Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 105315579
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1369460 characters in sequence are not A, C, G, or T
File 230 of 325
Found at i:75388940 original size:20 final size:21
Alignment explanation
Indices: 75388915--75388954 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
75388905 CACTTGAAGC
75388915 AAGGC-ACACGCCCGTGTGGA
1 AAGGCAACACGCCCGTGTGGA
*
75388935 AAGGCAACACGCTCGTGTGG
1 AAGGCAACACGCCCGTGTGG
75388955 CCACTATGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.25, C:0.28, G:0.35, T:0.12
Consensus pattern (21 bp):
AAGGCAACACGCCCGTGTGGA
Found at i:75393023 original size:47 final size:47
Alignment explanation
Indices: 75392969--75393521 Score: 865
Period size: 47 Copynumber: 11.6 Consensus size: 47
75392959 GTATATTTGA
*
75392969 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75393016 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
75393063 ATGAATGTGAAAGTGTATATATATGTGATAAAGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
75393112 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75393161 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
75393208 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
75393255 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
75393304 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
75393351 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
75393398 ATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
75393445 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
75393492 AT-AGATGTGAAAGTGTATAAATGTGATAAG
1 ATGA-ATGTGAAAGTGTATATATGTGATAAG
75393522 TCCCGAAGGG
Statistics
Matches: 473, Mismatches: 28, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 335 0.71
49 137 0.29
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:75393131 original size:143 final size:142
Alignment explanation
Indices: 75392969--75393521 Score: 887
Period size: 143 Copynumber: 3.9 Consensus size: 142
75392959 GTATATTTGA
*
75392969 ATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTA
1 ATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
75393033 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAAGCC
66 TATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
75393098 GAATGGCCAATGTG
129 GAATGGCCAATGTG
75393112 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
75393177 ATATATGTGATAAGGCCTAATAGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
65 ATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
75393242 AATGGCCAATGTG
130 AATGGCCAATGTG
75393255 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
75393320 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
65 ATATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
*
75393385 AATGGCCGATGTG
130 AATGGCCAATGTG
*
75393398 ATAAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 ATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * *
75393462 TATATGTGACAGGGCCGAGTGGCCAACGTGAT-AGATGTGAAAGTGTATAAATGTGATAAG
66 TATATGTGATAAGGCCGAATAGCCAATGTGATGA-ATGTGAAAGTGTATATATGTGATAAG
75393522 TCCCGAAGGG
Statistics
Matches: 389, Mismatches: 18, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
140 1 0.00
141 99 0.25
143 200 0.51
145 89 0.23
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (142 bp):
ATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
TATATGTGATAAGGCCGAATAGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
ATGGCCAATGTG
Found at i:75394594 original size:48 final size:46
Alignment explanation
Indices: 75394523--75394737 Score: 198
Period size: 46 Copynumber: 4.6 Consensus size: 46
75394513 TTACAGACGC
* * * *
75394523 CATGTCCTAGATAGGTCTTACACTAGCTTGTCTATCGCAAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGC-T-TCTATCTCAAGGCTGATG
* * * * **
75394571 CATGTCCCAGACATGTCTTACACTAGCTCCTGTCTCAATGTTTTTG
1 CATGTCCCAGACATGTCTTACACTAGCTTCTATCTCAAGGCTGATG
* * * **
75394617 CATGTCCTAGACATGTCTTACACTAGCTTAAATATCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTT--CTATCTCAAGGCTGATG
*** *
75394665 CATGTCCCAGACATGTCTTACACTAGC-TCTCATCTTGTGGGTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTCT-ATCTCAAGGCTGATG
*
75394711 CATGTCCGAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
75394738 ACACAATCAC
Statistics
Matches: 136, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
45 1 0.01
46 74 0.54
47 2 0.01
48 59 0.43
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTCTATCTCAAGGCTGATG
Found at i:75394684 original size:94 final size:94
Alignment explanation
Indices: 75394523--75394693 Score: 261
Period size: 94 Copynumber: 1.8 Consensus size: 94
75394513 TTACAGACGC
* *** **
75394523 CATGTCCTAGATAGGTCTTACACTAGCTTGTCTATCGCAAGGCTGATGCATGTCCCAGACATGTC
1 CATGTCCTAGACAGGTCTTACACTAGCTTAAATATCGCAAGGCCAATGCATGTCCCAGACATGTC
75394588 TTACACTAGCTCCTGTCTCAATGTTTTTG
66 TTACACTAGCTCCTGTCTCAATGTTTTTG
* * *
75394617 CATGTCCTAGACATGTCTTACACTAGCTTAAATATCTCGAGGCCAATGCATGTCCCAGACATGTC
1 CATGTCCTAGACAGGTCTTACACTAGCTTAAATATCGCAAGGCCAATGCATGTCCCAGACATGTC
75394682 TTACACTAGCTC
66 TTACACTAGCTC
75394694 TCATCTTGTG
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 68 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.32
Consensus pattern (94 bp):
CATGTCCTAGACAGGTCTTACACTAGCTTAAATATCGCAAGGCCAATGCATGTCCCAGACATGTC
TTACACTAGCTCCTGTCTCAATGTTTTTG
Found at i:75394713 original size:94 final size:94
Alignment explanation
Indices: 75394523--75394737 Score: 254
Period size: 94 Copynumber: 2.3 Consensus size: 94
75394513 TTACAGACGC
* * *** **
75394523 CATGTCCTAGATAGGTCTTACACTAGCTTGTCTATCGCAAGGCTGATGCATGTCCCAGACATGTC
1 CATGTCCTAGACATGTCTTACACTAGCTTAAATATCGCAAGGCCAATGCATGTCCCAGACATGTC
* * **
75394588 TTACACTAGCTCCTGTCTCAATGTTTTTG
66 TTACACTAGCTCCTATCTCAATGGTGATG
* *
75394617 CATGTCCTAGACATGTCTTACACTAGCTTAAATATCTCGAGGCCAATGCATGTCCCAGACATGTC
1 CATGTCCTAGACATGTCTTACACTAGCTTAAATATCGCAAGGCCAATGCATGTCCCAGACATGTC
**
75394682 TTACACTAGCT-CTCATCT-TGTGGGTGATG
66 TTACACTAGCTCCT-ATCTCAAT-GGTGATG
*
75394711 CATGTCCGAGACATGTCTTACACTAGC
1 CATGTCCTAGACATGTCTTACACTAGC
75394738 ACACAATCAC
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
93 3 0.03
94 100 0.97
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (94 bp):
CATGTCCTAGACATGTCTTACACTAGCTTAAATATCGCAAGGCCAATGCATGTCCCAGACATGTC
TTACACTAGCTCCTATCTCAATGGTGATG
Found at i:75395786 original size:25 final size:25
Alignment explanation
Indices: 75395752--75395809 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
75395742 AAAATAGGAC
*
75395752 TTTTTCACTTTATTCGATTTAGTCA
1 TTTTTCACTTTATGCGATTTAGTCA
*
75395777 TTTTTCACTTTATGCGATTTAGTCC
1 TTTTTCACTTTATGCGATTTAGTCA
75395802 TTTTTCAC
1 TTTTTCAC
75395810 AATTAAGCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.17, C:0.19, G:0.09, T:0.55
Consensus pattern (25 bp):
TTTTTCACTTTATGCGATTTAGTCA
Found at i:75404699 original size:46 final size:46
Alignment explanation
Indices: 75404632--75404842 Score: 209
Period size: 46 Copynumber: 4.5 Consensus size: 46
75404622 ATATGTGTGT
75404632 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGC
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGC
* *
75404678 CAGTGTAAGACATATCTGGGACATGCATCGGTCACATTATAAGAGC
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGC
* * * *
75404724 CACTGTAAGACATGTTTGGGACATGCATCAG---CATTA-AGACGAGGGT
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATA-A-GA--GC
* * *
75404770 TAGTGTAAGACATGTCTGGGACATGCATTGGCCTTGAGA-TATACA-AGC
1 CAGTGTAAGACATGTCTGGGACATGCATCGGCC---ACATTATA-AGAGC
* *
75404818 TAGTGTAAGACTTGTCTGGGACATG
1 CAGTGTAAGACATGTCTGGGACATG
75404843 GCGTCAGCTT
Statistics
Matches: 138, Mismatches: 16, Indels: 20
0.79 0.09 0.11
Matches are distributed among these distances:
42 1 0.01
43 6 0.04
44 2 0.01
46 98 0.71
48 25 0.18
50 1 0.01
51 2 0.01
52 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (46 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGC
Found at i:75404931 original size:49 final size:49
Alignment explanation
Indices: 75404865--75405033 Score: 155
Period size: 49 Copynumber: 3.5 Consensus size: 49
75404855 TGTGTGTCAG
*
75404865 TGTAAGACCTATT-TGGGACATGGCATCGACATCGATAGATGAGAGCCAA
1 TGTAAGACCT-TTCTGGGACATGGCATCGACATCGATAGATGAAAGCCAA
* * * * * * ** *
75404914 TGTAAGACCTTTCTGGGACACGACATCGGCCTCAATATATGAAAGTTAG
1 TGTAAGACCTTTCTGGGACATGGCATCGACATCGATAGATGAAAGCCAA
* * * **
75404963 TGTAAGACCTATCTGGGACATGGCATCGACTTTGAT-G-TGCTAGCCAA
1 TGTAAGACCTTTCTGGGACATGGCATCGACATCGATAGATGAAAGCCAA
*
75405010 TGTAAGACCATGTCTGGGACATGG
1 TGTAAGACC-TTTCTGGGACATGG
75405034 TGTCGGCATC
Statistics
Matches: 94, Mismatches: 24, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
47 14 0.15
48 15 0.16
49 65 0.69
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (49 bp):
TGTAAGACCTTTCTGGGACATGGCATCGACATCGATAGATGAAAGCCAA
Found at i:75413069 original size:27 final size:27
Alignment explanation
Indices: 75413021--75413179 Score: 159
Period size: 27 Copynumber: 5.9 Consensus size: 27
75413011 GCGAGGCTGC
* *
75413021 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
75413048 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
75413074 CAGATATATGTGGCAGAGCCATCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
75413101 CAGATAATTGTGGCATAGCCACC--ATGA
1 CAGAT-ATTGTGGCAGAGCCACCAGAT-A
*
75413128 CAGATATATGTGGCAAAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
75413155 TAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
75413180 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
25 2 0.02
26 10 0.09
27 95 0.83
28 5 0.04
29 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:75413114 original size:54 final size:53
Alignment explanation
Indices: 75413021--75413179 Score: 214
Period size: 54 Copynumber: 3.0 Consensus size: 53
75413011 GCGAGGCTGC
* * * *
75413021 CAGATAT-TGTGACGAAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAG-A
* *
75413074 CAGATATATGTGGCAGAGCCATCAGATCAGATAATTGTGGCATAGCCACCATGA
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCA-GA
*
75413128 CAGATATATGTGGCAAAGCCACCAGATTAGATAATTGTGGCATAGCCACCAG
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
75413180 GACGCTTCCT
Statistics
Matches: 94, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
53 13 0.14
54 80 0.85
55 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (53 bp):
CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGA
Found at i:75415685 original size:45 final size:46
Alignment explanation
Indices: 75415611--75415969 Score: 225
Period size: 49 Copynumber: 7.6 Consensus size: 46
75415601 TGTGCTAGTA
*
75415611 TAAGACATGTCTGGGACATGCATCAGCCACATTATAAGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGCCAGTG
*
75415657 TAAGACATGTCT-TGACATGCATCGGCCACATTATAAGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGCCAGTG
* * * **
75415702 TAAAACATGTTTGGGACATACATCGG---CATTAATACGAGAGTTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCCACATT-ATA--AGAGCCAGTG
* *
75415748 TAAGACATGTCTGGGACATGCATCGGCCTTGAGA-TATACA-AGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCC---ACATTATA-AGAGCCAGTG
* * * * * * *
75415796 TAATACCTATCTGGGACATGGCATC-GACACCGATAGATGAGAGCCACTG
1 TAAGACATGTCTGGGACAT-GCATCGGCCA-C-AT-TATAAGAGCCAGTG
* * * * * *
75415845 TAAGACCTTTCTGGGACACGACATCGGCCTCGATATATAAAAGTCAGTG
1 TAAGACATGTCTGGGACATG-CATCGGCCAC-AT-TATAAGAGCCAGTG
* * * **
75415894 TAAGACCTATCTGGGACATGGCATC-G--ACTTTGATGTGCTAGCCAGTG
1 TAAGACATGTCTGGGACAT-GCATCGGCCACATT-ATAAG--AGCCAGTG
75415941 TAAGACCATGTCTGGGACATGGCATCGGC
1 TAAGA-CATGTCTGGGACAT-GCATCGGC
75415970 ATTTTATCCC
Statistics
Matches: 245, Mismatches: 43, Indels: 46
0.73 0.13 0.14
Matches are distributed among these distances:
43 4 0.02
44 4 0.02
45 45 0.18
46 55 0.22
47 13 0.05
48 46 0.19
49 70 0.29
50 6 0.02
51 1 0.00
52 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCGGCCACATTATAAGAGCCAGTG
Found at i:75415905 original size:98 final size:97
Alignment explanation
Indices: 75415746--75415969 Score: 265
Period size: 98 Copynumber: 2.3 Consensus size: 97
75415736 CGAGAGTTAG
* * * *
75415746 TGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATACAAGCTAGTGTAATACCTATCTGGG
1 TGTAAGACATGTCTGGGACACGCATCGGCCTCGAGATATAAAAGCTAGTGTAAGACCTATCTGGG
75415811 ACATGGCATCGACACCGATAGATGAGAGCCAC
66 ACATGGCATCGACACCGATAGATGAGAGCCAC
* * *
75415843 TGTAAGACCTTTCTGGGACACGACATCGGCCTCGATATATAAAAG-TCAGTGTAAGACCTATCTG
1 TGTAAGACATGTCTGGGACACG-CATCGGCCTCGAGATATAAAAGCT-AGTGTAAGACCTATCTG
*** ** *
75415907 GGACATGGCATCGACTTTGAT-G-TGCTAGCCAG
64 GGACATGGCATCGACACCGATAGATGAGAGCCAC
*
75415939 TGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGA-CATGTCTGGGACA-CGCATCGGC
75415970 ATTTTATCCC
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
96 14 0.13
97 39 0.36
98 54 0.50
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (97 bp):
TGTAAGACATGTCTGGGACACGCATCGGCCTCGAGATATAAAAGCTAGTGTAAGACCTATCTGGG
ACATGGCATCGACACCGATAGATGAGAGCCAC
Found at i:75417395 original size:46 final size:46
Alignment explanation
Indices: 75417339--75417511 Score: 165
Period size: 46 Copynumber: 3.7 Consensus size: 46
75417329 TGGTTGAGCA
*
75417339 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
75417385 TCCGAGCTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
75417432 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
75417478 -CTCGAGCTCATTGAGTTGAGTCTGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75417512 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 56 0.55
47 27 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:75417495 original size:93 final size:93
Alignment explanation
Indices: 75417336--75417506 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
75417326 GCATGGTTGA
* *
75417336 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCATTGAGT
75417401 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCTGAGTTCGTGAGATGTAACTAG
* *
75417429 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CTCGAGCTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CGAGCTCATTGAG
75417493 TTGAGTCTGAGTTC
65 TTGAGTCTGAGTTC
75417507 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAGCTCATTGAGT
TGAGTCTGAGTTCGTGAGATGTAACTAG
Found at i:75425076 original size:25 final size:27
Alignment explanation
Indices: 75425000--75425098 Score: 141
Period size: 26 Copynumber: 3.7 Consensus size: 27
75424990 AAACACATTA
75425000 GAAAATGAAAGCCTTTGTGGCGAACCAT
1 GAAAA-GAAAGCCTTTGTGGCGAACCAT
75425028 GAAAAGAAAG-CTTTGTGGCGAACCAT
1 GAAAAGAAAGCCTTTGTGGCGAACCAT
*
75425054 G-AAAGAAAGCCTTTGT-GCAAACCAT
1 GAAAAGAAAGCCTTTGTGGCGAACCAT
* *
75425079 GAAAATAAAGCCTTTATGGC
1 GAAAAGAAAGCCTTTGTGGC
75425099 AAATCTTTGA
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
25 17 0.26
26 36 0.55
27 7 0.11
28 5 0.08
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (27 bp):
GAAAAGAAAGCCTTTGTGGCGAACCAT
Found at i:75425214 original size:27 final size:27
Alignment explanation
Indices: 75425184--75425268 Score: 98
Period size: 27 Copynumber: 3.1 Consensus size: 27
75425174 CCTCTGTGGA
* *
75425184 GAACTTTAAAAGAATGGTACTCATGGC
1 GAACTATAAAGGAATGGTACTCATGGC
* * * *
75425211 GAACCATAATGGAATGGTACTTAGGGC
1 GAACTATAAAGGAATGGTACTCATGGC
* *
75425238 GAACTATGAAGGAATGGTATTCATGGC
1 GAACTATAAAGGAATGGTACTCATGGC
75425265 GAAC
1 GAAC
75425269 AACGAAAGAA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (27 bp):
GAACTATAAAGGAATGGTACTCATGGC
Found at i:75427372 original size:9 final size:9
Alignment explanation
Indices: 75427358--75427383 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
75427348 GTGTAAGGAA
75427358 ATTTTGTGT
1 ATTTTGTGT
75427367 ATTTTGTGT
1 ATTTTGTGT
75427376 ATTTTGTG
1 ATTTTGTG
75427384 AATTAGGGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.23, T:0.65
Consensus pattern (9 bp):
ATTTTGTGT
Found at i:75427950 original size:43 final size:43
Alignment explanation
Indices: 75427796--75427951 Score: 174
Period size: 43 Copynumber: 3.6 Consensus size: 43
75427786 TGTGTTTTTG
* * *
75427796 GTAAGACCGCGTCTGGGACATTGGCATCGACT-TATGATTTACGT
1 GTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTACAT
* * *
75427840 GTAAGACCATGTCTGGGACATCGGCATCG-TATTTGATTTCAT
1 GTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACAT
* *
75427882 GTAAGACC-CTGTTTGGGACAGTGGCATCGATATTTGATTACAT
1 GTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTACAT
* *
75427925 GTAAGACCACGTCTGGAACGTTGGCAT
1 GTAAGACCACGTCTGGGACATTGGCAT
75427952 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 29 0.31
43 37 0.40
44 27 0.29
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
GTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACAT
Found at i:75435203 original size:17 final size:17
Alignment explanation
Indices: 75435181--75435214 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
75435171 TATTCTCATT
*
75435181 GTCATATGTTGACATGG
1 GTCATATGATGACATGG
75435198 GTCATATGATGACATGG
1 GTCATATGATGACATGG
75435215 CTCTTTACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.32
Consensus pattern (17 bp):
GTCATATGATGACATGG
Found at i:75439007 original size:46 final size:46
Alignment explanation
Indices: 75438952--75439084 Score: 169
Period size: 46 Copynumber: 2.9 Consensus size: 46
75438942 ATAATTTCAC
* * *
75438952 CCATAATGAACTCGGAACGCAACTCAAAGAGCTCGGGTG-TTCACAT
1 CCATAATGAACTCGGAACACAACTCAAAGAGTTCGGATGCTT-ACAT
* * * *
75438998 CTATAATGAACTCGGAACACAACTGAATGAGTTCGGATGCTTGCAT
1 CCATAATGAACTCGGAACACAACTCAAAGAGTTCGGATGCTTACAT
*
75439044 CCATAAGTGAACTCGGAACACAACTCAACGAGTTCGGATGC
1 CCATAA-TGAACTCGGAACACAACTCAAAGAGTTCGGATGC
75439085 CTCATAATTC
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
46 41 0.55
47 34 0.45
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAATGAACTCGGAACACAACTCAAAGAGTTCGGATGCTTACAT
Found at i:75439061 original size:47 final size:47
Alignment explanation
Indices: 75438952--75439129 Score: 173
Period size: 47 Copynumber: 3.8 Consensus size: 47
75438942 ATAATTTCAC
* * *
75438952 CCATAATGAACTCGGAACGCAACTCAAAGAGCTCGGGTG-TTCACAT
1 CCATAATGAACTCGGAACACAACTCAAAGAGTTCGGATGCTTCACAT
* * * *
75438998 CTATAATGAACTCGGAACACAACTGAATGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACACAACTCAAAGAGTTCGGATGCTTCACAT
* * *
75439044 CCATAAGTGAACTCGGAACACAACTCAACGAGTTCGGATGCCTCATAAT
1 CCATAA-TGAACTCGGAACACAACTCAAAGAGTTCGGATGCTTCA-CAT
* * * * * *
75439093 TC-TCACGAACTCGGAACGCAACTGAACGAGTTCGGAT
1 CCATAATGAACTCGGAACACAACTCAAAGAGTTCGGAT
75439130 CTCAATTTCC
Statistics
Matches: 110, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
46 41 0.37
47 64 0.58
48 2 0.02
49 3 0.03
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (47 bp):
CCATAATGAACTCGGAACACAACTCAAAGAGTTCGGATGCTTCACAT
Found at i:75446125 original size:47 final size:47
Alignment explanation
Indices: 75446000--75446132 Score: 171
Period size: 46 Copynumber: 2.9 Consensus size: 47
75445990 ATAATTTCAC
* * *
75446000 CCATAATGAACTCGGAACACAACTCAACGAGCTCGGGTG-TTCACAT
1 CCATAATGAACTCAGAACACAACTCAACGAGTTCGGATGCTTCACAT
* * *
75446046 CCATAATGAACTCAGAACACAACGCAATGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCAGAACACAACTCAACGAGTTCGGATGCTTCACAT
* *
75446092 CCATAAGTGAACTCAGAACGCAATTCAACGAGTTCGGATGC
1 CCATAA-TGAACTCAGAACACAACTCAACGAGTTCGGATGC
75446133 CTTATAATTC
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
46 43 0.57
47 32 0.43
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (47 bp):
CCATAATGAACTCAGAACACAACTCAACGAGTTCGGATGCTTCACAT
Found at i:75454761 original size:30 final size:30
Alignment explanation
Indices: 75454727--75454830 Score: 104
Period size: 30 Copynumber: 3.3 Consensus size: 30
75454717 GAATTGCCAT
75454727 TGATGAATTCATGTGTTTTTGAATGTTTGA
1 TGATGAATTCATGTGTTTTTGAATGTTTGA
* * *
75454757 TGATGAATT-GTGAAAGCTTAGTTGTGAAT-TTTCGT
1 TGATGAATTCATG--TG-TT--TT-TGAATGTTT-GA
75454792 TGATGAATTCATGTGTTTTTGAATGTTTGA
1 TGATGAATTCATGTGTTTTTGAATGTTTGA
75454822 TGATGAATT
1 TGATGAATT
75454831 ATGAAAGCTT
Statistics
Matches: 59, Mismatches: 6, Indels: 18
0.71 0.07 0.22
Matches are distributed among these distances:
29 2 0.03
30 24 0.41
31 6 0.10
32 2 0.03
33 2 0.03
34 6 0.10
35 15 0.25
36 2 0.03
ACGTcount: A:0.25, C:0.04, G:0.24, T:0.47
Consensus pattern (30 bp):
TGATGAATTCATGTGTTTTTGAATGTTTGA
Found at i:75454796 original size:65 final size:65
Alignment explanation
Indices: 75454712--75454843 Score: 228
Period size: 65 Copynumber: 2.0 Consensus size: 65
75454702 TATTGATGAT
*
75454712 GTTGTGAATTGCCATTGATGAATTCATGTGTTTTTGAATGTTTGATGATGAATTGTGAAAGCTTA
1 GTTGTGAATTGCCATTGATGAATTCATGTGTTTTTGAATGTTTGATGATGAATTATGAAAGCTTA
** *
75454777 GTTGTGAATTTTCGTTGATGAATTCATGTGTTTTTGAATGTTTGATGATGAATTATGAAAGCTTA
1 GTTGTGAATTGCCATTGATGAATTCATGTGTTTTTGAATGTTTGATGATGAATTATGAAAGCTTA
75454842 GT
1 GT
75454844 GATAGATATC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (65 bp):
GTTGTGAATTGCCATTGATGAATTCATGTGTTTTTGAATGTTTGATGATGAATTATGAAAGCTTA
Found at i:75455493 original size:43 final size:43
Alignment explanation
Indices: 75455419--75455584 Score: 151
Period size: 43 Copynumber: 3.9 Consensus size: 43
75455409 GTTACTGATA
* *** *
75455419 TGTGATTACATGTAAGACCATGTCCATGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATTTCTGGGACATTGGCATCGTAT
* * *
75455462 TGTGATTACGTGTAAGACCATTTTTGGGACATTTGCATCGTTAT
1 TGTGATTACATGTAAGACCATTTCTGGGACATTGGCATCG-TAT
* * *
75455506 T-TGATTTCGTGTAAGACC-TTGTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATT-TCTGGGACATTGGCATCGTAT
* * *
75455547 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 -TGTGATTACATGTAAGACCATTTCTGGGACATTGGCAT
75455585 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 9 0.09
43 85 0.84
44 5 0.05
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATTTCTGGGACATTGGCATCGTAT
Found at i:75473598 original size:43 final size:43
Alignment explanation
Indices: 75473545--75473627 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
75473535 AAGATATGTG
* * *
75473545 GCATCGGAGCTCGTTGATAGGTTCGAGTTCATTATGGATGCAA
1 GCATCCGAGCTCGTTGACAGGTTCGAGTTCATAATGGATGCAA
*
75473588 GCATCCGAGCTTGTTGACAGGTTCGAGTTCATAATGGATG
1 GCATCCGAGCTCGTTGACAGGTTCGAGTTCATAATGGATG
75473628 TGATTCATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGACAGGTTCGAGTTCATAATGGATGCAA
Found at i:75475564 original size:45 final size:45
Alignment explanation
Indices: 75475501--75475591 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
75475491 AGATTATGTG
* *
75475501 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTAAGTTGCGGTCTGAGTTCATGATATATGTGAC
* *
75475546 ATCTGAACTCGTTAAGTTGCGGTCTGAGTTCATGATGTATGTGAC
1 ATCTGAACTCATTAAGTTGCGGTCTGAGTTCATGATATATGTGAC
75475591 A
1 A
75475592 CATGTTTTGG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.24, C:0.14, G:0.25, T:0.36
Consensus pattern (45 bp):
ATCTGAACTCATTAAGTTGCGGTCTGAGTTCATGATATATGTGAC
Found at i:75480555 original size:43 final size:44
Alignment explanation
Indices: 75480507--75480611 Score: 142
Period size: 43 Copynumber: 2.4 Consensus size: 44
75480497 GTTACCGATA
*
75480507 TGTGATTACATGTAAGACCAAGTTTGGGACATTGGCATTG-TAT
1 TGTGATTACATGTAAGACCAAGTTTGGGACATTGGCATCGTTAT
* * *
75480550 TGTGATTACGTGCAAGACCATGTTTGGGACATTGGCATCGTTAT
1 TGTGATTACATGTAAGACCAAGTTTGGGACATTGGCATCGTTAT
* *
75480594 T-CGATTTCATGTAAGACC
1 TGTGATTACATGTAAGACC
75480612 CTGTCTAAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 49 0.92
44 4 0.08
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (44 bp):
TGTGATTACATGTAAGACCAAGTTTGGGACATTGGCATCGTTAT
Found at i:75481445 original size:22 final size:20
Alignment explanation
Indices: 75481420--75481468 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
75481410 GTTATGTAAG
*
75481420 TTTGATGATTTTGGCATATTGA
1 TTTGATG-TTTTGGC-TATGGA
75481442 TTTGGTATGTTTTGGCTATGGA
1 TTT-G-ATGTTTTGGCTATGGA
75481464 TTTGA
1 TTTGA
75481469 GTAGTTAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
21 1 0.04
22 11 0.46
23 8 0.33
24 3 0.12
ACGTcount: A:0.18, C:0.04, G:0.27, T:0.51
Consensus pattern (20 bp):
TTTGATGTTTTGGCTATGGA
Found at i:75483168 original size:43 final size:42
Alignment explanation
Indices: 75483002--75483168 Score: 115
Period size: 43 Copynumber: 4.0 Consensus size: 42
75482992 TCATAAGCTC
* * * * *
75483002 GTACAATGTC-ATATCCCAGATATGGTCTTACATGTTATCTA
1 GTACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTA
* * * * * *
75483043 ATATCGATGCCACTGTCCCTGACA-GGATCTTACACGAAATCGA
1 GTA-CAATGCCAATGTCCCAGACATGG-TCTTACACGTAATCTA
* * ** * *
75483086 TTAACAGTGCTTATGTCTC-GACATGGTCTTACACATAATCTCA
1 GT-ACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCT-A
*
75483129 GTACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 GTACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC
75483169 ACATTTTGGT
Statistics
Matches: 91, Mismatches: 28, Indels: 12
0.69 0.21 0.09
Matches are distributed among these distances:
41 2 0.02
42 35 0.38
43 53 0.58
44 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (42 bp):
GTACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTA
Found at i:75486986 original size:19 final size:19
Alignment explanation
Indices: 75486959--75487008 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
75486949 TGGGTTCGGG
*
75486959 ACACAGGCGTGTCCCTAGC
1 ACACGGGCGTGTCCCTAGC
75486978 ACACGGGCGTGTCCCTAGC
1 ACACGGGCGTGTCCCTAGC
75486997 ACACGGGCGTGT
1 ACACGGGCGTGT
75487009 GCTCTATACC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (19 bp):
ACACGGGCGTGTCCCTAGC
Found at i:75488161 original size:44 final size:46
Alignment explanation
Indices: 75487955--75488169 Score: 213
Period size: 46 Copynumber: 4.7 Consensus size: 46
75487945 AGATTTGTGT
* * * ***
75487955 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTTA
* * * * **
75488003 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCAC-AGTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAG-ATGTTA
*
75488049 GCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
* *
75488095 GCCAGTGTCAGACATGTCTGGGACATGCGTCGG-CTGCGAGATG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTTA
* *
75488139 GCTAGTGTAAGACATGTTTGGGACATGCATC
1 GCCAGTGTAAGACATGTCTGGGACATGCATC
75488170 AGCACGGTTA
Statistics
Matches: 144, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
44 27 0.19
45 5 0.03
46 86 0.60
47 15 0.10
48 11 0.08
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTA
Found at i:75490212 original size:8 final size:8
Alignment explanation
Indices: 75490201--75490230 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
75490191 GGGGCAAAAG
75490201 TGCAAATA
1 TGCAAATA
*
75490209 TGCAAAAA
1 TGCAAATA
75490217 TGCAAATA
1 TGCAAATA
75490225 TGCAAA
1 TGCAAA
75490231 AGTTTAGGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.20
Consensus pattern (8 bp):
TGCAAATA
Found at i:75490215 original size:16 final size:16
Alignment explanation
Indices: 75490194--75490233 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
75490184 GAACCTTGGG
75490194 GCAAAAGTGCAAATAT
1 GCAAAAGTGCAAATAT
*
75490210 GCAAAAATGCAAATAT
1 GCAAAAGTGCAAATAT
75490226 GCAAAAGT
1 GCAAAAGT
75490234 TTAGGGGTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.53, C:0.12, G:0.17, T:0.17
Consensus pattern (16 bp):
GCAAAAGTGCAAATAT
Found at i:75491037 original size:50 final size:49
Alignment explanation
Indices: 75490916--75491091 Score: 212
Period size: 50 Copynumber: 3.5 Consensus size: 49
75490906 TGAGGTCGCA
* * * *
75490916 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
**
75490967 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
75491017 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
75491066 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
75491092 TGCGTACTAG
Statistics
Matches: 110, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 31 0.28
50 43 0.39
51 31 0.28
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:75504095 original size:30 final size:29
Alignment explanation
Indices: 75504052--75504112 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
75504042 CAAGTAGCCG
*
75504052 AAGCTAGTTAAATCTCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
75504081 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
75504111 AA
1 AA
75504113 ACTTTCGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:75505455 original size:12 final size:12
Alignment explanation
Indices: 75505433--75505467 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
75505423 ATTGAATAAA
*
75505433 TAAATAAAATAT
1 TAAACAAAATAT
*
75505445 TAAACAGAATAT
1 TAAACAAAATAT
75505457 TAAACAAAATA
1 TAAACAAAATA
75505468 GTTTTTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.26
Consensus pattern (12 bp):
TAAACAAAATAT
Found at i:75507784 original size:46 final size:46
Alignment explanation
Indices: 75507717--75507865 Score: 201
Period size: 46 Copynumber: 3.2 Consensus size: 46
75507707 CTTTAGGGAG
75507717 ATAAAATTTGTGGTTTCTTCCATCCATCCCATTGTAACTCAAGGGT
1 ATAAAATTTGTGGTTTCTTCCATCCATCCCATTGTAACTCAAGGGT
75507763 ATAAAATTTGTGGTTTCTTCCATCCATCCCATTGTAACTCAAGGGT
1 ATAAAATTTGTGGTTTCTTCCATCCATCCCATTGTAACTCAAGGGT
* ** * * * * *
75507809 ATAAGATTT-TTATCATCTTCAATCCATCCCACTGCAACTCAGGGGT
1 ATAAAATTTGTGGT-TTCTTCCATCCATCCCATTGTAACTCAAGGGT
*
75507855 ATAAGATTTGT
1 ATAAAATTTGT
75507866 ATCTTCCTCA
Statistics
Matches: 93, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
45 2 0.02
46 90 0.97
47 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (46 bp):
ATAAAATTTGTGGTTTCTTCCATCCATCCCATTGTAACTCAAGGGT
Found at i:75507877 original size:46 final size:46
Alignment explanation
Indices: 75507731--75507901 Score: 200
Period size: 46 Copynumber: 3.7 Consensus size: 46
75507721 AATTTGTGGT
* * * *
75507731 TTCTTCCATCCATCCCATTGTAACTCAAGGGTATAAAATTTGTGGT-
1 TTCTTCAATCCATCCCACTGTAACTCAAGGGTATAAGATTTGT-ATC
* * *
75507777 TTCTTCCATCCATCCCATTGTAACTCAAGGGTATAAGATTTTTATC
1 TTCTTCAATCCATCCCACTGTAACTCAAGGGTATAAGATTTGTATC
* * *
75507823 ATCTTCAATCCATCCCACTGCAACTCAGGGGTATAAGATTTGTATC
1 TTCTTCAATCCATCCCACTGTAACTCAAGGGTATAAGATTTGTATC
* * * *
75507869 TTCCTCAATACATCCCACTATAACTCAGGGGTA
1 TTCTTCAATCCATCCCACTGTAACTCAAGGGTA
75507902 CAGGTTTGTG
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 1 0.01
46 109 0.99
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.34
Consensus pattern (46 bp):
TTCTTCAATCCATCCCACTGTAACTCAAGGGTATAAGATTTGTATC
Found at i:75515385 original size:40 final size:40
Alignment explanation
Indices: 75515333--75515501 Score: 143
Period size: 40 Copynumber: 4.2 Consensus size: 40
75515323 AAGTCGACTC
*
75515333 TTAG-CACCGGCTCAAAAGCCCTTC-AGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
75515371 TTAGACTACTGGCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * * *
75515411 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCAGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTC-G-GA
75515456 TTAG-CACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
75515495 TTTAGAC
1 -TTAGAC
75515502 CCCGATTAGC
Statistics
Matches: 104, Mismatches: 12, Indels: 27
0.73 0.08 0.19
Matches are distributed among these distances:
38 4 0.04
39 2 0.02
40 34 0.33
41 32 0.31
42 17 0.16
43 11 0.11
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:75515481 original size:41 final size:40
Alignment explanation
Indices: 75515333--75515481 Score: 133
Period size: 42 Copynumber: 3.6 Consensus size: 40
75515323 AAGTCGACTC
* * * * *
75515333 TTAGCACCGGCTCAAAAGCCCTTC-AGACCAAGCTCG-GA
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGTTA
* * * *
75515371 TTAGACTACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTA
1 TTAG-C-ACTGGCTCAAAAGCCCTTCGAAACTAAGTTC-GTTA
*
75515414 TGA-CACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCAGTTA
1 TTAGCACTGGCTC--AAAAGCCCTTCGAAACTAAGTTC-GTTA
75515456 TTAGCACTGGCTCAAAAGCCCTTCGA
1 TTAGCACTGGCTCAAAAGCCCTTCGA
75515482 GACCAAGCTC
Statistics
Matches: 87, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
38 4 0.05
39 1 0.01
40 24 0.28
41 20 0.23
42 26 0.30
43 12 0.14
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTTCGTTA
Found at i:75521562 original size:25 final size:25
Alignment explanation
Indices: 75521532--75521582 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
75521522 AGCAAGGAGA
75521532 TAGTACACTTTAGGCATTCATCGGG
1 TAGTACACTTTAGGCATTCATCGGG
75521557 TAGTACACTTTAGGCATTCATCGGG
1 TAGTACACTTTAGGCATTCATCGGG
75521582 T
1 T
75521583 GTGCAAGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (25 bp):
TAGTACACTTTAGGCATTCATCGGG
Found at i:75523751 original size:41 final size:40
Alignment explanation
Indices: 75523698--75523867 Score: 143
Period size: 41 Copynumber: 4.2 Consensus size: 40
75523688 AGTTTGACTC
*
75523698 TTAG-CACCGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
* * *
75523737 TTAGACTACTGGCTCGAAGGCCCTTC-AGAACTAAG-TCCGG-
1 TTAGAC-ACTGGCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGA
* * * *
75523777 TTATGACATTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACCAAGCTCGG--A
*
75523822 TTAG-CACTGGCTCAAAAGCCCTTCGAGATCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
75523861 TTTAGAC
1 -TTAGAC
75523868 CCCGATTAGC
Statistics
Matches: 104, Mismatches: 13, Indels: 26
0.73 0.09 0.18
Matches are distributed among these distances:
39 5 0.05
40 18 0.17
41 49 0.47
42 18 0.17
43 10 0.10
44 1 0.01
45 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGA
Found at i:75532267 original size:53 final size:54
Alignment explanation
Indices: 75532123--75532274 Score: 198
Period size: 53 Copynumber: 2.8 Consensus size: 54
75532113 ATTAGGGTTT
*
75532123 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGC
1 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCTACAAGGC
* * * * * * *
75532177 AAGCAAATCATGTAAGACCATGCCAAGGCATGACAATGGTGAGTTC-ATAAGGC
1 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCTACAAGGC
* * *
75532230 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAGTT
75532275 TAAAAAGGAA
Statistics
Matches: 82, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
53 43 0.52
54 39 0.48
ACGTcount: A:0.37, C:0.19, G:0.25, T:0.19
Consensus pattern (54 bp):
AAGGATACCAAGTAAGACCATGCCAAGGCATGGCAATGGTAAGTTCTACAAGGC
Found at i:75538769 original size:15 final size:15
Alignment explanation
Indices: 75538749--75538778 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
75538739 AATTTCATAC
75538749 TTCAATCACCATGTT
1 TTCAATCACCATGTT
75538764 TTCAATCACCATGTT
1 TTCAATCACCATGTT
75538779 ATCACCTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.40
Consensus pattern (15 bp):
TTCAATCACCATGTT
Found at i:75544828 original size:24 final size:23
Alignment explanation
Indices: 75544789--75544835 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
75544779 AACAGCCCAA
*
75544789 ATTTTCCTTCCTTTCACATTTTT
1 ATTTTCCTTCCTTTCAAATTTTT
75544812 ATTTTCCCTTTCC-TTCAAATTTTT
1 ATTTT-CC-TTCCTTTCAAATTTTT
75544836 CCATACAAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 12 0.57
25 4 0.19
ACGTcount: A:0.15, C:0.26, G:0.00, T:0.60
Consensus pattern (23 bp):
ATTTTCCTTCCTTTCAAATTTTT
Found at i:75547113 original size:46 final size:44
Alignment explanation
Indices: 75547032--75547140 Score: 121
Period size: 46 Copynumber: 2.4 Consensus size: 44
75547022 AGTGCTATTG
* *
75547032 TAAGACATGTCTCGGACATGCATCGGCCTCAAGATGTAAGCCAGTA
1 TAAGACATGTCTGGGACATACATCGGCCTCAAGATGT--GCCAGTA
* * * *
75547078 TAAGACATTTCTGGGACATACATCGG-CTACGAGATGTGTCAGTG
1 TAAGACATGTCTGGGACATACATCGGCCT-CAAGATGTGCCAGTA
75547122 TAAGACCATGTCTGGGACA
1 TAAGA-CATGTCTGGGACA
75547141 CAGCAAGGCA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
44 10 0.19
45 14 0.26
46 30 0.56
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATACATCGGCCTCAAGATGTGCCAGTA
Found at i:75559457 original size:13 final size:13
Alignment explanation
Indices: 75559439--75559463 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75559429 TAAAATAAAA
75559439 TTTTCAAAAGTAT
1 TTTTCAAAAGTAT
75559452 TTTTCAAAAGTA
1 TTTTCAAAAGTA
75559464 CGTTTTCACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (13 bp):
TTTTCAAAAGTAT
Found at i:75560228 original size:73 final size:75
Alignment explanation
Indices: 75560110--75560257 Score: 237
Period size: 73 Copynumber: 2.0 Consensus size: 75
75560100 TGATATAAAT
* * *
75560110 AGGTAAAAGAAAATCTGGTAAGTTAATTTATTGAAAACAATATTAAATTTAAAAGAGTTCTAAAA
1 AGGTAAAAGAAAATCTGCTAAGTTAATTTATTGAAAACAAAATTAAATCTAAAAGAGTTCTAAAA
75560175 TTCTTAAAAA
66 TTCTTAAAAA
* *
75560185 AGGT-AAA-AAAATCTGCTATGTTAATTTATTGAAAACAAAATTAAATCTATAAGAGTTCTAAAA
1 AGGTAAAAGAAAATCTGCTAAGTTAATTTATTGAAAACAAAATTAAATCTAAAAGAGTTCTAAAA
75560248 TTCTTAAAAA
66 TTCTTAAAAA
75560258 GAAAATAGAT
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
73 61 0.90
74 3 0.04
75 4 0.06
ACGTcount: A:0.50, C:0.07, G:0.11, T:0.32
Consensus pattern (75 bp):
AGGTAAAAGAAAATCTGCTAAGTTAATTTATTGAAAACAAAATTAAATCTAAAAGAGTTCTAAAA
TTCTTAAAAA
Found at i:75569218 original size:47 final size:47
Alignment explanation
Indices: 75569167--75569555 Score: 526
Period size: 47 Copynumber: 8.1 Consensus size: 47
75569157 TTAGGATTTT
* *
75569167 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
75569214 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
75569265 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATTGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* ** *
75569312 ATGTGATGAATATGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
75569365 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
75569412 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
75569459 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
75569506 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
75569553 ATG
1 ATG
75569556 CGAAACGTGT
Statistics
Matches: 306, Mismatches: 26, Indels: 20
0.87 0.07 0.06
Matches are distributed among these distances:
47 219 0.72
48 1 0.00
49 2 0.01
51 43 0.14
52 1 0.00
53 40 0.13
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:75569392 original size:23 final size:23
Alignment explanation
Indices: 75569365--75569439 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
75569355 CGAATGGCCA
75569365 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
75569388 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
75569412 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
75569435 ATGTG
1 ATGTG
75569440 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:75569398 original size:100 final size:98
Alignment explanation
Indices: 75569167--75569555 Score: 587
Period size: 94 Copynumber: 4.0 Consensus size: 98
75569157 TTAGGATTTT
*
75569167 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
75569232 CGTATATATATGTGTGATAAGGCCGAATGGCCA
66 TGTATATATATGTGTGATAAGGCCGAATGGCCA
* *
75569265 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATTGCCAATGTGATGAATATGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
75569330 TGTATATATATATGCGTGATAAGGCCGAATGGCCA
66 TG--TATATATATGTGTGATAAGGCCGAATGGCCA
75569365 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
***
75569429 ---ATGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGTATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
75569459 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
75569524 TG-A-ATATATGTG-G-TAAGGCCGAATGGCTA
66 TGTATATATATGTGTGATAAGGCCGAATGGCCA
75569553 ATG
1 ATG
75569556 CGAAACGTGT
Statistics
Matches: 267, Mismatches: 19, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
94 104 0.39
95 1 0.00
96 6 0.02
97 1 0.00
98 63 0.24
99 1 0.00
100 91 0.34
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (98 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
TGTATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:75569618 original size:46 final size:46
Alignment explanation
Indices: 75569529--75569619 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
75569519 GAACATGAAT
* * * *
75569529 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
75569575 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
75569620 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:75569872 original size:37 final size:37
Alignment explanation
Indices: 75569764--75569872 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
75569754 GGAAATATAT
* *
75569764 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
75569801 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
75569838 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
75569873 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:75571195 original size:40 final size:40
Alignment explanation
Indices: 75571138--75571462 Score: 483
Period size: 40 Copynumber: 8.2 Consensus size: 40
75571128 GAGAATTGAG
*
75571138 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
75571178 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
75571218 AGTGATATATCCGGGCTAAGTCCCG-AGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
75571257 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
75571297 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
75571337 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
75571377 AGAGTTATA-CCAGGGTTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * * *
75571417 GGTGTTTTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
75571457 GGTGAT
1 AGTGAT
75571463 GTGTATTCGG
Statistics
Matches: 263, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
39 40 0.15
40 221 0.84
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:75571351 original size:119 final size:120
Alignment explanation
Indices: 75571138--75571462 Score: 492
Period size: 119 Copynumber: 2.7 Consensus size: 120
75571128 GAGAATTGAG
*
75571138 AGTGATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
*
75571203 AGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG-AGAGCATTCGTGCT
66 AGGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
75571257 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
*
75571322 AGGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
66 AGGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * * * *
75571377 AGAGTTATA-CCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGTTTTATCCGGGCTAGGTCCC
1 AGTGATATATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
* * * *
75571441 GAAGAGCAATCATGCTGGTGAT
65 GAGGAGCATTCGTGCTAGTGAT
75571463 GTGTATTCGG
Statistics
Matches: 188, Mismatches: 16, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
119 103 0.55
120 85 0.45
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.26
Consensus pattern (120 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AGGAGCATTCGTGCTAGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:75571674 original size:25 final size:25
Alignment explanation
Indices: 75571624--75571674 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
75571614 TGTGTAACAA
* *
75571624 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
75571649 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
75571674 C
1 C
75571675 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:75575286 original size:47 final size:47
Alignment explanation
Indices: 75575232--75575577 Score: 395
Period size: 47 Copynumber: 7.1 Consensus size: 47
75575222 TTAGGATTTT
* * *
75575232 ATGTGATGGATGTGAACATGCGTTTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
75575279 ATGTGATGAATGTGAACCCGTATATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C------ATGCATATGTGTGATAAGGCCGAATGGCCA
** *
75575334 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
75575387 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
75575434 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * *
75575481 ATGTGATGAATGTGAACATGCATATATGAGGTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * * *
75575528 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCTGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
75575575 ATG
1 ATG
75575578 CGAAACGTGT
Statistics
Matches: 272, Mismatches: 19, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
47 177 0.65
49 1 0.00
52 1 0.00
53 50 0.18
54 2 0.01
55 41 0.15
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:75575414 original size:23 final size:23
Alignment explanation
Indices: 75575387--75575461 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
75575377 CGAATGGCCA
75575387 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
75575410 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
75575434 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
75575457 ATGTG
1 ATGTG
75575462 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:75575640 original size:46 final size:46
Alignment explanation
Indices: 75575551--75575641 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
75575541 GAACATGAAT
* ** * *
75575551 ATATGTGGTAAGGCTGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
75575597 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
75575642 TGTATATATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.33, C:0.09, G:0.32, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:75575648 original size:141 final size:140
Alignment explanation
Indices: 75575309--75575626 Score: 347
Period size: 141 Copynumber: 2.2 Consensus size: 140
75575299 TATATATATA
* * * ** *
75575309 TATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATATATGCGTGATAA
1 TATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAA-C---ATGCATATATGAG-G-TAA
** * *
75575374 GGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTG
60 GGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCG
*
75575439 ATGAATGTGAACATGCG
125 A-GAACGTGAACATGCG
* *
75575456 TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGGTAAGGCCGA
1 TATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGAGGTAAGGCCGA
* * *
75575521 ATGGCCAATGTGATGAATGTGAACATGAATATATGTGGTAAGGCTGAATGGCTAATGCGA-AACG
66 ATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACG
*
75575585 TGTATGAGATG-G
131 TG-A--ACATGCG
*
75575597 ATATGTG-G-TAAAGCCAAATGGCTAATGTGA
1 -TATGTGTGATAAAGCCAAATGGCCAATGTGA
75575627 GATATGTACG
Statistics
Matches: 151, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
139 5 0.03
140 20 0.13
141 64 0.42
142 11 0.07
143 10 0.07
146 1 0.01
147 40 0.26
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (140 bp):
TATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGAGGTAAGGCCGA
ATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCAATGCGAGAACG
TGAACATGCG
Found at i:75575836 original size:37 final size:37
Alignment explanation
Indices: 75575786--75575893 Score: 171
Period size: 37 Copynumber: 2.9 Consensus size: 37
75575776 GGAAATATAT
75575786 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75575823 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
75575860 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
75575894 TCGTCTGAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75579994 original size:17 final size:17
Alignment explanation
Indices: 75579957--75580000 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
75579947 CTATTTATTT
*
75579957 TTATTTGTTTATTTTTC
1 TTATTTATTTATTTTTC
75579974 TTATTTATTTA-TTTTC
1 TTATTTATTTATTTTTC
75579990 GTTATTTATTT
1 -TTATTTATTT
75580001 TTATCTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 5 0.20
17 20 0.80
ACGTcount: A:0.16, C:0.05, G:0.05, T:0.75
Consensus pattern (17 bp):
TTATTTATTTATTTTTC
Found at i:75584570 original size:15 final size:15
Alignment explanation
Indices: 75584550--75584581 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
75584540 TGAAGGCTTG
75584550 GTAGATGGTTCATAA
1 GTAGATGGTTCATAA
75584565 GTAGATGGTTCATAA
1 GTAGATGGTTCATAA
75584580 GT
1 GT
75584582 TTTGTCTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.34
Consensus pattern (15 bp):
GTAGATGGTTCATAA
Found at i:75592343 original size:21 final size:23
Alignment explanation
Indices: 75592303--75592344 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
75592293 TCTTTCTTTC
75592303 TCATCACATATCGAAATCCTATG
1 TCATCACATATCGAAATCCTATG
*
75592326 TCATGACATAT-G-AATCCTA
1 TCATCACATATCGAAATCCTA
75592345 GCTATTCCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 1 0.06
23 10 0.56
ACGTcount: A:0.36, C:0.24, G:0.10, T:0.31
Consensus pattern (23 bp):
TCATCACATATCGAAATCCTATG
Found at i:75596800 original size:25 final size:25
Alignment explanation
Indices: 75596771--75596818 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75596761 TTATAATATG
* * *
75596771 AAAATGACCGTTTTTCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
75596796 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
75596819 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:75596869 original size:9 final size:9
Alignment explanation
Indices: 75596857--75596913 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
75596847 TTTGATAAAC
75596857 ATGATATGT
1 ATGATATGT
*
75596866 ATGATATGCAC
1 ATGATATG--T
*
75596877 ATGACATGT
1 ATGATATGT
*
75596886 ATGATATGCAC
1 ATGATATG--T
75596897 ATGATATGT
1 ATGATATGT
75596906 ATGATATG
1 ATGATATG
75596914 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:75596880 original size:20 final size:20
Alignment explanation
Indices: 75596855--75596917 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
75596845 ATTTTGATAA
75596855 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
75596875 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
75596895 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
75596915 ACA
1 ACA
75596918 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:75597026 original size:23 final size:24
Alignment explanation
Indices: 75596971--75597089 Score: 181
Period size: 24 Copynumber: 5.0 Consensus size: 24
75596961 GAGGAAGTGC
75596971 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
75596995 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
75597019 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
75597042 AAAAAGGGCTT-TGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
75597066 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
75597090 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
23 29 0.33
24 43 0.48
25 17 0.19
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:75597041 original size:47 final size:47
Alignment explanation
Indices: 75596972--75597068 Score: 178
Period size: 47 Copynumber: 2.1 Consensus size: 47
75596962 AGGAAGTGCA
75596972 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
75597019 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
75597066 AAA
1 AAA
75597069 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
47 39 0.80
48 10 0.20
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:75609866 original size:76 final size:76
Alignment explanation
Indices: 75609740--75609894 Score: 283
Period size: 76 Copynumber: 2.0 Consensus size: 76
75609730 TATAAACACA
*
75609740 TATACTTAAGTTCTTTTTTATATCACATTCAATCATATTCATTTTGCAACATTACAATTTAATTC
1 TATACTTAAGTTCTCTTTTATATCACATTCAATCATATTCATTTTGCAACATTACAATTTAATTC
75609805 ATTCAATCTTC
66 ATTCAATCTTC
* *
75609816 TATACTTAAGTTCTCTTTTATATCACATTCAATCATGTTCGTTTTGCAACATTACAATTTAATTC
1 TATACTTAAGTTCTCTTTTATATCACATTCAATCATATTCATTTTGCAACATTACAATTTAATTC
75609881 ATTCAATCTTC
66 ATTCAATCTTC
75609892 TAT
1 TAT
75609895 TCACACTCAA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.30, C:0.19, G:0.04, T:0.47
Consensus pattern (76 bp):
TATACTTAAGTTCTCTTTTATATCACATTCAATCATATTCATTTTGCAACATTACAATTTAATTC
ATTCAATCTTC
Found at i:75624693 original size:6 final size:6
Alignment explanation
Indices: 75624663--75624781 Score: 75
Period size: 6 Copynumber: 19.3 Consensus size: 6
75624653 AAGAAACATT
* * *
75624663 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
75624712 ATCAGA ATCAGA ATTAG- GTGACAGA ATTAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
75624763 A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
75624782 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
5 5 0.06
6 69 0.80
7 9 0.10
8 3 0.03
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:75624717 original size:25 final size:25
Alignment explanation
Indices: 75624684--75624753 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
75624674 AATCAAAATG
75624684 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
75624709 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
75624734 AGAATTAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
75624754 TATCAGGTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.46, C:0.13, G:0.23, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:75624721 original size:31 final size:30
Alignment explanation
Indices: 75624684--75624781 Score: 116
Period size: 31 Copynumber: 3.4 Consensus size: 30
75624674 AATCAAAATG
75624684 AGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAG-ATCAGGTGACAGAATC
*
75624715 AGAATCAGAAT----T-AGGTGACAGAATT
1 AGAATCAGAATCAGATCAGGTGACAGAATC
*
75624740 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAG-ATCAGGTGACAGAATC
*
75624771 AAAATCAGAAT
1 AGAATCAGAAT
75624782 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
25 23 0.40
26 1 0.02
30 1 0.02
31 32 0.56
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.19
Consensus pattern (30 bp):
AGAATCAGAATCAGATCAGGTGACAGAATC
Found at i:75624768 original size:25 final size:25
Alignment explanation
Indices: 75624684--75624778 Score: 104
Period size: 25 Copynumber: 3.8 Consensus size: 25
75624674 AATCAAAATG
*
75624684 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
75624709 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGGTAAC
* *
75624734 AGAATTAGAATCAGAATCA-GTATC
1 AGAATCAGAATCAGAATCAGGTAAC
*
75624758 AGGTAA-CAGAATCAAAATCAG
1 A-G-AATCAGAATCAGAATCAG
75624779 AATGTGAATG
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
24 4 0.07
25 54 0.90
26 2 0.03
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTAAC
Found at i:75625314 original size:27 final size:27
Alignment explanation
Indices: 75625284--75625612 Score: 419
Period size: 27 Copynumber: 12.2 Consensus size: 27
75625274 AACACCCTAG
* *
75625284 GGGTAAAATGGTAATTTTATAAAAT-GA
1 GGGTAAAATAGTAATTCTAT-AAATCGA
*
75625311 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
*
75625338 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* *
75625365 GGGTAAAATAGTAATTTTATAAATTGA
1 GGGTAAAATAGTAATTCTATAAATCGA
75625392 GGGTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
** * *
75625419 GGGTAAAACGGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* * *
75625446 GGGTAAAA-CGATAATTTTGTAAATCGA
1 GGGTAAAATAG-TAATTCTATAAATCGA
*
75625473 GGGTAAAATAGGAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* * * *
75625500 GGGTAAAATGGTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* *
75625527 AGGTAAAAAAGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
*
75625554 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
* *
75625581 GGGTAAAATGGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGA
75625608 GGGTA
1 GGGTA
75625613 CTTTGGTAAT
Statistics
Matches: 265, Mismatches: 34, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 5 0.02
27 259 0.98
28 1 0.00
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAATAGTAATTCTATAAATCGA
Found at i:75625650 original size:81 final size:81
Alignment explanation
Indices: 75625284--75625612 Score: 491
Period size: 81 Copynumber: 4.1 Consensus size: 81
75625274 AACACCCTAG
* * *
75625284 GGGTAAAATGGTAATTTTATAAAAT-GAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATA
1 GGGTAAAATAGTAATTTTAT-AAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATG
75625348 GTAATTCTGTAAATCGA
65 GTAATTCTGTAAATCGA
* *
75625365 GGGTAAAATAGTAATTTTATAAATTGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGG
*
75625430 TAATTTTGTAAATCGA
66 TAATTCTGTAAATCGA
* * *
75625446 GGGTAAAA-CGATAATTTTGTAAATCGAGGGTAAAATAGGAATTCTATAAATCGAGGGTAAAATG
1 GGGTAAAATAG-TAATTTTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATG
* *
75625510 GTAATTTTGTAAATTGA
65 GTAATTCTGTAAATCGA
* * * *
75625527 AGGTAAAAAAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAATGG
1 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGG
75625592 TAATTCTGTAAATCGA
66 TAATTCTGTAAATCGA
75625608 GGGTA
1 GGGTA
75625613 CTTTGGTAAT
Statistics
Matches: 225, Mismatches: 20, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
80 5 0.02
81 219 0.97
82 1 0.00
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.30
Consensus pattern (81 bp):
GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGG
TAATTCTGTAAATCGA
Found at i:75625692 original size:27 final size:26
Alignment explanation
Indices: 75625608--75625704 Score: 104
Period size: 27 Copynumber: 3.6 Consensus size: 26
75625598 TGTAAATCGA
* *
75625608 GGGTACTTTGGTAATTTTACAAGTCAA
1 GGGTATTTTGGTAATTTTACAAGT-AG
** * *
75625635 GGGTATTTCAGTAATTTTACAGGTCG
1 GGGTATTTTGGTAATTTTACAAGTAG
*
75625661 AGGGTATTTTGGTAATTTTACAAACTAG
1 -GGGTATTTTGGTAATTTTAC-AAGTAG
75625689 GGGTATTTTGGTAATT
1 GGGTATTTTGGTAATT
75625705 CTATCCTACA
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
27 54 0.95
28 3 0.05
ACGTcount: A:0.27, C:0.08, G:0.25, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAGTAG
Found at i:75625723 original size:27 final size:27
Alignment explanation
Indices: 75625693--75625768 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
75625683 AACTAGGGGT
* * *
75625693 ATTTTGGTAATTCTATCCTACATGGGC
1 ATTTTAGTAATTCTACCCTACAAGGGC
*
75625720 ATTTTAGTAATTCTACCCTACAAGGGT
1 ATTTTAGTAATTCTACCCTACAAGGGC
* * *
75625747 ATTTCAGTAATGCTAGCCTACA
1 ATTTTAGTAATTCTACCCTACA
75625769 GATATGAGAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.37
Consensus pattern (27 bp):
ATTTTAGTAATTCTACCCTACAAGGGC
Found at i:75627669 original size:25 final size:25
Alignment explanation
Indices: 75627639--75627705 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
75627629 AACCAAAATG
*
75627639 AGAATCAAAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGGTAAC
* *
75627664 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGGTAAC
75627689 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
75627706 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (25 bp):
AGAATCAAAATCAGAATCAGGTAAC
Found at i:75627928 original size:71 final size:67
Alignment explanation
Indices: 75627851--75627992 Score: 176
Period size: 67 Copynumber: 2.1 Consensus size: 67
75627841 TCACTAGATA
* * *
75627851 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACCAGATTGCAGCGA
*
75627916 AGCTTC
62 AGCTGC
* * * *
75627922 CAGATATTGTGACGAAGTCATCAGAACAGATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAAGCT
75627987 GC
66 GC
75627989 CAGA
1 CAGA
75627993 ACGCTTCCTC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
67 39 0.62
71 24 0.38
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGATTGCAGCGAAGCT
GC
Found at i:75628240 original size:27 final size:27
Alignment explanation
Indices: 75628210--75628565 Score: 370
Period size: 27 Copynumber: 13.2 Consensus size: 27
75628200 AACACCCTAG
75628210 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
* * * *
75628237 GGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
* *
75628264 GGGTAAAATAGTAATTTTTTAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
* *
75628291 GGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
*
75628318 GGGTAAAATAGTAATTTTATAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
*
75628345 GGGTAAAATGGTAATTTTTTAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
* * *
75628372 GGGTAAAATAGTAATTCTATAAATAGA
1 GGGTAAAATGGTAATTTTATAAATCGA
* **
75628399 GGGTAAAATGGTAATTTTGTAAATTAA
1 GGGTAAAATGGTAATTTTATAAATCGA
* * *
75628426 GGCTAAAATAGTAATTCTATAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
* * * *
75628453 GGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAATGGTAATTTTATAAATCGA
* * * *
75628480 GGGGAAAACGGTAATTCTGTAAATCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
*** * *
75628507 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
*** * * *
75628534 GGGTATTTTAGTAGTTTTATAAGTCGA
1 GGGTAAAATGGTAATTTTATAAATCGA
75628561 GGGTA
1 GGGTA
75628566 TTTCAATAAT
Statistics
Matches: 281, Mismatches: 48, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 281 1.00
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (27 bp):
GGGTAAAATGGTAATTTTATAAATCGA
Found at i:75628520 original size:54 final size:54
Alignment explanation
Indices: 75628210--75628565 Score: 415
Period size: 54 Copynumber: 6.6 Consensus size: 54
75628200 AACACCCTAG
* * * * *
75628210 GGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACGATAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA
* * *
75628264 GGGTAAAATAGTAATTTTTTAAATCGAGGGTAAAATAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA
* *
75628318 GGGTAAAATAGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTTTAAATCGA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA
* **
75628372 GGGTAAAATAGTAATTCTATAAATAGAGGGTAAAATGGTAATTTTGTAAATTAA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA
* * * *
75628426 GGCTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA
* ** * *** ** *
75628480 GGGGAAAACGGTAATTCTGTAAATCGAGGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA
*** * * *
75628534 GGGTATTTTAGTAGTTTTATAAGTCGAGGGTA
1 GGGTAAAATAGTAATTCTATAAATCGAGGGTA
75628566 TTTCAATAAT
Statistics
Matches: 259, Mismatches: 43, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 259 1.00
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (54 bp):
GGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGA
Found at i:75628566 original size:27 final size:27
Alignment explanation
Indices: 75628503--75628657 Score: 125
Period size: 27 Copynumber: 5.7 Consensus size: 27
75628493 ATTCTGTAAA
* *
75628503 TCGAGGGTACTTTGGTAATTTTACAAG
1 TCGAGGGTATTTTAGTAATTTTACAAG
* *
75628530 TCGAGGGTATTTTAGTAGTTTTATAAG
1 TCGAGGGTATTTTAGTAATTTTACAAG
* * * *
75628557 TCGAGGGTATTTCAATAATTTCACAAA
1 TCGAGGGTATTTTAGTAATTTTACAAG
*
75628584 TC-AGAGGTATTTTGGTAATTTTACAA-
1 TCGAG-GGTATTTTAGTAATTTTACAAG
* * * * *
75628610 ACTAGGGGTATTTTGGTAATTTTATAAA
1 TCGA-GGGTATTTTAGTAATTTTACAAG
* * *
75628638 CCAAGGGTATTTTGGTAATT
1 TCGAGGGTATTTTAGTAATT
75628658 CTACCCTACA
Statistics
Matches: 106, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.03
27 100 0.94
28 3 0.03
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
TCGAGGGTATTTTAGTAATTTTACAAG
Found at i:75628657 original size:81 final size:81
Alignment explanation
Indices: 75628500--75628649 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
75628490 GTAATTCTGT
* * * ** *
75628500 AAATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTTAGTAGTTTTATAAGTCGAGGGT
1 AAATCGAGGGTACTTTGGTAATTTTACAACTAGAGGGTATTTTAGTAATTTTATAAACCAAGGGT
75628565 ATTTCAATAATTTCAC
66 ATTTCAATAATTTCAC
* *
75628581 AAATC-AGAGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTATAAACCAAGG
1 AAATCGAG-GGTACTTTGGTAATTTTAC-AACTAGAGGGTATTTTAGTAATTTTATAAACCAAGG
75628644 GTATTT
64 GTATTT
75628650 TGGTAATTCT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
80 2 0.03
81 53 0.90
82 4 0.07
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
AAATCGAGGGTACTTTGGTAATTTTACAACTAGAGGGTATTTTAGTAATTTTATAAACCAAGGGT
ATTTCAATAATTTCAC
Found at i:75628707 original size:27 final size:27
Alignment explanation
Indices: 75628652--75628721 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
75628642 GGGTATTTTG
* *
75628652 GTAATTCTACCCTACAGGGGCATTTCA
1 GTAATTCTACCCTACAAGGGCATTCCA
*
75628679 GTAATTCTACCCTACAAGGGTATTCCA
1 GTAATTCTACCCTACAAGGGCATTCCA
* *
75628706 GTAATGCTAGCCTACA
1 GTAATTCTACCCTACA
75628722 GATATCAGAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGCATTCCA
Found at i:75629995 original size:44 final size:43
Alignment explanation
Indices: 75629865--75630025 Score: 168
Period size: 42 Copynumber: 3.8 Consensus size: 43
75629855 TAATGCCAAC
* * * *
75629865 GTCCCAGACGTGGTCTTACATGT-AATTCAGATCAATGCCTCT
1 GTCCCAGACATGGTCTTACACGTAAATTCAGATCGATGCCTAT
* * * * *
75629907 TTCCCAAACAGGGTCTTATACG-AAATT-AGATACGATGCCGAT
1 GTCCCAGACATGGTCTTACACGTAAATTCAGAT-CGATGCCTAT
*
75629949 GTCCCAGACATGGTCTTACACGTAAATTTCAAATCGATGCCTAT
1 GTCCCAGACATGGTCTTACACGTAAA-TTCAGATCGATGCCTAT
*
75629993 GTCCCAGACACGGTCTTACACG-ATAATTCAGAT
1 GTCCCAGACATGGTCTTACACGTA-AATTCAGAT
75630026 TAATACCAAC
Statistics
Matches: 96, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
41 4 0.04
42 45 0.47
43 10 0.10
44 34 0.35
45 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGTAAATTCAGATCGATGCCTAT
Found at i:75632707 original size:30 final size:30
Alignment explanation
Indices: 75632671--75632732 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
75632661 TAAGTAGCCG
75632671 AAGCTAGTTTAAATC-TCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGT-ACACTTAGTGCCA
75632701 AAGCTAGTTTAAATCGTACACTTAGTGCCA
1 AAGCTAGTTTAAATCGTACACTTAGTGCCA
75632731 AA
1 AA
75632733 ACTTCCGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 30 0.97
31 1 0.03
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGTACACTTAGTGCCA
Found at i:75642131 original size:40 final size:40
Alignment explanation
Indices: 75642085--75642171 Score: 129
Period size: 40 Copynumber: 2.2 Consensus size: 40
75642075 TGCGTTTGCA
* * *
75642085 TAAAAAATGCCGCTATGGATCGAGCATTAGCGGTGCTTTT
1 TAAAAAATACCGCTATAGATCGAGCATTAGCGATGCTTTT
* *
75642125 TGAAAAATACCGCTATAGATCGAGCATTAGCTATGCTTTT
1 TAAAAAATACCGCTATAGATCGAGCATTAGCGATGCTTTT
75642165 TAAAAAA
1 TAAAAAA
75642172 CGCCACAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (40 bp):
TAAAAAATACCGCTATAGATCGAGCATTAGCGATGCTTTT
Found at i:75642278 original size:40 final size:40
Alignment explanation
Indices: 75642223--75642332 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
75642213 AGCTTTAGTG
* * * *
75642223 GCATTAGTGGCGCTTTTTGAAAAACGTCGCTATAGATCTA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCACTATAGATCGA
* *
75642263 GCATTAGCGGTGCTTTTTGAAAAACGCCACTATAGGTCGA
1 GCATTAGCGGCGCTTTTTGAAAAACGCCACTATAGATCGA
* *
75642303 CCATTAGCGGCGTTTTTTGAAAAACGCCAC
1 GCATTAGCGGCGCTTTTTGAAAAACGCCAC
75642333 AAAAAAACAT
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACGCCACTATAGATCGA
Found at i:75642834 original size:7 final size:7
Alignment explanation
Indices: 75642789--75642849 Score: 50
Period size: 7 Copynumber: 8.6 Consensus size: 7
75642779 GGGTTAATAG
*
75642789 TTAGGGG
1 TTAGGGT
75642796 TTAGGAGT
1 TTAGG-GT
*
75642804 TTAGAGT
1 TTAGGGT
* *
75642811 TTATGTT
1 TTAGGGT
* *
75642818 TTATGAT
1 TTAGGGT
75642825 TTAGGGT
1 TTAGGGT
75642832 TTAGGGT
1 TTAGGGT
*
75642839 TTAAGGT
1 TTAGGGT
75642846 TTAG
1 TTAG
75642850 ATTAATCAGT
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
7 38 0.88
8 5 0.12
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (7 bp):
TTAGGGT
Found at i:75642841 original size:21 final size:22
Alignment explanation
Indices: 75642767--75642850 Score: 59
Period size: 21 Copynumber: 4.0 Consensus size: 22
75642757 TGGGGTGAAG
* * *
75642767 GTTTAGGG-TTAGGGGTTAATA
1 GTTTAGGGTTTAGGAGTTTAGA
*
75642788 G-TTAGGGGTTAGGAGTTTAGA
1 GTTTAGGGTTTAGGAGTTTAGA
* * * *
75642809 GTTTATGTTTTATGA-TTTAGG
1 GTTTAGGGTTTAGGAGTTTAGA
*
75642830 GTTTAGGGTTTAAG-GTTTAGA
1 GTTTAGGGTTTAGGAGTTTAGA
75642851 TTAATCAGTG
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
20 6 0.12
21 33 0.69
22 9 0.19
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.43
Consensus pattern (22 bp):
GTTTAGGGTTTAGGAGTTTAGA
Found at i:75645332 original size:59 final size:58
Alignment explanation
Indices: 75645269--75645390 Score: 147
Period size: 58 Copynumber: 2.1 Consensus size: 58
75645259 TCTAATAATT
* * *
75645269 GTTTGGTTTT-TATGCGAAATGGAGATCCTAAAAGATACCCTTTGGGGTTATGTTTTTTA
1 GTTTGGTTTTGGATGC--AATGGAAAACCTAAAAGATACCCTTTGGGGTTATGTTTTTTA
* ** * *
75645328 GTTTGGTTTTGGATTCTCTTGAAAAGCTAAAAGATACCCTTTGGGGTTATGTTTTTTA
1 GTTTGGTTTTGGATGCAATGGAAAACCTAAAAGATACCCTTTGGGGTTATGTTTTTTA
75645386 GTTTG
1 GTTTG
75645391 CTATTGGGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
58 41 0.76
59 10 0.19
60 3 0.06
ACGTcount: A:0.22, C:0.10, G:0.24, T:0.44
Consensus pattern (58 bp):
GTTTGGTTTTGGATGCAATGGAAAACCTAAAAGATACCCTTTGGGGTTATGTTTTTTA
Found at i:75646561 original size:160 final size:159
Alignment explanation
Indices: 75646281--75646584 Score: 441
Period size: 160 Copynumber: 1.9 Consensus size: 159
75646271 GGGGAATGCA
* * *
75646281 AATTGAAGTCTATAAATTTTGTTAATTGAGATGTTAAAGTGCAGCAAATTGAAGTGTTTAAATGT
1 AATTGAAGTCTATAAATGTTGTTAATTGAGATGTTAAAATGCAGCAAATTGAAGTGTTTAAATGC
* * * *
75646346 TGCAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
66 TGCAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTGTTAAAGTA-TGCAAATTGAAGTGTTTAA
*
75646411 TTGCTGGAAATTGAGATGTTTTATCGCTGT
130 ATGCTGGAAATTGAGATGTTTTATCGCTGT
* * *
75646441 AATTGAGGTGTATAAATGTTGTTAATTGATATGTTAAAATGCAGCAAATTGAAGTGTTTAAAGTG
1 AATTGAAGTCTATAAATGTTGTTAATTGAGATGTTAAAATGCAGCAAATTGAAGTGTTTAAA-TG
*
75646506 CTGCAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGTTAAATGT-TGTAAATTGAAGTGTTT
65 CTGCAAATTGAAGTGCTTAAA-TGCTGCAAATTGAAGTGTTAAA-GTATGCAAATTGAAGTGTTT
*
75646569 AAATGCTGTAAATTGA
128 AAATGCTGGAAATTGA
75646585 AGTGCTTAAA
Statistics
Matches: 128, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
160 91 0.71
161 35 0.27
162 2 0.02
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.38
Consensus pattern (159 bp):
AATTGAAGTCTATAAATGTTGTTAATTGAGATGTTAAAATGCAGCAAATTGAAGTGTTTAAATGC
TGCAAATTGAAGTGCTTAAATGCTGCAAATTGAAGTGTTAAAGTATGCAAATTGAAGTGTTTAAA
TGCTGGAAATTGAGATGTTTTATCGCTGT
Found at i:75646686 original size:91 final size:90
Alignment explanation
Indices: 75646487--75646926 Score: 346
Period size: 91 Copynumber: 4.8 Consensus size: 90
75646477 AAATGCAGCA
* * * * * * * *
75646487 AATTGAAGTGTTTAAAGTGCTGCAAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTAAATGT
1 AATTGAGGTGTATAAA-TGTTGTAAATTGAAATGTTAAAGTACTACAAATTGAAGTGTT-TA-GT
*
75646552 TG-T-AAATTGA-A-GTGTTTA-AATGCTGT
63 TGCTGAAATTGAGATGT-TTTATCAT--TGT
* * *
75646578 AAATTGAAGTGCT-TAAATGTTGTAAATTGAAATGTTTAAGTACTGCAAATTGAAGTGTTTAGTT
1 -AATTGAGGTG-TATAAATGTTGTAAATTGAAATGTTAAAGTACTACAAATTGAAGTGTTTAGTT
75646642 GCTAGAAATTGAGATGTTTTATCATTGT
64 GCT-GAAATTGAGATGTTTTATCATTGT
** * * * * * *
75646670 AATTGAGGTGTATAAATAATGTTAATTGAGATGTAAAAGTGCTACAAATTTAAGTGTTAAATGTT
1 AATTGAGGTGTATAAATGTTGTAAATTGAAATGTTAAAGTACTACAAATTGAAGTGTT-TA-GTT
*
75646735 G-T-AAATTGA-A-GTGTTTA-AATGCTGT
64 GCTGAAATTGAGATGT-TTTATCAT--TGT
* * * *
75646760 AAATTGAAGTGTTTAAATGTTGTAAATTGAAGTGTTTAAGTACTACAAATTGAAGTGTTTAGTTG
1 -AATTGAGGTGTATAAATGTTGTAAATTGAAATGTTAAAGTACTACAAATTGAAGTGTTTAGTTG
75646825 CTGGAAATTGAGATGTTTTATCGA-TGT
65 CT-GAAATTGAGATGTTTTATC-ATTGT
* * * * * **
75646852 AATTGAGGAGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGC
1 AATTGAGGTGTATAAATGTTGTAAATTGAAATGTTAAAGTACTACAAATTGAAGTGTTTAGTTGC
75646917 TGTAAATTGA
66 TG-AAATTGA
75646927 AGTGTTAAAG
Statistics
Matches: 283, Mismatches: 43, Indels: 45
0.76 0.12 0.12
Matches are distributed among these distances:
88 4 0.01
89 13 0.05
90 16 0.06
91 192 0.68
92 36 0.13
93 15 0.05
94 6 0.02
95 1 0.00
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.38
Consensus pattern (90 bp):
AATTGAGGTGTATAAATGTTGTAAATTGAAATGTTAAAGTACTACAAATTGAAGTGTTTAGTTGC
TGAAATTGAGATGTTTTATCATTGT
Found at i:75646727 original size:229 final size:228
Alignment explanation
Indices: 75646326--75646816 Score: 765
Period size: 229 Copynumber: 2.1 Consensus size: 228
75646316 AAAGTGCAGC
* *
75646326 AAATTGAAGTGTTTAAATGTTGCAAATTGAAGTGCTTAAATGTTGTAAATTGAAGTGTTTAAGTA
1 AAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAAATGTTGTAAATTGAAATGTTTAAGTA
* *
75646391 CTGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAA
66 CTGCAAATTGAAGTGTTTAGTTGCTAGAAATTGAGATGTTTTATCACTGTAATTGAGGTGTATAA
** *
75646456 ATGTTGTTAATTGATATGTTAAAATGCAGCAAATTGAAGTGTTTAAAGTGCTGCAAATTGAAGTG
131 ATAATGTTAATTGAGATGTTAAAATGCAGCAAATTGAAGTG-TTAAA-TGCTGCAAATTGAAGTG
75646521 -TTAAAGTGCTGCAAATTGAAGTG-TTAAATGTTGT
194 TTTAAA-TGCTGCAAATTGAAGTGTTTAAATGTTGT
*
75646555 AAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGTAAATTGAAATGTTTAAGTA
1 AAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAAATGTTGTAAATTGAAATGTTTAAGTA
*
75646620 CTGCAAATTGAAGTGTTTAGTTGCTAGAAATTGAGATGTTTTATCATTGTAATTGAGGTGTATAA
66 CTGCAAATTGAAGTGTTTAGTTGCTAGAAATTGAGATGTTTTATCACTGTAATTGAGGTGTATAA
* * *
75646685 ATAATGTTAATTGAGATG-TAAAAGTGCTA-CAAATTTAAGTGTTAAATGTTGTAAATTGAAGTG
131 ATAATGTTAATTGAGATGTTAAAA-TGC-AGCAAATTGAAGTGTTAAATGCTGCAAATTGAAGTG
*
75646748 TTTAAATGCTGTAAATTGAAGTGTTTAAATGTTGT
194 TTTAAATGCTGCAAATTGAAGTGTTTAAATGTTGT
* * *
75646783 AAATTGAAGTGTTTAAGTACTACAAATTGAAGTG
1 AAATTGAAGTGTTTAAATGCTGCAAATTGAAGTG
75646817 TTTAGTTGCT
Statistics
Matches: 241, Mismatches: 17, Indels: 9
0.90 0.06 0.03
Matches are distributed among these distances:
227 31 0.13
228 56 0.23
229 153 0.63
230 1 0.00
ACGTcount: A:0.35, C:0.05, G:0.22, T:0.38
Consensus pattern (228 bp):
AAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGCTTAAATGTTGTAAATTGAAATGTTTAAGTA
CTGCAAATTGAAGTGTTTAGTTGCTAGAAATTGAGATGTTTTATCACTGTAATTGAGGTGTATAA
ATAATGTTAATTGAGATGTTAAAATGCAGCAAATTGAAGTGTTAAATGCTGCAAATTGAAGTGTT
TAAATGCTGCAAATTGAAGTGTTTAAATGTTGT
Found at i:75646753 original size:182 final size:182
Alignment explanation
Indices: 75646523--75646952 Score: 702
Period size: 182 Copynumber: 2.4 Consensus size: 182
75646513 TTGAAGTGTT
75646523 AAAGTGCTGCAAATTGAAGTGTTAAATGTTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGT
1 AAAGTGCTGCAAATTGAAGTGTTAAATGTTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGT
*
75646588 GCTTAAATGTTGTAAATTGAAATGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTAGAAATTG
66 GCTTAAATGTTGTAAATTGAAATGTTTAAGTACTACAAATTGAAGTGTTTAGTTGCTAGAAATTG
*
75646653 AGATGTTTTATC-ATTGTAATTGAGGTGTATAAATAATGTTAATTGAGATGTA
131 AGATGTTTTATCGA-TGTAATTGAGGAGTATAAATAATGTTAATTGAGATGTA
* *
75646705 AAAGTGCTACAAATTTAAGTGTTAAATGTTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGT
1 AAAGTGCTGCAAATTGAAGTGTTAAATGTTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGT
* * *
75646770 GTTTAAATGTTGTAAATTGAAGTGTTTAAGTACTACAAATTGAAGTGTTTAGTTGCTGGAAATTG
66 GCTTAAATGTTGTAAATTGAAATGTTTAAGTACTACAAATTGAAGTGTTTAGTTGCTAGAAATTG
** *
75646835 AGATGTTTTATCGATGTAATTGAGGAGTATAAATGTTGTTAATTGAGATGTT
131 AGATGTTTTATCGATGTAATTGAGGAGTATAAATAATGTTAATTGAGATGTA
* * *
75646887 AAAGTGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTG-TTAAAGTGTTGCAAATTGAA
1 AAAGTGCTGCAAATTGAAGTG-TTAAATGTTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAA
75646951 GT
64 GT
75646953 TTTTAAGTAC
Statistics
Matches: 230, Mismatches: 15, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
182 194 0.84
183 36 0.16
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (182 bp):
AAAGTGCTGCAAATTGAAGTGTTAAATGTTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGT
GCTTAAATGTTGTAAATTGAAATGTTTAAGTACTACAAATTGAAGTGTTTAGTTGCTAGAAATTG
AGATGTTTTATCGATGTAATTGAGGAGTATAAATAATGTTAATTGAGATGTA
Found at i:75646765 original size:68 final size:69
Alignment explanation
Indices: 75646326--75646958 Score: 371
Period size: 68 Copynumber: 9.2 Consensus size: 69
75646316 AAAGTGCAGC
* * * * ** *
75646326 AAATTGAAGTGTTTAAATGTTGCAAATTGAAGTGCTTAAA-TGTTGTAAATTGAAGTGTTTAA-G
1 AAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAAGTGCTACAAATTGAAGTGTTAAATG
*
75646389 TACTGC
66 T--TGT
** * * ** *
75646395 AAATTGAAGTGTTTAGTTGCTGGAAATTG-AGATGTTT-TA-TCGCT-GTAATTGAGGTGTATAA
1 AAATTGAAGTGTTTAAATGCTGTAAATTGAAG-TGTTTAAAGT-GCTACAAATTGAAGTGT-TAA
75646456 ATGTTGT
63 ATGTTGT
* * * * *
75646463 TAATTGATA-TGTTAAAATGCAGCAAATTGAAGTGTTTAAAGTGCTGCAAATTGAAGTGTTAAAG
1 AAATTGA-AGTGTTTAAATGCTGTAAATTGAAGTGTTTAAAGTGCTACAAATTGAAGTGTTAAA-
* *
75646527 TGCTGC
64 TGTTGT
* **
75646533 AAATTGAAGTG-TTAAATGTTGTAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGCTTAAAT
1 AAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAAGTGCTACAAATTGAAGTG-TTAAAT
75646596 GTTGT
65 GTTGT
* * * * * **
75646601 AAATTGAAATGTTTAAGTACTGCAAATTGAAGTGTTT--AGTTGCTAGAAATTG-AGATGTTTTA
1 AAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAAG-TGCTACAAATTGAAG-TGTTAAA
*
75646663 TCATTGT
64 T-GTTGT
* * ** * * *
75646670 -AATTGAGGTGTATAAATAATGTTAATTG-AGATG-TAAAAGTGCTACAAATTTAAGTGTTAAAT
1 AAATTGAAGTGTTTAAATGCTGTAAATTGAAG-TGTTTAAAGTGCTACAAATTGAAGTGTTAAAT
75646732 GTTGT
65 GTTGT
* ** *
75646737 AAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAA-TGTTGTAAATTGAAGTGTTTAA-G
1 AAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAAGTGCTACAAATTGAAGTGTTAAATG
**
75646800 TACTAC
66 T--TGT
** * ** * *
75646806 AAATTGAAGTGTTTAGTTGCTGGAAATTG-AGATGTTTTATCGATG-T---AATTGAGGAGTATA
1 AAATTGAAGTGTTTAAATGCTGTAAATTGAAG-TG-TTTAAAG-TGCTACAAATTGAAGTGT-TA
75646866 AATGTTGT
62 AATGTTGT
* * **
75646874 TAATTG-AGATG-TTAAAGTGCTGCAAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGTTAAA
1 AAATTGAAG-TGTTTAAA-TGCTGTAAATTGAAGTGTTTAAAGTGCTACAAATTGAAGTGTTAAA
*
75646936 GTGTTGC
64 -TGTTGT
*
75646943 AAATTGAAGTTTTTAA
1 AAATTGAAGTGTTTAA
75646959 GTACTGCAAA
Statistics
Matches: 433, Mismatches: 89, Indels: 83
0.72 0.15 0.14
Matches are distributed among these distances:
65 2 0.00
66 1 0.00
67 19 0.04
68 195 0.45
69 176 0.41
70 37 0.09
71 1 0.00
72 2 0.00
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (69 bp):
AAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAAGTGCTACAAATTGAAGTGTTAAATG
TTGT
Found at i:75646958 original size:46 final size:46
Alignment explanation
Indices: 75646326--75646958 Score: 494
Period size: 46 Copynumber: 13.8 Consensus size: 46
75646316 AAAGTGCAGC
* *
75646326 AAATTGAAGTGTTTAAA-TGTTGCAAATTGAAGTGCTTAAATGTTGT
1 AAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGT
* * ** * *
75646372 AAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGG
1 AAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGT
** * * *
75646418 AAATTG-AGATGTTTTA-TCGCTG-TAATTGAGGTGTATAAATGTTGT
1 AAATTGAAG-TGTTAAAGT-GCTGCAAATTGAAGTGTTTAAATGTTGT
* * * * *
75646463 TAATTGATA-TGTTAAAATGCAGCAAATTGAAGTGTTTAAAGTGCTGC
1 AAATTGA-AGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAA-TGTTGT
75646510 AAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTG-TTAAATGTTGT
1 AAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGT
* *
75646555 AAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGCTTAAATGTTGT
1 AAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGT
* * * ** *
75646601 AAATTGAAATGTTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTAG-
1 AAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATG-TTGT
** * * * **
75646647 AAATTG-AGATGTTTTA-T-CATTG-TAATTGAGGTGTATAAATAATGT
1 AAATTGAAG-TGTTAAAGTGC--TGCAAATTGAAGTGTTTAAATGTTGT
* * * *
75646692 TAATTG-AGATGTAAAAGTGCTACAAATTTAAGTG-TTAAATGTTGT
1 AAATTGAAG-TGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGT
*
75646737 AAATTGAAGTGTTTAAA-TGCTGTAAATTGAAGTGTTTAAATGTTGT
1 AAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGT
* * * ** * *
75646783 AAATTGAAGTGTTTAAGTACTACAAATTGAAGTGTTTAGTTGCTGG
1 AAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGT
** * * * * *
75646829 AAATTG-AGATGTTTTA-TCGATG-TAATTGAGGAGTATAAATGTTGT
1 AAATTGAAG-TGTTAAAGT-GCTGCAAATTGAAGTGTTTAAATGTTGT
* *
75646874 TAATTG-AGATGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGCTGT
1 AAATTGAAG-TGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGT
* *
75646920 AAATTGAAGTGTTAAAGTGTTGCAAATTGAAGTTTTTAA
1 AAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAA
75646959 GTACTGCAAA
Statistics
Matches: 460, Mismatches: 98, Indels: 58
0.75 0.16 0.09
Matches are distributed among these distances:
44 2 0.00
45 166 0.36
46 253 0.55
47 39 0.08
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (46 bp):
AAATTGAAGTGTTAAAGTGCTGCAAATTGAAGTGTTTAAATGTTGT
Found at i:75646960 original size:23 final size:23
Alignment explanation
Indices: 75646304--75646992 Score: 387
Period size: 23 Copynumber: 30.2 Consensus size: 23
75646294 AAATTTTGTT
* *
75646304 AATTG-AGATGTTAAAGTGCAGCA
1 AATTGAAG-TGTTTAAGTGCTGCA
* *
75646327 AATTGAAGTGTTTAAATGTTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
* * * *
75646350 AATTGAAGTGCTTAAATGTTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
*
75646373 AATTGAAGTGTTTAAGTACTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
*
75646396 AATTGAAGTGTTT-AGTTGCTGGA
1 AATTGAAGTGTTTAAG-TGCTGCA
* *
75646419 AATTG-AGATGTTTTA-TCGCTG-T
1 AATTGAAG-TGTTTAAGT-GCTGCA
* * * * **
75646441 AATTGAGGTGTATAAATGTTGTT
1 AATTGAAGTGTTTAAGTGCTGCA
* * *
75646464 AATTGATA-TGTTAAAATGCAGCA
1 AATTGA-AGTGTTTAAGTGCTGCA
75646487 AATTGAAGTGTTTAAAGTGCTGCA
1 AATTGAAGTGTTT-AAGTGCTGCA
*
75646511 AATTGAAGTGTTAAAGTGCTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
* * *
75646534 AATTGAAGTG-TTAAATGTTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
75646556 AATTGAAGTGTTTAAATGCTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
* * * *
75646579 AATTGAAGTGCTTAAATGTTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
75646602 AATTGAAATGTTTAAGTACTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
75646625 AATTGAAGTGTTT-AGTTGCTAG-A
1 AATTGAAGTGTTTAAG-TGCT-GCA
* *
75646648 AATTG-AGATGTTTTA-T-CATTG-T
1 AATTGAAG-TGTTTAAGTGC--TGCA
* * * ** **
75646670 AATTGAGGTGTATAAATAATGTT
1 AATTGAAGTGTTTAAGTGCTGCA
** *
75646693 AATTG-AGATGTAAAAGTGCTACA
1 AATTGAAG-TGTTTAAGTGCTGCA
* * * *
75646716 AATTTAAGTG-TTAAATGTTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
75646738 AATTGAAGTGTTTAAATGCTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
* * *
75646761 AATTGAAGTGTTTAAATGTTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
75646784 AATTGAAGTGTTTAAGTACTACA
1 AATTGAAGTGTTTAAGTGCTGCA
*
75646807 AATTGAAGTGTTT-AGTTGCTGGA
1 AATTGAAGTGTTTAAG-TGCTGCA
* * *
75646830 AATTG-AGATGTTTTA-TCGATG-T
1 AATTGAAG-TGTTTAAGT-GCTGCA
* * * * * **
75646852 AATTGAGGAGTATAAATGTTGTT
1 AATTGAAGTGTTTAAGTGCTGCA
*
75646875 AATTG-AGATGTTAAAGTGCTGCA
1 AATTGAAG-TGTTTAAGTGCTGCA
* *
75646898 AATTGAAGTGTTTAAATGCTGTA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
75646921 AATTGAAGTGTTAAAGTGTTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
75646944 AATTGAAGTTTTTAAGTACTGCA
1 AATTGAAGTGTTTAAGTGCTGCA
* *
75646967 AACTGAATTGTTT-AGTTGCTG-A
1 AATTGAAGTGTTTAAG-TGCTGCA
75646989 AATT
1 AATT
75646993 TAGTATATGT
Statistics
Matches: 525, Mismatches: 106, Indels: 71
0.75 0.15 0.10
Matches are distributed among these distances:
21 1 0.00
22 95 0.18
23 399 0.76
24 30 0.06
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (23 bp):
AATTGAAGTGTTTAAGTGCTGCA
Found at i:75647786 original size:42 final size:42
Alignment explanation
Indices: 75647609--75647957 Score: 317
Period size: 43 Copynumber: 8.2 Consensus size: 42
75647599 TTTTTCATGA
* * ** *
75647609 CTTTAGTGGCGTTTTTGGGAAAAGCGCCGCTAAAGAACATG-A
1 CTTTAGCGGCG-TTTTGGGAAAAGAGCCGCTAAAGGTCATGTT
* * * **** * * *
75647651 CTTTTAGTGGCGTTTTTGGAAAAGCGTTATTAAAAGTTAGGTT
1 C-TTTAGCGGCGTTTTGGGAAAAGAGCCGCTAAAGGTCATGTT
* *
75647694 CTTTAGCGGCG-TTT-GTAGAGAGAGCGCTGCTAAAGGTCATGTT
1 CTTTAGCGGCGTTTTGGGA-AAAGAGC-C-GCTAAAGGTCATGTT
* * * * *
75647737 CTCTAGCGGCGTTTTTGTAAAAGAGCCGCTAAAAGTCATGGT
1 CTTTAGCGGCGTTTTGGGAAAAGAGCCGCTAAAGGTCATGTT
* *
75647779 CTTTAGCGGCATTTTGGAAAAAGAGCCGCTAAAGGTCATGTT
1 CTTTAGCGGCGTTTTGGGAAAAGAGCCGCTAAAGGTCATGTT
* * * *
75647821 CTTTAGCGGCGTTTTTGGGATAAGTGACGCTAAAGGTCTTGTT
1 CTTTAGCGGCG-TTTTGGGAAAAGAGCCGCTAAAGGTCATGTT
* *
75647864 CTTTAGCGGCATTTATGGGAAAAGCGCCGCTAAAGGTCATGTT
1 CTTTAGCGGCGTTT-TGGGAAAAGAGCCGCTAAAGGTCATGTT
*
75647907 CTTTAGCGGCGTTTGTGGGAAAAAAGCCGCTAAAGGTCATGTT
1 CTTTAGCGGCGTTT-TGGGAAAAGAGCCGCTAAAGGTCATGTT
*
75647950 CTATAGCG
1 CTTTAGCG
75647958 TCATTTTTTC
Statistics
Matches: 250, Mismatches: 48, Indels: 17
0.79 0.15 0.05
Matches are distributed among these distances:
40 2 0.01
41 7 0.03
42 91 0.36
43 138 0.55
44 9 0.04
45 3 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (42 bp):
CTTTAGCGGCGTTTTGGGAAAAGAGCCGCTAAAGGTCATGTT
Found at i:75647906 original size:86 final size:85
Alignment explanation
Indices: 75647621--75647964 Score: 352
Period size: 85 Copynumber: 4.0 Consensus size: 85
75647611 TTAGTGGCGT
* ** * * * ****
75647621 TTTTGGGAAAAGCGCCGCTAAAGAACATG-ACTTTTAGTGGCGTTTTT-GGAAAAGCGTTATTAA
1 TTTTGGAAAAAGCGCCGCTAAAGGTCATGTTC-TTTAGCGGCGTTTTTGGGAAAAGAGCCGCTAA
* * * *
75647684 AAGTTAGGTTCTTTAGCGGCG
65 AGGTCATGTTCTTTAGCGGCA
* * * * * *
75647705 TTTGTAGAGAGAGCGCTGCTAAAGGTCATGTTCTCTAGCGGCGTTTTT-GTAAAAGAGCCGCTAA
1 TTT-TGGAAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGAGCCGCTAA
* *
75647769 AAGTCATGGTCTTTAGCGGCA
65 AGGTCATGTTCTTTAGCGGCA
* * * *
75647790 TTTTGGAAAAAGAGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGATAAGTGACGCTAAA
1 TTTTGGAAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGAGCCGCTAAA
*
75647855 GGTCTTGTTCTTTAGCGGCA
66 GGTCATGTTCTTTAGCGGCA
* * *
75647875 TTTATGGGAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAAAGCCGCTAA
1 TTT-TGGAAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGAGCCGCTAA
* *
75647940 AGGTCATGTTCTATAGCGTCA
65 AGGTCATGTTCTTTAGCGGCA
75647961 TTTT
1 TTTT
75647965 TTCACATAAA
Statistics
Matches: 213, Mismatches: 43, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
84 41 0.19
85 96 0.45
86 76 0.36
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (85 bp):
TTTTGGAAAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGAGCCGCTAAA
GGTCATGTTCTTTAGCGGCA
Found at i:75651477 original size:19 final size:20
Alignment explanation
Indices: 75651412--75651497 Score: 75
Period size: 20 Copynumber: 4.3 Consensus size: 20
75651402 CTTATACTGG
** * *
75651412 TTGCACTTCAATGCCCCTGA
1 TTGCACTTCGGTGCCCTTGT
*
75651432 TTGCACTTCGGTGCCCTTTT
1 TTGCACTTCGGTGCCCTTGT
* *
75651452 TTACACTTTGGTG-CCTTGT
1 TTGCACTTCGGTGCCCTTGT
* * *
75651471 TTGCACTTCGATGCCCCTGA
1 TTGCACTTCGGTGCCCTTGT
75651491 TTGCACT
1 TTGCACT
75651498 CTAGTGCCCC
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
19 15 0.29
20 37 0.71
ACGTcount: A:0.13, C:0.30, G:0.19, T:0.38
Consensus pattern (20 bp):
TTGCACTTCGGTGCCCTTGT
Found at i:75654617 original size:45 final size:45
Alignment explanation
Indices: 75654566--75654651 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
75654556 ATATAATCTA
*
75654566 AACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATTCG
1 AACTCATTAAGTTGTGGTCTGAGTTCATGATATATGTGACATTCG
*
75654611 AACTCATTAAGTTGTGGTCTGAGTTCGTGATATATGTGACA
1 AACTCATTAAGTTGTGGTCTGAGTTCATGATATATGTGACA
75654652 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (45 bp):
AACTCATTAAGTTGTGGTCTGAGTTCATGATATATGTGACATTCG
Found at i:75655413 original size:43 final size:43
Alignment explanation
Indices: 75655365--75655446 Score: 164
Period size: 43 Copynumber: 1.9 Consensus size: 43
75655355 AGAGGTGGCT
75655365 CATATTGATTATTTTGGGTTGTAACCCTAATTATTGATGAATG
1 CATATTGATTATTTTGGGTTGTAACCCTAATTATTGATGAATG
75655408 CATATTGATTATTTTGGGTTGTAACCCTAATTATTGATG
1 CATATTGATTATTTTGGGTTGTAACCCTAATTATTGATG
75655447 CATGTATGCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (43 bp):
CATATTGATTATTTTGGGTTGTAACCCTAATTATTGATGAATG
Found at i:75656568 original size:15 final size:16
Alignment explanation
Indices: 75656536--75656569 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
75656526 CTTACCGAGG
75656536 GTTCATCACATAATGA
1 GTTCATCACATAATGA
75656552 GTTCATCACAT-ATGA
1 GTTCATCACATAATGA
75656567 GTT
1 GTT
75656570 TTACGTACGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (16 bp):
GTTCATCACATAATGA
Found at i:75656864 original size:42 final size:42
Alignment explanation
Indices: 75656703--75656857 Score: 202
Period size: 42 Copynumber: 3.7 Consensus size: 42
75656693 TACCATGCCA
* * ** *
75656703 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAAATCG
* * *
75656745 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCACATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCAAATCG
* * *
75656788 ATGCCATATCTCAGATATGGTCTTACACGAAGTCTCAAATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAAATCG
75656830 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
75656858 ATAGTCTTAG
Statistics
Matches: 98, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 63 0.64
43 35 0.36
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCAAATCG
Found at i:75661023 original size:37 final size:37
Alignment explanation
Indices: 75660977--75661051 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
75660967 TTTATTCAAC
75660977 ACATAAGCAAGATAAGCTTTACAACCTTTCCTTACAT
1 ACATAAGCAAGATAAGCTTTACAACCTTTCCTTACAT
75661014 ACATAAGCAAGATAAGCTTTACAACCTTTCCTTACAT
1 ACATAAGCAAGATAAGCTTTACAACCTTTCCTTACAT
75661051 A
1 A
75661052 TTTTTGGGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (37 bp):
ACATAAGCAAGATAAGCTTTACAACCTTTCCTTACAT
Found at i:75667798 original size:42 final size:41
Alignment explanation
Indices: 75667639--75667801 Score: 164
Period size: 42 Copynumber: 3.9 Consensus size: 41
75667629 CATACCAATG
* * * *
75667639 CATATCCCAGATATGGTCTTACATGGGATCTCATATCGATGC
1 CATATCCCAGATATGGTCTTACA-CGAAACTCATAACGATGC
* * ** **
75667681 CAATAGCCCAGCTATGGTCTTACACGATTCTCATATTGATGC
1 C-ATATCCCAGATATGGTCTTACACGAAACTCATAACGATGC
* * * *
75667723 CATGTCCCAGACATGGTCCTACATGAAATCTCATAACGATGC
1 CATATCCCAGATATGGTCTTACACGAAA-CTCATAACGATGC
75667765 CATATCCCAGATATGGTCTTACACGTAAACTCATAAC
1 CATATCCCAGATATGGTCTTACACG-AAACTCATAAC
75667802 CTTAATGTCA
Statistics
Matches: 98, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
41 19 0.19
42 56 0.57
43 23 0.23
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (41 bp):
CATATCCCAGATATGGTCTTACACGAAACTCATAACGATGC
Found at i:75667798 original size:84 final size:84
Alignment explanation
Indices: 75667643--75667799 Score: 217
Period size: 84 Copynumber: 1.9 Consensus size: 84
75667633 CCAATGCATA
* * ** * *
75667643 TCCCAGATATGGTCTTACATGGGATCTCATATCGATGCCAATAGCCCAGCTATGGTCTTACACGA
1 TCCCAGACATGGTCCTACATGAAATCTCATAACGATGCCAATAGCCCAGATATGGTCTTACACGA
**
75667708 TTCTCATATTGATGCCATG
66 AACTCATATTGATGCCATG
*
75667727 TCCCAGACATGGTCCTACATGAAATCTCATAACGATGCC-ATATCCCAGATATGGTCTTACACGT
1 TCCCAGACATGGTCCTACATGAAATCTCATAACGATGCCAATAGCCCAGATATGGTCTTACACG-
75667791 AAACTCATA
65 AAACTCATA
75667800 ACCTTAATGT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
83 22 0.35
84 41 0.65
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (84 bp):
TCCCAGACATGGTCCTACATGAAATCTCATAACGATGCCAATAGCCCAGATATGGTCTTACACGA
AACTCATATTGATGCCATG
Found at i:75670917 original size:78 final size:78
Alignment explanation
Indices: 75670824--75670986 Score: 317
Period size: 78 Copynumber: 2.1 Consensus size: 78
75670814 AATATCATTT
75670824 TTTTAATATTGTATAAATTCCTTAATTATGATATATAAAATTTTCTTATCATATTTGAATTGTTA
1 TTTTAATATTGTATAAATTCCTTAATTATGATATATAAAATTTTCTTATCATATTTGAATTGTTA
75670889 ATACATTAATATA
66 ATACATTAATATA
*
75670902 TTTTAATATTGTATAAATTCCTTAATTATGATATATAAAATTTTCTTATCATATTTGAGTTGTTA
1 TTTTAATATTGTATAAATTCCTTAATTATGATATATAAAATTTTCTTATCATATTTGAATTGTTA
75670967 ATACATTAATATA
66 ATACATTAATATA
75670980 TTTTAAT
1 TTTTAAT
75670987 TATATTCAAT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 84 1.00
ACGTcount: A:0.37, C:0.06, G:0.06, T:0.51
Consensus pattern (78 bp):
TTTTAATATTGTATAAATTCCTTAATTATGATATATAAAATTTTCTTATCATATTTGAATTGTTA
ATACATTAATATA
Found at i:75671675 original size:26 final size:28
Alignment explanation
Indices: 75671614--75671677 Score: 69
Period size: 31 Copynumber: 2.2 Consensus size: 28
75671604 TGATGAGAAG
75671614 AATTTAATTAATTTTTTAATTATTTTATTTT
1 AATTTAATTAATTTTTTAATTATTTTA---T
* *
75671645 GATTTAATTGATTTTTTAATTA-TTTA-
1 AATTTAATTAATTTTTTAATTATTTTAT
75671671 AATTTAA
1 AATTTAA
75671678 ATATTCTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
26 6 0.20
30 4 0.13
31 20 0.67
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (28 bp):
AATTTAATTAATTTTTTAATTATTTTAT
Found at i:75672413 original size:51 final size:50
Alignment explanation
Indices: 75672355--75672452 Score: 119
Period size: 51 Copynumber: 1.9 Consensus size: 50
75672345 TAACAAATAT
75672355 TATTAAAATATT-GTACAAAA-TTTAGAAAAGTTATAAAAAACTATAAAAAAA
1 TATTAAAAT-TTAGTA-AAAAGTTTAGAAAAGTT-TAAAAAACTATAAAAAAA
* * * *
75672406 TATTAAAATTTATTAAAAAGTTTTGAAAAGTTTAGAAAATTATAAAA
1 TATTAAAATTTAGTAAAAAGTTTAGAAAAGTTTAAAAAACTATAAAA
75672453 TTATTAGATT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
50 19 0.46
51 22 0.54
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (50 bp):
TATTAAAATTTAGTAAAAAGTTTAGAAAAGTTTAAAAAACTATAAAAAAA
Found at i:75673174 original size:18 final size:19
Alignment explanation
Indices: 75673135--75673181 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
75673125 TAAATAAAAA
75673135 ATATAAATTATTAAAATATT
1 ATATAAA-TATTAAAATATT
75673155 ATATAAAT-TTAGAAAT-TT
1 ATATAAATATTA-AAATATT
*
75673173 ATAAAAATA
1 ATATAAATA
75673182 GAAAATTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 12 0.50
19 5 0.21
20 7 0.29
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
ATATAAATATTAAAATATT
Found at i:75673264 original size:9 final size:9
Alignment explanation
Indices: 75673244--75673326 Score: 58
Period size: 10 Copynumber: 8.3 Consensus size: 9
75673234 TTAAAAATTA
75673244 TTTTATAAAT
1 TTTTAT-AAT
*
75673254 TTTTATCAT
1 TTTTATAAT
*
75673263 TTTAATAATT
1 TTTTATAA-T
*
75673273 TTTGTATTAT
1 TTT-TATAAT
75673283 TTTCTATAACT
1 TTT-TATAA-T
*
75673294 TTTTCTATAT
1 TTTTATA-AT
75673304 TTTTATAAT
1 TTTTATAAT
75673313 ATTTCTATAAT
1 -TTT-TATAAT
75673324 TTT
1 TTT
75673327 AATGATCAAC
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
9 10 0.17
10 34 0.59
11 14 0.24
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:75673304 original size:21 final size:19
Alignment explanation
Indices: 75673244--75673327 Score: 80
Period size: 19 Copynumber: 4.3 Consensus size: 19
75673234 TTAAAAATTA
*
75673244 TTTTATAAATTTT-TATCAT
1 TTTTATAATTTTTCTAT-AT
* *
75673263 TTTAATAATTTTTGTATTAT
1 TTTTATAATTTTTCTA-TAT
75673283 TTTCTATAACTTTTTCTATAT
1 TTT-TATAA-TTTTTCTATAT
* *
75673304 TTTTATAATATTTCTATAA
1 TTTTATAATTTTTCTATAT
75673323 TTTTA
1 TTTTA
75673328 ATGATCAACA
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
19 25 0.45
20 12 0.22
21 11 0.20
22 7 0.13
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.63
Consensus pattern (19 bp):
TTTTATAATTTTTCTATAT
Found at i:75673605 original size:25 final size:25
Alignment explanation
Indices: 75673577--75673626 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
75673567 TATTTTACAA
*
75673577 GAACTTTCAATACTTAAGCTATTAT
1 GAACTTTCAACACTTAAGCTATTAT
75673602 GAACTTTCAACACTTAAGCTATTAT
1 GAACTTTCAACACTTAAGCTATTAT
75673627 TTTTATTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.08, T:0.38
Consensus pattern (25 bp):
GAACTTTCAACACTTAAGCTATTAT
Found at i:75674117 original size:23 final size:24
Alignment explanation
Indices: 75674067--75674121 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
75674057 TTTTTTATAT
75674067 TAAAATA-TATTTTTTACTTTAAA
1 TAAAATATTATTTTTTACTTTAAA
*
75674090 TAAAATATTATTATTTTA-TTTTAA
1 TAAAATATTATT-TTTTACTTTAAA
75674114 -AAAATATT
1 TAAAATATT
75674122 TAAATATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 15 0.52
24 9 0.31
25 5 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (24 bp):
TAAAATATTATTTTTTACTTTAAA
Found at i:75674397 original size:3 final size:3
Alignment explanation
Indices: 75674389--75674432 Score: 61
Period size: 3 Copynumber: 14.3 Consensus size: 3
75674379 GAGAGAAATG
* *
75674389 AGA AGA AGA AAA AGA AGA AGA AGA AGA AGA AGAA AGA AAA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG-A AGA AGA AGA A
75674433 AAAGTAATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (3 bp):
AGA
Done.