Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 229 of 325
Found at i:75016991 original size:13 final size:14
Alignment explanation
Indices: 75016973--75017001 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
75016963 TTAAATTGTA
75016973 TTTAAAT-TTTTAT
1 TTTAAATATTTTAT
75016986 TTTAAATATTTTAT
1 TTTAAATATTTTAT
75017000 TT
1 TT
75017002 GATTTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTAAATATTTTAT
Found at i:75017013 original size:37 final size:36
Alignment explanation
Indices: 75016971--75017120 Score: 94
Period size: 37 Copynumber: 4.2 Consensus size: 36
75016961 AATTAAATTG
75016971 TATTTAAATTTTTATTTTAAATATTTTATTTGATTT
1 TATTTAAATTTTTATTTTAAATATTTTATTTGATTT
* * * *
75017007 TAATTT-AA---TCACTATAAATATTTTATCT-ACTTT
1 T-ATTTAAATTTTTATTTTAAATATTTTATTTGA-TTT
* ** ** ** ** *
75017040 TATTTTAATTTTTAAATTATCTAATTAAATTAAATTG
1 TATTTAAATTTTTATTTTAAAT-ATTTTATTTGATTT
*
75017077 TATTTAAAGTTTTATTTTAAATATTTTATTTGATTT
1 TATTTAAATTTTTATTTTAAATATTTTATTTGATTT
75017113 TAATTTAA
1 T-ATTTAA
75017121 TCACTAAAAA
Statistics
Matches: 79, Mismatches: 26, Indels: 17
0.65 0.21 0.14
Matches are distributed among these distances:
32 5 0.06
33 22 0.28
36 18 0.23
37 33 0.42
38 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (36 bp):
TATTTAAATTTTTATTTTAAATATTTTATTTGATTT
Found at i:75017017 original size:315 final size:315
Alignment explanation
Indices: 75016620--75017392 Score: 1309
Period size: 315 Copynumber: 2.5 Consensus size: 315
75016610 TTAAATATTC
* * * *
75016620 TATTTTATTTTTAAATTACCTAATTAAACTAAATTATATTTAAAGTTTTATTTTGAATATGTTAT
1 TATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAT
* * * *
75016685 TTTATTTT-ATCTTAATCACGAAAAATATTTTGTCTACTTTTATTTT-ATTTTTAAACTACCTAA
66 TTGATTTTAAT-TTAATCACTAAAAATATTTTGTCTACTTTTATTTTAATTTTTAAATTATCTAA
75016748 TTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACTAAA
130 TTAAATTAAATTATATTTAAAGTTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACTAAA
* *
75016813 AATGTTTTGTCTACTTTTATTTTAATTTTTAAATTATCC-AATTAAATTAAATTGTATTTAAAGT
195 AACGTTTTGTCTACTTTTATTTTAATTTTTAAATTA-CCTAATTAAACTAAATTGTATTTAAAGT
* * *
75016877 TTTATTTTAAATATTTTATTTTATTTTATTTTTATCACAAAAAAATATTTTCTACTTT
259 TTTATTTTAAATATGTTATTTTATTTTATTTTAATCAC-AAAAAATATTGTCTACTTT
* *
75016935 TATTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAATTTTTATTTTAAATATTTTAT
1 TATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAT
* *
75017000 TTGATTTTAATTTAATCACTATAAATATTTTATCTACTTTTATTTTAATTTTTAAATTATCTAAT
66 TTGATTTTAATTTAATCACTAAAAATATTTTGTCTACTTTTATTTTAATTTTTAAATTATCTAAT
*
75017065 TAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACTAAAA
131 TAAATTAAATTATATTTAAAGTTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACTAAAA
75017130 ACGTTTTGTCTACTTTTATTTTAATTTTTAAATTACCTAATTAAACTAAATTGTATTTAAAGTTT
196 ACGTTTTGTCTACTTTTATTTTAATTTTTAAATTACCTAATTAAACTAAATTGTATTTAAAGTTT
* * *
75017195 TATTTTGAATATGTTATTTTATTTTATTTTAATCTCGAAAAATATTGTCTACTTT
261 TATTTTAAATATGTTATTTTATTTTATTTTAATCACAAAAAATATTGTCTACTTT
75017250 TATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAT
1 TATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAT
75017315 TTGATTTTAATTTAATCACTAAAAATATTTTGTCTACTTTTATTTTAATTTTTAAATTATCTAAT
66 TTGATTTTAATTTAATCACTAAAAATATTTTGTCTACTTTTATTTTAATTTTTAAATTATCTAAT
75017380 TAAATTAAATTAT
131 TAAATTAAATTAT
75017393 TTTTTTAAAT
Statistics
Matches: 429, Mismatches: 26, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
315 255 0.59
316 174 0.41
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (315 bp):
TATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTTTAT
TTGATTTTAATTTAATCACTAAAAATATTTTGTCTACTTTTATTTTAATTTTTAAATTATCTAAT
TAAATTAAATTATATTTAAAGTTTTATTTTAAATATTTTATTTGATTTTAATTTAATCACTAAAA
ACGTTTTGTCTACTTTTATTTTAATTTTTAAATTACCTAATTAAACTAAATTGTATTTAAAGTTT
TATTTTAAATATGTTATTTTATTTTATTTTAATCACAAAAAATATTGTCTACTTT
Found at i:75017687 original size:18 final size:18
Alignment explanation
Indices: 75017661--75017954 Score: 105
Period size: 18 Copynumber: 16.5 Consensus size: 18
75017651 AAATATATAT
*
75017661 CATATCTTACATAATTTA
1 CATAACTTACATAATTTA
75017679 CATAACTTACATAA--TA
1 CATAACTTACATAATTTA
* * *
75017695 CATAAATT-TAT-ATAT-
1 CATAACTTACATAATTTA
*
75017710 CATATCTTACATAATTTA
1 CATAACTTACATAATTTA
** * * *
75017728 CATAAGATAAACAACTTA
1 CATAACTTACATAATTTA
* *
75017746 CATAATTTACATAACTTA
1 CATAACTTACATAATTTA
*
75017764 CATAA--TACAGAAGTATATA
1 CATAACTTACATAA-T-T-TA
*
75017783 TCATATCTTACATAATTTA
1 -CATAACTTACATAATTTA
* * * *
75017802 CATAAGATGA-ACAATTTG
1 CATAA-CTTACATAATTTA
* *
75017820 CATAATTTACATAACTTA
1 CATAACTTACATAATTTA
75017838 CATAA--TACATAGATATATA
1 CATAACTTACATA-AT-T-TA
* *
75017857 TCATATCGTACATAATTTA
1 -CATAACTTACATAATTTA
* *
75017876 CATAA-TTCCGATAACTTA
1 CATAACTTAC-ATAATTTA
*
75017894 CATAATTTACAT-ATCTTA
1 CATAACTTACATAAT-TTA
*
75017912 CATAA--TACATAA-ATA
1 CATAACTTACATAATTTA
* * * *
75017927 TATATCATATCATAACTTA
1 CATAACTTA-CATAATTTA
75017946 CATAACTTA
1 CATAACTTA
75017955 GTTATACTTA
Statistics
Matches: 203, Mismatches: 46, Indels: 53
0.67 0.15 0.18
Matches are distributed among these distances:
14 1 0.00
15 13 0.06
16 29 0.14
17 12 0.06
18 102 0.50
19 21 0.10
20 10 0.05
21 3 0.01
22 12 0.06
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (18 bp):
CATAACTTACATAATTTA
Found at i:75017692 original size:9 final size:9
Alignment explanation
Indices: 75017661--75017954 Score: 87
Period size: 9 Copynumber: 33.0 Consensus size: 9
75017651 AAATATATAT
*
75017661 CATATCTTA
1 CATAACTTA
*
75017670 CATAATTTA
1 CATAACTTA
75017679 CATAACTTA
1 CATAACTTA
75017688 CATAA--TA
1 CATAACTTA
*
75017695 CATAAATT-
1 CATAACTTA
*
75017703 TAT-A--TA
1 CATAACTTA
*
75017709 TCATATCTTA
1 -CATAACTTA
*
75017719 CATAATTTA
1 CATAACTTA
**
75017728 CATAAGATA
1 CATAACTTA
* *
75017737 AACAACTTA
1 CATAACTTA
*
75017746 CATAATTTA
1 CATAACTTA
75017755 CATAACTTA
1 CATAACTTA
75017764 CATAA--TA
1 CATAACTTA
* *
75017771 CAGAAGTATATA
1 CATAA--CT-TA
*
75017783 TCATATCTTA
1 -CATAACTTA
*
75017793 CATAATTTA
1 CATAACTTA
* *
75017802 CATAAGATGA
1 CATAA-CTTA
* * *
75017812 -ACAATTTG
1 CATAACTTA
*
75017820 CATAATTTA
1 CATAACTTA
75017829 CATAACTTA
1 CATAACTTA
75017838 CATAA--TA
1 CATAACTTA
*
75017845 CATAGATATATA
1 CATA-A-CT-TA
* *
75017857 TCATATCGTA
1 -CATAACTTA
*
75017867 CATAATTTA
1 CATAACTTA
*
75017876 CATAA-TTC
1 CATAACTTA
75017884 CGATAACTTA
1 C-ATAACTTA
*
75017894 CATAATTTA
1 CATAACTTA
*
75017903 CATATCTTA
1 CATAACTTA
75017912 CATAA--TA
1 CATAACTTA
*
75017919 CATAA-ATA
1 CATAACTTA
* * *
75017927 TATATCATA
1 CATAACTTA
75017936 TCATAACTTA
1 -CATAACTTA
75017946 CATAACTTA
1 CATAACTTA
75017955 GTTATACTTA
Statistics
Matches: 209, Mismatches: 50, Indels: 52
0.67 0.16 0.17
Matches are distributed among these distances:
5 1 0.00
7 29 0.14
8 12 0.06
9 138 0.66
10 17 0.08
11 1 0.00
12 4 0.02
13 7 0.03
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (9 bp):
CATAACTTA
Found at i:75017815 original size:74 final size:73
Alignment explanation
Indices: 75017666--75017937 Score: 368
Period size: 74 Copynumber: 3.6 Consensus size: 73
75017656 TATATCATAT
*
75017666 CTTACATAATTTACATAACTTACATAATACATAAATTTATATATCATATCTTACATAATTTACAT
1 CTTACATAATTTACATAACTTACATAATAC--AAA-GTATATATCATATCTTACATAATTTACAT
*
75017731 AAGATAAACAA
63 AAGATGAACAA
75017742 CTTACATAATTTACATAACTTACATAATACAGAAGTATATATCATATCTTACATAATTTACATAA
1 CTTACATAATTTACATAACTTACATAATACA-AAGTATATATCATATCTTACATAATTTACATAA
75017807 GATGAACAA
65 GATGAACAA
* * * *
75017816 TTTGCATAATTTACATAACTTACATAATACATAGATATATATCATATCGTACATAATTTACATAA
1 CTTACATAATTTACATAACTTACATAATACAAAG-TATATATCATATCTTACATAATTTACATAA
* *
75017881 -TTCCG-ATAA
65 GAT--GAACAA
* *
75017890 CTTACATAATTTACATATCTTACATAATACATAAATATATATCATATC
1 CTTACATAATTTACATAACTTACATAATACA-AAGTATATATCATATC
75017938 ATAACTTACA
Statistics
Matches: 178, Mismatches: 13, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
73 3 0.02
74 141 0.79
75 4 0.02
76 30 0.17
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.37
Consensus pattern (73 bp):
CTTACATAATTTACATAACTTACATAATACAAAGTATATATCATATCTTACATAATTTACATAAG
ATGAACAA
Found at i:75022007 original size:47 final size:47
Alignment explanation
Indices: 75021953--75022222 Score: 398
Period size: 47 Copynumber: 5.7 Consensus size: 47
75021943 TTAGGATTCT
* * * * *
75021953 ATGTGATGGATGTGAACA-TGCATATATGAGCTAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
75022000 ATGTGATGAATGTGAAACTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
75022047 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
75022094 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
75022141 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
75022188 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
75022223 TCCCGAAGGG
Statistics
Matches: 206, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 205 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:75022397 original size:37 final size:37
Alignment explanation
Indices: 75022341--75022419 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
75022331 CCGAGCTCTA
* * *
75022341 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
75022378 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
75022415 AAGAC
1 AAGAC
75022420 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:75027089 original size:21 final size:21
Alignment explanation
Indices: 75027062--75027169 Score: 87
Period size: 21 Copynumber: 5.1 Consensus size: 21
75027052 ACTTAGAGCG
*
75027062 GAGGCAGCAGAGATGGAGGCA
1 GAGGCAGCAGAGAGGGAGGCA
*
75027083 GCGGCAGCA-ACGAGGGAGGCA
1 GAGGCAGCAGA-GAGGGAGGCA
* * * * *
75027104 GCGACAGCAGTGAAGGAGGTA
1 GAGGCAGCAGAGAGGGAGGCA
*
75027125 GAGGCA-CGAGCGAGGGAGGCA
1 GAGGCAGC-AGAGAGGGAGGCA
*
75027146 GAGGCAGCAGCGAGGGCA-GCA
1 GAGGCAGCAGAGAGGG-AGGCA
75027167 GAG
1 GAG
75027170 CAGAGCAAAA
Statistics
Matches: 71, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
20 2 0.03
21 67 0.94
22 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.48, T:0.03
Consensus pattern (21 bp):
GAGGCAGCAGAGAGGGAGGCA
Found at i:75027425 original size:32 final size:31
Alignment explanation
Indices: 75027389--75027463 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
75027379 TTAGAATTAA
* *
75027389 TGTTTTTGGTTGTATTTTTATGCTAAATTTGC
1 TGTTTTTGGTTGCA-TTTTATACTAAATTTGC
* * *
75027421 TGTTTTTGGCTGCATTTTATACTATATTTGT
1 TGTTTTTGGTTGCATTTTATACTAAATTTGC
*
75027452 TGTATTTGGTTG
1 TGTTTTTGGTTG
75027464 GAATTTAATG
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 24 0.67
32 12 0.33
ACGTcount: A:0.15, C:0.07, G:0.20, T:0.59
Consensus pattern (31 bp):
TGTTTTTGGTTGCATTTTATACTAAATTTGC
Found at i:75027571 original size:43 final size:42
Alignment explanation
Indices: 75027524--75027622 Score: 101
Period size: 43 Copynumber: 2.3 Consensus size: 42
75027514 TCTGTCAAAA
* * **
75027524 TTAGCGGCGTTTGTGGGAA-AAACGCCACTAAAAGGCATGGCTT
1 TTAGCGGCGTTT-T-GCAACAAACGCCACTAAAAGCCATAACTT
* * *
75027567 TTAGCGGTGCTTTTTCAACAAACGCCGCTAAAAGCCATAACTT
1 TTAGCGGCG-TTTTGCAACAAACGCCACTAAAAGCCATAACTT
75027610 TTAGCGGCGTTTT
1 TTAGCGGCGTTTT
75027623 TTTTAAATAA
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
42 6 0.13
43 37 0.80
44 3 0.07
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.28
Consensus pattern (42 bp):
TTAGCGGCGTTTTGCAACAAACGCCACTAAAAGCCATAACTT
Found at i:75027624 original size:43 final size:43
Alignment explanation
Indices: 75027543--75027624 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
75027533 TTTGTGGGAA
* ** *
75027543 AAACGCCACTAAAAGGCATGGCTTTTAGCGGTGCTTTTTCAAC
1 AAACGCCACTAAAAGCCATAACTTTTAGCGGCGCTTTTTCAAC
* *
75027586 AAACGCCGCTAAAAGCCATAACTTTTAGCGGCGTTTTTT
1 AAACGCCACTAAAAGCCATAACTTTTAGCGGCGCTTTTT
75027625 TTAAATAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (43 bp):
AAACGCCACTAAAAGCCATAACTTTTAGCGGCGCTTTTTCAAC
Found at i:75028082 original size:21 final size:21
Alignment explanation
Indices: 75028056--75028098 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
75028046 ATTATTTTAG
75028056 AGTAAGATTTGAGTACTGAGA
1 AGTAAGATTTGAGTACTGAGA
75028077 AGTAAGATTTGAGTACTGAGA
1 AGTAAGATTTGAGTACTGAGA
75028098 A
1 A
75028099 ACTCTAGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.05, G:0.28, T:0.28
Consensus pattern (21 bp):
AGTAAGATTTGAGTACTGAGA
Found at i:75037580 original size:50 final size:50
Alignment explanation
Indices: 75037340--75037570 Score: 268
Period size: 50 Copynumber: 4.6 Consensus size: 50
75037330 CTGGTACATA
* * * *
75037340 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATTTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTAGTACACG
* * * *
75037390 TAGTAGCCTGCACTTTGTACTACACACGTGAACTAACCATCT-GATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTAG-TACACG
* * * * * *
75037440 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAACCTATCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CAATCTAGTACACG
* **
75037491 TAGTAGCCTGCAGTTAGTACTACACATGCAACCTAACAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTAGTACACG
75037541 TAGTAGCCTGCACTTAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
75037571 TTCTCACAAT
Statistics
Matches: 151, Mismatches: 25, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
49 2 0.01
50 110 0.73
51 37 0.25
52 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTAGTACACG
Found at i:75037734 original size:13 final size:13
Alignment explanation
Indices: 75037716--75037742 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
75037706 GCTACATCTC
75037716 ATATAATAACAAA
1 ATATAATAACAAA
75037729 ATATAATAACAAA
1 ATATAATAACAAA
75037742 A
1 A
75037743 AAAAAGAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.22
Consensus pattern (13 bp):
ATATAATAACAAA
Found at i:75055438 original size:58 final size:58
Alignment explanation
Indices: 75055348--75055464 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
75055338 ATGAGTGCGA
*
75055348 GTAAGTCCATGGCATCAATTTGTGATTTCGATATGTGTTTATGAGTAAGACCCTGTCT
1 GTAAGTCCATGGCATCAATTTGTGATTTCGATATGTGTTTATGAGTAAAACCCTGTCT
75055406 GTAAGTCCATGGCATCAATTTGTGATTTCGATATGTGTTTATGAGTAAAACCCTGTCT
1 GTAAGTCCATGGCATCAATTTGTGATTTCGATATGTGTTTATGAGTAAAACCCTGTCT
75055464 G
1 G
75055465 GGACAATGGC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (58 bp):
GTAAGTCCATGGCATCAATTTGTGATTTCGATATGTGTTTATGAGTAAAACCCTGTCT
Found at i:75057192 original size:59 final size:59
Alignment explanation
Indices: 75057100--75057221 Score: 244
Period size: 59 Copynumber: 2.1 Consensus size: 59
75057090 TAGCTTGTGA
75057100 TAGTCGAATAGCTATAGAATGGAACAGATTTTCTTTGTATATTCCTAAATGTTTGACTT
1 TAGTCGAATAGCTATAGAATGGAACAGATTTTCTTTGTATATTCCTAAATGTTTGACTT
75057159 TAGTCGAATAGCTATAGAATGGAACAGATTTTCTTTGTATATTCCTAAATGTTTGACTT
1 TAGTCGAATAGCTATAGAATGGAACAGATTTTCTTTGTATATTCCTAAATGTTTGACTT
75057218 TAGT
1 TAGT
75057222 TTGTGTAATT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 63 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (59 bp):
TAGTCGAATAGCTATAGAATGGAACAGATTTTCTTTGTATATTCCTAAATGTTTGACTT
Found at i:75066093 original size:11 final size:11
Alignment explanation
Indices: 75066075--75066141 Score: 57
Period size: 12 Copynumber: 5.8 Consensus size: 11
75066065 CTTCAAAAAT
75066075 AAATAAAA-GA
1 AAATAAAATGA
75066085 AAGATAAAATGA
1 AA-ATAAAATGA
75066097 AAATAAATAT-A
1 AAATAAA-ATGA
*
75066108 AATATAAAAATAA
1 AA-AT-AAAATGA
*
75066121 AAATAAAAATAA
1 AAAT-AAAATGA
75066133 AAATAAAAT
1 AAATAAAAT
75066142 AGATGGACTC
Statistics
Matches: 51, Mismatches: 0, Indels: 11
0.82 0.00 0.18
Matches are distributed among these distances:
10 2 0.04
11 19 0.37
12 24 0.47
13 6 0.12
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.19
Consensus pattern (11 bp):
AAATAAAATGA
Found at i:75066108 original size:6 final size:6
Alignment explanation
Indices: 75066090--75066140 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
75066080 AAAGAAAGAT
* * *
75066090 AAAATG AAAATA AATATA AATATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
75066138 AAA
1 AAA
75066141 TAGATGGACT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:75067978 original size:15 final size:14
Alignment explanation
Indices: 75067958--75068021 Score: 60
Period size: 15 Copynumber: 4.4 Consensus size: 14
75067948 AGAAGAAAGG
75067958 GAAAGAAGGAGAAAA
1 GAAAGAA-GAGAAAA
*
75067973 GAAAGAA-AGAAGCGA
1 GAAAGAAGAGAA--AA
75067988 GAAAGAA-AGAAAAA
1 GAAAGAAGAG-AAAA
75068002 GAAAGTAAGAGAAAA
1 GAAAG-AAGAGAAAA
75068017 GAAAG
1 GAAAG
75068022 GGAAGGGGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
13 4 0.10
14 6 0.14
15 28 0.67
16 4 0.10
ACGTcount: A:0.67, C:0.02, G:0.30, T:0.02
Consensus pattern (14 bp):
GAAAGAAGAGAAAA
Found at i:75067980 original size:19 final size:19
Alignment explanation
Indices: 75067958--75067999 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
75067948 AGAAGAAAGG
75067958 GAAAGAAG-GAGAAAAGAAA
1 GAAAGAAGCGAG-AAAGAAA
75067977 GAAAGAAGCGAGAAAGAAA
1 GAAAGAAGCGAGAAAGAAA
75067996 GAAA
1 GAAA
75068000 AAGAAAGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 19 0.86
20 3 0.14
ACGTcount: A:0.67, C:0.02, G:0.31, T:0.00
Consensus pattern (19 bp):
GAAAGAAGCGAGAAAGAAA
Found at i:75068002 original size:25 final size:25
Alignment explanation
Indices: 75067974--75068021 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
75067964 AGGAGAAAAG
*
75067974 AAAGAAAG-AAGCGAGAAAGAAAGAA
1 AAAGAAAGTAAGAGA-AAAGAAAGAA
75067999 AAAGAAAGTAAGAGAAAAGAAAG
1 AAAGAAAGTAAGAGAAAAGAAAG
75068022 GGAAGGGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.69, C:0.02, G:0.27, T:0.02
Consensus pattern (25 bp):
AAAGAAAGTAAGAGAAAAGAAAGAA
Found at i:75080020 original size:42 final size:43
Alignment explanation
Indices: 75079974--75080059 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 43
75079964 ATTTATATAC
75079974 CACACGGCCTAGACACAAGCCCATGTCCT-TACCTGTGTGGTT
1 CACACGGCCTAGACACAAGCCCATGTCCTCTACCTGTGTGGTT
* * ** * *
75080016 CACACGGCTTGGACACTTGCCTATGTCCTCTGCCTGTGTGGTT
1 CACACGGCCTAGACACAAGCCCATGTCCTCTACCTGTGTGGTT
75080059 C
1 C
75080060 CAGAACATAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 24 0.65
43 13 0.35
ACGTcount: A:0.16, C:0.33, G:0.23, T:0.28
Consensus pattern (43 bp):
CACACGGCCTAGACACAAGCCCATGTCCTCTACCTGTGTGGTT
Found at i:75084007 original size:4 final size:4
Alignment explanation
Indices: 75083998--75084028 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
75083988 ATACACAAAT
75083998 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
75084029 TTGCAACTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:75097247 original size:41 final size:41
Alignment explanation
Indices: 75097177--75097402 Score: 152
Period size: 41 Copynumber: 5.2 Consensus size: 41
75097167 ATGCTATCTC
* * *
75097177 ATACTGATGCC-ACTGTCCCAAACAGGGTCTTACACGAATCGA
1 ATAC-GATGCCGA-TGTCCCAAACATGGTCTTACACAAATCAA
* *
75097219 ATACGATGTCGATGTCCCAGACATGGTCTTACACAAATCAA
1 ATACGATGCCGATGTCCCAAACATGGTCTTACACAAATCAA
* ** *
75097260 ATATGATGCCGATGTCCCAAACATGGTCTTACGTAACCA-CAT
1 ATACGATGCCGATGTCCCAAACATGGTCTTACACAA--ATCAA
* * *
75097302 ATATCGATGCCAACGTCCCAGAA-GTGGTCTTACACGAAATCACA
1 ATA-CGATGCCGATGTCCCA-AACATGGTCTTACAC-AAATCA-A
* * * * *
75097346 TATATCGATGCCAACGTTCCAGACGTGGTCTTACACGAAATCACA
1 -ATA-CGATGCCGATGTCCCAAACATGGTCTTACAC-AAATCA-A
75097391 TATATCGATGCC
1 -ATA-CGATGCC
75097403 AACATCTCAG
Statistics
Matches: 154, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
41 61 0.40
42 11 0.07
43 25 0.16
44 5 0.03
45 52 0.34
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (41 bp):
ATACGATGCCGATGTCCCAAACATGGTCTTACACAAATCAA
Found at i:75097356 original size:45 final size:45
Alignment explanation
Indices: 75097232--75097443 Score: 251
Period size: 45 Copynumber: 4.8 Consensus size: 45
75097222 CGATGTCGAT
* *
75097232 GTCCCAGACA-TGGTCTTACAC-AAATCA-A-ATAT-GATGCCGAT
1 GTCCCAGA-AGTGGTCTTACACGAAATCACATATATCGATGCCAAC
* * *
75097273 GTCCCA-AACATGGTCTT--ACGTAACCACATATATCGATGCCAAC
1 GTCCCAGAA-GTGGTCTTACACGAAATCACATATATCGATGCCAAC
75097316 GTCCCAGAAGTGGTCTTACACGAAATCACATATATCGATGCCAAC
1 GTCCCAGAAGTGGTCTTACACGAAATCACATATATCGATGCCAAC
* *
75097361 GTTCCAGACGTGGTCTTACACGAAATCACATATATCGATGCCAAC
1 GTCCCAGAAGTGGTCTTACACGAAATCACATATATCGATGCCAAC
* * * *
75097406 ATCTCAGACGTGGTCTTACACGAAATCACCTATATCGA
1 GTCCCAGAAGTGGTCTTACACGAAATCACATATATCGA
75097444 AATCCTATGG
Statistics
Matches: 149, Mismatches: 13, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
39 3 0.02
40 5 0.03
41 14 0.09
42 4 0.03
43 20 0.13
44 2 0.01
45 101 0.68
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (45 bp):
GTCCCAGAAGTGGTCTTACACGAAATCACATATATCGATGCCAAC
Found at i:75105101 original size:41 final size:41
Alignment explanation
Indices: 75105052--75105144 Score: 136
Period size: 41 Copynumber: 2.3 Consensus size: 41
75105042 TCCCAAGCTG
*
75105052 GGTCTTACACGAATCGAATACGAA-GTCGATG-TCTCAGACAT
1 GGTCTTACACGAATCGAATAC-AATGTCAATGTTC-CAGACAT
*
75105093 GGTCTTACATGAATCGAATACAATGTCAATGTTCCAGACAT
1 GGTCTTACACGAATCGAATACAATGTCAATGTTCCAGACAT
75105134 GGTCTTACACG
1 GGTCTTACACG
75105145 TAACCACATA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
40 2 0.04
41 43 0.91
42 2 0.04
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (41 bp):
GGTCTTACACGAATCGAATACAATGTCAATGTTCCAGACAT
Found at i:75105198 original size:45 final size:45
Alignment explanation
Indices: 75105126--75105295 Score: 259
Period size: 45 Copynumber: 3.8 Consensus size: 45
75105116 TGTCAATGTT
* *
75105126 CCAGACATGGTCTTACACGTAACCACATATATCGATGCCAACGTC
1 CCAGACATGGTCTTACACGAAATCACATATATCGATGCCAACGTC
* *
75105171 CCAGACGTGGTCTTACACGAAATCACATATATCGATGCTAACGTC
1 CCAGACATGGTCTTACACGAAATCACATATATCGATGCCAACGTC
* * * *
75105216 CCAGACGTGGTCTTACACAAAATCACATATATAGATGCCAATGTC
1 CCAGACATGGTCTTACACGAAATCACATATATCGATGCCAACGTC
*
75105261 CCAGACATGGTCTTACATGAAATCACATATATCGA
1 CCAGACATGGTCTTACACGAAATCACATATATCGA
75105296 AATACTATGG
Statistics
Matches: 113, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 113 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (45 bp):
CCAGACATGGTCTTACACGAAATCACATATATCGATGCCAACGTC
Found at i:75105956 original size:24 final size:25
Alignment explanation
Indices: 75105898--75105956 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 25
75105888 AACTAACTTC
* *
75105898 ACAAAGATC-AAATATTCATCAATG
1 ACAAAAATCAAAATATTCATCAATA
* * *
75105922 GCATAACTCAAAATATTCATCAA-A
1 ACAAAAATCAAAATATTCATCAATA
75105946 ACAAAAATCAA
1 ACAAAAATCAA
75105957 GCATGGGCTT
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.54, C:0.19, G:0.05, T:0.22
Consensus pattern (25 bp):
ACAAAAATCAAAATATTCATCAATA
Found at i:75121939 original size:45 final size:45
Alignment explanation
Indices: 75121875--75121965 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
75121865 CCAAAACATG
* * *
75121875 TGCTACATACATCATGAACT-TAGACCATTACTCAATGAGTTCAGA
1 TGCTACATACATCATGAACTCAAG-CCATAACTCAATGAATTCAGA
*
75121920 TGCTACATATATCATGAACTCAAGCCATAACTCAATGAATTCAGA
1 TGCTACATACATCATGAACTCAAGCCATAACTCAATGAATTCAGA
75121965 T
1 T
75121966 CATATAGTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
45 39 0.95
46 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (45 bp):
TGCTACATACATCATGAACTCAAGCCATAACTCAATGAATTCAGA
Found at i:75124685 original size:104 final size:103
Alignment explanation
Indices: 75124505--75124727 Score: 358
Period size: 104 Copynumber: 2.2 Consensus size: 103
75124495 TGTATATAAA
** * *
75124505 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGAGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGAGTGATCCACCATATCTT
75124570 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
* * *
75124609 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGAG-TGATCCACCATATCT
75124673 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
75124712 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
75124728 GATATCCATT
Statistics
Matches: 111, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
103 21 0.19
104 89 0.80
105 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGAGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:75124779 original size:70 final size:71
Alignment explanation
Indices: 75124647--75124797 Score: 250
Period size: 70 Copynumber: 2.1 Consensus size: 71
75124637 TCATTGGTGG
* *
75124647 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
75124712 AGGGGT
66 AGGGGT
***
75124718 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCG
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
75124782 AGGGGT
66 AGGGGT
75124788 TGCTAAGTGC
1 TGCTAAGTGC
75124798 TGATTCCCCG
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
70 45 0.60
71 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (71 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
AGGGGT
Found at i:75124792 original size:26 final size:26
Alignment explanation
Indices: 75124757--75124808 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
75124747 AAATGAAAAG
*
75124757 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
75124783 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
75124809 TTCAGCGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:75132170 original size:26 final size:26
Alignment explanation
Indices: 75132135--75132185 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
75132125 AATGTGAAAG
*
75132135 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
75132161 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
75132186 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:75132197 original size:103 final size:103
Alignment explanation
Indices: 75132057--75132278 Score: 374
Period size: 103 Copynumber: 2.2 Consensus size: 103
75132047 TGTATATAAA
** * *
75132057 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
75132121 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
75132160 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
75132225 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
75132263 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
75132279 GATATCCATT
Statistics
Matches: 112, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 111 0.99
104 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:75132330 original size:70 final size:72
Alignment explanation
Indices: 75132198--75132349 Score: 245
Period size: 71 Copynumber: 2.1 Consensus size: 72
75132188 TCATTGGTGG
* *
75132198 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
75132262 GAGGGGT
66 GAGGGGT
***
75132269 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
75132333 GAGGGGT
66 GAGGGGT
75132340 TGCTAAGTGC
1 TGCTAAGTGC
75132350 TGATTCCCCG
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 24 0.32
71 51 0.68
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:75136831 original size:47 final size:47
Alignment explanation
Indices: 75136760--75137396 Score: 1076
Period size: 47 Copynumber: 13.5 Consensus size: 47
75136750 CCCTTCGGGA
* * * * * *
75136760 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
75136807 CCTATCACATATATACACTTTCACATTCATCACATTAGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75136854 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75136901 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75136948 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75136995 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75137042 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75137089 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75137136 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75137185 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75137232 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75137279 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
75137328 CTTATCACATATATACACTTTCACATTCATCACATTAGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75137375 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
75137397 CAATGAATAA
Statistics
Matches: 567, Mismatches: 19, Indels: 8
0.95 0.03 0.01
Matches are distributed among these distances:
47 476 0.84
49 91 0.16
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75136838 original size:25 final size:25
Alignment explanation
Indices: 75136810--75136888 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
75136800 ACTCGGCCCT
75136810 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
* * * *
75136835 ATCACAT-TA-GC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
75136857 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
75136882 ATCACAT
1 ATCACAT
75136889 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:75137197 original size:143 final size:141
Alignment explanation
Indices: 75136760--75137396 Score: 1076
Period size: 143 Copynumber: 4.5 Consensus size: 141
75136750 CCCTTCGGGA
* * * * * * *
75136760 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
** *
75136825 TTTCACATTCATCACATTAGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
75136890 GGCCATTAGGC
131 GGCCATTAGGC
75136901 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
75136966 TTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
75137031 GGCCATTAGGC
131 GGCCATTAGGC
*
75137042 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75137107 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
*
75137172 TTGGCCATTAGGC
129 TCGGCCATTAGGC
75137185 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75137250 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
* *
75137315 TTGGCCATTCGGC
129 TCGGCCATTAGGC
** *
75137328 CTTATCACATATATACACTTTCACATTCATCACATTAGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75137393 TTTC
66 TTTC
75137397 CAATGAATAA
Statistics
Matches: 475, Mismatches: 19, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
141 230 0.48
143 245 0.52
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:75137384 original size:22 final size:22
Alignment explanation
Indices: 75137309--75137384 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
75137299 TTTCACATTC
*
75137309 ATCACATTGGCCATTCGGCCTT
1 ATCACATTAGCCATTCGGCCTT
* * * *
75137331 ATCACATATATACACTTTC-ACATT
1 ATCACAT-TA-GC-CATTCGGCCTT
75137355 CATCACATTAGCCATTCGGCCTT
1 -ATCACATTAGCCATTCGGCCTT
75137378 ATCACAT
1 ATCACAT
75137385 ATATACACTT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 18 0.45
23 5 0.12
24 6 0.15
25 11 0.28
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (22 bp):
ATCACATTAGCCATTCGGCCTT
Found at i:75140988 original size:48 final size:48
Alignment explanation
Indices: 75140917--75141022 Score: 176
Period size: 48 Copynumber: 2.2 Consensus size: 48
75140907 CAAGATAAAT
* * *
75140917 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75140965 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75141013 ATGTGTATAT
1 ATATGTATAT
75141023 ATTGTGGCCG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.34, C:0.06, G:0.27, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:75142390 original size:37 final size:37
Alignment explanation
Indices: 75142290--75142392 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
75142280 CGAATAGTCC
* *
75142290 CCACACGTAGTTATCGGGTCTTACCCAGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
75142327 CCACACGTAGTCATTGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
75142364 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
75142393 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:75142591 original size:48 final size:48
Alignment explanation
Indices: 75142533--75142820 Score: 499
Period size: 48 Copynumber: 6.0 Consensus size: 48
75142523 ATATACACAC
*
75142533 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
75142581 ATCTCATACATATTTCACATTAGCCATT--GCTTTACCATATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
75142627 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
75142675 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
75142723 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
75142771 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
75142819 AT
1 AT
75142821 ATTTATCTTG
Statistics
Matches: 227, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
46 44 0.19
48 183 0.81
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:75153888 original size:47 final size:48
Alignment explanation
Indices: 75153834--75153943 Score: 127
Period size: 49 Copynumber: 2.3 Consensus size: 48
75153824 TCGTAAACAT
* * * * *
75153834 GGTCTTACACTGGC-TCTTACATCTAA-GTCGATGCCATGT-GTAAGATA
1 GGTCTTACACTGACTTCATACATC-AAGGCCGATGCCATGTCCT-AGACA
75153881 GGTCTTACACTGACTTTCATACATCAAGGCCGATGCCATGTCCTAGACA
1 GGTCTTACACTGAC-TTCATACATCAAGGCCGATGCCATGTCCTAGACA
75153930 GGTCTTACACTGAC
1 GGTCTTACACTGAC
75153944 ACACCTCAAG
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
47 13 0.24
48 2 0.04
49 38 0.70
50 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (48 bp):
GGTCTTACACTGACTTCATACATCAAGGCCGATGCCATGTCCTAGACA
Found at i:75165297 original size:46 final size:46
Alignment explanation
Indices: 75165244--75165419 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
75165234 TGGTTGAGCA
75165244 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75165290 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
75165335 CATCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75165383 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75165420 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75165400 original size:93 final size:93
Alignment explanation
Indices: 75165241--75165412 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
75165231 GGATGGTTGA
* * *
75165241 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75165306 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
75165334 GCATCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75165399 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75165413 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75166853 original size:31 final size:31
Alignment explanation
Indices: 75166807--75166883 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
75166797 TTTGGTGAGT
* * *
75166807 CACACGCCCGCGTGGGTAGGCTGTGTGGTCA
1 CACACACCCGTGTGGGTAGGCCGTGTGGTCA
75166838 CACACACCCGTGTGGGTAGGCCGTGTGGTCA
1 CACACACCCGTGTGGGTAGGCCGTGTGGTCA
*
75166869 CACAAACCCGTGTGG
1 CACACACCCGTGTGG
75166884 CTTGGGACAC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.17, C:0.30, G:0.35, T:0.18
Consensus pattern (31 bp):
CACACACCCGTGTGGGTAGGCCGTGTGGTCA
Found at i:75171199 original size:79 final size:81
Alignment explanation
Indices: 75171097--75171281 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
75171087 GCTGCTCGTT
* * *
75171097 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
75171160 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* ***
75171177 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
75171241 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
75171257 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75171282 CATCATTCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:75171281 original size:40 final size:40
Alignment explanation
Indices: 75171097--75171281 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
75171087 GCTGCTCGTT
* * *
75171097 CAAATGCCTTCGGGTCATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
75171137 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
75171177 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
75171216 CAAATGCCTTC-GGATCTTGGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
75171257 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75171282 CATCATTCGA
Statistics
Matches: 123, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.63
41 12 0.10
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:75172519 original size:56 final size:56
Alignment explanation
Indices: 75172459--75172578 Score: 240
Period size: 56 Copynumber: 2.1 Consensus size: 56
75172449 TATTAGTTTA
75172459 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
75172515 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
75172571 TTGCCCAT
1 TTGCCCAT
75172579 CATCCCTTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:75173209 original size:39 final size:39
Alignment explanation
Indices: 75173155--75173278 Score: 196
Period size: 39 Copynumber: 3.2 Consensus size: 39
75173145 GCTCTGATGA
* *
75173155 GCTTCAGTTAGCCTCCAGGCTTCTGTTTAGTACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGTACTTATGT
75173194 GCTTCAGTTAGCCTCCGGGCTTCCGTTTA-TCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGT-ACTTATGT
* *
75173233 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGTACTTATGT
75173272 GCTTCAG
1 GCTTCAG
75173279 CTAGATTTCG
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 78 0.99
ACGTcount: A:0.14, C:0.26, G:0.22, T:0.39
Consensus pattern (39 bp):
GCTTCAGTTAGCCTCCGGGCTTCCGTTTAGTACTTATGT
Found at i:75176448 original size:47 final size:47
Alignment explanation
Indices: 75176396--75176848 Score: 744
Period size: 47 Copynumber: 9.6 Consensus size: 47
75176386 GATAATTGTG
* *
75176396 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75176443 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75176490 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75176537 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75176586 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75176633 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75176680 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75176729 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * *
75176776 ATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75176823 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
75176849 TCTCGAAGGG
Statistics
Matches: 382, Mismatches: 20, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 291 0.76
49 91 0.24
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75176503 original size:96 final size:94
Alignment explanation
Indices: 75176396--75176848 Score: 744
Period size: 96 Copynumber: 4.8 Consensus size: 94
75176386 GATAATTGTG
* *
75176396 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
75176461 GTGATAAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
* *
75176490 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATAT
75176555 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75176586 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
*
75176651 GTGATGAGGCCTAATGGCCGATGTGATGA
66 GTGATAAGGCCTAATGGCCGATGTGATGA
75176680 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
75176745 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
75176776 ATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
75176841 GTGATAAG
66 GTGATAAG
75176849 TCTCGAAGGG
Statistics
Matches: 337, Mismatches: 18, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
94 155 0.46
96 182 0.54
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75176559 original size:143 final size:143
Alignment explanation
Indices: 75176396--75176848 Score: 806
Period size: 143 Copynumber: 3.2 Consensus size: 143
75176386 GATAATTGTG
75176396 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
75176459 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
75176524 GCCAATGTGATGA
131 GCCAATGTGATGA
75176537 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
75176602 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
*
75176667 GCCGATGTGATGA
131 GCCAATGTGATGA
75176680 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
75176745 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTG
66 ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
* *
75176810 GCCAACGTGATGG
131 GCCAATGTGATGA
75176823 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
75176849 TCTCGAAGGG
Statistics
Matches: 299, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 15 0.05
142 3 0.01
143 281 0.94
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (143 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATG
GCCAATGTGATGA
Found at i:75187026 original size:40 final size:40
Alignment explanation
Indices: 75186981--75187096 Score: 128
Period size: 40 Copynumber: 2.9 Consensus size: 40
75186971 ACCAACACAA
* * *
75186981 AGCCTACGGGTCTTTAAGCCCGGATATATTTCCAGCATAT
1 AGCCTACGGGTCTTTAAGCCCGAATACAATTCCAGCATAT
*
75187021 AGCCTACGGGTCTTTAAGCCCGAATACAATTCCAGCACGA-
1 AGCCTACGGGTCTTTAAGCCCGAATACAATTCCAGCA-TAT
* * * * *
75187061 AGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCA
1 AGCCTACGGGTCTTTAAGCCCGAATACAATTCCAGCA
75187097 CGAAGCCTGC
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
39 25 0.38
40 40 0.61
41 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
AGCCTACGGGTCTTTAAGCCCGAATACAATTCCAGCATAT
Found at i:75187083 original size:79 final size:78
Alignment explanation
Indices: 75186976--75187183 Score: 186
Period size: 78 Copynumber: 2.6 Consensus size: 78
75186966 CAATCACCAA
* * * * * * * *
75186976 CACAAAGCCTACGGGTCTTTAAGCCCGGATATATTTCCAGCA-TATAGCCTACGGGTCTTTAAGC
1 CACAAAGCCTGC-GGACCTTAAGCCCGGATACAATTCCAGCACGA-AGCCTAC-GGACCTTAAGC
75187040 CCGAATACAATTCCAG
63 CCGAATACAATTCCAG
* * * * *
75187056 CACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCTG
1 CACAAAGCCTGCGGACCTTAAGCCCGGATACAATTCCAGCACGAAGCCTACGGACCTTAAGCCCG
*
75187121 GATACAATTCCAG
66 AATACAATTCCAG
* * * **
75187134 CACAAAGCCTGCGGGA-CTTTAGCCCAGATATAACGCCAGCACGAATGCCT
1 CACAAAGCCTGC-GGACCTTAAGCCCGGATACAATTCCAGCACGAA-GCCT
75187184 TCAGGGCTTT
Statistics
Matches: 104, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
78 56 0.54
79 37 0.36
80 11 0.11
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (78 bp):
CACAAAGCCTGCGGACCTTAAGCCCGGATACAATTCCAGCACGAAGCCTACGGACCTTAAGCCCG
AATACAATTCCAG
Found at i:75187088 original size:39 final size:39
Alignment explanation
Indices: 75187034--75187147 Score: 192
Period size: 39 Copynumber: 2.9 Consensus size: 39
75187024 CTACGGGTCT
* *
75187034 TTAAGCCCGAATACAATTCCAGCACGAAGCCTGCGGACC
1 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACC
75187073 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACC
1 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACC
* *
75187112 TTAAGTCTGGATACAATTCCAGCACAAAGCCTGCGG
1 TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGG
75187148 GACTTTAGCC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (39 bp):
TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACC
Found at i:75187173 original size:39 final size:39
Alignment explanation
Indices: 75187130--75187327 Score: 292
Period size: 39 Copynumber: 5.1 Consensus size: 39
75187120 GGATACAATT
* * * *
75187130 CCAGCAC-AAAGCCTGCGGGACTTTAGCCCAGATATAACG
1 CCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACA
*
75187169 CCAGCACGAATGCCTTCAGGG-CTTTGCCCGGATATAACA
1 CCAGCACGAATGCCTTC-GGGACTTAGCCCGGATATAACA
*
75187208 CAAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
*
75187247 CTAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
*
75187286 CTAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
75187325 CCA
1 CCA
75187328 TTATAAAGTC
Statistics
Matches: 147, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
38 3 0.02
39 133 0.90
40 8 0.05
41 3 0.02
ACGTcount: A:0.29, C:0.30, G:0.23, T:0.19
Consensus pattern (39 bp):
CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACA
Found at i:75187215 original size:117 final size:117
Alignment explanation
Indices: 75187093--75187325 Score: 285
Period size: 117 Copynumber: 2.0 Consensus size: 117
75187083 ATACAATTCC
* * **
75187093 AGCACGAA-GCCTGC-GGACCTTAAGTCTGGATACAATTCCAGCAC-AAAGCCTGCGGGACTTTA
1 AGCACGAATGCCTGCGGGA-CTT-AGCCCGGATACAACACCAGCACGAAAGCCTGCGGGAC-TTA
* *
75187155 GCCCAGATATAACGCCAGCACGAATGCCTTCAGGG-CTTTGCCCGGATATAACACA
63 GCCCAGATATAACACCAGCACGAATGCCTTC-GGGACTTAGCCCGGATATAACACA
* * * * *
75187210 AGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACTAGCACGAATGCCTTCGGGACTTAGCC
1 AGCACGAATGCCTGCGGGACTTAGCCCGGATACAACACCAGCACGAAAGCCTGCGGGACTTAGCC
* *
75187275 CGGATATAACACTAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACAC
66 CAGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACAC
75187326 CATTATAAAG
Statistics
Matches: 99, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
116 3 0.03
117 73 0.74
118 20 0.20
119 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (117 bp):
AGCACGAATGCCTGCGGGACTTAGCCCGGATACAACACCAGCACGAAAGCCTGCGGGACTTAGCC
CAGATATAACACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACA
Found at i:75187433 original size:28 final size:28
Alignment explanation
Indices: 75187400--75187481 Score: 92
Period size: 28 Copynumber: 2.9 Consensus size: 28
75187390 ATTTAATCAT
* *
75187400 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
75187428 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* * * *
75187456 TCAAAATTTCGTACACTGAGTACCAT
1 TCAATATTTCGCACACTAAGTGCCAT
75187482 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.30, C:0.24, G:0.11, T:0.34
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:75198255 original size:20 final size:20
Alignment explanation
Indices: 75198230--75198304 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
75198220 TTATAAATAC
*
75198230 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
75198250 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75198270 GTCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
75198290 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
75198305 TCCCACGTAT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.16
20 41 0.80
21 2 0.04
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75198378 original size:25 final size:25
Alignment explanation
Indices: 75198332--75198379 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
75198322 ATAAGTAAAC
* * *
75198332 CCTAGGGGTATAATAGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
*
75198357 CCTAGGGGCAAAACAGTTATTTT
1 CCTAGGGGCAAAACAGTCATTTT
75198380 CATATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:75205884 original size:26 final size:25
Alignment explanation
Indices: 75205812--75205921 Score: 125
Period size: 26 Copynumber: 4.4 Consensus size: 25
75205802 CTGGAGGCCT
*
75205812 AGCCTCTTTTAAT-AACTGGTGCA-A
1 AGCC-CTTTTAATAAACTGGGGCATA
* *
75205836 AGCCCTTTTGATAAACTAGGGCATA
1 AGCCCTTTTAATAAACTGGGGCATA
* *
75205861 AGCCTTTTTCAATGAACTGGGGCATA
1 AGCCCTTTT-AATAAACTGGGGCATA
*
75205887 AGCCCTTTTCAATAAACTGAGGCATA
1 AGCCCTTTT-AATAAACTGGGGCATA
75205913 AGCCCTTTT
1 AGCCCTTTT
75205922 GCACTTCCTC
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
23 7 0.10
24 12 0.16
25 9 0.12
26 45 0.62
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCATA
Found at i:75205996 original size:20 final size:20
Alignment explanation
Indices: 75205971--75206045 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
75205961 TTATGAATAC
*
75205971 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
75205991 ATCATGTGCATATCATACCT
1 ATCATGTGCATATCATACAT
*
75206011 TTCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
75206031 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
75206046 TCCCACGTAT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
18 8 0.16
20 40 0.82
21 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75206101 original size:25 final size:25
Alignment explanation
Indices: 75206073--75206120 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75206063 ATAAGTAAAC
* * *
75206073 CCTAGGGGTATAATAGTCATTTTTA
1 CCTAGGGGCAAAACAGTCATTTTTA
75206098 CCTAGGGGCAAAACAGTCATTTT
1 CCTAGGGGCAAAACAGTCATTTT
75206121 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACAGTCATTTTTA
Found at i:75207267 original size:22 final size:22
Alignment explanation
Indices: 75207234--75207277 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
75207224 GCTGGAAAAG
75207234 AAAAGAGAGAAAAAGACTACACC
1 AAAAGAGAGAAAAAGAC-ACACC
*
75207257 AAAA-AGAGAAAACGACACACC
1 AAAAGAGAGAAAAAGACACACC
75207278 CTAATTCCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.61, C:0.20, G:0.16, T:0.02
Consensus pattern (22 bp):
AAAAGAGAGAAAAAGACACACC
Found at i:75212542 original size:37 final size:37
Alignment explanation
Indices: 75212488--75212662 Score: 296
Period size: 37 Copynumber: 4.7 Consensus size: 37
75212478 GCTCAGACGA
* * *
75212488 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
75212525 AATCTCCACACGTAGTTATCGAGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
75212562 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
75212599 AATCTCCACACGTAGTCATCGGGTCTTACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
75212636 AATCTCCACACGTAGTCATCGGGTCTT
1 AATCTCCACACGTAGTCATCGGGTCTT
75212663 TAGAGCTCGG
Statistics
Matches: 132, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 132 1.00
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:75212852 original size:47 final size:47
Alignment explanation
Indices: 75212781--75213136 Score: 581
Period size: 47 Copynumber: 7.6 Consensus size: 47
75212771 CCCTTCGGGA
* * * * * *
75212781 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75212828 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75212875 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75212920 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75212967 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75213014 CTTACCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75213063 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75213110 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
75213137 TATTCAAATA
Statistics
Matches: 289, Mismatches: 16, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
45 45 0.16
47 200 0.69
49 44 0.15
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75212884 original size:22 final size:22
Alignment explanation
Indices: 75212856--75212929 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
75212846 TTTCACATTC
75212856 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** * *
75212878 ATCACATATACACTTTCA--CATT
1 ATCACATCGGC-CATT-AGGCCTT
75212900 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
75212923 ATCACAT
1 ATCACAT
75212930 ATATACACTT
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 21 0.57
23 14 0.38
24 1 0.03
ACGTcount: A:0.28, C:0.31, G:0.11, T:0.30
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:75213083 original size:96 final size:94
Alignment explanation
Indices: 75212781--75213136 Score: 581
Period size: 96 Copynumber: 3.8 Consensus size: 94
75212771 CCCTTCGGGA
* * * * * * *
75212781 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75212846 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
75212875 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
75212938 TTTCACATTCATCACATCGACCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
75212967 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
75213032 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
75213063 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75213128 TTTCACATT
66 TTTCACATT
75213137 TATTCAAATA
Statistics
Matches: 245, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
92 84 0.34
94 71 0.29
96 90 0.37
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:75213090 original size:143 final size:139
Alignment explanation
Indices: 75212781--75213136 Score: 577
Period size: 143 Copynumber: 2.5 Consensus size: 139
75212771 CCCTTCGGGA
* * * * * * *
75212781 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
75212846 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATACACTTTCACATTCATCACATCGG
66 TTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATACACTTTCACATTCATCACATCGG
75212911 CCATTAGGC
131 CCATTAGGC
*
75212920 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75212985 TTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTACCAC----ATATACACTTTCACATTCATCACA
* *
75213050 TTGGCCATTCGGC
127 TCGGCCATTAGGC
75213063 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
75213128 TTTCACATT
66 TTTCACATT
75213137 TATTCAAATA
Statistics
Matches: 201, Mismatches: 12, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
139 93 0.46
143 108 0.54
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (139 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATACACTTTCACATTCATCACATCGG
CCATTAGGC
Found at i:75226403 original size:20 final size:20
Alignment explanation
Indices: 75226374--75226411 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
75226364 GTCACATATA
75226374 TCATGAGCTCAGATCACAAC
1 TCATGAGCTCAGATCACAAC
*
75226394 TCATGGGCTCAGATCACA
1 TCATGAGCTCAGATCACA
75226412 TAGTTCCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (20 bp):
TCATGAGCTCAGATCACAAC
Found at i:75229729 original size:27 final size:27
Alignment explanation
Indices: 75229686--75229800 Score: 146
Period size: 27 Copynumber: 4.3 Consensus size: 27
75229676 TGGAGGAAGC
*
75229686 ATTCTGGTGGCTTTGCCACAAATATCT
1 ATTCTGGTGGCTCTGCCACAAATATCT
75229713 GA-TCTGGTGGCTCTGCCACAAATATCT
1 -ATTCTGGTGGCTCTGCCACAAATATCT
* *
75229740 ATTTCTAGTGGCTCTGCCGC-AATATCT
1 A-TTCTGGTGGCTCTGCCACAAATATCT
*
75229767 ATTTCTGGTGGCTCTGCCAC-ATTATCT
1 A-TTCTGGTGGCTCTGCCACAAATATCT
75229794 ATTCTGG
1 ATTCTGG
75229801 CAACCATGCT
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
26 7 0.09
27 56 0.71
28 16 0.20
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (27 bp):
ATTCTGGTGGCTCTGCCACAAATATCT
Found at i:75237416 original size:26 final size:25
Alignment explanation
Indices: 75237386--75237443 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 25
75237376 ATTTACTAAA
75237386 ATACCCTAAGTATG-AAAATTAACATT
1 ATACCCTAA--ATGTAAAATTAACATT
* *
75237412 ATACCCCTCAATGTAAAATTACCATT
1 ATA-CCCTAAATGTAAAATTAACATT
75237438 ATACCC
1 ATACCC
75237444 CTAGGGTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 6 0.21
26 17 0.61
27 5 0.18
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.29
Consensus pattern (25 bp):
ATACCCTAAATGTAAAATTAACATT
Found at i:75237595 original size:27 final size:28
Alignment explanation
Indices: 75237552--75237665 Score: 119
Period size: 27 Copynumber: 4.2 Consensus size: 28
75237542 GAGGAAGCAT
* *
75237552 TCTGGTGGCTCTACCACAAATATTTG-A
1 TCTGGTGGCTCTGCCACAAATATCTGTA
* *
75237579 TCTGGTGGCTTTGCCACAAATATCTGTT
1 TCTGGTGGCTCTGCCACAAATATCTGTA
*
75237607 TCTAGTGGCTCTGCCAC-AATATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTGTA
** **
75237634 TCTGGTGATTCTATCAC-AATATCTGT-
1 TCTGGTGGCTCTGCCACAAATATCTGTA
75237660 TCTGGT
1 TCTGGT
75237666 AGCCATGCTG
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
26 6 0.08
27 53 0.72
28 15 0.20
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (28 bp):
TCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:75247366 original size:25 final size:25
Alignment explanation
Indices: 75247338--75247385 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75247328 TTATAATATG
* * *
75247338 AAAATGACTATTTTCCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
75247363 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
75247386 ATTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.25, G:0.12, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:75247428 original size:20 final size:19
Alignment explanation
Indices: 75247405--75247471 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 19
75247395 TATATTTGAT
75247405 ACATGATTGATATGATATGC
1 ACATGATTG-TATGATATGC
*
75247425 ACATGATAGGTATGATATGC
1 ACATGAT-TGTATGATATGC
* *
75247445 ACATGATATGTCTGAAATGC
1 ACATGAT-TGTATGATATGC
75247465 ACATGAT
1 ACATGAT
75247472 GAATTCATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 41 0.98
21 1 0.02
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (19 bp):
ACATGATTGTATGATATGC
Found at i:75247599 original size:52 final size:51
Alignment explanation
Indices: 75247521--75247618 Score: 169
Period size: 52 Copynumber: 1.9 Consensus size: 51
75247511 GAGGAAGTGC
*
75247521 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
*
75247573 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCTCAGTT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTT
75247619 ATTAAAGAGC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 9 0.20
52 35 0.80
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:75247618 original size:25 final size:26
Alignment explanation
Indices: 75247521--75247618 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
75247511 GAGGAAGTGC
*
75247521 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
75247547 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
75247573 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
75247599 AAAAGGGCTT-TGCCTCAGTT
1 AAAAGGGCTTATGCCCCAGTT
75247619 ATTAAAGAGC
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
25 9 0.14
26 57 0.86
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:75249723 original size:44 final size:44
Alignment explanation
Indices: 75249669--75249753 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
75249659 TATGTGTGAG
* * *
75249669 GCATCTGAGCTCATTGAGTTCGTCTGAGTTCATTATGGATGCGA
1 GCATCCGAGCTCATTGAGTTCGTCCGAGATCATTATGGATGCGA
* *
75249713 GCATCCGAGCTCGTTGAGTTGGTCCGAGATCATTATGGATG
1 GCATCCGAGCTCATTGAGTTCGTCCGAGATCATTATGGATG
75249754 TGATACATGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32
Consensus pattern (44 bp):
GCATCCGAGCTCATTGAGTTCGTCCGAGATCATTATGGATGCGA
Found at i:75254084 original size:46 final size:46
Alignment explanation
Indices: 75253922--75254088 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 46
75253912 TTTGTGTGCT
* *
75253922 AGTGTAAGAGATGTTTGGGACATGCATCGG-CTAC-ATTATGAGAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGA-GATGAGAGCC
* * * * * *
75253968 AGTGTAAGACCATGTTTAGGACATGACATTGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTTTGGGACATG-CATCGGCCTCGAGATGAGAGCC
** *
75254016 AGTGTAAGACATGTCCGAGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATG-AGAGCC
75254062 AGTGTAAGACATGTTTGGGACATGCAT
1 AGTGTAAGACATGTTTGGGACATGCAT
75254089 TAGCTACATA
Statistics
Matches: 96, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
46 48 0.50
47 25 0.26
48 21 0.22
49 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGAGAGCC
Found at i:75255418 original size:20 final size:21
Alignment explanation
Indices: 75255380--75255418 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
75255370 TTATAATGAA
*
75255380 CACACTGGCGTGATGCCCTCT
1 CACACGGGCGTGATGCCCTCT
75255401 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGATGCCCT
75255419 GTTTCAAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.38, G:0.28, T:0.21
Consensus pattern (21 bp):
CACACGGGCGTGATGCCCTCT
Found at i:75259383 original size:15 final size:15
Alignment explanation
Indices: 75259363--75259393 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
75259353 TAGGCTTGGA
75259363 AACTAGGGCCAGTAT
1 AACTAGGGCCAGTAT
75259378 AACTAGGGCCAGTAT
1 AACTAGGGCCAGTAT
75259393 A
1 A
75259394 GGGTGTTACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (15 bp):
AACTAGGGCCAGTAT
Found at i:75261841 original size:51 final size:51
Alignment explanation
Indices: 75261786--75261952 Score: 135
Period size: 51 Copynumber: 3.3 Consensus size: 51
75261776 CTTCACATAG
* ** * *
75261786 TACCACACTTGTGACCAAAGCTATCTTTG-ACACATAGTGGTCTGCACTTAA
1 TACCACACATGTGACCAAAGCTAT-TAGGTACACATAGTAGCCTGCACTTAA
* * *
75261837 TACCACACATGTGATCGAAGCTATTAGGTACACATAGTAGCCTGCACTTAG
1 TACCACACATGTGACCAAAGCTATTAGGTACACATAGTAGCCTGCACTTAA
* * * * * *
75261888 TACTACACATGCGA-CATAA-CCATCT-GGTACACGTAGTAGCCTGCGCTTAG
1 TACCACACATGTGACCA-AAGCTAT-TAGGTACACATAGTAGCCTGCACTTAA
* *
75261938 TACTACACACGTGAC
1 TACCACACATGTGAC
75261953 TTAAAACCAT
Statistics
Matches: 96, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
50 41 0.43
51 55 0.57
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (51 bp):
TACCACACATGTGACCAAAGCTATTAGGTACACATAGTAGCCTGCACTTAA
Found at i:75261929 original size:50 final size:51
Alignment explanation
Indices: 75261863--75262000 Score: 170
Period size: 52 Copynumber: 2.7 Consensus size: 51
75261853 GAAGCTATTA
*
75261863 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGAC-ATAACCATCT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACTAAAACCATCT
* * * * *
75261913 GGTACACGTAGTAGCCTGCGCTTAGTACTACACACGTGACTTAAAACCATTT
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGAC-TAAAACCATCT
*** *
75261965 TAAACACATAGTAGCCTGCACATAGTACTACACATG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACATG
75262001 TTTTCTCACA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
50 36 0.49
52 37 0.51
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (51 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACTAAAACCATCT
Found at i:75264742 original size:15 final size:14
Alignment explanation
Indices: 75264690--75264749 Score: 57
Period size: 15 Copynumber: 4.1 Consensus size: 14
75264680 AGAATTCAAG
*
75264690 ATAAGGAAATCCATA
1 ATAAAGAAATCCA-A
* *
75264705 ACAGAGAAATCCAGA
1 ATAAAGAAATCCA-A
*
75264720 ATATAGAAATCCAA
1 ATAAAGAAATCCAA
75264734 CATAAAGAAATCCAA
1 -ATAAAGAAATCCAA
75264749 A
1 A
75264750 ACAAGAAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
14 2 0.05
15 35 0.95
ACGTcount: A:0.57, C:0.17, G:0.12, T:0.15
Consensus pattern (14 bp):
ATAAAGAAATCCAA
Found at i:75280787 original size:43 final size:43
Alignment explanation
Indices: 75280711--75281058 Score: 270
Period size: 43 Copynumber: 8.2 Consensus size: 43
75280701 TCCTAGATAG
* *
75280711 GGTCTTACACG-AAA--TCAGATACGATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAAATCTCA-AT-CGAGGCCTATGTCCCAGACAT
* * * * *
75280753 GGTCTTAAATGTAAATCTCTATCAAGGCCTATGTCCCAGATAT
1 GGTCTTACACGTAAATCTCAATCGAGGCCTATGTCCCAGACAT
* * * * *
75280796 GGTCTTACATG-AAA--TCAGATACGATGTC-GTGTCCTAGACAT
1 GGTCTTACACGTAAATCTCA-AT-CGAGGCCTATGTCCCAGACAT
* * * *
75280837 GGTCTTATACGTAAATTTCAATCGAGGCTTGTGTCCCAGACAT
1 GGTCTTACACGTAAATCTCAATCGAGGCCTATGTCCCAGACAT
* * * *
75280880 GGTCTTACATG-AAA--TCAGATACGATGCCGATGTCCCAGATAT
1 GGTCTTACACGTAAATCTCA-AT-CGAGGCCTATGTCCCAGACAT
* * * *
75280922 AGTCATATACGTAAATTTCAATCGAGGCCTATGTCCCAGACAT
1 GGTCTTACACGTAAATCTCAATCGAGGCCTATGTCCCAGACAT
** * *
75280965 GGTCTTACACG-AAATCAGATAT-GATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAAATCTCA-ATCGAGGCCTATGTCCCAGACAT
* * *
75281007 GGTCTTATACGTAAATTTCAATCGAGGACTATGTCCCAGACAT
1 GGTCTTACACGTAAATCTCAATCGAGGCCTATGTCCCAGACAT
75281050 GGTCTTACA
1 GGTCTTACA
75281059 TGATGTCTCA
Statistics
Matches: 238, Mismatches: 51, Indels: 33
0.74 0.16 0.10
Matches are distributed among these distances:
40 5 0.02
41 23 0.10
42 84 0.35
43 114 0.48
44 7 0.03
45 5 0.02
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAAATCTCAATCGAGGCCTATGTCCCAGACAT
Found at i:75280794 original size:85 final size:85
Alignment explanation
Indices: 75280711--75281058 Score: 536
Period size: 85 Copynumber: 4.1 Consensus size: 85
75280701 TCCTAGATAG
* * * *
75280711 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTAAATGTAAATCTCTATC
1 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAATTTCAATC
* *
75280776 AAGGCCTATGTCCCAGATAT
66 GAGGCCTATGTCCCAGACAT
* * *
75280796 GGTCTTACATGAAATCAGATACGATGTCG-TGTCCTAGACATGGTCTTATACGTAAATTTCAATC
1 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAATTTCAATC
* *
75280860 GAGGCTTGTGTCCCAGACAT
66 GAGGCCTATGTCCCAGACAT
* * * *
75280880 GGTCTTACATGAAATCAGATACGATGCCGATGTCCCAGATATAGTCATATACGTAAATTTCAATC
1 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAATTTCAATC
75280945 GAGGCCTATGTCCCAGACAT
66 GAGGCCTATGTCCCAGACAT
*
75280965 GGTCTTACACGAAATCAGATATGATGCCGATGTCCCAGACATGGTCTTATACGTAAATTTCAATC
1 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAATTTCAATC
*
75281030 GAGGACTATGTCCCAGACAT
66 GAGGCCTATGTCCCAGACAT
75281050 GGTCTTACA
1 GGTCTTACA
75281059 TGATGTCTCA
Statistics
Matches: 238, Mismatches: 24, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
84 74 0.31
85 164 0.69
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (85 bp):
GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTAAATTTCAATC
GAGGCCTATGTCCCAGACAT
Found at i:75280952 original size:169 final size:170
Alignment explanation
Indices: 75280711--75281061 Score: 544
Period size: 169 Copynumber: 2.1 Consensus size: 170
75280701 TCCTAGATAG
* * * * *
75280711 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTAAATGTAAATCTCTATC
1 GGTCTTACATGAAATCAGATACGATGCCGATGTCCCAGACATAGTCATAAACGTAAATCTCAATC
* * * *
75280776 AAGGCCTATGTCCCAGATATGGTCTTACATGAAATCAGATACGATGTCG-TGTCCTAGACATGGT
66 AAGGCCTATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGT
*
75280840 CTTATACGTAAATTTCAATCGAGG-CTTGTGTCCCAGACAT
131 CTTATACGTAAATTTCAATCGAGGAC-TATGTCCCAGACAT
* * *
75280880 GGTCTTACATGAAATCAGATACGATGCCGATGTCCCAGATATAGTCATATACGTAAATTTCAATC
1 GGTCTTACATGAAATCAGATACGATGCCGATGTCCCAGACATAGTCATAAACGTAAATCTCAATC
* *
75280945 GAGGCCTATGTCCCAGACATGGTCTTACACGAAATCAGATATGATGCCGATGTCCCAGACATGGT
66 AAGGCCTATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGT
75281010 CTTATACGTAAATTTCAATCGAGGACTATGTCCCAGACAT
131 CTTATACGTAAATTTCAATCGAGGACTATGTCCCAGACAT
75281050 GGTCTTACATGA
1 GGTCTTACATGA
75281062 TGTCTCAAAC
Statistics
Matches: 165, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
169 101 0.61
170 63 0.38
171 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (170 bp):
GGTCTTACATGAAATCAGATACGATGCCGATGTCCCAGACATAGTCATAAACGTAAATCTCAATC
AAGGCCTATGTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGT
CTTATACGTAAATTTCAATCGAGGACTATGTCCCAGACAT
Found at i:75289476 original size:49 final size:49
Alignment explanation
Indices: 75289415--75289610 Score: 212
Period size: 50 Copynumber: 3.9 Consensus size: 49
75289405 TAGCCAAAGC
* *
75289415 TATCTGGTACACATAGTAGCCTGCACTTAGTACTATACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
* * * *
75289464 TATCCGGTACACATAGTAGCCTACACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * * *
75289514 CATCTGATACACGTAGTAGCCTGCACTTAGTGCTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * * * *
75289565 TATCGGGTACGCATAATAGCTTGCACTTAGTACTACACATGCGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
75289611 TCACAATAGA
Statistics
Matches: 119, Mismatches: 25, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
49 41 0.34
50 43 0.36
51 35 0.29
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:75289611 original size:101 final size:99
Alignment explanation
Indices: 75289416--75289611 Score: 248
Period size: 101 Copynumber: 2.0 Consensus size: 99
75289406 AGCCAAAGCT
* * * *
75289416 ATCTGGTACACATAGTAGCCTGCACTTAGTACTATACATGCGACCAATTATCCGGTACACATAGT
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAAT
*
75289481 AGCCTACACTTAGTACTACACACGTGACCTAACC
66 AGCCTACACTTAGTACTACACACGCGACCTAACC
* * * * * *
75289515 ATCTGATACACGTAGTAGCCTGCACTTAGTGCTACACACGTGATCGAAGTTATCGGGTACGCATA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACATA
* * *
75289580 ATAGCTTGCACTTAGTACTACACATGCGACCT
64 ATAGCCTACACTTAGTACTACACACGCGACCT
75289612 CACAATAGAT
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 37 0.46
100 3 0.04
101 41 0.51
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACATAAT
AGCCTACACTTAGTACTACACACGCGACCTAACC
Found at i:75292236 original size:2 final size:2
Alignment explanation
Indices: 75292231--75292255 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
75292221 CATATATATA
75292231 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
75292256 ATAATCAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:75294839 original size:51 final size:49
Alignment explanation
Indices: 75294784--75294934 Score: 187
Period size: 51 Copynumber: 3.0 Consensus size: 49
75294774 CACTTGTAGC
*
75294784 CAAAGCTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
1 CAAAG-TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
* * * * *
75294834 TCAAAGTTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGA
1 -CAAAG-TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
* *
75294885 CCAA-TAATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
1 CAAAGT-ATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
75294934 C
1 C
75294935 CTCACAATAG
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
48 1 0.01
49 38 0.44
50 3 0.03
51 44 0.51
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (49 bp):
CAAAGTATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA
Found at i:75294917 original size:49 final size:51
Alignment explanation
Indices: 75294795--75294930 Score: 186
Period size: 49 Copynumber: 2.7 Consensus size: 51
75294785 AAAGCTATCT
* * *
75294795 GGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTAATCC
* * * *
75294846 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCGA-CCAA-TAATCC
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTAATCC
*
75294895 GGTACACGTAGTAGCCTGCACTTAGTACTACACACG
1 GGTACACATAGTAGCCTGCACTTAGTACTACACACG
75294931 TGACCTCACA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 36 0.49
50 3 0.04
51 35 0.47
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (51 bp):
GGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTAATCC
Found at i:75297641 original size:39 final size:39
Alignment explanation
Indices: 75297598--75297723 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 39
75297588 GGACTTTAGC
* * ** * *
75297598 CCGGACATATTTCCAGCATGTAGCCTACAGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGT
*
75297637 CCGGATATAATTCCAGTACATAGCCTGCAGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGT
*
75297676 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGT
75297715 CCGGATATA
1 CCGGATATA
75297724 CATCGCTGAA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCAGACCCTAAGT
Found at i:75301951 original size:49 final size:49
Alignment explanation
Indices: 75301891--75302684 Score: 1255
Period size: 49 Copynumber: 16.6 Consensus size: 49
75301881 GATAATTGTG
* *
75301891 ATGTG-AA-TGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75301938 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75301987 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75302034 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75302081 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75302130 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75302179 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75302226 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75302275 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75302324 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75302371 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75302420 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75302469 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75302518 ATGTGAAAGTGTATATAT-GGT-ATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75302565 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
75302612 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75302659 ATGTGATAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
75302685 TCCCGAAGGG
Statistics
Matches: 697, Mismatches: 38, Indels: 24
0.92 0.05 0.03
Matches are distributed among these distances:
45 5 0.01
46 2 0.00
47 300 0.43
48 5 0.01
49 385 0.55
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75301991 original size:96 final size:97
Alignment explanation
Indices: 75301891--75302684 Score: 1199
Period size: 96 Copynumber: 8.3 Consensus size: 97
75301881 GATAATTGTG
* *
75301891 ATGTGAA-TGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 ATGTGAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
75301955 TATGTGATAAGGCCTAATGGCCGATGTGATGA
66 TATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75301987 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
75302048 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75302081 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
75302146 ATATGTGATAAGGCCTAATAGCCGATGTGATGA
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75302179 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
75302242 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75302275 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
75302338 ATATGTGATAAGGCCGAATGGCCAATGTGATGA
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
75302371 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
75302436 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
75302469 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
75302534 AT-GGT-ATAAGGCCTAATAGCCGATGTGATGA
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75302565 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATGTG-AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * *
75302626 ATATGTGACAGGGCCGAGTGGCCAACGTGATGG
65 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
75302659 ATGTGATAGTGTATA-A-ATGTGATAAG
1 ATGTGA-AGTGTATATATATGTGATAAG
75302685 TCCCGAAGGG
Statistics
Matches: 648, Mismatches: 35, Indels: 32
0.91 0.05 0.04
Matches are distributed among these distances:
92 5 0.01
93 3 0.00
94 127 0.20
95 1 0.00
96 317 0.49
97 4 0.01
98 191 0.29
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (97 bp):
ATGTGAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75302047 original size:145 final size:144
Alignment explanation
Indices: 75301891--75302684 Score: 1357
Period size: 145 Copynumber: 5.5 Consensus size: 144
75301881 GATAATTGTG
* *
75301891 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
75301956 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAAT
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAAT
75302020 AGCCGATGTGATGA
131 AGCCGATGTGATGA
75302034 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
*
75302099 ATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAA
75302164 TAGCCGATGTGATGA
130 TAGCCGATGTGATGA
75302179 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
75302244 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAA
75302309 TAGCCGATGTGATGA
130 TAGCCGATGTGATGA
75302324 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
75302389 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAA
*
75302454 TGGCCGATGTGATGA
130 TAGCCGATGTGATGA
* *
75302469 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
75302534 AT-GGT-ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATGAGGCCTA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTA
*
75302596 ATGGCCGATGTGATGA
129 ATAGCCGATGTGATGA
* * * * * *
75302612 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGATAGTGTATA-A-
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
75302675 ATGTGATAAG
66 ATGTGATAAG
75302685 TCCCGAAGGG
Statistics
Matches: 626, Mismatches: 19, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
140 3 0.00
141 48 0.08
143 150 0.24
145 371 0.59
146 2 0.00
147 52 0.08
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (144 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAAT
AGCCGATGTGATGA
Found at i:75302579 original size:38 final size:39
Alignment explanation
Indices: 75302537--75302626 Score: 92
Period size: 47 Copynumber: 2.1 Consensus size: 39
75302527 TGTATATATG
75302537 GTATA-AGGCCTAATAGCCGATGTGATGAATGTGAAAGT
1 GTATAGAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
*
75302575 GTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 G----TA--T-A-GAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
75302622 GTATA
1 GTATA
75302627 TATGTGACAG
Statistics
Matches: 42, Mismatches: 1, Indels: 16
0.71 0.02 0.27
Matches are distributed among these distances:
38 1 0.02
40 1 0.02
41 1 0.02
42 2 0.05
43 2 0.05
44 1 0.02
45 1 0.02
47 33 0.79
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (39 bp):
GTATAGAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
Found at i:75304955 original size:39 final size:40
Alignment explanation
Indices: 75304902--75305256 Score: 520
Period size: 39 Copynumber: 9.2 Consensus size: 40
75304892 TCCGGCTAAT
75304902 AAGAGC-TTC-TGCTAGTGATGTA-CCGGGCTAAGTCCCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
*
75304939 AAGAGCATTCATGCTAGTGATGTA-CCGGGCTAAGTCCCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
75304978 -AGAGCATTCGTGCTAGTGATGTA-CCGGGCTAAGTCCCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
75305016 AAGAGCATTCGTGCTAGTGATGTATCC-GGCTAAGTCCCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
75305055 AAGAGCATTCGTGCTAGTGATGTATCC-GGCTAAGTCCCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
75305094 AAGAGCATTCGTGCTAGTGATGTATCC-GGCTAAGTCCCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
* *
75305133 AAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGT-TCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
* * *
75305172 AAGAGCATTCGTGCTA--GATATATCCGTGCTAA-ACCTCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCC-CG
* * * *
75305210 AAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCG
1 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
75305250 AAGAGCA
1 AAGAGCA
75305257 ATCATGCTGG
Statistics
Matches: 295, Mismatches: 13, Indels: 17
0.91 0.04 0.05
Matches are distributed among these distances:
37 20 0.07
38 57 0.19
39 184 0.62
40 32 0.11
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
Found at i:75308727 original size:49 final size:49
Alignment explanation
Indices: 75308667--75309170 Score: 838
Period size: 47 Copynumber: 10.6 Consensus size: 49
75308657 GATAATTGTG
75308667 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75308714 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75308763 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75308810 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75308857 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75308906 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75308955 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75309004 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75309051 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
75309098 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75309145 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
75309171 TCCCGAAGGG
Statistics
Matches: 440, Mismatches: 11, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
47 239 0.54
48 3 0.01
49 198 0.45
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75309054 original size:241 final size:239
Alignment explanation
Indices: 75308667--75309170 Score: 890
Period size: 241 Copynumber: 2.1 Consensus size: 239
75308657 GATAATTGTG
75308667 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
75308730 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
75308795 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
131 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * * *
75308860 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
196 TGAAAGTG--TATATATGTGACAAGGCCGAATGGCCAACGTGATGA
75308906 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
75308971 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
75309036 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
131 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
* * *
75309101 TGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
196 TGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
75309145 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
75309171 TCCCGAAGGG
Statistics
Matches: 255, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
237 10 0.04
238 1 0.00
239 49 0.19
240 2 0.01
241 193 0.76
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (239 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
TGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGTGATGA
Found at i:75314328 original size:75 final size:75
Alignment explanation
Indices: 75314204--75314353 Score: 264
Period size: 75 Copynumber: 2.0 Consensus size: 75
75314194 TTTCATAGAA
* *
75314204 TAGTTTTAATAGCCCAAAATTGGGTCTAGTTGGAACAGAGGTTTCGGGACCACAAAATCTGAGAT
1 TAGTTGTAATAGCCCAAAATTGGGTCTAGTTGGAACAGAGGTTTCGGGACCACAAAATATGAGAT
75314269 ATAAATAATT
66 ATAAATAATT
* *
75314279 TAGTTGTAATAGCCCAAAATTGGGTCTAGTTGGAACAGAGGTTTTGGGACCATAAAATATGAGAT
1 TAGTTGTAATAGCCCAAAATTGGGTCTAGTTGGAACAGAGGTTTCGGGACCACAAAATATGAGAT
75314344 ATAAATAATT
66 ATAAATAATT
75314354 ATTTTATGAT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (75 bp):
TAGTTGTAATAGCCCAAAATTGGGTCTAGTTGGAACAGAGGTTTCGGGACCACAAAATATGAGAT
ATAAATAATT
Found at i:75315880 original size:63 final size:63
Alignment explanation
Indices: 75315800--75315982 Score: 183
Period size: 63 Copynumber: 2.8 Consensus size: 63
75315790 AGACATTATG
* * *
75315800 ATGTAGCTAGGTCGCATGGGTGATATATGTGTACACCATGTAGACAAGAGAGCTAAGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTATATGTGTACACCATGTAGACAAGAGAGCTAAGAGATAA
* * * *
75315863 ATGTAGCTAGGTCGCATGCGTGGT-TCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGTGGTAT---A-TG-TGTACACCATGTAGACAAGAGAGCTAAGAGA
75315927 TAA
61 TAA
* * * *
75315930 AT-TGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTA-TATGTGTACACCATGTAG-ACAAGAGAGC
75315983 CAAACTATAT
Statistics
Matches: 98, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
62 2 0.02
63 41 0.42
64 1 0.01
65 2 0.02
66 20 0.20
67 31 0.32
68 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTATATGTGTACACCATGTAGACAAGAGAGCTAAGAGATAA
Found at i:75318113 original size:85 final size:85
Alignment explanation
Indices: 75318017--75318466 Score: 695
Period size: 85 Copynumber: 5.3 Consensus size: 85
75318007 CAATATTGAT
* * * *
75318017 GCCTCTGTCCCAGGCAGGGTCTTACACGAAATCAGATACAATGCCGATGTCCCAGACATGGTCTT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
*
75318082 ATACGTAAATCTCAATCGAG
66 ATACGTAAATTTCAATCGAG
* *
75318102 GCCTGTGTCCCAGATACGATCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
75318167 ATACGTAAATTTCAATCGAG
66 ATACGTAAATTTCAATCGAG
* * * *
75318187 GCCTGTGTCCCAGACATGGTCTTACATGAAATCAGATATGATGTCGATGTCCCAGACATGGTCTT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
* *
75318252 ATATGTAAATTTGAATCGAG
66 ATACGTAAATTTCAATCGAG
* * *
75318272 G-CTGTGTCCCAGACACGGTCTTACATGAAATCAGATACGATGCCGATGTCCCAAACATGGTTTT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
* * *
75318336 ATATGAAAATTTCAATCGAT
66 ATACGTAAATTTCAATCGAG
* *
75318356 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCTAGATATGGTCTT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
75318421 ATACGTAAATTTCAATCGAG
66 ATACGTAAATTTCAATCGAG
*
75318441 GCATGTGTCCCAGACACGGTCTTACA
1 GCCTGTGTCCCAGACACGGTCTTACA
75318467 AATGTCTCAG
Statistics
Matches: 332, Mismatches: 32, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
84 76 0.23
85 256 0.77
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.27
Consensus pattern (85 bp):
GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
ATACGTAAATTTCAATCGAG
Found at i:75318349 original size:169 final size:169
Alignment explanation
Indices: 75318017--75318466 Score: 693
Period size: 169 Copynumber: 2.7 Consensus size: 169
75318007 CAATATTGAT
* * * *
75318017 GCCTCTGTCCCAGGCAGGGTCTTACACGAAATCAGATACAATGCCGATGTCCCAGACATGGTCTT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
* * *
75318082 ATACGTAAATCTCAATCGAGGCCTGTGTCCCAGATACGATCTTACACGAAATCAGATACGATGCC
66 ATACGTAAATTTCAATCGAGG-CTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCC
* *
75318147 GATGTCCCAGACATGGTCTTATACGTAAATTTCAATCGAG
130 GATGTCCCAAACATGGTCTTATACGAAAATTTCAATCGAG
* * * *
75318187 GCCTGTGTCCCAGACATGGTCTTACATGAAATCAGATATGATGTCGATGTCCCAGACATGGTCTT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
* * *
75318252 ATATGTAAATTTGAATCGAGGCTGTGTCCCAGACACGGTCTTACATGAAATCAGATACGATGCCG
66 ATACGTAAATTTCAATCGAGGCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCG
* * *
75318317 ATGTCCCAAACATGGTTTTATATGAAAATTTCAATCGAT
131 ATGTCCCAAACATGGTCTTATACGAAAATTTCAATCGAG
* *
75318356 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCTAGATATGGTCTT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
75318421 ATACGTAAATTTCAATCGAGGCATGTGTCCCAGACACGGTCTTACA
66 ATACGTAAATTTCAATCGAGGC-TGTGTCCCAGACACGGTCTTACA
75318467 AATGTCTCAG
Statistics
Matches: 253, Mismatches: 26, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
169 154 0.61
170 99 0.39
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.27
Consensus pattern (169 bp):
GCCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTT
ATACGTAAATTTCAATCGAGGCTGTGTCCCAGACACGGTCTTACACGAAATCAGATACGATGCCG
ATGTCCCAAACATGGTCTTATACGAAAATTTCAATCGAG
Found at i:75335665 original size:85 final size:85
Alignment explanation
Indices: 75335505--75335675 Score: 218
Period size: 85 Copynumber: 2.0 Consensus size: 85
75335495 TAGGATTCTC
* * * * ** *
75335505 TTTCACCATAGGTAAGACAGTGTTAGAGATAAGGTCAGAATCCAATTTCGGGTGACCCTATGACA
1 TTTCACAATAGGTAAGACAATGTTAAAGATAAGGTCAGAACCCAATTTCGGACGACCCTATAACA
75335570 CACCTTCAACAACACAAGTA
66 CACCTTCAACAACACAAGTA
* * * *
75335590 TTTCACAATAGGTAAGATAATGTTAAAGATAAGGTTAGAACCCAATTTCGGACGATCCTGTAACA
1 TTTCACAATAGGTAAGACAATGTTAAAGATAAGGTCAGAACCCAATTTCGGACGACCCTATAACA
*
75335655 TA-CTTGCAACAACACAAGTA
66 CACCTT-CAACAACACAAGTA
75335675 T
1 T
75335676 GTGGAGCATC
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
84 3 0.04
85 70 0.96
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (85 bp):
TTTCACAATAGGTAAGACAATGTTAAAGATAAGGTCAGAACCCAATTTCGGACGACCCTATAACA
CACCTTCAACAACACAAGTA
Found at i:75339744 original size:15 final size:16
Alignment explanation
Indices: 75339724--75339753 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75339714 TGCATATATA
75339724 TGAGTG-AATTTTATT
1 TGAGTGAAATTTTATT
75339739 TGAGTGAAATTTTAT
1 TGAGTGAAATTTTAT
75339754 GGTTCAGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TGAGTGAAATTTTATT
Found at i:75340030 original size:5 final size:5
Alignment explanation
Indices: 75340020--75340054 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
75340010 ATAATTGTGA
75340020 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
75340055 GAAGAACACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:75345803 original size:29 final size:30
Alignment explanation
Indices: 75345759--75345815 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
75345749 TAATAATTTT
75345759 AAATAAATAAATAAATAAAAAC-AAGAATA
1 AAATAAATAAATAAATAAAAACTAAGAATA
*
75345788 AAATAAA-AAATGAAATCAAAACTAAGAA
1 AAATAAATAAAT-AAATAAAAACTAAGAA
75345816 GTTCGAGGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 4 0.16
29 16 0.64
30 5 0.20
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (30 bp):
AAATAAATAAATAAATAAAAACTAAGAATA
Found at i:75346526 original size:102 final size:103
Alignment explanation
Indices: 75346350--75346564 Score: 317
Period size: 102 Copynumber: 2.1 Consensus size: 103
75346340 TACTTCACAT
* * * *
75346350 GCCCGTGTGT-TCGAACACACGGCTGTGTACCTTGCCTGTGTGGCTTCCTGACTTAATTAAAATT
1 GCCCGTGTGTCTCGAACACACAGCCGTGTACCTTGCCCGTGTGGCTTCCTGACTTAATTAAAAAT
* *
75346414 TGAAATTTAAGCTCTACTTTTCACGCGGCCTTGGACAC
66 TAAAATTTAAGCTCTACTTTTCACACGGCCTTGGACAC
* *
75346452 GCCCGTGTGTCT-GAACACACAGCCGTGTGCCTTGCCCGTGTGGCTTTCTGACTTAATTAAAAAT
1 GCCCGTGTGTCTCGAACACACAGCCGTGTACCTTGCCCGTGTGGCTTCCTGACTTAATTAAAAAT
* * *
75346516 TAAAATTTAAGGTCTAGTTTTCACATGGCCTTGGACAC
66 TAAAATTTAAGCTCTACTTTTCACACGGCCTTGGACAC
75346554 GCCCGTGTGTC
1 GCCCGTGTGTC
75346565 CAGGCAGTAT
Statistics
Matches: 101, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
102 100 0.99
103 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (103 bp):
GCCCGTGTGTCTCGAACACACAGCCGTGTACCTTGCCCGTGTGGCTTCCTGACTTAATTAAAAAT
TAAAATTTAAGCTCTACTTTTCACACGGCCTTGGACAC
Found at i:75350026 original size:30 final size:30
Alignment explanation
Indices: 75349970--75350026 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
75349960 ATCCCGAGCC
*
75349970 TAGGGGCAAAAATGTAAATATGCAAAAGTT
1 TAGGGGCAAAAATGTAAATATCCAAAAGTT
* * *
75350000 TAGGGGCAAAATTGTAATTTTCCAAAA
1 TAGGGGCAAAAATGTAAATATCCAAAA
75350027 TTTGAGTTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.09, G:0.21, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAAATATCCAAAAGTT
Found at i:75350497 original size:46 final size:46
Alignment explanation
Indices: 75350447--75350622 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
75350437 TGGTTGAGCA
75350447 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75350493 TCCGAACTCGTTGAGTTGAGTCAGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75350538 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75350586 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75350623 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75350603 original size:93 final size:93
Alignment explanation
Indices: 75350444--75350615 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
75350434 GGATGGTTGA
* *
75350444 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75350509 TGAGTCAGAGTTCGTGAGATGTAACTAG
66 TGAGTCAGAGTTCGTGAGATGTAACTAG
*
75350537 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
75350602 TGAGTCCGAGTTCG
66 TGAGTCAGAGTTCG
75350616 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCAGAGTTCGTGAGATGTAACTAG
Found at i:75358026 original size:46 final size:46
Alignment explanation
Indices: 75357976--75358149 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
75357966 TGGTTGAGCA
75357976 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75358022 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75358066 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75358114 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75358150 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 9, Indels: 21
0.78 0.06 0.15
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 41 0.38
46 42 0.39
47 7 0.06
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75358139 original size:92 final size:92
Alignment explanation
Indices: 75357973--75358142 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 92
75357963 GGATGGTTGA
*
75357973 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
75358038 TGAGTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCGAGTTCGTGAGATGTAACTAG
*
75358065 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
75358129 TGAGTCCGAGTTCG
66 TGAGT-CGAGTTCG
75358143 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 19 0.25
92 56 0.75
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCGAGTTCGTGAGATGTAACTAG
Found at i:75360653 original size:51 final size:51
Alignment explanation
Indices: 75360534--75360711 Score: 163
Period size: 51 Copynumber: 3.5 Consensus size: 51
75360524 ACTAGTGACT
* * * *
75360534 CAAGTGTGGTACTATGT-AAGGCCGCTTTGAG-AGAGATATAGCTTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTGATCA
*
75360583 CAAATGTGGTA-TATGGTGAA-GCCACTTTGTGAAGAAAGATAGCTTTGATCA
1 CAAGTGTGGTACTAT-GTGAAGGCCACTTTGTGAAGAAAGATAGC-TTGATCA
* * * * *
75360634 CAAGTGTTGTACTATGTGAAGGCCAATTTATGAAG-AAGGTAGATTTGA-CTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAG-CTTGATC-A
*
75360685 CAAG-GATGGTACTATGTGCAGGCCACT
1 CAAGTG-TGGTACTATGTGAAGGCCACT
75360712 GGGTATCCGT
Statistics
Matches: 106, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
48 3 0.03
49 21 0.20
50 13 0.12
51 54 0.51
52 15 0.14
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTGATCA
Found at i:75364293 original size:51 final size:48
Alignment explanation
Indices: 75364238--75364334 Score: 115
Period size: 50 Copynumber: 2.0 Consensus size: 48
75364228 CTACCACATA
*
75364238 ACATGTAA-CACATCCATAATGAACTCGGACCTCTCAACGAGCTTGGATGTT
1 ACATG-AATCACATCC-TAATGAACTCAGACCT-TCAAC-AGCTTGGATGTT
* * *
75364289 ACATGAATCGCATCCTTATGAACTCATACCTTCAACAGCTTGGATG
1 ACATGAATCACATCCTAATGAACTCAGACCTTCAACAGCTTGGATG
75364335 CTGGCATCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
48 10 0.24
49 5 0.12
50 15 0.37
51 11 0.27
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (48 bp):
ACATGAATCACATCCTAATGAACTCAGACCTTCAACAGCTTGGATGTT
Found at i:75377804 original size:52 final size:51
Alignment explanation
Indices: 75377684--75377862 Score: 222
Period size: 51 Copynumber: 3.5 Consensus size: 51
75377674 ACTAGTGACT
* *
75377684 CAAGTGTGGTACTATGTGAAGGCCGCTTTGAGAAG-AGATAGC-TTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGATCA
*
75377733 CAAATGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGATCA
* * * * *
75377785 CAAGTGTTGTACTATGTGAAGGCCAATTTATGAAGAAGGTAGATTTGA-CTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGATC-A
*
75377836 CAAG-GATGGTACTATGTGCAGGCCACT
1 CAAGTG-TGGTACTATGTGAAGGCCACT
75377863 GGGTATCCGT
Statistics
Matches: 113, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
49 32 0.28
50 2 0.02
51 41 0.36
52 38 0.34
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGATCA
Found at i:75377853 original size:51 final size:52
Alignment explanation
Indices: 75377684--75377860 Score: 188
Period size: 52 Copynumber: 3.5 Consensus size: 52
75377674 ACTAGTGACT
** *
75377684 CAAGTGTGGTACTATGTGAAGGCC-GCTT-TG-AGAAGAGATAG-CTTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCAATTTATGAAGAA-AGATAGATTTGATCA
* * * *
75377733 CAAATGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGATCA
1 CAAGTGTGGTACTATGTGAAGGCCAATTTATGAAGAAAGATAGATTTGATCA
* *
75377785 CAAGTGTTGTACTATGTGAAGGCCAATTTATGAAG-AAGGTAGATTTGA-CTA
1 CAAGTGTGGTACTATGTGAAGGCCAATTTATGAAGAAAGATAGATTTGATC-A
*
75377836 CAAG-GATGGTACTATGTGCAGGCCA
1 CAAGTG-TGGTACTATGTGAAGGCCA
75377861 CTGGGTATCC
Statistics
Matches: 110, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
49 23 0.21
50 4 0.04
51 41 0.37
52 42 0.38
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCAATTTATGAAGAAAGATAGATTTGATCA
Done.