0 Consensus size: 60
74775453 TAGTAAACTA
* * * *
74775463 AACACAATAATTTATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTACG
1 AACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATCTTAAAATAATTACG
*
74775523 AACACAAAAATTTTTAACATAATCCTAAATTACTAACAAATTAATCTTAAAATAATTA
1 AACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATCTTAAAATAATTA
74775581 TAAAAAACAA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.52, C:0.13, G:0.01, T:0.35
Consensus pattern (60 bp):
AACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATCTTAAAATAATTACG
Found at i:74775768 original size:14 final size:14
Alignment explanation
Indices: 74775751--74775803 Score: 58
Period size: 14 Copynumber: 4.0 Consensus size: 14
74775741 ACCTTTTTTT
74775751 TTCTTTCTTTCTTC
1 TTCTTTCTTTCTTC
74775765 TTC-TTC--TCTTC
1 TTCTTTCTTTCTTC
*
74775776 TTCTTTTTTTCTTC
1 TTCTTTCTTTCTTC
* *
74775790 TCCTTTCTCTCTTC
1 TTCTTTCTTTCTTC
74775804 CGGTGTGTGG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
11 8 0.25
12 2 0.06
13 3 0.09
14 19 0.59
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
TTCTTTCTTTCTTC
Found at i:74776164 original size:23 final size:25
Alignment explanation
Indices: 74776124--74776174 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
74776114 ACATATATTT
*
74776124 AAATATTTTTAATAAAAATA-AAAA
1 AAATATTTTTAATAAAAAAACAAAA
* *
74776148 AAATA-TTTTATTTAAAAAACAAAA
1 AAATATTTTTAATAAAAAAACAAAA
74776172 AAA
1 AAA
74776175 ATTAATATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (25 bp):
AAATATTTTTAATAAAAAAACAAAA
Found at i:74778500 original size:20 final size:20
Alignment explanation
Indices: 74778462--74778515 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
74778452 AAGTTTTAAG
* *
74778462 ATAATTTTTAAAATTTAAAT
1 ATAATTTTTAAAATATAAAA
74778482 ATAATTTTATAAAA-ATAAAA
1 ATAATTTT-TAAAATATAAAA
74778502 ATAAATATTTTAAA
1 AT-AAT-TTTTAAA
74778516 TGCATTTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 14 0.48
21 12 0.41
22 3 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
ATAATTTTTAAAATATAAAA
Found at i:74778574 original size:18 final size:18
Alignment explanation
Indices: 74778547--74778585 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
74778537 GAGATTAAGT
74778547 TTAAAAAATTAAAATATA
1 TTAAAAAATTAAAATATA
* *
74778565 TTAAACAATTTAAATATA
1 TTAAAAAATTAAAATATA
74778583 TTA
1 TTA
74778586 TGCATAGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (18 bp):
TTAAAAAATTAAAATATA
Found at i:74795614 original size:43 final size:43
Alignment explanation
Indices: 74795566--74795851 Score: 342
Period size: 43 Copynumber: 6.7 Consensus size: 43
74795556 TGTAATTATG
* *
74795566 TGTAAGACCACATCTGGAACGTTGGCATCGATATGTGATTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
* * * *
74795609 TGTAAGACCACGTCTGGGATGTTGGCATCTATATATGATTATA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
* * **
74795652 TGTAAGACCACGTCTGGGACATTGGCATCGATATATGATTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
* * **
74795695 TGTAAGACCACGTCTGGGACGTCGACATCGATATGTGATTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
* * *
74795738 TGTAAGACCACGTCTTGGACGTCGGCATCAATATGTGATTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
* * *
74795781 TGTAAGACC-CTGTCTAGGACAG-TGGCATCAATATGCGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTACA
* *
74795824 TGTAAGACCGCGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
74795852 TGTACGAAAT
Statistics
Matches: 215, Mismatches: 24, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
42 1 0.00
43 212 0.99
44 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACA
Found at i:74795703 original size:129 final size:129
Alignment explanation
Indices: 74795560--74795851 Score: 379
Period size: 129 Copynumber: 2.3 Consensus size: 129
74795550 TCAATATGTA
* *
74795560 ATTATGTGTAAGACCACATCTGGAACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCTG
1 ATTATGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCTG
* * * * * * * *
74795625 GGATGTTGGCATCTATATATGATTATATGTAAGACCAC-GTCTGGGACATTGGCATCGATATATG
66 GGACGTCGGCATCAATATATGATTACATGTAAGACC-CTGTCTAGGACAGTGGCATCAATATACG
* * ** *
74795689 ATTATGTGTAAGACCACGTCTGGGACGTCGACATCGATATGTGATTATGTGTAAGACCACGTCTT
1 ATTATGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCTG
* *
74795754 GGACGTCGGCATCAATATGTGATTACATGTAAGACCCTGTCTAGGACAGTGGCATCAATATGCG
66 GGACGTCGGCATCAATATATGATTACATGTAAGACCCTGTCTAGGACAGTGGCATCAATATACG
** * *
74795818 ATTACATGTAAGACCGCGTCTGGGACATTGGCAT
1 ATTATGTGTAAGACCACGTCTGGGACGTTGGCAT
74795852 TGTACGAAAT
Statistics
Matches: 139, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
128 1 0.01
129 138 0.99
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (129 bp):
ATTATGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACATGTAAGACCACGTCTG
GGACGTCGGCATCAATATATGATTACATGTAAGACCCTGTCTAGGACAGTGGCATCAATATACG
Found at i:74802794 original size:46 final size:46
Alignment explanation
Indices: 74802727--74802818 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
74802717 AATGAATGTT
*
74802727 AGCCATCATTCAAGGCTTAATACCAAGTGAGGAATCTATCTCAAGC
1 AGCCATCATTCAAGGCTTAATACCAAGTGAGGAATCTATCCCAAGC
* * *
74802773 AGCCATCATTCAAGGCTTAATATCAAGTGTGGGATCTATCCCAAGC
1 AGCCATCATTCAAGGCTTAATACCAAGTGAGGAATCTATCCCAAGC
74802819 CAACACTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (46 bp):
AGCCATCATTCAAGGCTTAATACCAAGTGAGGAATCTATCCCAAGC
Found at i:74803379 original size:46 final size:47
Alignment explanation
Indices: 74803290--74803508 Score: 204
Period size: 46 Copynumber: 4.7 Consensus size: 47
74803280 GGGGTAAGGT
74803290 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GAC--ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTTACATCTCGTAG
* *
74803336 GCTGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCG-AG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGTAG
*** * * *
74803382 GCCGATGCATGTTTTAGACATGTCTTACACTAGCTCT-CGTCTC-AAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGTAG
* * **
74803428 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACA--TAATATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCGTA-G
74803476 GCCGATGCATGTCCCAGACATGTCTTACACTAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAG
74803509 TTCACACAAG
Statistics
Matches: 144, Mismatches: 18, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 69 0.48
47 27 0.19
48 21 0.15
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGTAG
Found at i:74803479 original size:94 final size:91
Alignment explanation
Indices: 74803339--74803508 Score: 234
Period size: 94 Copynumber: 1.8 Consensus size: 91
74803329 TCTCGTAGCT
* * * ***
74803339 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTTTTAGACATG
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCACATATC-AGGCCGATGCATGTCCCAGACATG
74803404 TCTTACACTAGCTCTCGTCTCAATGTC
65 TCTTACACTAGCTCTCGTCTCAATGTC
74803431 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAAT-ATGGCCGATGCATGTCCCAGAC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCACAT-ATCA-GGCCGATGCATGTCCCAGAC
74803495 ATGTCTTACACTAG
62 ATGTCTTACACTAG
74803509 TTCACACAAG
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
92 4 0.06
93 15 0.22
94 48 0.71
95 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (91 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCACATATCAGGCCGATGCATGTCCCAGACATGT
CTTACACTAGCTCTCGTCTCAATGTC
Found at i:74804913 original size:18 final size:19
Alignment explanation
Indices: 74804880--74804935 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 19
74804870 TATTAAAAGT
74804880 ATAATATAATTT-ATTATAA
1 ATAATA-AATTTAATTATAA
74804899 A-AATAAATTTAATTAATAA
1 ATAATAAATTTAATT-ATAA
74804918 ATAA-AAATTATAATTATA
1 ATAATAAATT-TAATTATA
74804936 TCAGTTGTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
17 5 0.15
18 7 0.21
19 14 0.42
20 7 0.21
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
ATAATAAATTTAATTATAA
Found at i:74806297 original size:91 final size:88
Alignment explanation
Indices: 74806190--74806363 Score: 204
Period size: 88 Copynumber: 1.9 Consensus size: 88
74806180 ATTTCGGGTT
* * ** *
74806190 TGAACTTAGTAACTTTTCTTACATTGGGGTTTAAACTTTATTTTTGGCCAAGTTAGGTCCTAAAC
1 TGAACTTAGCAACTTTTCTCACATTGGGGCCTAAA--TT-TTTTTGGCCAAGTTAGGTCATAAAC
74806255 TTGACAATTATTCCCACATTGAGACC
63 TTGACAATTATTCCCACATTGAGACC
* * * * *
74806281 TGAACTTGGCAACTTTTCTCATATTGGGGCCTGAATTTTTTTGTCCAAGTTAGGTCATCAACTTG
1 TGAACTTAGCAACTTTTCTCACATTGGGGCCTAAATTTTTTTGGCCAAGTTAGGTCATAAACTTG
* * *
74806346 GCAATTGTTCTCACATTG
66 ACAATTATTCCCACATTG
74806364 GGGCCTAAAT
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
88 40 0.57
89 2 0.03
91 28 0.40
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.39
Consensus pattern (88 bp):
TGAACTTAGCAACTTTTCTCACATTGGGGCCTAAATTTTTTTGGCCAAGTTAGGTCATAAACTTG
ACAATTATTCCCACATTGAGACC
Found at i:74809024 original size:92 final size:93
Alignment explanation
Indices: 74808854--74809024 Score: 281
Period size: 92 Copynumber: 1.8 Consensus size: 93
74808844 TGTGTGTGTC
*
74808854 AGTGTAAGACCTGTCTGGGACACGGCATCGACACAGATAAGTGAGAGCCAATGTAAGACCTATCT
1 AGTGTAAGACCTGTCTAGGACACGGCATCGACACAGATAAGTGAGAGCCAATGTAAGACCTATCT
74808919 GGGACATGGCATCGGCTTGAGGTGTATT
66 GGGACATGGCATCGGCTTGAGGTGTATT
* * * * *
74808947 AGTGTAAGACCTGTCTAGGACATGGCATCGACATAGAT-AGTGAGAGCCAGTGTAAGACTTGTCT
1 AGTGTAAGACCTGTCTAGGACACGGCATCGACACAGATAAGTGAGAGCCAATGTAAGACCTATCT
74809011 GGGACATGGCATCG
66 GGGACATGGCATCG
74809025 ACTTAGATGT
Statistics
Matches: 72, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 37 0.51
93 35 0.49
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACCTGTCTAGGACACGGCATCGACACAGATAAGTGAGAGCCAATGTAAGACCTATCT
GGGACATGGCATCGGCTTGAGGTGTATT
Found at i:74809066 original size:48 final size:48
Alignment explanation
Indices: 74808853--74809068 Score: 174
Period size: 48 Copynumber: 4.6 Consensus size: 48
74808843 ATGTGTGTGT
* * * *
74808853 CAGTGTAAGACCTGTCTGGGACACGGCATCGACACAGATAAGTGAGAGC
1 CAGTGTAAGACATGTCTGGAACATGGCATCGACATAGAT-AGTGAGAGC
* * * * * * * * *
74808902 CAATGTAAGACCTATCTGGGACATGGCATCGGC-TTGA-GGTG-TA-T
1 CAGTGTAAGACATGTCTGGAACATGGCATCGACATAGATAGTGAGAGC
* *
74808946 TAGTGTAAGACCTGTCTAGG-ACATGGCATCGACATAGATAGTGAGAGC
1 CAGTGTAAGACATGTCT-GGAACATGGCATCGACATAGATAGTGAGAGC
* * *
74808994 CAGTGTAAGACTTGTCTGGGACATGGCATCGACTTAGAT-GTGAGAGC
1 CAGTGTAAGACATGTCTGGAACATGGCATCGACATAGATAGTGAGAGC
* * *
74809041 TAGTGTAAGGCCATGTTTGGAACATGGC
1 CAGTGTAA-GACATGTCTGGAACATGGC
74809069 GTCGGCATCG
Statistics
Matches: 135, Mismatches: 25, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
44 26 0.19
45 6 0.04
46 6 0.04
47 18 0.13
48 50 0.37
49 29 0.21
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACATGTCTGGAACATGGCATCGACATAGATAGTGAGAGC
Found at i:74813746 original size:28 final size:28
Alignment explanation
Indices: 74813692--74813846 Score: 118
Period size: 28 Copynumber: 5.5 Consensus size: 28
74813682 TTCTCAAATT
* * *
74813692 TCGCACACTCAGTGCCTTCAC-GAATGTA
1 TCGCACACTAAGTGCCATC-CTGGATGTA
* *
74813720 TCGCGCACTAAGTGCCATCCTGGATGTC
1 TCGCACACTAAGTGCCATCCTGGATGTA
* * *
74813748 TCGCACACTAAGTGCCAT-TTGCAAT-AA
1 TCGCACACTAAGTGCCATCCTG-GATGTA
* * *
74813775 TTCGCACACTAAGTGCCATTTCTAGATGTT
1 -TCGCACACTAAGTGCCA-TCCTGGATGTA
* * *
74813805 TCGCACACTAAGTGCCATCTTGGATATC
1 TCGCACACTAAGTGCCATCCTGGATGTA
*
74813833 TCGCGCACTAAGTG
1 TCGCACACTAAGTG
74813847 TCATTTTCAC
Statistics
Matches: 100, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
27 3 0.03
28 76 0.76
29 20 0.20
30 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (28 bp):
TCGCACACTAAGTGCCATCCTGGATGTA
Found at i:74813762 original size:56 final size:57
Alignment explanation
Indices: 74813692--74813822 Score: 151
Period size: 56 Copynumber: 2.3 Consensus size: 57
74813682 TTCTCAAATT
* * * *
74813692 TCGCACACTCAGTGCC-TTCACGAAT-GTATCGCGCACTAAGTGCCA-TCCTGGATGTC
1 TCGCACACTAAGTGCCATTCAC-AATAAT-TCGCACACTAAGTGCCATTCCTAGATGTC
** * *
74813748 TCGCACACTAAGTGCCATTTGCAATAATTCGCACACTAAGTGCCATTTCTAGATGTT
1 TCGCACACTAAGTGCCATTCACAATAATTCGCACACTAAGTGCCATTCCTAGATGTC
74813805 TCGCACACTAAGTGCCAT
1 TCGCACACTAAGTGCCAT
74813823 CTTGGATATC
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
56 34 0.53
57 30 0.47
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (57 bp):
TCGCACACTAAGTGCCATTCACAATAATTCGCACACTAAGTGCCATTCCTAGATGTC
Found at i:74813818 original size:57 final size:57
Alignment explanation
Indices: 74813692--74813852 Score: 175
Period size: 57 Copynumber: 2.8 Consensus size: 57
74813682 TTCTCAAATT
* * ** * * * *
74813692 TCGCACACTCAGTGCCTTCACGAATGTATCGCGCACTAAGTGCCA-TCCTGGATGTC
1 TCGCACACTAAGTGCCATCTTGAATATCTCGCGCACTAAGTGCCATTTCTAGATGTC
* *
74813748 TCGCACACTAAGTGCCAT-TTGCAATAAT-TCGCACACTAAGTGCCATTTCTAGATGTT
1 TCGCACACTAAGTGCCATCTTG-AAT-ATCTCGCGCACTAAGTGCCATTTCTAGATGTC
* *
74813805 TCGCACACTAAGTGCCATCTTGGATATCTCGCGCACTAAGTGTCATTT
1 TCGCACACTAAGTGCCATCTTGAATATCTCGCGCACTAAGTGCCATTT
74813853 TCACAATCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
55 1 0.01
56 37 0.42
57 47 0.53
58 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (57 bp):
TCGCACACTAAGTGCCATCTTGAATATCTCGCGCACTAAGTGCCATTTCTAGATGTC
Found at i:74813829 original size:85 final size:84
Alignment explanation
Indices: 74813691--74813852 Score: 220
Period size: 85 Copynumber: 1.9 Consensus size: 84
74813681 ATTCTCAAAT
* * *
74813691 TTCGCACACTCAGTGCCTTCACGAATGTATCGCGCACTAAGTGCCATCCTGGATGTCTCGCACAC
1 TTCGCACACTAAGTGCCTTCACGAATGTATCGCACACTAAGTGCCATCCTGGATATCTCGCACAC
74813756 TAAGTGCCATTTGCAATAA
66 TAAGTGCCATTTGCAATAA
* * *
74813775 TTCGCACACTAAGTGCCATTTCTA-G-ATGTTTCGCACACTAAGTGCCATCTTGGATATCTCGCG
1 TTCGCACACTAAGTGCC--TTC-ACGAATGTATCGCACACTAAGTGCCATCCTGGATATCTCGCA
*
74813838 CACTAAGTGTCATTT
63 CACTAAGTGCCATTT
74813853 TCACAATCAA
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
84 16 0.24
85 47 0.69
86 4 0.06
87 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (84 bp):
TTCGCACACTAAGTGCCTTCACGAATGTATCGCACACTAAGTGCCATCCTGGATATCTCGCACAC
TAAGTGCCATTTGCAATAA
Found at i:74821250 original size:28 final size:28
Alignment explanation
Indices: 74821219--74821336 Score: 107
Period size: 28 Copynumber: 4.2 Consensus size: 28
74821209 ATCGTGCACA
* *
74821219 AAGTGCCATCCTGGATGTCTCGCACGCT
1 AAGTGCCATCCTGGATATCTCGCACACT
* *
74821247 AAGTGCCAT-TTGCAATAAT-TCGCACACT
1 AAGTGCCATCCTG-GAT-ATCTCGCACACT
* * *
74821275 AAGTGCCATTTCTGGATGTTTCGCACACT
1 AAGTGCCA-TCCTGGATATCTCGCACACT
*
74821304 AAGTGCCATCTTGGATATCTCG-AGCACT
1 AAGTGCCATCCTGGATATCTCGCA-CACT
74821332 AAGTG
1 AAGTG
74821337 TCATTTTCAC
Statistics
Matches: 73, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
27 3 0.04
28 47 0.64
29 21 0.29
30 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (28 bp):
AAGTGCCATCCTGGATATCTCGCACACT
Found at i:74821332 original size:57 final size:58
Alignment explanation
Indices: 74821214--74821342 Score: 151
Period size: 57 Copynumber: 2.3 Consensus size: 58
74821204 GATGTATCGT
* * *
74821214 GCACAAAGTGCCA-TCCTGGATGTCTCGCACGCTAAGTGCCATTTGCAATAATTCGCA
1 GCACTAAGTGCCATTTCTGGATGTCTCGCACACTAAGTGCCATTTGCAATAATTCGCA
* *
74821271 -CACTAAGTGCCATTTCTGGATGTTTCGCACACTAAGTGCCATCTTG-GAT-ATCTCG-A
1 GCACTAAGTGCCATTTCTGGATGTCTCGCACACTAAGTGCCAT-TTGCAATAAT-TCGCA
*
74821327 GCACTAAGTGTCATTT
1 GCACTAAGTGCCATTT
74821343 TCACAATCAG
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
56 14 0.23
57 45 0.73
58 3 0.05
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (58 bp):
GCACTAAGTGCCATTTCTGGATGTCTCGCACACTAAGTGCCATTTGCAATAATTCGCA
Found at i:74832027 original size:3 final size:3
Alignment explanation
Indices: 74832014--74832086 Score: 137
Period size: 3 Copynumber: 24.3 Consensus size: 3
74832004 TATTGAAGAA
*
74832014 TCT TAT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
74832062 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
74832087 TTATGCTTTA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 68 1.00
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:74832136 original size:28 final size:29
Alignment explanation
Indices: 74832104--74832163 Score: 95
Period size: 28 Copynumber: 2.1 Consensus size: 29
74832094 TTATTTAATC
74832104 TGTTTATTTCTAGGTTTTGC-AAAGTTTA
1 TGTTTATTTCTAGGTTTTGCAAAAGTTTA
*
74832132 TGTTTTTTTCTAGGTTTTGCATAAAGTTTA
1 TGTTTATTTCTAGGTTTTGCA-AAAGTTTA
74832162 TG
1 TG
74832164 CTTGTTGTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 19 0.66
30 10 0.34
ACGTcount: A:0.20, C:0.07, G:0.18, T:0.55
Consensus pattern (29 bp):
TGTTTATTTCTAGGTTTTGCAAAAGTTTA
Found at i:74834097 original size:30 final size:30
Alignment explanation
Indices: 74834063--74834120 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
74834053 TTTTCGAGCA
*
74834063 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTTTGCCAAAGTC
*
74834093 TAGGGGCAAAATGGTCATTTTGCTAAAG
1 TAGGGGCAAAATGGTCATTTTGCCAAAG
74834121 ATGTGGATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTGCCAAAGTC
Found at i:74834168 original size:52 final size:52
Alignment explanation
Indices: 74834106--74834209 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
74834096 GGGCAAAATG
74834106 GTCATTTTGCTAAAGATGTGGATTTATGATTGAATAATTGTAATTAGTGACT
1 GTCATTTTGCTAAAGATGTGGATTTATGATTGAATAATTGTAATTAGTGACT
*
74834158 GTCATTTTGCTAAATATGTGGATTTATGATTGAATAATTGTAATTAGTGACT
1 GTCATTTTGCTAAAGATGTGGATTTATGATTGAATAATTGTAATTAGTGACT
74834210 AAATGAGTAC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.31, C:0.06, G:0.20, T:0.43
Consensus pattern (52 bp):
GTCATTTTGCTAAAGATGTGGATTTATGATTGAATAATTGTAATTAGTGACT
Found at i:74834621 original size:47 final size:46
Alignment explanation
Indices: 74834511--74834779 Score: 208
Period size: 47 Copynumber: 5.7 Consensus size: 46
74834501 TTACTTGTGC
* * **
74834511 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGAGATGAGT
1 GCCAGTATAAGACATGTCTAGGACATGCATCGGCACAGAGATGAGT
* *
74834557 GCTAGTATAAGACCATGTCTAGGACATGGCATCAGCACAGAGATGAGT
1 GCCAGTATAAGA-CATGTCTAGGACAT-GCATCGGCACAGAGATGAGT
* *
74834605 GCCAGTATAAGACATGTCTGGGACATGCATCGGC-CTCGATGATGA-T
1 GCCAGTATAAGACATGTCTAGGACATGCATCGGCAC-AGA-GATGAGT
* * * * *
74834651 AGCCAGTGTAAGACGTGTCTAGGATATGAATCGGCTA-AGAG-T-TGT
1 -GCCAGTATAAGACATGTCTAGGACATGCATCGGC-ACAGAGATGAGT
* * * * * *
74834696 GCTAGTGTAAGACATGTTTAGGACATGCATCAGCAC-GTGTATACGAGA
1 GCCAGTATAAGACATGTCTAGGACATGCATCGGCACAGAG-AT--GAGT
* *
74834744 GCTAGTATAAGACCATGTCTGGGACATGGCATCGGC
1 GCCAGTATAAGA-CATGTCTAGGACAT-GCATCGGC
74834780 CTCGATGATG
Statistics
Matches: 177, Mismatches: 30, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
43 3 0.02
44 28 0.16
45 4 0.02
46 21 0.12
47 62 0.35
48 40 0.23
49 12 0.07
50 7 0.04
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (46 bp):
GCCAGTATAAGACATGTCTAGGACATGCATCGGCACAGAGATGAGT
Found at i:74834776 original size:141 final size:141
Alignment explanation
Indices: 74834511--74834820 Score: 400
Period size: 141 Copynumber: 2.2 Consensus size: 141
74834501 TTACTTGTGC
* *
74834511 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGAGATGAGTGCTAGTATAAGACCATGTC
1 GCCAGTGTAAGACATGTCTAGGACATGAATCGGCGTAGAGATGAGTGCTAGTATAAGACCATGTC
*
74834576 TAGGACATGGCATCAGCACAGAGATGAGTGCCAGTATAAGACATGTCTGGGACATGCATCGGCCT
66 TAGGACATGGCATCAGCACAGAGATGAGAGCCAGTATAAGACATGTCTGGGACATGCATCGGCCT
74834641 CGATGATGATA
131 CGATGATGATA
* * * *
74834652 GCCAGTGTAAGACGTGTCTAGGATATGAATCGGC-TA-AGA-GTTGTGCTAGTGTAAGA-CATGT
1 GCCAGTGTAAGACATGTCTAGGACATGAATCGGCGTAGAGATG-AGTGCTAGTATAAGACCATGT
* * *
74834713 TTAGGACAT-GCATCAGCAC-GTGTATACGAGAGCTAGTATAAGACCATGTCTGGGACATGGCAT
65 CTAGGACATGGCATCAGCACAGAG-AT--GAGAGCCAGTATAAGA-CATGTCTGGGACAT-GCAT
*
74834776 CGGCCTCGATGATGCTA
125 CGGCCTCGATGATGATA
74834793 GCCAGTGTAAGACCATGTCT-GAGACATG
1 GCCAGTGTAAGA-CATGTCTAG-GACATG
74834821 GCATCGGTAA
Statistics
Matches: 148, Mismatches: 13, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
136 2 0.01
137 12 0.08
138 14 0.09
139 30 0.20
140 16 0.11
141 63 0.43
142 11 0.07
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (141 bp):
GCCAGTGTAAGACATGTCTAGGACATGAATCGGCGTAGAGATGAGTGCTAGTATAAGACCATGTC
TAGGACATGGCATCAGCACAGAGATGAGAGCCAGTATAAGACATGTCTGGGACATGCATCGGCCT
CGATGATGATA
Found at i:74835132 original size:11 final size:11
Alignment explanation
Indices: 74835116--74835150 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
74835106 TTATGCTTAC
74835116 TCTCTTTCCTT
1 TCTCTTTCCTT
74835127 TCTCTTTCCTT
1 TCTCTTTCCTT
*
74835138 TCTCTTTTCTT
1 TCTCTTTCCTT
74835149 TC
1 TC
74835151 AGTGCCGCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (11 bp):
TCTCTTTCCTT
Found at i:74835769 original size:19 final size:19
Alignment explanation
Indices: 74835725--74835769 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
74835715 CTAAGGGCAT
74835725 GGGCGTGCCCAAGCCACAC
1 GGGCGTGCCCAAGCCACAC
** * *
74835744 GAACGTGCGCAAGCCATAC
1 GGGCGTGCCCAAGCCACAC
74835763 GGGCGTG
1 GGGCGTG
74835770 TGGAGCCTAA
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.22, C:0.33, G:0.36, T:0.09
Consensus pattern (19 bp):
GGGCGTGCCCAAGCCACAC
Found at i:74837890 original size:32 final size:32
Alignment explanation
Indices: 74837852--74837935 Score: 107
Period size: 32 Copynumber: 2.6 Consensus size: 32
74837842 TTAAAATTTT
*
74837852 AGTTTGTTGGATTTTGAAATTATTATGTCTTGA
1 AGTTTGTTGGATATTGAAATTATTATGT-TTGA
* * *
74837885 A-TTTGTTAGATATTGAATTTATTATGTTTTA
1 AGTTTGTTGGATATTGAAATTATTATGTTTGA
*
74837916 AGCTTGTTGGATATTGAAAT
1 AGTTTGTTGGATATTGAAAT
74837936 GATTGACAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
31 4 0.09
32 38 0.88
33 1 0.02
ACGTcount: A:0.27, C:0.02, G:0.19, T:0.51
Consensus pattern (32 bp):
AGTTTGTTGGATATTGAAATTATTATGTTTGA
Found at i:74846075 original size:40 final size:39
Alignment explanation
Indices: 74846031--74846130 Score: 96
Period size: 40 Copynumber: 2.5 Consensus size: 39
74846021 AAAGAATGCA
* *
74846031 AAAATTTCTAAGGGCATATTCTTA-AATATTTTGATATTTC
1 AAAATTTCTAA-GGCATATACATACAA-ATTTTGATATTTC
* *
74846071 AAAATATCTAA-GCATACGTACATACAAATTTTGGTATTTC
1 AAAATTTCTAAGGCATA--TACATACAAATTTTGATATTTC
74846111 AAAATTTCTAAAGAGCATAT
1 AAAATTTCT-AAG-GCATAT
74846131 CACTAGCTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
38 5 0.10
40 34 0.69
41 5 0.10
43 5 0.10
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (39 bp):
AAAATTTCTAAGGCATATACATACAAATTTTGATATTTC
Found at i:74850462 original size:19 final size:20
Alignment explanation
Indices: 74850438--74850482 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
74850428 CAACTATTTT
74850438 TATGTAAGTATGCAA-TACA
1 TATGTAAGTATGCAAGTACA
* *
74850457 TATGTATGTATGCAAGTATA
1 TATGTAAGTATGCAAGTACA
74850477 TATGTA
1 TATGTA
74850483 TTTCGTAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (20 bp):
TATGTAAGTATGCAAGTACA
Found at i:74854099 original size:31 final size:31
Alignment explanation
Indices: 74854063--74854127 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
74854053 TTCTAACGTG
* * *
74854063 GCATGCCACGTTAGCACCATTTTTCATGTCA
1 GCATGCCACATCAGCACCATTTATCATGTCA
* *
74854094 GCATGCTACATCAGCATCATTTATCATGTCA
1 GCATGCCACATCAGCACCATTTATCATGTCA
74854125 GCA
1 GCA
74854128 AAATTAACGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (31 bp):
GCATGCCACATCAGCACCATTTATCATGTCA
Found at i:74854430 original size:17 final size:18
Alignment explanation
Indices: 74854408--74854446 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
74854398 CACTACAATT
*
74854408 TTTTTAAATAAATT-TTA
1 TTTTTAAAAAAATTATTA
74854425 TTTTTAAAAAAATTATTA
1 TTTTTAAAAAAATTATTA
74854443 TTTT
1 TTTT
74854447 ATTAGTAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTTTAAAAAAATTATTA
Found at i:74854601 original size:23 final size:22
Alignment explanation
Indices: 74854575--74854626 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 22
74854565 AAAAAATAGG
*
74854575 GAAAGAAAGGAGAGGAAGGAGAA
1 GAAAGAAAGGAGA-GAAGCAGAA
*
74854598 GAAATAAA--AGAGAAGCAGAA
1 GAAAGAAAGGAGAGAAGCAGAA
74854618 G-AAGAAAGG
1 GAAAGAAAGG
74854627 GAAAAAAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 6
0.73 0.09 0.18
Matches are distributed among these distances:
19 5 0.21
20 9 0.38
21 3 0.12
23 7 0.29
ACGTcount: A:0.60, C:0.02, G:0.37, T:0.02
Consensus pattern (22 bp):
GAAAGAAAGGAGAGAAGCAGAA
Found at i:74854768 original size:23 final size:22
Alignment explanation
Indices: 74854742--74854790 Score: 55
Period size: 24 Copynumber: 2.2 Consensus size: 22
74854732 AATGTTCATG
74854742 TTTTAAT-TTTTTTTATGAATGTA
1 TTTTAATGTTTTTTTAT-AAT-TA
**
74854765 TTTTTTTGTTTTTTTATAATTA
1 TTTTAATGTTTTTTTATAATTA
74854787 TTTT
1 TTTT
74854791 GTTAGTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 6 0.26
23 8 0.35
24 9 0.39
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.73
Consensus pattern (22 bp):
TTTTAATGTTTTTTTATAATTA
Found at i:74855258 original size:48 final size:48
Alignment explanation
Indices: 74855206--74855351 Score: 121
Period size: 48 Copynumber: 3.1 Consensus size: 48
74855196 TATTTTGTTA
*
74855206 GTAATTTATGATTAGGTTATAAAATGTTAGTGTTTAGTTTAGTGTTTT
1 GTAATTTATGATTAGGTTATAAAATGTTAGTATTTAGTTTAGTGTTTT
* * * * *
74855254 GTAATTT-T--TTATG-AATGTAAAT-TT--TTTTATAG-TTA-TTTTATT
1 GTAATTTATGATTAGGTTAT-AAAATGTTAGTATT-TAGTTTAGTGTT-TT
* *
74855296 AGTAATTTATGATTAGATTATAAATTGTTAGTATTTAGTTTAGTGTTTT
1 -GTAATTTATGATTAGGTTATAAAATGTTAGTATTTAGTTTAGTGTTTT
74855345 GTAATTT
1 GTAATTT
74855352 TTTATGAATG
Statistics
Matches: 73, Mismatches: 12, Indels: 26
0.66 0.11 0.23
Matches are distributed among these distances:
41 3 0.04
42 8 0.11
43 10 0.14
44 5 0.07
45 8 0.11
46 6 0.08
47 5 0.07
48 17 0.23
49 8 0.11
50 3 0.04
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (48 bp):
GTAATTTATGATTAGGTTATAAAATGTTAGTATTTAGTTTAGTGTTTT
Found at i:74855262 original size:104 final size:101
Alignment explanation
Indices: 74855076--74855368 Score: 365
Period size: 91 Copynumber: 3.0 Consensus size: 101
74855066 ACTGTCCTTC
* * *
74855076 AAAATTATTTTATAGTTATTTTGTTAATAACTTATAATTAGGTTATAAATTGTT-GTGTTTAGTT
1 AAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTGTTTAGTT
* *
74855140 TAGTGTTTTGTGATTTTTTATTAATGTAAATTTATTTTTT
66 TAGTGTTTTGT-AATTTTTATTAATGTAAATTTA---TGT
*
74855180 AAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAAATGTTAGTGTTTAGTT
1 AAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTGTTTAGTT
74855245 TAGTGTTTTGTAA-TTTT-TT-ATG---A---ATGT
66 TAGTGTTTTGTAATTTTTATTAATGTAAATTTATGT
* * * *
74855272 -AAATTTTTTTATAGTTATTTTATTAGTAATTTATGATTAGATTATAAATTGTTAGTATTTAGTT
1 AAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTGTTTAGTT
*
74855336 TAGTGTTTTGTAATTTTTTATGAATGTAAATTT
66 TAGTGTTTTGTAA-TTTTTATTAATGTAAATTT
74855369 TTTATAATGT
Statistics
Matches: 166, Mismatches: 12, Indels: 25
0.82 0.06 0.12
Matches are distributed among these distances:
91 72 0.43
92 2 0.01
93 4 0.02
94 1 0.01
95 4 0.02
98 2 0.01
101 3 0.02
102 2 0.01
103 4 0.02
104 51 0.31
105 21 0.13
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (101 bp):
AAAATTATTTTATAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTAGTGTTTAGTT
TAGTGTTTTGTAATTTTTATTAATGTAAATTTATGT
Found at i:74855369 original size:17 final size:16
Alignment explanation
Indices: 74855347--74855384 Score: 67
Period size: 16 Copynumber: 2.3 Consensus size: 16
74855337 AGTGTTTTGT
74855347 AATTTTTTATGAATGTA
1 AATTTTTTAT-AATGTA
74855364 AATTTTTTATAATGTA
1 AATTTTTTATAATGTA
74855380 AATTT
1 AATTT
74855385 ATTTGTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (16 bp):
AATTTTTTATAATGTA
Found at i:74855553 original size:19 final size:21
Alignment explanation
Indices: 74855513--74855558 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 21
74855503 TGTCAATTCG
74855513 TATATT-T-TTTATATTTAGA
1 TATATTATGTTTATATTTAGA
*
74855532 TATTTTATGTTTAT-TTTA-A
1 TATATTATGTTTATATTTAGA
74855551 TATATTAT
1 TATATTAT
74855559 TATTGTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 13 0.57
20 5 0.22
21 5 0.22
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (21 bp):
TATATTATGTTTATATTTAGA
Found at i:74856453 original size:13 final size:13
Alignment explanation
Indices: 74856435--74856463 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
74856425 GGACATGGCT
74856435 GTGTGGCCAGCCC
1 GTGTGGCCAGCCC
74856448 GTGTGGCCAGCCC
1 GTGTGGCCAGCCC
74856461 GTG
1 GTG
74856464 GGGTTCCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.34, G:0.41, T:0.17
Consensus pattern (13 bp):
GTGTGGCCAGCCC
Found at i:74858266 original size:10 final size:10
Alignment explanation
Indices: 74858251--74858285 Score: 52
Period size: 10 Copynumber: 3.3 Consensus size: 10
74858241 AAAACCCTAT
74858251 TTTTTCTTTC
1 TTTTTCTTTC
74858261 TTTTTCTTTCCC
1 TTTTTCTTT--C
74858273 TTTTTCTTTC
1 TTTTTCTTTC
74858283 TTT
1 TTT
74858286 CTTTCCATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 13 0.57
12 10 0.43
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTTCTTTC
Found at i:74858275 original size:12 final size:11
Alignment explanation
Indices: 74858251--74858328 Score: 54
Period size: 12 Copynumber: 6.8 Consensus size: 11
74858241 AAAACCCTAT
74858251 TTTTTCTTT-C
1 TTTTTCTTTCC
74858261 TTTTTCTTTCCC
1 TTTTTCTTT-CC
*
74858273 TTTTTCTTTCT
1 TTTTTCTTTCC
74858284 TTCTTTCCATGTT-C
1 TT-TTT-C-T-TTCC
* *
74858298 TGTTTC-GTCC
1 TTTTTCTTTCC
74858308 TTCTTTCTTTCC
1 TT-TTTCTTTCC
74858320 TTTTTCTTT
1 TTTTTCTTT
74858329 ATTTTATTTC
Statistics
Matches: 53, Mismatches: 6, Indels: 17
0.70 0.08 0.22
Matches are distributed among these distances:
9 1 0.02
10 11 0.21
11 14 0.26
12 19 0.36
13 4 0.08
14 2 0.04
15 2 0.04
ACGTcount: A:0.01, C:0.26, G:0.04, T:0.69
Consensus pattern (11 bp):
TTTTTCTTTCC
Found at i:74858354 original size:8 final size:8
Alignment explanation
Indices: 74858341--74858378 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
74858331 TTTATTTCTT
74858341 TTATTATA
1 TTATTATA
74858349 TTATTA-A
1 TTATTATA
*
74858356 CTATTATA
1 TTATTATA
74858364 TTATTATAA
1 TTATTAT-A
74858373 TTATTA
1 TTATTA
74858379 ATTTCTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
7 6 0.23
8 13 0.50
9 7 0.27
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (8 bp):
TTATTATA
Found at i:74861899 original size:12 final size:12
Alignment explanation
Indices: 74861882--74861907 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
74861872 CAACTCAATG
74861882 ACAATCCTCGGC
1 ACAATCCTCGGC
74861894 ACAATCCTCGGC
1 ACAATCCTCGGC
74861906 AC
1 AC
74861908 GTACTCCCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.42, G:0.15, T:0.15
Consensus pattern (12 bp):
ACAATCCTCGGC
Found at i:74864257 original size:24 final size:26
Alignment explanation
Indices: 74864230--74864278 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
74864220 ACAAACATTA
*
74864230 AACTAAC-AAATAA-TTTATAATAAT
1 AACTAACAAAATAACTTTAAAATAAT
74864254 AACTAACAAAATAACTTTAAAATAA
1 AACTAACAAAATAACTTTAAAATAA
74864279 ATTAAAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 6 0.27
26 9 0.41
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (26 bp):
AACTAACAAAATAACTTTAAAATAAT
Found at i:74864437 original size:22 final size:20
Alignment explanation
Indices: 74864390--74864438 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 20
74864380 ATACATTATC
*
74864390 CTTCTTTTTTCTTCTCCTTT
1 CTTCTTTTTTCTTCTCCTCT
74864410 CTTTCTTTCTTTCTTCTCCCTCT
1 C-TTCTTT-TTTCTTCT-CCTCT
74864433 CTTCTT
1 CTTCTT
74864439 CATTTTCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 6 0.24
22 13 0.52
23 5 0.20
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (20 bp):
CTTCTTTTTTCTTCTCCTCT
Found at i:74869395 original size:32 final size:32
Alignment explanation
Indices: 74869359--74869422 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
74869349 TAGGATACTA
74869359 AATGTATGTTTATTATCTGTATATAAGCATGT
1 AATGTATGTTTATTATCTGTATATAAGCATGT
*
74869391 AATGTATGTTTGTTATCTGTATATAAGCATGT
1 AATGTATGTTTATTATCTGTATATAAGCATGT
74869423 GGAGCATGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.06, G:0.17, T:0.47
Consensus pattern (32 bp):
AATGTATGTTTATTATCTGTATATAAGCATGT
Found at i:74869687 original size:13 final size:14
Alignment explanation
Indices: 74869663--74869693 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
74869653 GGGGTAGGAT
74869663 TCTGTGTATCTGTA
1 TCTGTGTATCTGTA
74869677 TCTGT-TATCTGTA
1 TCTGTGTATCTGTA
74869690 TCTG
1 TCTG
74869694 AATTGGACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.13, C:0.16, G:0.19, T:0.52
Consensus pattern (14 bp):
TCTGTGTATCTGTA
Found at i:74872226 original size:22 final size:22
Alignment explanation
Indices: 74872179--74872228 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
74872169 ACTCATTAGT
* *
74872179 TTATAATATAGATTTTTAGGAT
1 TTATAATATAAATTTTTAGGAC
*
74872201 TTATAATATAAATTGTTTATG-C
1 TTATAATATAAATT-TTTAGGAC
74872223 TTATAA
1 TTATAA
74872229 CACAATCTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (22 bp):
TTATAATATAAATTTTTAGGAC
Found at i:74877357 original size:18 final size:17
Alignment explanation
Indices: 74877298--74877357 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 17
74877288 AAAGGGTGGG
74877298 AAGTAAAAGTTTAGGGAA
1 AAGTAAAAGTTTAGGG-A
* *
74877316 AAATAAAAAGTTT-TGGA
1 AAGT-AAAAGTTTAGGGA
*
74877333 GAGTAAAAGTTTGAGGGA
1 AAGTAAAAGTTT-AGGGA
74877351 AAGTAAA
1 AAGTAAA
74877358 TAGGAGGGAG
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
16 8 0.24
17 3 0.09
18 14 0.42
19 8 0.24
ACGTcount: A:0.50, C:0.00, G:0.27, T:0.23
Consensus pattern (17 bp):
AAGTAAAAGTTTAGGGA
Found at i:74877719 original size:18 final size:18
Alignment explanation
Indices: 74877696--74877732 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
74877686 TATAGTTTGA
*
74877696 TATTCGATTTACTCGAAT
1 TATTCGAGTTACTCGAAT
*
74877714 TATTCGAGTTATTCGAAT
1 TATTCGAGTTACTCGAAT
74877732 T
1 T
74877733 TGAAAACTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.46
Consensus pattern (18 bp):
TATTCGAGTTACTCGAAT
Found at i:74882065 original size:17 final size:17
Alignment explanation
Indices: 74882043--74882075 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
74882033 CCTCATAAGG
74882043 TTAGTAATTATAACATA
1 TTAGTAATTATAACATA
74882060 TTAGTAATTATAACAT
1 TTAGTAATTATAACAT
74882076 TACCTGTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (17 bp):
TTAGTAATTATAACATA
Found at i:74904165 original size:42 final size:41
Alignment explanation
Indices: 74904051--74904166 Score: 128
Period size: 42 Copynumber: 2.8 Consensus size: 41
74904041 CATAGTACCG
* *
74904051 TATCAATGCCATATCCCGAATATGGTCTTACATGAAATATCA
1 TATCGATGCCATATCCCG-ATATGGTCTTATATGAAATATCA
* * *
74904093 TATCGATGCCATGTCCTTGACATGGTCTTATATGAAATCA-CA
1 TATCGATGCCATATCC-CGATATGGTCTTATATGAAAT-ATCA
74904135 TA-CTGATGCCATATCCCAGATATGGTCTTATA
1 TATC-GATGCCATATCCC-GATATGGTCTTATA
74904167 CAGAATCTCG
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
41 1 0.02
42 59 0.95
43 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.33
Consensus pattern (41 bp):
TATCGATGCCATATCCCGATATGGTCTTATATGAAATATCA
Found at i:74906222 original size:20 final size:20
Alignment explanation
Indices: 74906194--74906235 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
74906184 AGGGTGCGAG
*
74906194 ATTCCGGAGTATCTAATATT
1 ATTCCGGAGTATCTAACATT
*
74906214 ATTCTGGAGTATCTAACATT
1 ATTCCGGAGTATCTAACATT
74906234 AT
1 AT
74906236 ATGAGATATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.40
Consensus pattern (20 bp):
ATTCCGGAGTATCTAACATT
Found at i:74906300 original size:96 final size:96
Alignment explanation
Indices: 74906134--74906313 Score: 324
Period size: 96 Copynumber: 1.9 Consensus size: 96
74906124 CGAGAGTGAG
*
74906134 CATTATATGAGATATGAGATTGAAATAGCTTCGGCCTAGTATTGGCACTTAGGGTGCGAGATTCC
1 CATTATATGAGATATGAGATTGAAATAGCTTCGGCCTAGTATTGACACTTAGGGTGCGAGATTCC
*
74906199 GGAGTATCTAATATTATTCTGGAGTATCTAA
66 AGAGTATCTAATATTATTCTGGAGTATCTAA
* *
74906230 CATTATATGAGATATGAGATTGAAATAGCTTCGGCCTTGTATTGACACTTAGGGTGCGAGATTTC
1 CATTATATGAGATATGAGATTGAAATAGCTTCGGCCTAGTATTGACACTTAGGGTGCGAGATTCC
74906295 AGAGTATCTAATATTATTC
66 AGAGTATCTAATATTATTC
74906314 CAAATGGTTC
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 80 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (96 bp):
CATTATATGAGATATGAGATTGAAATAGCTTCGGCCTAGTATTGACACTTAGGGTGCGAGATTCC
AGAGTATCTAATATTATTCTGGAGTATCTAA
Found at i:74915978 original size:43 final size:43
Alignment explanation
Indices: 74915923--74916005 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
74915913 TCAATGCTTA
*
74915923 CATTTTGGTTTGGGATTACCGACACTACCAACACTGGTTACAG
1 CATTTTGGTTTGGGATTACCGACACTACCAACACAGGTTACAG
*
74915966 CATTTTGGTTTGGGATTACCGACACTACCCACACAGGTTA
1 CATTTTGGTTTGGGATTACCGACACTACCAACACAGGTTA
74916006 TAGAAGGAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (43 bp):
CATTTTGGTTTGGGATTACCGACACTACCAACACAGGTTACAG
Found at i:74917395 original size:21 final size:21
Alignment explanation
Indices: 74917345--74917396 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
74917335 ATGGTCCAAG
* *
74917345 GGACACGCCCGTGTAACCCTA
1 GGACACGCTCATGTAACCCTA
* *
74917366 GCACACGCTCATGTGACCCTA
1 GGACACGCTCATGTAACCCTA
74917387 GGACACGCTC
1 GGACACGCTC
74917397 GTTTTACAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.38, G:0.23, T:0.15
Consensus pattern (21 bp):
GGACACGCTCATGTAACCCTA
Found at i:74925270 original size:48 final size:48
Alignment explanation
Indices: 74925135--74925273 Score: 176
Period size: 47 Copynumber: 2.9 Consensus size: 48
74925125 CATACAGTGT
* *
74925135 AATGTCGATGCCATGTCCCAGACATGGTCTTACACCGGCT-TACATCAC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATCAC
* * * * * *
74925183 GAGGCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCGTCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCAC
74925229 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
74925274 AATGTGGCTG
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
46 24 0.32
47 27 0.36
48 24 0.32
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCAC
Found at i:74925291 original size:47 final size:46
Alignment explanation
Indices: 74925140--74925308 Score: 159
Period size: 47 Copynumber: 3.6 Consensus size: 46
74925130 AGTGTAATGT
* * *
74925140 CGATGCCATGTCCCAGACATGGTCTTACACCGGCT-TACATCACGAGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCT-CAT-AAGTGGC
* * *
74925188 CGATG-CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAA-T-GC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTC--AT-AAGTGGC
74925234 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAA-GTGGC
* *
74925282 TGATG-CATGTCACAGACATGTCTTACA
1 CGATGCCATGTCCCAGACATGTCTTACA
74925309 ATAGCACACA
Statistics
Matches: 102, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
45 2 0.02
46 29 0.28
47 41 0.40
48 30 0.29
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATAAGTGGC
Found at i:74925301 original size:94 final size:94
Alignment explanation
Indices: 74925135--74925313 Score: 261
Period size: 94 Copynumber: 1.9 Consensus size: 94
74925125 CATACAGTGT
* * *
74925135 AATGTCGATGCCATGTCCCAGACATGGTCTTACACCGGCTTACATCACGAGGCCGATGCATGTCC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACCGGCTTACATAACGAGGCCGATGCATGTCA
*
74925200 CAAACATGTCTTACACTAGCTCTCGTCTC
66 CAAACATGTCTTACAATAGCTCTCGTCTC
* * * *
74925229 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATGTGGCTGATGCATGTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACCGGCT-TACATAACGAGGCCGATGCATGTC
*
74925293 ACAGACATGTCTTACAATAGC
65 ACAAACATGTCTTACAATAGC
74925314 ACACAATTAA
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
94 74 0.99
95 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (94 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACCGGCTTACATAACGAGGCCGATGCATGTCA
CAAACATGTCTTACAATAGCTCTCGTCTC
Found at i:74933775 original size:20 final size:21
Alignment explanation
Indices: 74933736--74933775 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
74933726 GTTTTAATGG
74933736 CCACACGAGCGTGTTGCCCTT
1 CCACACGAGCGTGTTGCCCTT
*
74933757 CCACACGGGCGTG-TGCCCT
1 CCACACGAGCGTGTTGCCCT
74933776 GCTTCAAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACGAGCGTGTTGCCCTT
Found at i:74945738 original size:17 final size:18
Alignment explanation
Indices: 74945707--74945741 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
74945697 TAAAATAATA
*
74945707 ATAAAAATAATAATTTAG
1 ATAAAAATAAGAATTTAG
74945725 ATAAAAAT-AGAATTTAG
1 ATAAAAATAAGAATTTAG
74945742 GAAAAAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (18 bp):
ATAAAAATAAGAATTTAG
Found at i:74946225 original size:10 final size:10
Alignment explanation
Indices: 74946210--74946239 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
74946200 TATAAAAATA
74946210 TTTAATATAT
1 TTTAATATAT
*
74946220 TTTAATATAA
1 TTTAATATAT
74946230 TTTAATATAT
1 TTTAATATAT
74946240 AATAATTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
TTTAATATAT
Found at i:74950194 original size:43 final size:46
Alignment explanation
Indices: 74950147--74950297 Score: 141
Period size: 48 Copynumber: 3.3 Consensus size: 46
74950137 TATAATTTCG
*
74950147 TGTAAGACCATAGCTGGG-C-T-ATCGACATCGATATATGATCCCA
1 TGTAAGACCATAGCTGGGACATGATCGACATCGACATATGATCCCA
* * * *
74950190 TGTAAGACCATATCTGGGACATGGCATTGGCATCGACCTATGATCCCA
1 TGTAAGACCATAGCTGGGACAT-G-ATCGACATCGACATATGATCCCA
* * *
74950238 TGTAAGACCAT-G-TGTAGGACATGGCATTGGCATCGACATGTGATCCCA
1 TGTAAGACCATAGCTG--GGACAT-G-ATCGACATCGACATATGATCCCA
74950286 TGTAAGACCATA
1 TGTAAGACCATA
74950298 TCCGGATATG
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
43 17 0.18
44 1 0.01
45 1 0.01
46 2 0.02
48 71 0.77
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (46 bp):
TGTAAGACCATAGCTGGGACATGATCGACATCGACATATGATCCCA
Found at i:74950238 original size:48 final size:48
Alignment explanation
Indices: 74950172--74950318 Score: 206
Period size: 48 Copynumber: 3.1 Consensus size: 48
74950162 GGGCTATCGA
* *
74950172 CATCGATATATGATCCCATGTAAGACCATATCTGGGACATGGCATTGG
1 CATCGACATATGATCCCATGTAAGACCATATCTAGGACATGGCATTGG
* * *
74950220 CATCGACCTATGATCCCATGTAAGACCATGTGTAGGACATGGCATTGG
1 CATCGACATATGATCCCATGTAAGACCATATCTAGGACATGGCATTGG
* * * *
74950268 CATCGACATGTGATCCCATGTAAGACCATATC-CGGATATGGCATTAG
1 CATCGACATATGATCCCATGTAAGACCATATCTAGGACATGGCATTGG
74950315 CATC
1 CATC
74950319 CTACCATGTG
Statistics
Matches: 87, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
47 16 0.18
48 71 0.82
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (48 bp):
CATCGACATATGATCCCATGTAAGACCATATCTAGGACATGGCATTGG
Found at i:74953567 original size:49 final size:50
Alignment explanation
Indices: 74953487--74953719 Score: 281
Period size: 49 Copynumber: 4.7 Consensus size: 50
74953477 ATCTATTGTG
* *
74953487 AGGTCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * *
74953537 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * * ** **
74953587 CGATCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
74953637 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACGGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
74953687 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
74953720 TGCGTACTAG
Statistics
Matches: 153, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 72 0.47
50 45 0.29
51 36 0.24
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:74953684 original size:101 final size:98
Alignment explanation
Indices: 74953490--74953719 Score: 289
Period size: 100 Copynumber: 2.3 Consensus size: 98
74953480 TATTGTGAGG
* ** *
74953490 TCACGTGTGTAATACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCACATGTGTAGTACT
*
74953555 AAGTGCAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCCGATAA-TT-GA
* * ** *
74953590 TCACGTATGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATT-GGTCACATGTGTAGTAC
* ** *
74953655 TAAGTGCAGGCTACTACGTGTACGGGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCCGATAATTGA
* *
74953689 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
74953720 TGCGTACTAG
Statistics
Matches: 112, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
99 29 0.26
100 42 0.38
101 41 0.37
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (98 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCCGATAATTGA
Found at i:74961459 original size:20 final size:21
Alignment explanation
Indices: 74961423--74961464 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
74961413 TGAATGGATT
74961423 TGATATGTTTTTGAAGTTTTA
1 TGATATGTTTTTGAAGTTTTA
74961444 TGATA-GTTTGTT-AAGTTTTA
1 TGATATGTTT-TTGAAGTTTTA
74961464 T
1 T
74961465 TGTTAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.24, C:0.00, G:0.19, T:0.57
Consensus pattern (21 bp):
TGATATGTTTTTGAAGTTTTA
Found at i:74974145 original size:44 final size:44
Alignment explanation
Indices: 74974062--74974146 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
74974052 ACATGTATCA
* * *
74974062 CATCCATTATAAACTCGGACCAACTCAACAAGTTTGGATGCTCG
1 CATCCATAATAAACTCGGACCAACTCAACAAGCTCGGATGCTCG
* *
74974106 CATCCATAATGAACTCGGACCAACTCAACGAGCTCGGATGC
1 CATCCATAATAAACTCGGACCAACTCAACAAGCTCGGATGC
74974147 CTCATATATA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (44 bp):
CATCCATAATAAACTCGGACCAACTCAACAAGCTCGGATGCTCG
Found at i:74975518 original size:34 final size:34
Alignment explanation
Indices: 74975480--74975549 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
74975470 TTAATATACT
74975480 TGAATCTATCTTGCTTCAGTTATATTGAATTTTA
1 TGAATCTATCTTGCTTCAGTTATATTGAATTTTA
*
74975514 TGAATCTATCTTGCTTCGGTTATATTGAATTTTA
1 TGAATCTATCTTGCTTCAGTTATATTGAATTTTA
74975548 TG
1 TG
74975550 TTGATGATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.24, C:0.11, G:0.14, T:0.50
Consensus pattern (34 bp):
TGAATCTATCTTGCTTCAGTTATATTGAATTTTA
Found at i:74981099 original size:29 final size:27
Alignment explanation
Indices: 74981081--74981150 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
74981071 ATATTAAGTC
74981081 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
74981108 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
74981136 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
74981151 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:74981144 original size:28 final size:28
Alignment explanation
Indices: 74981081--74981178 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
74981071 ATATTAAGTC
*
74981081 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
74981108 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
74981136 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
74981165 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74981179 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:74989173 original size:27 final size:26
Alignment explanation
Indices: 74989155--74989224 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
74989145 ATATTAAGTC
74989155 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
74989182 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
74989210 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
74989225 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:74989218 original size:28 final size:28
Alignment explanation
Indices: 74989155--74989252 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
74989145 ATATTAAGTC
*
74989155 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
74989182 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
74989210 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
74989239 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74989253 AAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75003403 original size:40 final size:40
Alignment explanation
Indices: 75003366--75003581 Score: 206
Period size: 40 Copynumber: 5.7 Consensus size: 40
75003356 GCTACTCGTT
* *
75003366 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
75003406 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
75003446 CAAATGCCTTCGGGACTTAACCC-G-----G--ACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
75003478 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
75003516 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75003557 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75003582 CATCATTCGA
Statistics
Matches: 150, Mismatches: 12, Indels: 28
0.79 0.06 0.15
Matches are distributed among these distances:
30 7 0.05
31 13 0.09
32 8 0.05
34 1 0.01
36 1 0.01
38 9 0.06
39 10 0.07
40 88 0.59
41 13 0.09
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75003486 original size:31 final size:31
Alignment explanation
Indices: 75003439--75003501 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
75003429 GGATTTAGTA
75003439 ACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 ACTCGCACAAATGCCTTCGGG-CTTAACCCGG
*
75003471 ACTCGCAC-AATGCCTTCGGGCTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGCTTAACCCGG
75003501 A
1 A
75003502 ATTAGTATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 10 0.33
31 12 0.40
32 8 0.27
ACGTcount: A:0.22, C:0.35, G:0.24, T:0.19
Consensus pattern (31 bp):
ACTCGCACAAATGCCTTCGGGCTTAACCCGG
Found at i:75003565 original size:110 final size:111
Alignment explanation
Indices: 75003368--75003582 Score: 285
Period size: 110 Copynumber: 1.9 Consensus size: 111
75003358 TACTCGTTCA
*
75003368 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
75003433 TTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGACTCGCAC
66 ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGACTCGCAC
* * **
75003479 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
75003541 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAC
64 ATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAACCCGGAC
75003583 ATCATTCGAA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
109 4 0.04
110 67 0.74
111 20 0.22
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (111 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCTTCGGGACTTAACCCGGACTCGCAC
Found at i:75004760 original size:44 final size:44
Alignment explanation
Indices: 75004710--75004798 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
75004700 TATTAGTTTA
75004710 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTT
*
75004754 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTT
75004798 T
1 T
75004799 CATGACATGT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.22, C:0.24, G:0.07, T:0.47
Consensus pattern (44 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTT
Found at i:75010628 original size:40 final size:40
Alignment explanation
Indices: 75010584--75010848 Score: 324
Period size: 40 Copynumber: 6.7 Consensus size: 40
75010574 GCTACTCGTT
* *
75010584 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCTCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
75010624 CAAATGCATTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
75010664 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
75010704 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
75010744 TC-AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 -CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
75010783 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
75010824 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75010849 CATCATTCGA
Statistics
Matches: 198, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
38 3 0.02
39 29 0.15
40 152 0.77
41 14 0.07
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:75010809 original size:79 final size:79
Alignment explanation
Indices: 75010551--75010848 Score: 329
Period size: 80 Copynumber: 3.7 Consensus size: 79
75010541 AAATCACGTA
* * * ** *
75010551 CCTTCGGAATTTAACCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATA
1 CCTTCGGGACTTAACCGGATTTAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TA
*
75010614 GTAACTCTCACAAATG
64 GTAACTCGCACAAATG
* *
75010630 CATTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAG
1 CCTTCGGGACTTAA-CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAG
75010695 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
75010710 CCTTCGGGACTTAACTCGGATTTAGTAACTCGGATC-AATGCCTTCGGG-CTTAGCCCGGAATTA
1 CCTTCGGGACTTAAC-CGGATTTAGTAACTCGCA-CAAATGCCTTCGGGACTTAGCCCGGATTTA
*
75010773 GTATCTCGCACAAATG
64 GTAACTCGCACAAATG
* * * * *
75010789 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
75010849 CATCATTCGA
Statistics
Matches: 189, Mismatches: 20, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.02
79 70 0.37
80 113 0.60
81 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGT
AACTCGCACAAATG
Found at i:75010833 original size:119 final size:120
Alignment explanation
Indices: 75010584--75010841 Score: 310
Period size: 119 Copynumber: 2.2 Consensus size: 120
75010574 GCTACTCGTT
* * * **
75010584 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCTCA-CAAATGCATTCGGGACTTAACCC
1 CAAATGCCTTCGGGACTTAACTCGGATT-TAGTAACTCGGATC-AATGCATTCGGGACTTAACCC
* * *
75010647 GGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
64 GGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
* *
75010704 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGGATCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGGATCAATGCATTCGGGACTTAACCCGG
* ** * *
75010768 AATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
66 AATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCA
75010824 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
75010842 GCCCGGACAT
Statistics
Matches: 119, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
118 3 0.03
119 62 0.52
120 51 0.43
121 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACTTAACTCGGATTTAGTAACTCGGATCAATGCATTCGGGACTTAACCCGG
AATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
Found at i:75012620 original size:7 final size:7
Alignment explanation
Indices: 75012610--75012670 Score: 54
Period size: 7 Copynumber: 8.9 Consensus size: 7
75012600 TTGGGGATAT
75012610 GGTTTAG
1 GGTTTAG
75012617 GGTTTAG
1 GGTTTAG
*
75012624 GGTTTAT
1 GGTTTAG
**
75012631 AATTTAG
1 GGTTTAG
*
75012638 GG-AT-G
1 GGTTTAG
*
75012643 GGCTTAG
1 GGTTTAG
75012650 GGTTTAG
1 GGTTTAG
75012657 GGTTTTAG
1 GG-TTTAG
75012665 GGTTTA
1 GGTTTA
75012671 AAGTATAATT
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
5 3 0.07
6 2 0.05
7 30 0.71
8 7 0.17
ACGTcount: A:0.18, C:0.02, G:0.38, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Found at i:75012719 original size:15 final size:15
Alignment explanation
Indices: 75012699--75012728 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
75012689 TAATTTAGAC
75012699 GATAAATATAAATAA
1 GATAAATATAAATAA
*
75012714 GATAAATATATATAA
1 GATAAATATAAATAA
75012729 ATTATTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
GATAAATATAAATAA
Found at i:75013596 original size:45 final size:44
Alignment explanation
Indices: 75013547--75013631 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
75013537 GCTCCTCTAA
75013547 TTCCCCAAACTCGAAATCCCTAACATTTTCCCCAAATCCCCTATT
1 TTCCCCAAACTC-AAATCCCTAACATTTTCCCCAAATCCCCTATT
* * **
75013592 TTCCCCATAGTCATTTCCCTAACATTTTCCCCAAATCCCC
1 TTCCCCAAACTCAAATCCCTAACATTTTCCCCAAATCCCC
75013632 CCATGTTCCC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 26 0.72
45 10 0.28
ACGTcount: A:0.26, C:0.41, G:0.02, T:0.31
Consensus pattern (44 bp):
TTCCCCAAACTCAAATCCCTAACATTTTCCCCAAATCCCCTATT
Found at i:75013656 original size:45 final size:44
Alignment explanation
Indices: 75013563--75013658 Score: 138
Period size: 45 Copynumber: 2.2 Consensus size: 44
75013553 AAACTCGAAA
* * *
75013563 TCCCTAACATTTTCCCCAAATCCCCTATTTTCCCCATAGTCATT
1 TCCCTAACATTTTCCCCAAATCCCCCATGTTCCCCATACTCATT
**
75013607 TCCCTAACATTTTCCCCAAATCCCCCCATGTTCCCCATACTTTTT
1 TCCCTAACATTTTCCCCAAAT-CCCCCATGTTCCCCATACTCATT
75013652 TCCCTAA
1 TCCCTAA
75013659 ATCTGTTCCC
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 21 0.46
45 25 0.54
ACGTcount: A:0.22, C:0.41, G:0.02, T:0.35
Consensus pattern (44 bp):
TCCCTAACATTTTCCCCAAATCCCCCATGTTCCCCATACTCATT
Found at i:75016889 original size:106 final size:106
Alignment explanation
Indices: 75016620--75017390 Score: 1202
Period size: 106 Copynumber: 7.3 Consensus size: 106
75016610 TTAAATATTC
* * * *
75016620 TATTTT-ATTTTTAAATTACCTAATTAAACTAAATTATATTTAAAGTTTTATTTTGAATATGTTA
1 TATTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTA
* *
75016684 TTTTATTTT-ATCTTAATCACGAAAAATATTTTGTCTACTTT
66 TTTGATTTTAAT-TTAATCACTAAAAATATTTTGTCTACTTT
* *
75016725 TATTTT-ATTTTTAAACTACCTAATTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTTTA
1 TATTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTA
*
75016789 TTTGATTTTAATTTAATCACTAAAAATGTTTTGTCTACTTT
66 TTTGATTTTAATTTAATCACTAAAAATATTTTGTCTACTTT
75016830 TATTTTAATTTTTAAATTATCC-AATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTT
1 TATTTTAATTTTTAAATTA-CCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTT
* * * *
75016894 ATTTTATTTTATTTTTATCAC-AAAAAAATATTT-TCTACTTT
65 ATTTGATTTTAATTTAATCACTAAAAATAT-TTTGTCTACTTT
*
75016935 TA-TTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAATTTTTATTTTAAATATTTTA
1 TATTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTA
* *
75016999 TTTGATTTTAATTTAATCACTATAAATATTTTATCTACTTT
66 TTTGATTTTAATTTAATCACTAAAAATATTTTGTCTACTTT
*
75017040 TATTTTAATTTTTAAATTATCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTA
1 TATTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTA
**
75017105 TTTGATTTTAATTTAATCACTAAAAACGTTTTGTCTACTTT
66 TTTGATTTTAATTTAATCACTAAAAATATTTTGTCTACTTT
* * *
75017146 TATTTTAATTTTTAAATTACCTAATTAAACTAAATTGTATTTAAAGTTTTATTTTGAATATGTTA
1 TATTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTA
* * * *
75017211 TTTTATTTTATTTTAATCTCGAAAAATA--TTGTCTACTTT
66 TTTGATTTTAATTTAATCACTAAAAATATTTTGTCTACTTT
75017250 TATTTT-ATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTA
1 TATTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTA
75017314 TTTGATTTTAATTTAATCACTAAAAATATTTTGTCTACTTT
66 TTTGATTTTAATTTAATCACTAAAAATATTTTGTCTACTTT
*
75017355 TATTTTAATTTTTAAATTATCTAATTAAATTAAATT
1 TATTTTAATTTTTAAATTACCTAATTAAATTAAATT
75017391 ATTTTTTTAA
Statistics
Matches: 611, Mismatches: 44, Indels: 21
0.90 0.07 0.03
Matches are distributed among these distances:
103 81 0.13
104 95 0.16
105 150 0.25
106 283 0.46
107 2 0.00
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (106 bp):
TATTTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTA
TTTGATTTTAATTTAATCACTAAAAATATTTTGTCTACTTT
Found at i:75016986 original size:210 final size:210
Alignment explanation
Indices: 75016620--75017390 Score: 1178
Period size: 210 Copynumber: 3.7 Consensus size: 210
75016610 TTAAATATTC
* * * *
75016620 TATTTTATTTTTAAATTACCTAATTAAACTAAATTATATTTAAAGTTTTATTTTGAATATGTTAT
1 TATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAT
* * *
75016685 TTTATTTT-ATCTTAATCACGAAAAATATTTTGTCTACTTTTATTTT-ATTTTTAAACTACCTAA
66 TTGATTTTAAT-TTAATCACAAAAAATATTTTGTCTACTTTTATTTTAATTTTTAAATTACCTAA
*
75016748 TTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACTAAA
130 TTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACTAAA
75016813 AATGTTTTGTCTACTTT
195 AAT-TTTTGTCTACTTT
75016830 TATTTTAATTTTTAAATTATCC-AATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTT
1 TATTTT-ATTTTTAAATTA-CCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTT
* * *
75016894 ATTTTATTTTATTTTTATCACAAAAAA-ATATTT-TCTACTTTTA-TTTAATTTTTAAATTACCT
64 ATTTGATTTTAATTTAATCACAAAAAATAT-TTTGTCTACTTTTATTTTAATTTTTAAATTACCT
*
75016956 AATTAAATTAAATTGTATTTAAATTTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACTA
128 AATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACTA
* *
75017021 TAAATATTTTATCTACTTT
193 AAAAT-TTTTGTCTACTTT
*
75017040 TATTTTAATTTTTAAATTATCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTA
1 TATTTT-ATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTA
* **
75017105 TTTGATTTTAATTTAATCACTAAAAACGTTTTGTCTACTTTTATTTTAATTTTTAAATTACCTAA
65 TTTGATTTTAATTTAATCACAAAAAATATTTTGTCTACTTTTATTTTAATTTTTAAATTACCTAA
* * * * * * *
75017170 TTAAACTAAATTGTATTTAAAGTTTTATTTTGAATATGTTATTTTATTTTATTTTAATCTCGAAA
130 TTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACTAAA
*
75017235 AA-TATTGTCTACTTT
195 AATTTTTGTCTACTTT
75017250 TATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAT
1 TATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAT
* *
75017315 TTGATTTTAATTTAATCACTAAAAATATTTTGTCTACTTTTATTTTAATTTTTAAATTATCTAAT
66 TTGATTTTAATTTAATCACAAAAAATATTTTGTCTACTTTTATTTTAATTTTTAAATTACCTAAT
75017380 TAAATTAAATT
131 TAAATTAAATT
75017391 ATTTTTTTAA
Statistics
Matches: 517, Mismatches: 35, Indels: 19
0.91 0.06 0.03
Matches are distributed among these distances:
209 134 0.26
210 215 0.42
211 86 0.17
212 82 0.16
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (210 bp):
TATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAT
TTGATTTTAATTTAATCACAAAAAATATTTTGTCTACTTTTATTTTAATTTTTAAATTACCTAAT
TAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACTAAAA
ATTTTTGTCTACTTT
Done.